Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 358 of 362
Found at i:118213369 original size:31 final size:33
Alignment explanation
Indices: 118213299--118213374 Score: 86
Period size: 33 Copynumber: 2.4 Consensus size: 33
118213289 TTGTAACTTT
*
118213299 TTATAGTTGAGTGACAAAAAAAAAGAAATTTAC
1 TTATAGTTGAGTGACAAAAAAAAAGAAATGTAC
* * *
118213332 TAATAGTT-AGGTGACCAAAAAAGA-AAATGT-C
1 TTATAGTTGA-GTGACAAAAAAAAAGAAATGTAC
118213363 TTATAGTTGAGT
1 TTATAGTTGAGT
118213375 TACTATTGAT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
31 10 0.28
32 7 0.19
33 19 0.53
ACGTcount: A:0.46, C:0.07, G:0.18, T:0.29
Consensus pattern (33 bp):
TTATAGTTGAGTGACAAAAAAAAAGAAATGTAC
Found at i:118217937 original size:16 final size:16
Alignment explanation
Indices: 118217913--118217952 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
118217903 CATATACATT
118217913 CAAACATACACACAAA
1 CAAACATACACACAAA
* *
118217929 CATACATACACACTAA
1 CAAACATACACACAAA
118217945 CAAACATA
1 CAAACATA
118217953 AAGTATACAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.57, C:0.30, G:0.00, T:0.12
Consensus pattern (16 bp):
CAAACATACACACAAA
Found at i:118226167 original size:33 final size:33
Alignment explanation
Indices: 118226130--118226212 Score: 109
Period size: 32 Copynumber: 2.6 Consensus size: 33
118226120 CTACTTTCAA
* * *
118226130 TTTATCCAATT-TGGTATCTGTATTTTTATTTTG
1 TTTATCC-ATTATGATACCTGTACTTTTATTTTG
118226163 TTTAT-CATTATGATACCTGTACTTTTATTTTG
1 TTTATCCATTATGATACCTGTACTTTTATTTTG
118226195 TTTAT-CATTATGATACCT
1 TTTATCCATTATGATACCT
118226213 ATTTATAACG
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
31 3 0.07
32 38 0.83
33 5 0.11
ACGTcount: A:0.22, C:0.12, G:0.10, T:0.57
Consensus pattern (33 bp):
TTTATCCATTATGATACCTGTACTTTTATTTTG
Found at i:118226189 original size:32 final size:32
Alignment explanation
Indices: 118226147--118226212 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
118226137 AATTTGGTAT
*
118226147 CTGTATTTTTATTTTGTTTATCATTATGATAC
1 CTGTACTTTTATTTTGTTTATCATTATGATAC
118226179 CTGTACTTTTATTTTGTTTATCATTATGATAC
1 CTGTACTTTTATTTTGTTTATCATTATGATAC
118226211 CT
1 CT
118226213 ATTTATAACG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.58
Consensus pattern (32 bp):
CTGTACTTTTATTTTGTTTATCATTATGATAC
Found at i:118227948 original size:65 final size:65
Alignment explanation
Indices: 118227872--118228002 Score: 244
Period size: 65 Copynumber: 2.0 Consensus size: 65
118227862 ACTATTATTA
*
118227872 GATTATGATTTTGATCAAGCTTCTCAATAAAAGCTTAAAATTAAACCGAAAAGACCGGGTAACTT
1 GATTATGATTTTGATCAAGCTTCTCAATAAAAGCTTAAAATTAAACCGAAAAGACCGAGTAACTT
*
118227937 GATTATGATTTTGATCAAGCTTCTCAATAAAAGCTTAAAATTAAACCGAAAAGACTGAGTAACTT
1 GATTATGATTTTGATCAAGCTTCTCAATAAAAGCTTAAAATTAAACCGAAAAGACCGAGTAACTT
118228002 G
1 G
118228003 CAACTCGCTA
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (65 bp):
GATTATGATTTTGATCAAGCTTCTCAATAAAAGCTTAAAATTAAACCGAAAAGACCGAGTAACTT
Found at i:118232860 original size:20 final size:20
Alignment explanation
Indices: 118232823--118232860 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
118232813 TGTTTACTCA
**
118232823 TTTTATCATTTTGTTCTTTT
1 TTTTATCATTTTAATCTTTT
118232843 TTTTATCATTTTAATCTT
1 TTTTATCATTTTAATCTT
118232861 GGAACTTCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.16, C:0.11, G:0.03, T:0.71
Consensus pattern (20 bp):
TTTTATCATTTTAATCTTTT
Found at i:118234005 original size:32 final size:32
Alignment explanation
Indices: 118233964--118234029 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
118233954 TTATGACTAT
118233964 GATTGACTTGGATTTTCTAGAAATGAAATATC
1 GATTGACTTGGATTTTCTAGAAATGAAATATC
118233996 GATTGACTTGGATTTTCTAGAAATGAAATATC
1 GATTGACTTGGATTTTCTAGAAATGAAATATC
118234028 GA
1 GA
118234030 AAACATAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.36
Consensus pattern (32 bp):
GATTGACTTGGATTTTCTAGAAATGAAATATC
Found at i:118235887 original size:13 final size:13
Alignment explanation
Indices: 118235869--118235947 Score: 88
Period size: 13 Copynumber: 6.1 Consensus size: 13
118235859 CTAGTTTGGC
118235869 AATGCTTTTGAAA
1 AATGCTTTTGAAA
118235882 AATGCTTTTGAAA
1 AATGCTTTTGAAA
*
118235895 AATACTTTTGAAA
1 AATGCTTTTGAAA
* *
118235908 AGTGC-TGTGAAA
1 AATGCTTTTGAAA
**
118235920 AAGTGCTTTTGAGG
1 AA-TGCTTTTGAAA
*
118235934 AGTGCTTTTGAAA
1 AATGCTTTTGAAA
118235947 A
1 A
118235948 GTTTGTTTAA
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
12 7 0.13
13 41 0.77
14 5 0.09
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (13 bp):
AATGCTTTTGAAA
Found at i:118239531 original size:82 final size:81
Alignment explanation
Indices: 118239378--118239535 Score: 194
Period size: 82 Copynumber: 1.9 Consensus size: 81
118239368 CATAGGGCCC
** * * *
118239378 CAAAATGAAAAAAATTCAATCTTGTCCTTTTATAAATAAATAACCTATAAATTAATATATAGTAC
1 CAAAATGAAAAAAATTCAATCTAATCCTCTTATAAATAAAGAAACTATAAATTAATATATAG-AC
118239443 AATTGCACTTTGGTACT
65 AATTGCACTTTGGTACT
* * *
118239460 CAAAATGAAAAAATTTCAAT-TCAATCCTCTTATAAATAAAGAAATTATAAATTTATATATA-AC
1 CAAAATGAAAAAAATTCAATCT-AATCCTCTTATAAATAAAGAAACTATAAATTAATATATAGAC
118239523 AAAGTTGCACTTT
65 -AA-TTGCACTTT
118239536 AGCTCTCTTA
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
80 2 0.03
81 3 0.05
82 60 0.92
ACGTcount: A:0.46, C:0.13, G:0.06, T:0.35
Consensus pattern (81 bp):
CAAAATGAAAAAAATTCAATCTAATCCTCTTATAAATAAAGAAACTATAAATTAATATATAGACA
ATTGCACTTTGGTACT
Found at i:118246870 original size:11 final size:11
Alignment explanation
Indices: 118246854--118246878 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
118246844 AATTATTTCC
118246854 TAAATCAAATA
1 TAAATCAAATA
118246865 TAAATCAAATA
1 TAAATCAAATA
118246876 TAA
1 TAA
118246879 GTATAAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (11 bp):
TAAATCAAATA
Found at i:118247487 original size:24 final size:23
Alignment explanation
Indices: 118247460--118247517 Score: 57
Period size: 25 Copynumber: 2.5 Consensus size: 23
118247450 AAATATAGAA
118247460 AAATAAATATTAAAAAAATGTATT
1 AAATAAATATTAAAAAAAT-TATT
*
118247484 AAATTAAGA-ATTAAAATAATTATT
1 AAA-TAA-ATATTAAAAAAATTATT
*
118247508 -AATCAATATT
1 AAATAAATATT
118247518 TTTAAATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
21 1 0.03
22 5 0.17
23 2 0.07
24 7 0.24
25 13 0.45
26 1 0.03
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.36
Consensus pattern (23 bp):
AAATAAATATTAAAAAAATTATT
Found at i:118253071 original size:20 final size:21
Alignment explanation
Indices: 118253034--118253086 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
118253024 ATATATTGGT
*
118253034 AATA-ATATATAATTAATTTTA
1 AATATATATATAA-TAATTATA
118253055 AATATATATATAA-AATTATAA
1 AATATATATATAATAATTAT-A
*
118253076 AATAAATATAT
1 AATATATATAT
118253087 GTAAAGTATG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 5 0.18
21 15 0.54
22 8 0.29
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
AATATATATATAATAATTATA
Found at i:118253720 original size:8 final size:8
Alignment explanation
Indices: 118253709--118253760 Score: 50
Period size: 8 Copynumber: 6.0 Consensus size: 8
118253699 TTTTTTTGAA
118253709 TTTTAATT
1 TTTTAATT
118253717 TTTTAATTT
1 TTTTAA-TT
*
118253726 TTTTTATT
1 TTTTAATT
118253734 TTTTGAATAT
1 TTTT-AAT-T
118253744 TTTGTAATT
1 TTT-TAATT
*
118253753 TTTCAATT
1 TTTTAATT
118253761 ATTTGTTGAC
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
8 16 0.43
9 13 0.35
10 7 0.19
11 1 0.03
ACGTcount: A:0.23, C:0.02, G:0.04, T:0.71
Consensus pattern (8 bp):
TTTTAATT
Found at i:118253730 original size:18 final size:18
Alignment explanation
Indices: 118253709--118253760 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
118253699 TTTTTTTGAA
118253709 TTTTAATTTTTTAATTTT
1 TTTTAATTTTTTAATTTT
*
118253727 TTTT-ATTTTTTGAATATT
1 TTTTAATTTTTT-AATTTT
* *
118253745 TTGTAATTTTTCAATT
1 TTTTAATTTTTTAATT
118253761 ATTTGTTGAC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 7 0.25
18 15 0.54
19 6 0.21
ACGTcount: A:0.23, C:0.02, G:0.04, T:0.71
Consensus pattern (18 bp):
TTTTAATTTTTTAATTTT
Found at i:118253737 original size:25 final size:28
Alignment explanation
Indices: 118253695--118253755 Score: 76
Period size: 25 Copynumber: 2.3 Consensus size: 28
118253685 AATCTTTTCA
118253695 TAATTTTTTTTGAATTTT-AAT-TTTT-
1 TAATTTTTTTTGAATTTTGAATATTTTG
*
118253720 TAATTTTTTTT-ATTTTTTGAATATTTTG
1 TAATTTTTTTTGA-ATTTTGAATATTTTG
118253748 TAATTTTT
1 TAATTTTT
118253756 CAATTATTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
24 1 0.03
25 15 0.48
26 3 0.10
27 4 0.13
28 8 0.26
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (28 bp):
TAATTTTTTTTGAATTTTGAATATTTTG
Found at i:118253765 original size:18 final size:18
Alignment explanation
Indices: 118253708--118253766 Score: 50
Period size: 18 Copynumber: 3.3 Consensus size: 18
118253698 TTTTTTTTGA
*
118253708 ATTT-TAATTTTTTAATT
1 ATTTGTAATTTTTCAATT
* * * *
118253725 TTTTTTATTTTTTGAA-T
1 ATTTGTAATTTTTCAATT
118253742 ATTTTGTAATTTTTCAATT
1 A-TTTGTAATTTTTCAATT
118253761 ATTTGT
1 ATTTGT
118253767 TGACATGGTA
Statistics
Matches: 32, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
17 4 0.12
18 26 0.81
19 2 0.06
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.69
Consensus pattern (18 bp):
ATTTGTAATTTTTCAATT
Found at i:118255850 original size:27 final size:28
Alignment explanation
Indices: 118255812--118255866 Score: 85
Period size: 29 Copynumber: 2.0 Consensus size: 28
118255802 TATAAGTTGA
118255812 TAAAAAAAA-TTTTGACCCCTTAAAAGC
1 TAAAAAAAATTTTTGACCCCTTAAAAGC
*
118255839 TAAAAAAAATTTTTTGAGCCCTTAAAAG
1 TAAAAAAAA-TTTTTGACCCCTTAAAAG
118255867 TTGGTAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 9 0.36
29 16 0.64
ACGTcount: A:0.47, C:0.15, G:0.09, T:0.29
Consensus pattern (28 bp):
TAAAAAAAATTTTTGACCCCTTAAAAGC
Found at i:118266530 original size:11 final size:11
Alignment explanation
Indices: 118266514--118266540 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
118266504 TATAATATTT
118266514 TAATTTTTCTA
1 TAATTTTTCTA
118266525 TAATTTTTCTA
1 TAATTTTTCTA
118266536 TAATT
1 TAATT
118266541 AAAGTAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (11 bp):
TAATTTTTCTA
Found at i:118267922 original size:22 final size:23
Alignment explanation
Indices: 118267891--118267933 Score: 63
Period size: 21 Copynumber: 1.9 Consensus size: 23
118267881 GCTCTTTTTC
118267891 TTAAGTAATT-TTTTT-AGAAAA
1 TTAAGTAATTCTTTTTGAGAAAA
118267912 TTAAGATAATTCTTTTTGAGAA
1 TTAAG-TAATTCTTTTTGAGAA
118267934 GTCTATATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.26
22 5 0.26
23 5 0.26
24 4 0.21
ACGTcount: A:0.40, C:0.02, G:0.12, T:0.47
Consensus pattern (23 bp):
TTAAGTAATTCTTTTTGAGAAAA
Found at i:118270690 original size:22 final size:22
Alignment explanation
Indices: 118270643--118270690 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
118270633 ATATTTTAAT
* * *
118270643 TTTATTCTTTAAAAATTATATT
1 TTTATTATTTAAAAATTACATA
118270665 TTTATTATTGTAAAAATTACA-A
1 TTTATTATT-TAAAAATTACATA
118270687 TTTA
1 TTTA
118270691 ATTTTTATCC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.54
Consensus pattern (22 bp):
TTTATTATTTAAAAATTACATA
Found at i:118272819 original size:12 final size:12
Alignment explanation
Indices: 118272804--118272835 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
118272794 ATCACCACCC
118272804 CCACCACCGCCG
1 CCACCACCGCCG
*
118272816 CCACCGCCGCCG
1 CCACCACCGCCG
118272828 CCACCACC
1 CCACCACC
118272836 ACCCATTGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.69, G:0.16, T:0.00
Consensus pattern (12 bp):
CCACCACCGCCG
Found at i:118276101 original size:4 final size:4
Alignment explanation
Indices: 118276092--118276116 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
118276082 TATCAAAATG
118276092 TAAA TAAA TAAA TAAA TAAA TAAA T
1 TAAA TAAA TAAA TAAA TAAA TAAA T
118276117 TTTTAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (4 bp):
TAAA
Found at i:118279931 original size:19 final size:19
Alignment explanation
Indices: 118279907--118279945 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
118279897 TACAAATTAA
118279907 TATAATGATAAATCTGCAC
1 TATAATGATAAATCTGCAC
118279926 TATAATGATAAATCTGCAC
1 TATAATGATAAATCTGCAC
118279945 T
1 T
118279946 TTGACTCCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.41, C:0.15, G:0.10, T:0.33
Consensus pattern (19 bp):
TATAATGATAAATCTGCAC
Found at i:118280007 original size:26 final size:26
Alignment explanation
Indices: 118279972--118280024 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
118279962 TTACAATACA
118279972 TTTTTTATCCTCCTAAACCAATTTTT
1 TTTTTTATCCTCCTAAACCAATTTTT
118279998 TTTTTTATCCTCCTAAACCAATTTTT
1 TTTTTTATCCTCCTAAACCAATTTTT
118280024 T
1 T
118280025 AGCTTCACCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.55
Consensus pattern (26 bp):
TTTTTTATCCTCCTAAACCAATTTTT
Found at i:118284624 original size:9 final size:10
Alignment explanation
Indices: 118284613--118284677 Score: 51
Period size: 12 Copynumber: 5.9 Consensus size: 10
118284603 GGTATAAATA
118284613 AATAAATAA-
1 AATAAATAAT
*
118284622 AATGCAATAAT
1 AAT-AAATAAT
118284633 AATAATGATAAT
1 AATAA--ATAAT
118284645 AATAATAATAAT
1 AAT-A-AATAAT
118284657 AATAAATTCAAT
1 AATAAA-T-AAT
118284669 AATAAATAA
1 AATAAATAA
118284678 AATGACAGGA
Statistics
Matches: 46, Mismatches: 2, Indels: 15
0.73 0.03 0.24
Matches are distributed among these distances:
9 3 0.07
10 10 0.22
11 6 0.13
12 25 0.54
13 1 0.02
14 1 0.02
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (10 bp):
AATAAATAAT
Found at i:118284673 original size:3 final size:3
Alignment explanation
Indices: 118284627--118284661 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
118284617 AATAAAATGC
*
118284627 AAT AAT AAT AAT GAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
118284662 ATTCAATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:118286250 original size:175 final size:170
Alignment explanation
Indices: 118285946--118286351 Score: 571
Period size: 175 Copynumber: 2.4 Consensus size: 170
118285936 TGCAGCAACT
*
118285946 TCAGGGAGATAGGATTA-TCGGCTTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGATCTAAA
1 TCAGGGAGATAGGATTACT-GGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAAA
*
118286010 ATTCTTCAGTCTATTCCACTGTAATCTCAGGGAAATAAGACCTGACACGATCTACTCTGCTGTAA
65 ATTCTTCAGTCTATTCCACTGTAATCTCAGGGAAATAAGACCTGACACGATCTACTCTACTGTAA
118286075 CTTCAGAGAGATAAGATCCTTCATTTTAATCCGCTCCACTGTAATC
130 CTTCAGAGAGATAAGAT-C--C--TTTAATCCGCTCCACTGTAATC
* * * * *
118286121 TCAGGGAGATAGGATTACTGGCTTCAATCTACTCCACTGTAACCTCAGAGAGATAAGATCTGAAA
1 TCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAA
** * *** *
118286186 TTCTTTGGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGATGTGATCTTCTCTACTGTAAC
66 TTCTTCAGTCTATTCCACTGTAATCTCAGGGAAATAAGACCTGACACGATCTACTCTACTGTAAC
*
118286251 TTCAGAGAGATAAGATCCTTTAATCCGCTCCATTGTAATC
131 TTCAGAGAGATAAGATCCTTTAATCCGCTCCACTGTAATC
* ** **
118286291 TCAAGGAGATAGGATTACTATCTTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT
1 TCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT
118286352 CTGGCTTCAA
Statistics
Matches: 206, Mismatches: 24, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
170 73 0.35
172 1 0.00
174 1 0.00
175 130 0.63
176 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (170 bp):
TCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAA
TTCTTCAGTCTATTCCACTGTAATCTCAGGGAAATAAGACCTGACACGATCTACTCTACTGTAAC
TTCAGAGAGATAAGATCCTTTAATCCGCTCCACTGTAATC
Found at i:118286263 original size:87 final size:85
Alignment explanation
Indices: 118285990--118286267 Score: 281
Period size: 87 Copynumber: 3.2 Consensus size: 85
118285980 CGCTATAATC
* * *
118285990 TCAGGGAGATAAGATCTAAAATTCTTCAGTCTATTCCACTGTAATCTCAGGGAAATAAGACCTGA
1 TCAGAGAGATAAGATCT-AAATTCTTTAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGA
** *
118286055 CACGATCTACTCTGCTGTAACT
65 -TTGATCTACTCTACTGTAACT
** * * * * * *
118286077 TCAGAGAGATAAGATCCTTCA-T-TTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACT
1 TCAGAGAGATAAGAT-CTAAATTCTTTAGTCTGTTCCACTGTAATCTCAGGGAAATAAGA--CCT
* * * *
118286140 GGCTTCAATCTACTCCACTGTAACC
63 -GATT-GATCTACTCTACTGTAACT
*
118286165 TCAGAGAGATAAGATCTGAAATTCTTTGGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGA
1 TCAGAGAGATAAGATCT-AAATTCTTTAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGA
*
118286230 TGTGATCTTCTCTACTGTAACT
65 T-TGATCTACTCTACTGTAACT
118286252 TCAGAGAGATAAGATC
1 TCAGAGAGATAAGATC
118286268 CTTTAATCCG
Statistics
Matches: 150, Mismatches: 32, Indels: 18
0.75 0.16 0.09
Matches are distributed among these distances:
85 29 0.19
86 1 0.01
87 52 0.35
88 37 0.25
89 1 0.01
90 30 0.20
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (85 bp):
TCAGAGAGATAAGATCTAAATTCTTTAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGAT
TGATCTACTCTACTGTAACT
Found at i:118286343 original size:44 final size:45
Alignment explanation
Indices: 118285972--118286438 Score: 203
Period size: 44 Copynumber: 10.7 Consensus size: 45
118285962 ATCGGCTTCA
* ** *
118285972 ATCTGCTCCGCTATAATCTCAGGGAGATAAGATCTAAAAT-TCTTC
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTACTATCT-TTG
** * * *
118286017 AGTCTATTCCACTGTAATCTCAGGGAAATAAGACCTGAC-A-C---G
1 A-TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT-ACTATCTTTG
* * * * *
118286059 ATCTACTCTGCTGTAA-CTTCAGAGAGATAAGATCCTTC-AT-TTTA
1 ATCTGCTCCGCTGTAATC-TCAGGGAGATAAGAT-CTACTATCTTTG
* * * ** **
118286103 ATCCGCTCCACTGTAATCTCAGGGAGATAGGAT-TACTGGCTTCA
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTACTATCTTTG
* * * * *
118286147 ATCTACTCCACTGTAACCTCAGAGAGATAAGATCTGA-AATTCTTTG
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT-ACTA-TCTTTG
* * * * *
118286193 GTCTGTTCCACTGTAATCTCAGGGAAATAAGA-C--CTGA--TGTG
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTACT-ATCTTTG
* ** * *
118286234 ATCTTCTCTACTGTAA-CTTCAGAGAGATAAGA--T-C---CTTTA
1 ATCTGCTCCGCTGTAATC-TCAGGGAGATAAGATCTACTATCTTTG
* ** * *
118286273 ATCCGCTCCATTGTAATCTCAAGGAGATAGGAT-TACTATCTTTG
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTACTATCTTTG
** **
118286317 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT-CTGGCTTCA
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTACTATCTTTG
* *
118286361 ATCTGCTCCGCTGTAACCTCAGGGAGATAAGATCTGA-AATTCTTTG
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT-ACTA-TCTTTG
* * *
118286407 GTCTGTTCCCCTGTAATCTCAGGGAGATAAGA
1 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
118286439 CCTATATAAT
Statistics
Matches: 313, Mismatches: 79, Indels: 59
0.69 0.18 0.13
Matches are distributed among these distances:
39 25 0.08
40 4 0.01
41 55 0.18
42 5 0.02
44 128 0.41
45 5 0.02
46 90 0.29
47 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (45 bp):
ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTACTATCTTTG
Found at i:118291968 original size:24 final size:24
Alignment explanation
Indices: 118291936--118291981 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
118291926 ACCGAAAAGA
118291936 ACATTCTAGTGCCTCATCGTGCGT
1 ACATTCTAGTGCCTCATCGTGCGT
118291960 ACATTCTAGTGCCTCATCGTGC
1 ACATTCTAGTGCCTCATCGTGC
118291982 ATAACCGACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.17, C:0.30, G:0.20, T:0.33
Consensus pattern (24 bp):
ACATTCTAGTGCCTCATCGTGCGT
Found at i:118297838 original size:44 final size:42
Alignment explanation
Indices: 118297481--118297897 Score: 228
Period size: 44 Copynumber: 9.7 Consensus size: 42
118297471 GTTCATTATA
* **
118297481 CAGG-TCTTATCTCCCTGAGATTACAG-GGAACAGACCAAAG
1 CAGGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAG
* * *
118297521 AATTTCA-GATCTTATCTCCCTGAGGTTACAGCGGAGCAGATTGAAG
1 -----CAGGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAG
* *
118297567 CAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAG
1 CAG-GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAG
* * * * * *
118297610 ATAGTAATCCTATCTCCTTGAGATTACAATGGAGCGGATT-AA-
1 -CAG-GATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAG
* * * * * *
118297652 -AGGATCTTATCTCTCTGA-AGTTACAGTAGAGAAGATCACAT
1 CAGGATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAG
* * **
118297693 CAGG-TCTTATTTCCCTGAGATTACAGTGGAACAGACCAAAG
1 CAGGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAG
* *
118297734 AATTTCA-GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAG
1 -----CAGGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAG
* * *
118297780 CCAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATG
1 -CAG-GATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-AAA-G
* * ** * ***
118297826 AAGGATCTTATCTCTCTGA-AGTTACAGCAGAGTAGA-TCGTG
1 CAGGATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAG
*
118297867 TCAGG-TCTTATTTCCCTGAGATTACAGTGGA
1 -CAGGATCTTATCTCCCTGAGATTACAGTGGA
118297898 ATAGACTGAA
Statistics
Matches: 286, Mismatches: 63, Indels: 50
0.72 0.16 0.13
Matches are distributed among these distances:
38 1 0.00
39 24 0.08
40 3 0.01
41 50 0.17
42 10 0.03
43 40 0.14
44 86 0.30
45 28 0.10
46 44 0.15
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27
Consensus pattern (42 bp):
CAGGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAG
Found at i:118297912 original size:175 final size:170
Alignment explanation
Indices: 118297570--118297975 Score: 589
Period size: 175 Copynumber: 2.4 Consensus size: 170
118297560 ATTGAAGCAG
** ** *
118297570 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATT
*
118297635 ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCT
66 ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACATCAGGTCT
118297700 TATTTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTC
131 TATTTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTC
* *
118297740 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATT
* * ***
118297805 ACAGTGGAGCGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGTGTCA
66 ACAATGGAGCGGATT---A--AAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACATCA
* ** *
118297870 GGTCTTATTTCCCTGAGATTACAGTGGAATAGACTGAAGAATTTT
126 GGTCTTATTTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTC
*
118297915 AGATCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAAGCC-GATAATCCTATCTCCCTGA
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAG-TAATCCTATCTCCCTGA
118297976 AGTTGCTGCA
Statistics
Matches: 210, Mismatches: 20, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
170 72 0.34
173 1 0.00
174 1 0.00
175 136 0.65
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (170 bp):
AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATT
ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACATCAGGTCT
TATTTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTC
Found at i:118299302 original size:9 final size:10
Alignment explanation
Indices: 118299243--118299301 Score: 52
Period size: 9 Copynumber: 5.9 Consensus size: 10
118299233 TCCTGTCATT
118299243 TTATTTATTA
1 TTATTTATTA
118299253 TTGAATTTATTA
1 TT--ATTTATTA
118299265 TTA-TTATTA
1 TTATTTATTA
*
118299274 TCA-TTATTA
1 TTATTTATTA
*
118299283 TTATTGCATT-
1 TTATT-TATTA
118299293 TTATTTATT
1 TTATTTATT
118299302 TATTTATACC
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
9 19 0.46
10 9 0.22
11 3 0.07
12 10 0.24
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.64
Consensus pattern (10 bp):
TTATTTATTA
Found at i:118302943 original size:19 final size:20
Alignment explanation
Indices: 118302919--118302958 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
118302909 AGACTGAGGG
118302919 AGTGAAACAG-ATCCAAGAA
1 AGTGAAACAGAATCCAAGAA
*
118302938 AGTGAATCAGAATCCAAGAA
1 AGTGAAACAGAATCCAAGAA
118302958 A
1 A
118302959 ATAGAGAGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.53, C:0.15, G:0.20, T:0.12
Consensus pattern (20 bp):
AGTGAAACAGAATCCAAGAA
Found at i:118303242 original size:29 final size:29
Alignment explanation
Indices: 118303201--118303258 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
118303191 TTATAAGGAT
* *
118303201 TGGATCAAATTAGTCCTTTTATTATTAAA
1 TGGATCAAATTAGTCCATATATTATTAAA
*
118303230 TGGATCAATTTAGTCCATATATTATTAAA
1 TGGATCAAATTAGTCCATATATTATTAAA
118303259 AAAATCAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.43
Consensus pattern (29 bp):
TGGATCAAATTAGTCCATATATTATTAAA
Found at i:118303265 original size:29 final size:29
Alignment explanation
Indices: 118303204--118303275 Score: 81
Period size: 29 Copynumber: 2.5 Consensus size: 29
118303194 TAAGGATTGG
* * ***
118303204 ATCAAATTAGTCCTTTTATTATTAAATGG
1 ATCAAATTAGTCCATATATTATTAAAAAA
*
118303233 ATCAATTTAGTCCATATATTATTAAAAAA
1 ATCAAATTAGTCCATATATTATTAAAAAA
*
118303262 ATCAAATAAGTCCA
1 ATCAAATTAGTCCA
118303276 ATTATAACAG
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.43, C:0.12, G:0.07, T:0.38
Consensus pattern (29 bp):
ATCAAATTAGTCCATATATTATTAAAAAA
Found at i:118303914 original size:22 final size:23
Alignment explanation
Indices: 118303889--118303939 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
118303879 TAAACCCTCA
118303889 AAATCTT-TTAAAAATTATT-ATT
1 AAATCTTCTTAAAAATT-TTAATT
118303911 AAAT-TTCTTAAAAATTTTAATT
1 AAATCTTCTTAAAAATTTTAATT
118303933 AAATCTT
1 AAATCTT
118303940 AAAATTTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
21 4 0.15
22 20 0.77
23 2 0.08
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49
Consensus pattern (23 bp):
AAATCTTCTTAAAAATTTTAATT
Found at i:118304400 original size:60 final size:60
Alignment explanation
Indices: 118304305--118304430 Score: 182
Period size: 60 Copynumber: 2.1 Consensus size: 60
118304295 TTTTACTTTC
* * * * *
118304305 GTGTCGAATGAATTTTAGTTTGATTAGTATGAATATTATTGTCAATGCAAGAGGGTGTGA
1 GTGTCGAATGAATCTTAATTTGATTAGTATAAATATTATTGCCAATGCAAGAGGATGTGA
* *
118304365 GTGTCGATTGAGTCTTAATTTGATTAGTATAAATATTATTGCCAATGCAAGAGGATGTGA
1 GTGTCGAATGAATCTTAATTTGATTAGTATAAATATTATTGCCAATGCAAGAGGATGTGA
118304425 GT-TCGA
1 GTGTCGA
118304431 GTGCGTTGAA
Statistics
Matches: 59, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
59 4 0.07
60 55 0.93
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.37
Consensus pattern (60 bp):
GTGTCGAATGAATCTTAATTTGATTAGTATAAATATTATTGCCAATGCAAGAGGATGTGA
Found at i:118311848 original size:2 final size:2
Alignment explanation
Indices: 118311837--118311869 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
118311827 AGTTAACATC
118311837 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
118311870 AATTTTCAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:118329557 original size:29 final size:31
Alignment explanation
Indices: 118329505--118329565 Score: 81
Period size: 29 Copynumber: 2.0 Consensus size: 31
118329495 TTAATTTAAC
*
118329505 ATTATTTATAGAATTTTTAAAATTTTTGAAG
1 ATTATTTATAGAATTTTTAAAATTTTTCAAG
**
118329536 ATTATTT-T-GAATTTTTGTAATTTTTCAAG
1 ATTATTTATAGAATTTTTAAAATTTTTCAAG
118329565 A
1 A
118329566 GAGACTAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 19 0.70
30 1 0.04
31 7 0.26
ACGTcount: A:0.34, C:0.02, G:0.10, T:0.54
Consensus pattern (31 bp):
ATTATTTATAGAATTTTTAAAATTTTTCAAG
Found at i:118333961 original size:31 final size:31
Alignment explanation
Indices: 118333926--118333986 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
118333916 TCCTTGAATT
118333926 TTTTTTGTTAAAATTAAT-TTTAAAATTTAAC
1 TTTTTTGTTAAAATTAATCTTT-AAATTTAAC
* * *
118333957 TTTTTTTTTCAATTTAATCTTTAAATTTAA
1 TTTTTTGTTAAAATTAATCTTTAAATTTAA
118333987 ATTCCATTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 23 0.88
32 3 0.12
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.59
Consensus pattern (31 bp):
TTTTTTGTTAAAATTAATCTTTAAATTTAAC
Found at i:118337341 original size:19 final size:19
Alignment explanation
Indices: 118337317--118337354 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
118337307 GGAGAAAAGA
118337317 TGGATTCTCGATGATCCCC
1 TGGATTCTCGATGATCCCC
118337336 TGGATTCTCGATGATCCCC
1 TGGATTCTCGATGATCCCC
118337355 GAATAGGGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.16, C:0.32, G:0.21, T:0.32
Consensus pattern (19 bp):
TGGATTCTCGATGATCCCC
Found at i:118337835 original size:24 final size:25
Alignment explanation
Indices: 118337802--118337850 Score: 91
Period size: 24 Copynumber: 2.0 Consensus size: 25
118337792 GTTGAAAACA
118337802 TTTTCCAGGTTTACAACATGAAATG
1 TTTTCCAGGTTTACAACATGAAATG
118337827 TTTT-CAGGTTTACAACATGAAATG
1 TTTTCCAGGTTTACAACATGAAATG
118337851 CGTTGACATG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 20 0.83
25 4 0.17
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (25 bp):
TTTTCCAGGTTTACAACATGAAATG
Found at i:118343207 original size:23 final size:26
Alignment explanation
Indices: 118343176--118343222 Score: 64
Period size: 23 Copynumber: 1.9 Consensus size: 26
118343166 GGATTAGTTT
118343176 GATTGAAAAT-T-AAA-TAGATTATC
1 GATTGAAAATATGAAATTAGATTATC
*
118343199 GATTTAAAATATGAAATTAGATTA
1 GATTGAAAATATGAAATTAGATTA
118343223 GTTATTTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 3 0.15
26 7 0.35
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (26 bp):
GATTGAAAATATGAAATTAGATTATC
Found at i:118343650 original size:38 final size:38
Alignment explanation
Indices: 118343608--118343703 Score: 104
Period size: 40 Copynumber: 2.5 Consensus size: 38
118343598 TCATCATACT
*
118343608 TTATTAAACTATTGATTTTACTAATTTATT-AGTATAAA
1 TTATTAAACTATTGATTTTACTAATTTATTGA-TAGAAA
* **
118343646 TTATTAAACTGTTGACTTTTGTTAATTTATTGCATAGAAA
1 TTATTAAACTATTGA-TTTTACTAATTTATTG-ATAGAAA
**
118343686 TTATTGCACTATTGATTT
1 TTATTAAACTATTGATTT
118343704 CAAGGGCAAT
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
38 14 0.29
39 16 0.33
40 17 0.35
41 1 0.02
ACGTcount: A:0.33, C:0.07, G:0.09, T:0.50
Consensus pattern (38 bp):
TTATTAAACTATTGATTTTACTAATTTATTGATAGAAA
Found at i:118362184 original size:13 final size:13
Alignment explanation
Indices: 118362129--118362185 Score: 51
Period size: 15 Copynumber: 4.0 Consensus size: 13
118362119 TAGTTTGTAA
118362129 ATAATATATCATTAGT
1 ATAAT-TAT-ATTA-T
*
118362145 ATAATTATAATAT
1 ATAATTATATTAT
*
118362158 ATTAGATTAGATTAT
1 A-TA-ATTATATTAT
118362173 ATAATTATATTAT
1 ATAATTATATTAT
118362186 TTCTAAAGTT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
13 11 0.31
14 7 0.20
15 12 0.34
16 5 0.14
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.47
Consensus pattern (13 bp):
ATAATTATATTAT
Found at i:118362540 original size:31 final size:30
Alignment explanation
Indices: 118362455--118362543 Score: 99
Period size: 30 Copynumber: 2.9 Consensus size: 30
118362445 AAATAGTCCT
* *
118362455 TAAACTATTAAAAAGTTTTTGTTTAAGTCAT
1 TAAACTATT-AAAAGTTTTTATTTAAGTCAC
*
118362486 TAAACTATTAAAAGTTTTCATTTAAGTCAC
1 TAAACTATTAAAAGTTTTTATTTAAGTCAC
* *
118362516 TAAA-TCATTCGAACGTTTTTATTTAAGT
1 TAAACT-ATT-AAAAGTTTTTATTTAAGT
118362544 TATTAGACTG
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.02
30 25 0.50
31 24 0.48
ACGTcount: A:0.37, C:0.10, G:0.09, T:0.44
Consensus pattern (30 bp):
TAAACTATTAAAAGTTTTTATTTAAGTCAC
Found at i:118363760 original size:15 final size:16
Alignment explanation
Indices: 118363721--118363760 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
118363711 TTTTCCCTCA
*
118363721 TCTTTTATTCAAACTT
1 TCTTTTATTTAAACTT
118363737 T-TTTTATTTAAA-TT
1 TCTTTTATTTAAACTT
118363751 TCTTTTATTT
1 TCTTTTATTT
118363761 TTTCCTCGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 3 0.14
15 18 0.82
16 1 0.05
ACGTcount: A:0.23, C:0.10, G:0.00, T:0.68
Consensus pattern (16 bp):
TCTTTTATTTAAACTT
Found at i:118364765 original size:27 final size:27
Alignment explanation
Indices: 118364735--118364791 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
118364725 CATGGTCCTC
118364735 CATCTCTTTCCCCATATCATTCACCAA
1 CATCTCTTTCCCCATATCATTCACCAA
118364762 CATCTCTTTCCCCATATCATTCACCAA
1 CATCTCTTTCCCCATATCATTCACCAA
118364789 CAT
1 CAT
118364792 TAGCACCGCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.26, C:0.40, G:0.00, T:0.33
Consensus pattern (27 bp):
CATCTCTTTCCCCATATCATTCACCAA
Found at i:118379497 original size:28 final size:26
Alignment explanation
Indices: 118379465--118379517 Score: 63
Period size: 28 Copynumber: 2.0 Consensus size: 26
118379455 ATCCACAAAA
118379465 TAATA-TTTAACCTAATCTTAGTTATTTT
1 TAATAGTTTAA-CTAAT-TTA-TTATTTT
*
118379493 TAATAGTTTTACTAATTTATTATTT
1 TAATAGTTTAACTAATTTATTATTT
118379518 ATATTTAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 6 0.26
27 3 0.13
28 10 0.43
29 4 0.17
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.57
Consensus pattern (26 bp):
TAATAGTTTAACTAATTTATTATTTT
Found at i:118383741 original size:29 final size:29
Alignment explanation
Indices: 118383709--118383764 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
118383699 TCAAGATACT
*
118383709 TTTAATAATATTAA-AATTAAATTAATCAA
1 TTTAATAATA-AAATAATTAAATTAATCAA
*
118383738 TTTAATAATAAAATAATTAATTTAATC
1 TTTAATAATAAAATAATTAAATTAATC
118383765 CAATCCCACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 2 0.08
29 22 0.92
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.43
Consensus pattern (29 bp):
TTTAATAATAAAATAATTAAATTAATCAA
Found at i:118383742 original size:20 final size:19
Alignment explanation
Indices: 118383710--118383763 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 19
118383700 CAAGATACTT
118383710 TTAATAATATTAA-AATTAAA
1 TTAATAAT-TTAATAA-TAAA
118383730 TTAATCAATTTAATAATAAA
1 TTAAT-AATTTAATAATAAA
*
118383750 ATAATTAATTTAAT
1 TTAA-TAATTTAAT
118383764 CCAATCCCAC
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
20 24 0.80
21 6 0.20
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (19 bp):
TTAATAATTTAATAATAAA
Found at i:118391849 original size:20 final size:22
Alignment explanation
Indices: 118391815--118391860 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
118391805 CAGAAGGAGT
*
118391815 GAGTAGTACTTCGCA-CAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
118391836 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
118391857 GAGT
1 GAGT
118391861 TTGAGCAGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.22, C:0.20, G:0.37, T:0.22
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:118393764 original size:131 final size:131
Alignment explanation
Indices: 118393587--118393845 Score: 421
Period size: 131 Copynumber: 2.0 Consensus size: 131
118393577 AAACCCCATA
* *
118393587 CATTAAATCAAAGAGCAAATTAATCATTTTTATAAAAAAATTATTTATTTATACGGTTAAAAACT
1 CATTAAATCAAAGAGCAAATTAATCATTTCTATAAAAAAATTATTTATTTATACAGTTAAAAACT
* *
118393652 GACGTGCCACATGTACATCATGCTGGTGTACAAAGACCAGCTTTTAACCGTAGGAATGGATGAGT
66 GACGCGCAACATGTACATCATGCTGGTGTACAAAGACCAGCTTTTAACCGTAGGAATGGATGAGT
118393717 G
131 G
* * *
118393718 CATTAAATCAAAGAGCAAATTAATTATTTCTAT-AAAAATTTCATTTATTTATACAGTTAAAAAT
1 CATTAAATCAAAGAGCAAATTAATCATTTCTATAAAAAAATT-ATTTATTTATACAGTTAAAAAC
* *
118393782 TGACGCGCAACATGTACATCATGTTGGTGTACAAAGACCAGCTTTTAACTGTAGGAATGGATGA
65 TGACGCGCAACATGTACATCATGCTGGTGTACAAAGACCAGCTTTTAACCGTAGGAATGGATGA
118393846 AATTCTAATA
Statistics
Matches: 118, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
130 7 0.06
131 111 0.94
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.32
Consensus pattern (131 bp):
CATTAAATCAAAGAGCAAATTAATCATTTCTATAAAAAAATTATTTATTTATACAGTTAAAAACT
GACGCGCAACATGTACATCATGCTGGTGTACAAAGACCAGCTTTTAACCGTAGGAATGGATGAGT
G
Found at i:118397395 original size:31 final size:31
Alignment explanation
Indices: 118397330--118397402 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 31
118397320 AAAAAAAATT
118397330 AATAATTTAATGAGTTAAATAAAAACTTTCA
1 AATAATTTAATGAGTTAAATAAAAACTTTCA
* * * * * *
118397361 AATAGTTTAGTGATTTAAATGAAAATTTTTA
1 AATAATTTAATGAGTTAAATAAAAACTTTCA
118397392 AATAATTTAAT
1 AATAATTTAAT
118397403 AATTATTTAA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.48, C:0.03, G:0.08, T:0.41
Consensus pattern (31 bp):
AATAATTTAATGAGTTAAATAAAAACTTTCA
Found at i:118399932 original size:8 final size:8
Alignment explanation
Indices: 118399919--118399945 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
118399909 CTGCAATATT
118399919 TGTGTAAA
1 TGTGTAAA
118399927 TGTGTAAA
1 TGTGTAAA
118399935 TGTGTAAA
1 TGTGTAAA
118399943 TGT
1 TGT
118399946 TCTAAATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.26, T:0.41
Consensus pattern (8 bp):
TGTGTAAA
Found at i:118401919 original size:27 final size:27
Alignment explanation
Indices: 118401867--118401919 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
118401857 AAAAGTTATC
** *
118401867 AAGTTTTGAGATTAATTTGAATAAAAA
1 AAGTTTTGAGACCAATTGGAATAAAAA
118401894 AAGTTTTGAGACCAAGTTGGAA-AAAA
1 AAGTTTTGAGACCAA-TTGGAATAAAA
118401920 GTTTCCAAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 17 0.77
28 5 0.23
ACGTcount: A:0.47, C:0.04, G:0.19, T:0.30
Consensus pattern (27 bp):
AAGTTTTGAGACCAATTGGAATAAAAA
Found at i:118404040 original size:2 final size:2
Alignment explanation
Indices: 118404033--118404058 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
118404023 TGCCTGGTTG
118404033 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
118404059 ATATTTAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:118406432 original size:21 final size:22
Alignment explanation
Indices: 118406398--118406442 Score: 83
Period size: 21 Copynumber: 2.1 Consensus size: 22
118406388 TATGTTCTTA
118406398 TTAATTAGATTAAAGAGTAAAT
1 TTAATTAGATTAAAGAGTAAAT
118406420 TTAATTA-ATTAAAGAGTAAAT
1 TTAATTAGATTAAAGAGTAAAT
118406441 TT
1 TT
118406443 GTCATTATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.40
Consensus pattern (22 bp):
TTAATTAGATTAAAGAGTAAAT
Found at i:118411505 original size:22 final size:22
Alignment explanation
Indices: 118411480--118411529 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 22
118411470 AAAACCCTGC
*
118411480 TATTTTTGCTGTTGTTTTTTCA
1 TATTTTTGCTGTTGTTTTCTCA
*
118411502 TA-TTTTACTGTTGTTTTCTCA
1 TATTTTTGCTGTTGTTTTCTCA
118411523 T-TTTTTG
1 TATTTTTG
118411530 TCATTGTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 22 0.92
22 2 0.08
ACGTcount: A:0.10, C:0.10, G:0.12, T:0.68
Consensus pattern (22 bp):
TATTTTTGCTGTTGTTTTCTCA
Found at i:118411565 original size:16 final size:16
Alignment explanation
Indices: 118411544--118411574 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
118411534 TGTTTTACTA
118411544 TCATTTAATTATTATG
1 TCATTTAATTATTATG
118411560 TCATTTAATTATTAT
1 TCATTTAATTATTAT
118411575 ATTGCTACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.58
Consensus pattern (16 bp):
TCATTTAATTATTATG
Found at i:118411721 original size:14 final size:16
Alignment explanation
Indices: 118411704--118411737 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
118411694 TATAAATACT
118411704 TTTTTA-AAA-ATTTA
1 TTTTTAGAAATATTTA
118411718 TTTTTAGAAATATTTA
1 TTTTTAGAAATATTTA
118411734 TTTT
1 TTTT
118411738 AATATTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.33
15 3 0.17
16 9 0.50
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (16 bp):
TTTTTAGAAATATTTA
Found at i:118417183 original size:15 final size:16
Alignment explanation
Indices: 118417165--118417195 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
118417155 ATTTGAAAAT
118417165 TAATTAA-AAATTTTA
1 TAATTAATAAATTTTA
118417180 TAATTAATAAATTTTA
1 TAATTAATAAATTTTA
118417196 ATATCTGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TAATTAATAAATTTTA
Found at i:118425678 original size:51 final size:51
Alignment explanation
Indices: 118425602--118425704 Score: 197
Period size: 51 Copynumber: 2.0 Consensus size: 51
118425592 TGCCAAAGCT
118425602 TATAACAACATGATCCTCAATAGCTGCGAGCCCTATAATACTAACAATGGA
1 TATAACAACATGATCCTCAATAGCTGCGAGCCCTATAATACTAACAATGGA
*
118425653 TATAACAACATGATCCTCAATAGCTGCGAGCCGTATAATACTAACAATGGA
1 TATAACAACATGATCCTCAATAGCTGCGAGCCCTATAATACTAACAATGGA
118425704 T
1 T
118425705 TTTAAAACTA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.39, C:0.22, G:0.15, T:0.24
Consensus pattern (51 bp):
TATAACAACATGATCCTCAATAGCTGCGAGCCCTATAATACTAACAATGGA
Found at i:118429143 original size:12 final size:12
Alignment explanation
Indices: 118429110--118429143 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
118429100 TGAAATAGTT
118429110 GGTGGTGGTGGC
1 GGTGGTGGTGGC
*
118429122 GGCGGTGGTGGC
1 GGTGGTGGTGGC
*
118429134 GGTGGCGGTG
1 GGTGGTGGTG
118429144 AAATAGGGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.12, G:0.68, T:0.21
Consensus pattern (12 bp):
GGTGGTGGTGGC
Found at i:118432788 original size:31 final size:31
Alignment explanation
Indices: 118432730--118432788 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
118432720 AACAATTTGA
* * *
118432730 CTCTTTTTAGAAGTTTGATAGTCAAATTCGT
1 CTCTTTTTAAAAGGTTGATAGGCAAATTCGT
118432761 CTCTTTTTAAAAGGTTGA-AGGCTAAATT
1 CTCTTTTTAAAAGGTTGATAGGC-AAATT
118432789 TAGCTTAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 3 0.12
31 21 0.88
ACGTcount: A:0.29, C:0.12, G:0.17, T:0.42
Consensus pattern (31 bp):
CTCTTTTTAAAAGGTTGATAGGCAAATTCGT
Found at i:118435331 original size:86 final size:86
Alignment explanation
Indices: 118435230--118435406 Score: 327
Period size: 86 Copynumber: 2.1 Consensus size: 86
118435220 AACCCCTATG
* *
118435230 CATTAGATCAAAAAACAAAATGGTCATTTTATTAAAAATTTAACGTTATAAACTGTCTTGGCTAA
1 CATTAGATCAAAAAACAAAATGATCATTTTATTAAAAATTTAACGTTATAAACTGACTTGGCTAA
118435295 TGAAATAACCAAACAATTAAA
66 TGAAATAACCAAACAATTAAA
*
118435316 CATTAGATCAAAAAACAAAATGATCATTTTATTAAAAATTTAATGTTATAAACTGACTTGGCTAA
1 CATTAGATCAAAAAACAAAATGATCATTTTATTAAAAATTTAACGTTATAAACTGACTTGGCTAA
118435381 TGAAATAACCAAACAATTAAA
66 TGAAATAACCAAACAATTAAA
118435402 CATTA
1 CATTA
118435407 CATGTCACGT
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
86 88 1.00
ACGTcount: A:0.49, C:0.12, G:0.08, T:0.31
Consensus pattern (86 bp):
CATTAGATCAAAAAACAAAATGATCATTTTATTAAAAATTTAACGTTATAAACTGACTTGGCTAA
TGAAATAACCAAACAATTAAA
Found at i:118455988 original size:32 final size:32
Alignment explanation
Indices: 118455947--118456011 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
118455937 AACTTGCTTG
118455947 ACAAACGGACCCATTCCTTAACAGCCACACCA
1 ACAAACGGACCCATTCCTTAACAGCCACACCA
118455979 ACAAACGGACCCATTCCTTAACAGCCACACCA
1 ACAAACGGACCCATTCCTTAACAGCCACACCA
118456011 A
1 A
118456012 ATTCCAACTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.40, G:0.09, T:0.12
Consensus pattern (32 bp):
ACAAACGGACCCATTCCTTAACAGCCACACCA
Found at i:118462018 original size:29 final size:28
Alignment explanation
Indices: 118461943--118462018 Score: 66
Period size: 28 Copynumber: 2.7 Consensus size: 28
118461933 AAATTTTAAA
* * *
118461943 AAATTTTCATTTAAGTCCTTTAATTTTTT
1 AAATTTTCAATTAAG-CTTTTAAGTTTTT
* *
118461972 AAATTTTACCA-T-ACCTTTTAAAGTTTTT
1 AAATTTT-CAATTAAGCTTTT-AAGTTTTT
118462000 AAATTTTCAATTAAGCTTT
1 AAATTTTCAATTAAGCTTT
118462019 AAAAACTTTT
Statistics
Matches: 36, Mismatches: 7, Indels: 8
0.71 0.14 0.16
Matches are distributed among these distances:
27 6 0.17
28 16 0.44
29 13 0.36
30 1 0.03
ACGTcount: A:0.32, C:0.12, G:0.04, T:0.53
Consensus pattern (28 bp):
AAATTTTCAATTAAGCTTTTAAGTTTTT
Found at i:118466895 original size:4 final size:4
Alignment explanation
Indices: 118466876--118466915 Score: 53
Period size: 4 Copynumber: 10.0 Consensus size: 4
118466866 TCGTTGATGG
* * *
118466876 TGTA AGTA TATA TGTA TGTA TGTA TGTA TGTA TGCA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
118466916 ATTACAGTCG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.30, C:0.03, G:0.23, T:0.45
Consensus pattern (4 bp):
TGTA
Found at i:118467843 original size:8 final size:8
Alignment explanation
Indices: 118467830--118467855 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
118467820 TTAACATAAA
118467830 TTATTGAT
1 TTATTGAT
118467838 TTATTGAT
1 TTATTGAT
118467846 TTATTGAT
1 TTATTGAT
118467854 TT
1 TT
118467856 TCAAGTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.12, T:0.65
Consensus pattern (8 bp):
TTATTGAT
Found at i:118470464 original size:11 final size:12
Alignment explanation
Indices: 118470450--118470482 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
118470440 TATATATTTT
118470450 AAAATT-ATATA
1 AAAATTAATATA
118470461 AAAATTAATAT-
1 AAAATTAATATA
118470472 AAAATTAATAT
1 AAAATTAATAT
118470483 GGGCGGATCG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 17 0.81
12 4 0.19
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:118473142 original size:72 final size:72
Alignment explanation
Indices: 118473053--118473396 Score: 530
Period size: 72 Copynumber: 4.8 Consensus size: 72
118473043 GGTCACTGTC
* * * *
118473053 CCACCAG-TGACAGTCCCTCCAATAGTAAAACCA-CCAGTTACAGTCCCACCAGTGACTGTTCCT
1 CCACCAGTTGA-ACTCCCTCCGATTGCAAAACCACCCA-TTACAGTCCCACCAGTGACTGTTCCT
*
118473116 CCTGTGAAG
64 CCTGTAAAG
118473125 CCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
1 CCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
118473190 TGTAAAG
66 TGTAAAG
*
118473197 CCACCTGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
1 CCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
*
118473262 TGTGAAG
66 TGTAAAG
118473269 CCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
1 CCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
118473334 TGTAAAG
66 TGTAAAG
* * * * * * *
118473341 CCACCTGTTGATCTCCCTCCAATTGCTAAGCCACCCATTACGGTTCCACCAGTGAC
1 CCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGAC
118473397 CATCCCTCCA
Statistics
Matches: 254, Mismatches: 16, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
72 248 0.98
73 6 0.02
ACGTcount: A:0.25, C:0.37, G:0.15, T:0.23
Consensus pattern (72 bp):
CCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
TGTAAAG
Found at i:118473253 original size:144 final size:145
Alignment explanation
Indices: 118473066--118473627 Score: 779
Period size: 144 Copynumber: 3.8 Consensus size: 145
118473056 CCAGTGACAG
* *
118473066 TCCCTCCAATAGTAAAACCA-CCAGTTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACC
1 TCCCTCCAATTGCAAAACCACCCAGTTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACC
*
118473130 AGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAA
66 AGTTGAACTCCCTCCAATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAA
118473195 AGCCACCTGTTGAAC
131 AGCCACCTGTTGAAC
*
118473210 TCCCTCCGATTGCAAAACCACCCA-TTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACC
1 TCCCTCCAATTGCAAAACCACCCAGTTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACC
*
118473274 AGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAA
66 AGTTGAACTCCCTCCAATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAA
*
118473339 AGCCACCTGTTGATC
131 AGCCACCTGTTGAAC
* * *
118473354 TCCCTCCAATTGCTAAGCCACCCATTACGGTTCCACCAGTGACCATCCCTCCAGTGACTGTTCCT
1 TCCCTCCAATTGCAAAACCACCC---A--GTT--A-CA--G----TCCCACCAGTGACTGTTCCT
* * * * *
118473419 CCTGTTAAGCCACCTGTTGATCTCCCTCCAATTGCAAAGCCACCCATTACAGTTCCACCAGTGAC
52 CCTGTGAAGCCACCAGTTGAACTCCCTCCAATTGCAAAACCACCCATTACAGTCCCACCAGTGAC
* * *
118473484 TGTTCCTCCTGTGAAGCCACCAGTTGAGC
117 TGTTCCTCCTGTAAAGCCACCTGTTGAAC
*
118473513 TCCCTCCAATTGCAAAGCCACCCA-TTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACC
1 TCCCTCCAATTGCAAAACCACCCAGTTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACC
* * * *
118473577 AGTTGACCTCCCTCCAATTGCAAAACCGCCCATCACAGTCCCTCCAGTGAC
66 AGTTGAACTCCCTCCAATTGCAAAACCACCCATTACAGTCCCACCAGTGAC
118473628 CCTCCCAGTC
Statistics
Matches: 375, Mismatches: 27, Indels: 32
0.86 0.06 0.07
Matches are distributed among these distances:
144 232 0.62
145 3 0.01
147 1 0.00
148 1 0.00
150 4 0.01
151 1 0.00
152 1 0.00
153 4 0.01
155 1 0.00
156 1 0.00
159 126 0.34
ACGTcount: A:0.24, C:0.38, G:0.15, T:0.23
Consensus pattern (145 bp):
TCCCTCCAATTGCAAAACCACCCAGTTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACC
AGTTGAACTCCCTCCAATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAA
AGCCACCTGTTGAAC
Found at i:118473462 original size:72 final size:72
Alignment explanation
Indices: 118473399--118473627 Score: 368
Period size: 72 Copynumber: 3.2 Consensus size: 72
118473389 CCAGTGACCA
* * * *
118473399 TCCCTCCAGTGACTGTTCCTCCTGTTAAGCCACCTGTTGATCTCCCTCCAATTGCAAAGCCACCC
1 TCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAGCCACCC
118473464 ATTACAG
66 ATTACAG
* *
118473471 TTCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAGCTCCCTCCAATTGCAAAGCCACCC
1 TCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAGCCACCC
118473536 ATTACAG
66 ATTACAG
* *
118473543 TCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCGCCC
1 TCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAGCCACCC
*
118473608 ATCACAG
66 ATTACAG
*
118473615 TCCCTCCAGTGAC
1 TCCCACCAGTGAC
118473628 CCTCCCAGTC
Statistics
Matches: 146, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
72 146 1.00
ACGTcount: A:0.22, C:0.38, G:0.15, T:0.24
Consensus pattern (72 bp):
TCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAGCCACCC
ATTACAG
Found at i:118473462 original size:159 final size:159
Alignment explanation
Indices: 118473240--118473627 Score: 518
Period size: 159 Copynumber: 2.5 Consensus size: 159
118473230 CCCATTACAG
*
118473240 TCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAACTCCCTCCGATTGCAAAACCACCC
1 TCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAACTCCCTCCAATTGCAAAACCACCC
* * *
118473305 ATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCCCTCCAATTGCTAA
66 ATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGAGCTCCCTCCAATTGCAAA
* *
118473370 GCCACCCATTACGGTTCCACCAGTGACCA
131 GCCACCCATTACAGTCCCACCAGTGACCA
* * * * *
118473399 TCCCTCCAGTGACTGTTCCTCCTGTTAAGCCACCTGTTGATCTCCCTCCAATTGCAAAGCCACCC
1 TCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAACTCCCTCCAATTGCAAAACCACCC
* *
118473464 ATTACAGTTCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAGCTCCCTCCAATTGCAAA
66 ATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGAGCTCCCTCCAATTGCAAA
118473529 GCCACCCA-T----T---A-CA--G----
131 GCCACCCATTACAGTCCCACCAGTGACCA
* *
118473543 TCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCGCCC
1 TCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAACTCCCTCCAATTGCAAAACCACCC
* *
118473608 ATCACAGTCCCTCCAGTGAC
66 ATTACAGTCCCACCAGTGAC
118473628 CCTCCCAGTC
Statistics
Matches: 209, Mismatches: 20, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
144 76 0.36
148 1 0.00
150 2 0.01
151 1 0.00
154 1 0.00
158 1 0.00
159 127 0.61
ACGTcount: A:0.23, C:0.38, G:0.15, T:0.24
Consensus pattern (159 bp):
TCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAACTCCCTCCAATTGCAAAACCACCC
ATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGAGCTCCCTCCAATTGCAAA
GCCACCCATTACAGTCCCACCAGTGACCA
Found at i:118473486 original size:231 final size:242
Alignment explanation
Indices: 118473168--118473883 Score: 887
Period size: 231 Copynumber: 2.9 Consensus size: 242
118473158 CCCATTACAG
* *
118473168 TCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGAACTCCCTCCGATTGCAAAACCACCC
1 TCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGAACTCCCTCCAATTGCAAAACCACCC
*
118473233 ATTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAACTCCCTCCGATTGCAAA
66 ATTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAACTCCCTCCAATTGCAAA
* *
118473298 ACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCCCTCCAA
131 ACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAA
* *
118473363 TTGC-TAA-G-CCA-CCCA-T-TAC-G-G-T-T-CCACCAGTGACCA
196 TTGCAAAACGCCCATCACAGTCTACAGTGCTCTCCCACCAGTGACCA
* * *
118473399 TCCCTCCAGTGACTGTTCCTCCTGTTAAGCCACCTGTTGATCTCCCTCCAATTGCAAAGCCACCC
1 TCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGAACTCCCTCCAATTGCAAAACCACCC
* *
118473464 ATTACAGTTCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAGCTCCCTCCAATTGCAAA
66 ATTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAACTCCCTCCAATTGCAAA
* *
118473529 GCCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAA
131 ACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAA
* * * **
118473594 TTGCAAAACCGCCCATCACAGTCCCTCCAGTGACCCTCCCAGTCCCTCCAGTTACTG
196 TTGCAAAA-CGCCCATCACAGT--CTACAGTG---CT--C--TCCCACCAGTGACCA
* *
118473651 TCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACCC
1 TCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGAACTCCCTCCAATTGCAAAACCACCC
* *
118473716 ATCACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAA
66 ATTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAACTCCCTCCAATTGCAAA
* *
118473781 ACCACCCATCACAGTCCCTCCGGTAACTGTCCCTCCAGTGACTGTTCCTCCCGTAAAGCCACCAG
131 ACCACCCATTACAGT--C-CC----A--------CCAGTGACTGTTCCTCCTGTAAAGCCACCAG
*
118473846 TTGACCTCCCTCCAATTGCAAAACCACCCATCACAGTC
181 TTGACCTCCCTCCAATTGCAAAA-CGCCCATCACAGTC
118473884 CCACCAGTGA
Statistics
Matches: 418, Mismatches: 31, Indels: 38
0.86 0.06 0.08
Matches are distributed among these distances:
231 187 0.45
232 2 0.00
234 1 0.00
235 3 0.01
236 3 0.01
237 1 0.00
240 2 0.00
241 1 0.00
242 1 0.00
246 1 0.00
251 1 0.00
252 145 0.35
254 1 0.00
255 2 0.00
259 1 0.00
265 1 0.00
267 65 0.16
ACGTcount: A:0.23, C:0.39, G:0.14, T:0.23
Consensus pattern (242 bp):
TCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGAACTCCCTCCAATTGCAAAACCACCC
ATTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAACTCCCTCCAATTGCAAA
ACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAA
TTGCAAAACGCCCATCACAGTCTACAGTGCTCTCCCACCAGTGACCA
Found at i:118473492 original size:87 final size:87
Alignment explanation
Indices: 118473312--118473483 Score: 308
Period size: 87 Copynumber: 2.0 Consensus size: 87
118473302 CCCATTACAG
* *
118473312 TCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCCCTCCAATTGCTAAGCCACCC
1 TCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCCCTCCAATTGCAAAGCCACCC
*
118473377 ATTACGGTTCCACCAGTGACCA
66 ATTACAGTTCCACCAGTGACCA
*
118473399 TCCCTCCAGTGACTGTTCCTCCTGTTAAGCCACCTGTTGATCTCCCTCCAATTGCAAAGCCACCC
1 TCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCCCTCCAATTGCAAAGCCACCC
118473464 ATTACAGTTCCACCAGTGAC
66 ATTACAGTTCCACCAGTGAC
118473484 TGTTCCTCCT
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 81 1.00
ACGTcount: A:0.22, C:0.38, G:0.15, T:0.26
Consensus pattern (87 bp):
TCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCCCTCCAATTGCAAAGCCACCC
ATTACAGTTCCACCAGTGACCA
Found at i:118473655 original size:15 final size:15
Alignment explanation
Indices: 118473635--118473672 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
118473625 GACCCTCCCA
*
118473635 GTCCCTCCAGTTACT
1 GTCCCTCCAGTGACT
118473650 GTCCCTCCAGTGACT
1 GTCCCTCCAGTGACT
*
118473665 GTTCCTCC
1 GTCCCTCC
118473673 TGTAAAGCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.11, C:0.42, G:0.16, T:0.32
Consensus pattern (15 bp):
GTCCCTCCAGTGACT
Found at i:118473674 original size:108 final size:108
Alignment explanation
Indices: 118473537--118473735 Score: 353
Period size: 108 Copynumber: 1.8 Consensus size: 108
118473527 AAGCCACCCA
*
118473537 TTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAA
1 TTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAA
* *
118473602 CCGCCCATCACAGTCCCTCCAGTGACCCTCCCAGTCCCTCCAG
66 CCACCCATCACAGTCCCACCAGTGACCCTCCCAGTCCCTCCAG
* *
118473645 TTACTGTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAA
1 TTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAA
118473710 CCACCCATCACAGTCCCACCAGTGAC
66 CCACCCATCACAGTCCCACCAGTGAC
118473736 TGTTCCTCCT
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
108 86 1.00
ACGTcount: A:0.23, C:0.41, G:0.14, T:0.22
Consensus pattern (108 bp):
TTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAA
CCACCCATCACAGTCCCACCAGTGACCCTCCCAGTCCCTCCAG
Found at i:118473683 original size:180 final size:180
Alignment explanation
Indices: 118473476--118473801 Score: 607
Period size: 180 Copynumber: 1.8 Consensus size: 180
118473466 TACAGTTCCA
* * * *
118473476 CCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAGCTCCCTCCAATTGCAAAGCCACCCATTAC
1 CCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACCCATCAC
*
118473541 AGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCGC
66 AGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCAC
118473606 CCATCACAGTCCCTCCAGTGACCCTCCCAGTCCCTCCAGTTACTGTCCCT
131 CCATCACAGTCCCTCCAGTGACCCTCCCAGTCCCTCCAGTTACTGTCCCT
118473656 CCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACCCATCAC
1 CCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACCCATCAC
118473721 AGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCAC
66 AGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCAC
118473786 CCATCACAGTCCCTCC
131 CCATCACAGTCCCTCC
118473802 GGTAACTGTC
Statistics
Matches: 141, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
180 141 1.00
ACGTcount: A:0.23, C:0.41, G:0.14, T:0.22
Consensus pattern (180 bp):
CCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACCCATCAC
AGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCAC
CCATCACAGTCCCTCCAGTGACCCTCCCAGTCCCTCCAGTTACTGTCCCT
Found at i:118473736 original size:72 final size:72
Alignment explanation
Indices: 118473650--118473816 Score: 289
Period size: 72 Copynumber: 2.3 Consensus size: 72
118473640 TCCAGTTACT
118473650 GTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
1 GTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
118473715 CATCACA
66 CATCACA
* *
118473722 GTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
1 GTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
118473787 CATCACA
66 CATCACA
* * *
118473794 GTCCCTCCGGTAACTGTCCCTCC
1 GTCCCTCCAGTGACTGTTCCTCC
118473817 AGTGACTGTT
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 89 1.00
ACGTcount: A:0.23, C:0.41, G:0.14, T:0.22
Consensus pattern (72 bp):
GTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
CATCACA
Found at i:118473814 original size:15 final size:15
Alignment explanation
Indices: 118473794--118473836 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
118473784 ACCCATCACA
*
118473794 GTCCCTCCGGTAACT
1 GTCCCTCCAGTAACT
*
118473809 GTCCCTCCAGTGACT
1 GTCCCTCCAGTAACT
* *
118473824 GTTCCTCCCGTAA
1 GTCCCTCCAGTAA
118473837 AGCCACCAGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.14, C:0.40, G:0.19, T:0.28
Consensus pattern (15 bp):
GTCCCTCCAGTAACT
Found at i:118473868 original size:87 final size:87
Alignment explanation
Indices: 118473722--118473885 Score: 301
Period size: 87 Copynumber: 1.9 Consensus size: 87
118473712 ACCCATCACA
* *
118473722 GTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
1 GTCCCACCAGTGACTGTTCCTCCCGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
118473787 CATCACAGTCCCTCCGGTAACT
66 CATCACAGTCCCTCCGGTAACT
*
118473809 GTCCCTCCAGTGACTGTTCCTCCCGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
1 GTCCCACCAGTGACTGTTCCTCCCGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
118473874 CATCACAGTCCC
66 CATCACAGTCCC
118473886 ACCAGTGACC
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
87 74 1.00
ACGTcount: A:0.23, C:0.41, G:0.14, T:0.21
Consensus pattern (87 bp):
GTCCCACCAGTGACTGTTCCTCCCGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
CATCACAGTCCCTCCGGTAACT
Found at i:118476213 original size:13 final size:13
Alignment explanation
Indices: 118476195--118476219 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
118476185 TTTACCATCG
118476195 ATTTACTTTACCA
1 ATTTACTTTACCA
118476208 ATTTACTTTACC
1 ATTTACTTTACC
118476220 CTGACGGATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.24, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTTACTTTACCA
Found at i:118478896 original size:17 final size:18
Alignment explanation
Indices: 118478866--118478899 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
118478856 ATACTCCATG
118478866 TATACATTTAAAAATATA
1 TATACATTTAAAAATATA
*
118478884 TATA-ATTTTAAAATAT
1 TATACATTTAAAAATAT
118478900 TAAAATATGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (18 bp):
TATACATTTAAAAATATA
Found at i:118486937 original size:42 final size:42
Alignment explanation
Indices: 118486878--118486964 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
118486868 TAGTAAGCAA
118486878 ATTATTTTTTTAAATGAGAAATGCTTGTATTTATGATTTAAT
1 ATTATTTTTTTAAATGAGAAATGCTTGTATTTATGATTTAAT
118486920 ATTATTTTTTTAAATGAGAAATGCTTGTATTTATGATTTAAT
1 ATTATTTTTTTAAATGAGAAATGCTTGTATTTATGATTTAAT
118486962 ATT
1 ATT
118486965 TTCTTATAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.33, C:0.02, G:0.11, T:0.53
Consensus pattern (42 bp):
ATTATTTTTTTAAATGAGAAATGCTTGTATTTATGATTTAAT
Found at i:118486952 original size:21 final size:21
Alignment explanation
Indices: 118486886--118486952 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
118486876 AAATTATTTT
118486886 TTTAAATGAGAAATGCTTGTA
1 TTTAAATGAGAAATGCTTGTA
* ** *
118486907 TTT--ATGATTTAATATTATT-TT
1 TTTAAATGA--GAA-ATGCTTGTA
118486928 TTTAAATGAGAAATGCTTGTA
1 TTTAAATGAGAAATGCTTGTA
118486949 TTTA
1 TTTA
118486953 TGATTTAATA
Statistics
Matches: 32, Mismatches: 8, Indels: 12
0.62 0.15 0.23
Matches are distributed among these distances:
19 4 0.12
20 4 0.12
21 16 0.50
22 4 0.12
23 4 0.12
ACGTcount: A:0.34, C:0.03, G:0.13, T:0.49
Consensus pattern (21 bp):
TTTAAATGAGAAATGCTTGTA
Found at i:118493594 original size:18 final size:17
Alignment explanation
Indices: 118493561--118493608 Score: 60
Period size: 18 Copynumber: 2.8 Consensus size: 17
118493551 AAATATATTG
*
118493561 TTTAACAATATTTTTAT
1 TTTAAAAATATTTTTAT
118493578 TTTAAAAATACTTTTTAT
1 TTTAAAAATA-TTTTTAT
* *
118493596 CTCAAAAATATTT
1 TTTAAAAATATTT
118493609 CTTAAAAACA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 12 0.44
18 15 0.56
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (17 bp):
TTTAAAAATATTTTTAT
Found at i:118503056 original size:12 final size:12
Alignment explanation
Indices: 118503039--118503064 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
118503029 TACATATATG
118503039 TACACACATACA
1 TACACACATACA
118503051 TACACACATACA
1 TACACACATACA
118503063 TA
1 TA
118503065 TAGCTAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19
Consensus pattern (12 bp):
TACACACATACA
Found at i:118509967 original size:18 final size:17
Alignment explanation
Indices: 118509946--118509979 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
118509936 ACAAATGATC
*
118509946 TCAAATTTCAAAATTCAT
1 TCAAAGTTC-AAATTCAT
118509964 TCAAAGTTCAAATTCA
1 TCAAAGTTCAAATTCA
118509980 GTGAGTGAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.44, C:0.18, G:0.03, T:0.35
Consensus pattern (17 bp):
TCAAAGTTCAAATTCAT
Found at i:118512436 original size:25 final size:26
Alignment explanation
Indices: 118512408--118512456 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
118512398 TTTAATATTA
*
118512408 TTTTCTATATTATCTTTTT-GTATCG
1 TTTTATATATTATCTTTTTCGTATCG
* *
118512433 TTTTATATTTTATTTTTTTCGTAT
1 TTTTATATATTATCTTTTTCGTAT
118512457 TATATTTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 16 0.80
26 4 0.20
ACGTcount: A:0.16, C:0.08, G:0.06, T:0.69
Consensus pattern (26 bp):
TTTTATATATTATCTTTTTCGTATCG
Found at i:118514426 original size:12 final size:12
Alignment explanation
Indices: 118514409--118514451 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
118514399 TGCGTATTAC
118514409 AATTGCTAGTGT
1 AATTGCTAGTGT
* **
118514421 AATTGCGTATTAC
1 AATTGC-TAGTGT
118514434 AATTGCTAGTGT
1 AATTGCTAGTGT
118514446 AATTGC
1 AATTGC
118514452 AGCGACTTCG
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
12 15 0.62
13 9 0.38
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.40
Consensus pattern (12 bp):
AATTGCTAGTGT
Found at i:118514433 original size:25 final size:25
Alignment explanation
Indices: 118514399--118514451 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
118514389 TCAAGAGAAA
118514399 TGCGTATTACAATTGCTAGTGTAAT
1 TGCGTATTACAATTGCTAGTGTAAT
118514424 TGCGTATTACAATTGCTAGTGTAAT
1 TGCGTATTACAATTGCTAGTGTAAT
118514449 TGC
1 TGC
118514452 AGCGACTTCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.40
Consensus pattern (25 bp):
TGCGTATTACAATTGCTAGTGTAAT
Found at i:118517722 original size:43 final size:44
Alignment explanation
Indices: 118517661--118517759 Score: 125
Period size: 43 Copynumber: 2.3 Consensus size: 44
118517651 ATCCTAATTG
* * *
118517661 AGAAAATAGTTCCCTTATTCTAATAAACTACTAA-AACATAAAA-
1 AGAAAATAATTTCTTTATTCTAATAAACTACTAACAA-ATAAAAT
*
118517704 AGAAAATAATTTCTTTATTCTAGTAAACTACTAACAAATAAAAT
1 AGAAAATAATTTCTTTATTCTAATAAACTACTAACAAATAAAAT
118517748 A-AAAAT-ATTTCT
1 AGAAAATAATTTCT
118517760 AGAATATGAA
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
42 6 0.12
43 41 0.82
44 3 0.06
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (44 bp):
AGAAAATAATTTCTTTATTCTAATAAACTACTAACAAATAAAAT
Found at i:118521666 original size:43 final size:44
Alignment explanation
Indices: 118521605--118521697 Score: 145
Period size: 43 Copynumber: 2.2 Consensus size: 44
118521595 TCCTAATTGG
*
118521605 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA-A
1 GAAAATAATTCCCTTATTCTAATAAACTACTAAAACATAAAATA
* *
118521648 GAAAATAATTCCCTTATTCTAGTAAACTACTAAAAGATAAAATA
1 GAAAATAATTCCCTTATTCTAATAAACTACTAAAACATAAAATA
118521692 -AAAATA
1 GAAAATA
118521698 TTTCTAGAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
43 45 0.98
44 1 0.02
ACGTcount: A:0.53, C:0.14, G:0.05, T:0.28
Consensus pattern (44 bp):
GAAAATAATTCCCTTATTCTAATAAACTACTAAAACATAAAATA
Found at i:118528497 original size:31 final size:29
Alignment explanation
Indices: 118528452--118528512 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 29
118528442 ACTCAAATTT
* *
118528452 TAAAAAAATTAATAATATAATGATTTAAA
1 TAAAAAAATTAATAATATAAAGACTTAAA
*
118528481 TAAAAAAATTTAAATAATTTAAAGACTTAAA
1 TAAAAAAA-TT-AATAATATAAAGACTTAAA
118528512 T
1 T
118528513 CAATATTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 8 0.30
30 2 0.07
31 17 0.63
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.34
Consensus pattern (29 bp):
TAAAAAAATTAATAATATAAAGACTTAAA
Found at i:118531654 original size:183 final size:183
Alignment explanation
Indices: 118531344--118531761 Score: 773
Period size: 183 Copynumber: 2.3 Consensus size: 183
118531334 CTGAAATTCC
*
118531344 CAACAAAAAAAAATCAATAACCTAAAACTACCCAAAGAACATATAAAGCTCCTTCAAGGATTTAA
1 CAACAAAGAAAAATCAATAACCTAAAACTACCCAAAGAACATATAAAGCTCCTTCAAGGATTTAA
*
118531409 TCCAATTCTCAAATCATATACTCAAAGCTAACCCTAAGCTAAAACAAAAAGAACCTGTAGCTCAA
66 TCCAATTCTCAAATCATATACTCAAAGCTAACCCTAAGCTAAAACAAAAAGAACCCGTAGCTCAA
118531474 AATCAAAACCATGTCTCCTCAGTGAGACATAACATCAAACACATCAACTACAA
131 AATCAAAACCATGTCTCCTCAGTGAGACATAACATCAAACACATCAACTACAA
118531527 CAACAAAGAAAAATCAATAACCTAAAACTACCCAAAGAACATATAAAGCTCCTTCAAGGATTTAA
1 CAACAAAGAAAAATCAATAACCTAAAACTACCCAAAGAACATATAAAGCTCCTTCAAGGATTTAA
*
118531592 TCCAATTCTCAAATCATATATTCAAAGCTAACCCTAAGCTAAAACAAAAAGAACCCGTAGCTCAA
66 TCCAATTCTCAAATCATATACTCAAAGCTAACCCTAAGCTAAAACAAAAAGAACCCGTAGCTCAA
118531657 AATCAAAACCATGTCTCCTCAGTGAGACATAACATCAAACACATCAACTACAA
131 AATCAAAACCATGTCTCCTCAGTGAGACATAACATCAAACACATCAACTACAA
* * * *
118531710 CAACAAAGAACAATCAATAACCTGAAACTACCCAAAGATCATACAAAGCTCC
1 CAACAAAGAAAAATCAATAACCTAAAACTACCCAAAGAACATATAAAGCTCC
118531762 ATAAAATTTC
Statistics
Matches: 228, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
183 228 1.00
ACGTcount: A:0.48, C:0.26, G:0.07, T:0.19
Consensus pattern (183 bp):
CAACAAAGAAAAATCAATAACCTAAAACTACCCAAAGAACATATAAAGCTCCTTCAAGGATTTAA
TCCAATTCTCAAATCATATACTCAAAGCTAACCCTAAGCTAAAACAAAAAGAACCCGTAGCTCAA
AATCAAAACCATGTCTCCTCAGTGAGACATAACATCAAACACATCAACTACAA
Found at i:118536904 original size:14 final size:14
Alignment explanation
Indices: 118536885--118536920 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
118536875 TTAAACCGAC
118536885 AATTAAATTGATTA
1 AATTAAATTGATTA
* *
118536899 AATTAATTTTATTA
1 AATTAAATTGATTA
118536913 AATTAAAT
1 AATTAAAT
118536921 AAATTATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (14 bp):
AATTAAATTGATTA
Found at i:118536915 original size:23 final size:23
Alignment explanation
Indices: 118536886--118536931 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
118536876 TAAACCGACA
* *
118536886 ATTAAATTGATTAAATTAATTTT
1 ATTAAATTAAATAAATTAATTTT
*
118536909 ATTAAATTAAATAAATTATTTTT
1 ATTAAATTAAATAAATTAATTTT
118536932 GGACCCACAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (23 bp):
ATTAAATTAAATAAATTAATTTT
Found at i:118540865 original size:16 final size:16
Alignment explanation
Indices: 118540812--118540868 Score: 71
Period size: 17 Copynumber: 3.6 Consensus size: 16
118540802 AAATTTTTGA
*
118540812 GTTATTTAGA-TTTAG
1 GTTATTTTGAGTTTAG
* *
118540827 GTTATTTCGAGTTTAAA
1 GTTATTTTGAGTTT-AG
118540844 GTTATTTTGAGTTTAG
1 GTTATTTTGAGTTTAG
118540860 GTTATTTTG
1 GTTATTTTG
118540869 GGTCAAGTAG
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
15 9 0.25
16 13 0.36
17 14 0.39
ACGTcount: A:0.23, C:0.02, G:0.21, T:0.54
Consensus pattern (16 bp):
GTTATTTTGAGTTTAG
Found at i:118544711 original size:22 final size:22
Alignment explanation
Indices: 118544670--118544728 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
118544660 ATAATAAATT
* *
118544670 AAATATAT-TTAAAA-ACATAA
1 AAATAAATATTAAAACAAATAA
118544690 AAATAAATATTAAAACAAATAA
1 AAATAAATATTAAAACAAATAA
*
118544712 AAAT-AATACTAAAACAA
1 AAATAAATATTAAAACAA
118544729 TTCTTAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 18 0.53
22 9 0.26
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (22 bp):
AAATAAATATTAAAACAAATAA
Found at i:118544814 original size:17 final size:19
Alignment explanation
Indices: 118544773--118544814 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 19
118544763 AAAAATAGTT
*
118544773 ATATTAAAAATTTAAAATA
1 ATATTAAAAATATAAAATA
118544792 AT-TTAAAAA-ATAAAA-A
1 ATATTAAAAATATAAAATA
118544808 ATATTAA
1 ATATTAA
118544815 TATTAATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 3 0.14
17 9 0.43
18 7 0.33
19 2 0.10
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
ATATTAAAAATATAAAATA
Found at i:118545214 original size:18 final size:20
Alignment explanation
Indices: 118545193--118545229 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
118545183 ATTTAGTTAC
118545193 TTTTAAAAA-AACT-GAAAT
1 TTTTAAAAATAACTAGAAAT
118545211 TTTTAAAAATAACTAGAAA
1 TTTTAAAAATAACTAGAAA
118545230 AAGTTAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.53
19 4 0.24
20 4 0.24
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.32
Consensus pattern (20 bp):
TTTTAAAAATAACTAGAAAT
Found at i:118548246 original size:179 final size:179
Alignment explanation
Indices: 118547927--118548254 Score: 392
Period size: 179 Copynumber: 1.8 Consensus size: 179
118547917 TTTCTTACCA
* *
118547927 GAAATCACCTATTCTAAACATATGCATGGCAAGCAACTTCACTTTAGCTGAAAAGCCGGGATATT
1 GAAATCACCTATTCTAAACATATGCATGGCAAGCAACTTCACTTTAGCTAAAAAGCCGGGAGATT
* * * * ** **
118547992 CCAACAAAAATGAGATGAGATCAACTCCGGGGTTTCATGAAATCACCTATTCTAGACGTATGCAG
66 CCAACAAAAATGAGATCAGATCAACTCCGGGATTTCACGAAATCACCTATTCTAAACACAACCAG
* *
118548057 TGGGAAGCAACTATCATCTTGGTTGAAATGTTTGACTCCGGGATTTCAT
131 TAGAAAGCAACTATCATCTTGGTTGAAATGTTTGACTCCGGGATTTCAT
* * * *
118548106 GAAATCATCTATTCTAAACATATTCAATGGGAAGCAACTATCA-TCTTAGCTAAAAAGCTGGGAG
1 GAAATCACCTATTCTAAACATATGC-ATGGCAAGCAACT-TCACT-TTAGCTAAAAAGCCGGGAG
** * * * * *
118548170 ATTCTGACAAAAATGA-ATCA-TTCGATTCCTGGATTTCACGAAATTACCTATTCTAAACACAAC
63 ATTCCAACAAAAATGAGATCAGATCAACTCCGGGATTTCACGAAATCACCTATTCTAAACACAAC
*
118548233 CTGTAGAAAGCAACTATCATCT
128 CAGTAGAAAGCAACTATCATCT
118548255 AAAAAGCTGG
Statistics
Matches: 122, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
179 73 0.60
180 16 0.13
181 33 0.27
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (179 bp):
GAAATCACCTATTCTAAACATATGCATGGCAAGCAACTTCACTTTAGCTAAAAAGCCGGGAGATT
CCAACAAAAATGAGATCAGATCAACTCCGGGATTTCACGAAATCACCTATTCTAAACACAACCAG
TAGAAAGCAACTATCATCTTGGTTGAAATGTTTGACTCCGGGATTTCAT
Found at i:118549371 original size:182 final size:183
Alignment explanation
Indices: 118548920--118549447 Score: 651
Period size: 182 Copynumber: 2.9 Consensus size: 183
118548910 CATACAAAAT
* * * *
118548920 GATCCTCCAAATAGATAGAGAAAACTTTCAAAAAATAAAGCATACTAG-TATTGGACACGTACCC
1 GATCTTCCAAATAGATAGAAAAAACTTTCAAAAAATAAAGCATACTCGCT-TTGGACATGTACCC
* * * *** * * * * *
118548984 ATATCCAGTACTTACCCAAGTCGGAGTAATATATTAATT-AGT-TATAATTAGACCCTAAAAGGA
65 GTAGCCGGTACTTACATGAGTCCGAGTAACATGTCAATTAATTATATAATTAGACCCTAAAAGGA
* * * * * * *
118549047 CGGTCTCTTCATAAACATACAAATTAAAGGCACATATATATAGATAGATATAGATAC
130 CAGTCTCTTCATAAACATACAAATTAAAGGCAC--ACACACACATAGAGATA-ACAC
* * *
118549104 GATCCTT-CAAATAGATAGAAAAACCTTT-GAAAAATAAAGCATACTCACTTTGGACATGTACCC
1 GAT-CTTCCAAATAGATAGAAAAAACTTTCAAAAAATAAAGCATACTCGCTTTGGACATGTACCC
* * *
118549167 GTAGCCGGTCCTTATATGAGTCCAAGTAACATGTCAATTAATTATATAATTAGACCCTAAAAAGG
65 GTAGCCGGTACTTACATGAGTCCGAGTAACATGTCAATTAATTATATAATTAGACCCT-AAAAGG
118549232 -CAGTCTCTTCATAAACATACAAATTAAAGGCACACACACACATACG-GAT-ACAC
129 ACAGTCTCTTCATAAACATACAAATTAAAGGCACACACACACATA-GAGATAACAC
*
118549285 GATCTTCCAAATAGATAAAAAAAACTTTCAAAAAATAAAGCATACTCGCTTTGGACATGTACCCG
1 GATCTTCCAAATAGATAGAAAAAACTTTCAAAAAATAAAGCATACTCGCTTTGGACATGTACCCG
118549350 TAGCCGGTACTTACATGAGTCCGAGTAACATG-CTAATTAATTATATAATTAGACCCTAAAAGGA
66 TAGCCGGTACTTACATGAGTCCGAGTAACATGTC-AATTAATTATATAATTAGACCCTAAAAGGA
*
118549414 CAGTCTCTTCATAAACAGACAAATTAAAGGCACA
130 CAGTCTCTTCATAAACATACAAATTAAAGGCACA
118549448 TATATATACC
Statistics
Matches: 298, Mismatches: 36, Indels: 22
0.84 0.10 0.06
Matches are distributed among these distances:
180 3 0.01
181 32 0.11
182 119 0.40
183 64 0.21
184 26 0.09
185 48 0.16
186 6 0.02
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.26
Consensus pattern (183 bp):
GATCTTCCAAATAGATAGAAAAAACTTTCAAAAAATAAAGCATACTCGCTTTGGACATGTACCCG
TAGCCGGTACTTACATGAGTCCGAGTAACATGTCAATTAATTATATAATTAGACCCTAAAAGGAC
AGTCTCTTCATAAACATACAAATTAAAGGCACACACACACATAGAGATAACAC
Found at i:118557086 original size:21 final size:21
Alignment explanation
Indices: 118557060--118557112 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
118557050 CGCTGTTTCT
* *
118557060 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAATAACC
* *
118557081 AATCTCATCGCTACAATAACT
1 AATCTCACCGCTACAATAACC
118557102 AATCTCACCGC
1 AATCTCACCGC
118557113 CGCCGCCACT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.32, C:0.36, G:0.08, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAATAACC
Found at i:118563937 original size:31 final size:30
Alignment explanation
Indices: 118563901--118563962 Score: 72
Period size: 30 Copynumber: 2.0 Consensus size: 30
118563891 AAAATTATAC
118563901 TTTATCTCC-TCATAAATAATAAAAAAATAAT
1 TTTATC-CCTTCA-AAATAATAAAAAAATAAT
* * *
118563932 TTTATCCCTTGAAAATTATAAAAATATAAT
1 TTTATCCCTTCAAAATAATAAAAAAATAAT
118563962 T
1 T
118563963 ATTAAAACGA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
30 19 0.70
31 8 0.30
ACGTcount: A:0.48, C:0.11, G:0.02, T:0.39
Consensus pattern (30 bp):
TTTATCCCTTCAAAATAATAAAAAAATAAT
Found at i:118563969 original size:23 final size:23
Alignment explanation
Indices: 118563943--118564004 Score: 56
Period size: 22 Copynumber: 2.7 Consensus size: 23
118563933 TTATCCCTTG
*
118563943 AAAATTATAAAAATATAATTATT
1 AAAATCATAAAAATATAATTATT
* *
118563966 AAAA-CGATAAAATTAT-ATTTTT
1 AAAATC-ATAAAAATATAATTATT
**
118563988 ACTATCATAAAAATATA
1 AAAATCATAAAAATATA
118564005 TAATTTAATT
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
22 16 0.53
23 14 0.47
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.37
Consensus pattern (23 bp):
AAAATCATAAAAATATAATTATT
Found at i:118569064 original size:21 final size:21
Alignment explanation
Indices: 118569040--118569083 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
118569030 ATGTTTTAAT
**
118569040 AAAAATATTAAAAATTAGAAA
1 AAAAATAGAAAAAATTAGAAA
*
118569061 AAAAATAGAAAAAATTATAAA
1 AAAAATAGAAAAAATTAGAAA
118569082 AA
1 AA
118569084 TAGTAAAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.75, C:0.00, G:0.05, T:0.20
Consensus pattern (21 bp):
AAAAATAGAAAAAATTAGAAA
Found at i:118569092 original size:20 final size:21
Alignment explanation
Indices: 118569049--118569104 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
118569039 TAAAAATATT
* *
118569049 AAAAATTAGAAAAAAAATAGA
1 AAAAATTATAAAAATAATAGA
*
118569070 AAAAATTATAAAAATAGTA-A
1 AAAAATTATAAAAATAATAGA
*
118569090 AAAATTTATAAAAAT
1 AAAAATTATAAAAAT
118569105 TATCATACCA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 15 0.48
21 16 0.52
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.23
Consensus pattern (21 bp):
AAAAATTATAAAAATAATAGA
Found at i:118569400 original size:28 final size:30
Alignment explanation
Indices: 118569352--118569420 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 30
118569342 TTTATATTTA
* *
118569352 ATAA-TTTTAATAAAATTTTAAT-ATTTTT
1 ATAACTTTTATTAAAATTTTAATAACTTTT
**
118569380 ATATTTTTTATTAAAA-TTTAATAACTTTT
1 ATAACTTTTATTAAAATTTTAATAACTTTT
118569409 ATAACTTTTATT
1 ATAACTTTTATT
118569421 GATTTCTATT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
28 9 0.26
29 25 0.74
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (30 bp):
ATAACTTTTATTAAAATTTTAATAACTTTT
Found at i:118569691 original size:80 final size:78
Alignment explanation
Indices: 118569544--118569697 Score: 188
Period size: 80 Copynumber: 1.9 Consensus size: 78
118569534 TAACAGTCAA
*
118569544 AGGGCTTTTTTGATGTATTTTAAAAGTTCAAATACCCAATTGCATAAAAAAATGGCTTAATTGTT
1 AGGGCTTTTTTGATGTATTTTAAAAGTTCAAATACCCAATTGCATAAAAAAAAGGCTTAA-T-TT
*
118569609 TTTTTTTTTAATTTG
64 TTTCTTTTTAATTTG
* *
118569624 AGGGCCTTTTTT-ATGTATTTTAAAAGTTTAAATACCCAATTG-AGTAAAAAAACAGAGATTTAA
1 AGGG-CTTTTTTGATGTATTTTAAAAGTTCAAATACCCAATTGCA-TAAAAAAA-AG-G-CTTAA
118569687 -TTTTTCTTTTT
61 TTTTTTCTTTTT
118569698 GAAAAATTTT
Statistics
Matches: 65, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
79 1 0.02
80 51 0.78
81 8 0.12
82 1 0.02
83 4 0.06
ACGTcount: A:0.33, C:0.09, G:0.13, T:0.45
Consensus pattern (78 bp):
AGGGCTTTTTTGATGTATTTTAAAAGTTCAAATACCCAATTGCATAAAAAAAAGGCTTAATTTTT
TCTTTTTAATTTG
Found at i:118573472 original size:83 final size:84
Alignment explanation
Indices: 118573345--118573507 Score: 256
Period size: 83 Copynumber: 1.9 Consensus size: 84
118573335 TTTTAAAAAA
118573345 AATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTGATTTTCA-TTTATATGGCGGAT
1 AATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTGATTTTCATTTTATATGGCGGAT
118573409 CATCAATTTTTTCTTTCTT
66 CATCAATTTTTTCTTTCTT
* * *
118573428 AATTTTCATTTCGAATTCTTAGTTGAGCTTATCGTAGCATTTGATTTTCATTTCTTTATATGTCG
1 AATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTGATTTTCA--T-TTTATATGGCG
*
118573493 GATCTTCAATTTTTT
63 GATCATCAATTTTTT
118573508 TTTATTTCTC
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
83 48 0.67
87 24 0.33
ACGTcount: A:0.22, C:0.15, G:0.12, T:0.51
Consensus pattern (84 bp):
AATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTGATTTTCATTTTATATGGCGGAT
CATCAATTTTTTCTTTCTT
Found at i:118573498 original size:187 final size:196
Alignment explanation
Indices: 118573148--118573589 Score: 528
Period size: 187 Copynumber: 2.3 Consensus size: 196
118573138 TTTTTTTTTT
* *
118573148 AAATTTTCATTTCGAGA-TCTTAGTTAAGCTTATCGTAGGATTTGATTTTCATTTCTTTATCGGC
1 AAATTTTCATTTCGA-ACTCTTAGTTAAGCTTATCGTAGCATTTGATTTTCA-TT-TATATCGGC
*
118573212 CGAATCTTCAGTTATTTATTTATTTTTGAAATTTTCACTTCGAACACTTAGTTAAGCCTATCGTA
63 CGAATCATCA--TATTTATTTATTTTT-AAATTTTCACTTCGAACACTTAGTTAAGCCTATCGTA
118573277 GCATTTGACTTTCATTTCTTTACATGGCGGATCTTCAA-ATTTTTTTA-TT-TCT-TTGC-TTTT
125 GCATTTGACTTTCATTTCTTTACATGGCGGATCTTCAATATTTTTTTATTTCTCTCTTGCTTTTT
118573337 TTAAAAA
190 TTAAAAA
*
118573344 AAATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTGATTTTCATTTATAT-GG-CGG
1 AAATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTGATTTTCATTTATATCGGCCGA
* * ** * *
118573407 ATCATCA-ATTT-TTTCTTTCTT-AATTTTCATTTCGAATTCTTAGTTGAGCTTATCGTAGCATT
66 ATCATCATATTTATTTATTT-TTAAATTTTCACTTCGAACACTTAGTTAAGCCTATCGTAGCATT
* * * * * ***
118573469 TGATTTTCATTTCTTTATATGTCGGATCTTCAATTTTTTTTTATTTCTCTCTTTCTTTTTTTTTT
130 TGACTTTCATTTCTTTACATGGCGGATCTTCAATATTTTTTTATTTCTCTCTTGCTTTTTTTAAA
**
118573534 TG
195 AA
* * * *
118573536 AAATTTTCACTTCGAACACTTAGTTAAGCCTATCGTAGCATTTGACTTTCATTT
1 AAATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTGATTTTCATTT
118573590 CTTTACATGG
Statistics
Matches: 215, Mismatches: 24, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
187 66 0.31
188 14 0.07
189 8 0.04
190 3 0.01
191 3 0.01
192 64 0.30
193 2 0.01
194 4 0.02
195 3 0.01
196 48 0.22
ACGTcount: A:0.23, C:0.16, G:0.12, T:0.50
Consensus pattern (196 bp):
AAATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTGATTTTCATTTATATCGGCCGA
ATCATCATATTTATTTATTTTTAAATTTTCACTTCGAACACTTAGTTAAGCCTATCGTAGCATTT
GACTTTCATTTCTTTACATGGCGGATCTTCAATATTTTTTTATTTCTCTCTTGCTTTTTTTAAAA
A
Found at i:118573550 original size:109 final size:105
Alignment explanation
Indices: 118573428--118573716 Score: 363
Period size: 109 Copynumber: 2.8 Consensus size: 105
118573418 TTTCTTTCTT
* * *
118573428 AATTTTCATTTCGAATTCTTAGTTGAGCTTATCGTAGCATTTGATTTTCATTTCTTTATATGTCG
1 AATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTGATTTTCATTTCTTTATATGGCG
* *****
118573493 GATCTTCAATTTTTTTTTATTTCTCTCTTTCTTTTTTTTTTTGA
66 GATCTTCAATTTTTTTTTA-TT-TCT-TTGC-TTTTTTAAAAAA
* * * * *
118573537 AATTTTCACTTCGAACACTTAGTTAAGCCTATCGTAGCATTTGACTTTCATTTCTTTACATGGCG
1 AATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTGATTTTCATTTCTTTATATGGCG
*
118573602 GATCTTCAA-ATTTTTTTATTTCTTTGCTTTTTTAAAAAA
66 GATCTTCAATTTTTTTTTATTTCTTTGCTTTTTTAAAAAA
118573641 AATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTGATTTTCA----TTTATATGGCG
1 AATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTGATTTTCATTTCTTTATATGGCG
*
118573702 GATCATCAATTTTTT
66 GATCTTCAATTTTTT
118573717 CTTTCTTAAT
Statistics
Matches: 157, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
100 18 0.11
101 4 0.03
104 53 0.34
105 3 0.02
106 3 0.02
107 2 0.01
108 8 0.05
109 66 0.42
ACGTcount: A:0.22, C:0.15, G:0.11, T:0.51
Consensus pattern (105 bp):
AATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTGATTTTCATTTCTTTATATGGCG
GATCTTCAATTTTTTTTTATTTCTTTGCTTTTTTAAAAAA
Found at i:118573760 original size:187 final size:189
Alignment explanation
Indices: 118573537--118574079 Score: 557
Period size: 187 Copynumber: 2.8 Consensus size: 189
118573527 TTTTTTTTGA
* * *
118573537 AATTTTCACTTCGAACACTTAGTTAAGCCTATCGTAGCATTTGACTTTCATTTCTTTACATGGCG
1 AATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTGA-TTTCATTTCTTTACATGGCG
*
118573602 GATCTTCAAATTTTTTTATTTCTTTGCTTTTTTAAAAAAAATTTTCATTTCGAACTCTTAGTTAA
65 GATCTTCAAATTTTTTTATTTCTTTGCTTTTTT---TAAAATTTTCATTTCGAACTCTTAGTTAA
118573667 GCTTATCGTAGCATTTGATTTTCATTT-ATATGGCGGATCATC-AA-TT-TTT-TC-TTTCTT
127 GCTTATCGTAGCATTTGATTTTCATTTAATATGGCGGATCATCAAATTTGTTTCTCTTTTCTT
* * * *
118573724 AATTTTCATTTCGAATTCTTAGTTGAGCTTATCGTAGCATTTGATTTTCATTTCTTTATATGTCG
1 AATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTGA-TTTCATTTCTTTACATGGCG
* * * * * *
118573789 GATCTTCAATTTTTTTTTATTTCTCTCTTTCTTTTTTTTTTGAAATTTTCACTTCGAACACTTAC
65 GATCTTCAA-ATTTTTTTA-TT-TCT-TTGC---TTTTTTTAAAATTTTCATTTCGAACTCTTAG
* * *
118573854 TTAAGCTTATCGAAGCATTTAATTTTCATTTCTTAATATGGCGGATCTTCAAATTTTTGTTTCTC
123 TTAAGCTTATCGTAGCATTTGATTTTCA--T-TTAATATGGCGGATCATCAAA--TTTGTTTCTC
*
118573919 TGTTTGTTTTTT
183 ----T-TTTCTT
* * * *
118573931 CATTTTCATTTTGAACTCTTAGTTAAGCTTATCGTAGCAGTTGATTTCATTTCTTTACATGGCGC
1 AATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTGATTTCATTTCTTTACATGGCGG
* * *** *
118573996 ATCTTCAAA--TTTTTGTTTCTCTG-TTTTTTTTTCATTTTCATTTTGAACTCTTAGTTAAGCTT
66 ATCTTCAAATTTTTTTATTTCTTTGCTTTTTTTAAAATTTTCATTTCGAACTCTTAGTTAAGCTT
*
118574058 ATCGTAGCAGTTGA-TTTCATTT
131 ATCGTAGCATTTGATTTTCATTT
118574080 CTTTACATGG
Statistics
Matches: 292, Mismatches: 41, Indels: 41
0.78 0.11 0.11
Matches are distributed among these distances:
187 66 0.23
188 8 0.03
189 2 0.01
190 3 0.01
191 49 0.17
192 2 0.01
193 2 0.01
194 8 0.03
195 19 0.07
196 45 0.15
199 2 0.01
200 4 0.01
201 5 0.02
202 2 0.01
203 5 0.02
206 26 0.09
207 44 0.15
ACGTcount: A:0.22, C:0.16, G:0.11, T:0.51
Consensus pattern (189 bp):
AATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTGATTTCATTTCTTTACATGGCGG
ATCTTCAAATTTTTTTATTTCTTTGCTTTTTTTAAAATTTTCATTTCGAACTCTTAGTTAAGCTT
ATCGTAGCATTTGATTTTCATTTAATATGGCGGATCATCAAATTTGTTTCTCTTTTCTT
Found at i:118573768 original size:83 final size:84
Alignment explanation
Indices: 118573641--118573803 Score: 256
Period size: 83 Copynumber: 1.9 Consensus size: 84
118573631 TTTTAAAAAA
118573641 AATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTGATTTTCA-TTTATATGGCGGAT
1 AATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTGATTTTCATTTTATATGGCGGAT
118573705 CATCAATTTTTTCTTTCTT
66 CATCAATTTTTTCTTTCTT
* * *
118573724 AATTTTCATTTCGAATTCTTAGTTGAGCTTATCGTAGCATTTGATTTTCATTTCTTTATATGTCG
1 AATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTGATTTTCA--T-TTTATATGGCG
*
118573789 GATCTTCAATTTTTT
63 GATCATCAATTTTTT
118573804 TTTATTTCTC
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
83 48 0.67
87 24 0.33
ACGTcount: A:0.22, C:0.15, G:0.12, T:0.51
Consensus pattern (84 bp):
AATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTGATTTTCATTTTATATGGCGGAT
CATCAATTTTTTCTTTCTT
Found at i:118573768 original size:296 final size:295
Alignment explanation
Indices: 118573234--118573982 Score: 1300
Period size: 296 Copynumber: 2.6 Consensus size: 295
118573224 TATTTATTTA
118573234 TTTTTGAAATTTTCACTTCGAACACTTAGTTAAGCCTATCGTAGCATTTGACTTTCATTTCTTTA
1 TTTTTGAAATTTTCACTTCGAACACTTAGTTAAGCCTATCGTAGCATTTGACTTTCATTTCTTTA
118573299 CATGGCGGATCTTCAAATTTTTTTATTTCTTTGCTTTTTTAAAAAAAATTTTCATTTCGAACTCT
66 CATGGCGGATCTTCAAATTTTTTTATTTCTTTGCTTTTTTAAAAAAAATTTTCATTTCGAACTCT
118573364 TAGTTAAGCTTATCGTAGCATTTGATTTTCATTTATATGGCGGATCATCAATTTTTTCTTTCTTA
131 TAGTTAAGCTTATCGTAGCATTTGATTTTCATTTATATGGCGGATCATCAATTTTTTCTTTCTTA
118573429 ATTTTCATTTCGAATTCTTAGTTGAGCTTATCGTAGCATTTGATTTTCATTTCTTTATATGTCGG
196 ATTTTCATTTCGAATTCTTAGTTGAGCTTATCGTAGCATTTGATTTTCATTTCTTTATATGTCGG
118573494 ATCTTCAATTTTTTTTTATTTCTCTCTTTCTTTTTT
261 ATCTTCAATTTTTTTTTATTTCTCTCTTTC-TTTTT
118573530 TTTTTGAAATTTTCACTTCGAACACTTAGTTAAGCCTATCGTAGCATTTGACTTTCATTTCTTTA
1 TTTTTGAAATTTTCACTTCGAACACTTAGTTAAGCCTATCGTAGCATTTGACTTTCATTTCTTTA
118573595 CATGGCGGATCTTCAAATTTTTTTATTTCTTTGCTTTTTTAAAAAAAATTTTCATTTCGAACTCT
66 CATGGCGGATCTTCAAATTTTTTTATTTCTTTGCTTTTTTAAAAAAAATTTTCATTTCGAACTCT
118573660 TAGTTAAGCTTATCGTAGCATTTGATTTTCATTTATATGGCGGATCATCAATTTTTTCTTTCTTA
131 TAGTTAAGCTTATCGTAGCATTTGATTTTCATTTATATGGCGGATCATCAATTTTTTCTTTCTTA
118573725 ATTTTCATTTCGAATTCTTAGTTGAGCTTATCGTAGCATTTGATTTTCATTTCTTTATATGTCGG
196 ATTTTCATTTCGAATTCTTAGTTGAGCTTATCGTAGCATTTGATTTTCATTTCTTTATATGTCGG
118573790 ATCTTCAATTTTTTTTTATTTCTCTCTTTCTTTTT
261 ATCTTCAATTTTTTTTTATTTCTCTCTTTCTTTTT
* * * * * *
118573825 TTTTTGAAATTTTCACTTCGAACACTTACTTAAGCTTATCGAAGCATTTAATTTTCATTTCTTAA
1 TTTTTGAAATTTTCACTTCGAACACTTAGTTAAGCCTATCGTAGCATTTGACTTTCATTTCTTTA
* * * *
118573890 TATGGCGGATCTTCAAATTTTTGTT-TCTCTGTTTG-TTTTTT------CATTTTCATTTTGAAC
66 CATGGCGGATCTTCAAATTTTT-TTAT-T-TCTTTGCTTTTTTAAAAAAAATTTTCATTTCGAAC
*
118573947 TCTTAGTTAAGCTTATCGTAGCAGTTGA-TTTCATTT
128 TCTTAGTTAAGCTTATCGTAGCATTTGATTTTCATTT
118573983 CTTTACATGG
Statistics
Matches: 439, Mismatches: 11, Indels: 13
0.95 0.02 0.03
Matches are distributed among these distances:
289 8 0.02
290 41 0.09
295 86 0.20
296 299 0.68
297 5 0.01
ACGTcount: A:0.22, C:0.15, G:0.11, T:0.51
Consensus pattern (295 bp):
TTTTTGAAATTTTCACTTCGAACACTTAGTTAAGCCTATCGTAGCATTTGACTTTCATTTCTTTA
CATGGCGGATCTTCAAATTTTTTTATTTCTTTGCTTTTTTAAAAAAAATTTTCATTTCGAACTCT
TAGTTAAGCTTATCGTAGCATTTGATTTTCATTTATATGGCGGATCATCAATTTTTTCTTTCTTA
ATTTTCATTTCGAATTCTTAGTTGAGCTTATCGTAGCATTTGATTTTCATTTCTTTATATGTCGG
ATCTTCAATTTTTTTTTATTTCTCTCTTTCTTTTT
Found at i:118573845 original size:108 final size:97
Alignment explanation
Indices: 118573711--118574184 Score: 477
Period size: 97 Copynumber: 4.7 Consensus size: 97
118573701 GGATCATCAA
* * *
118573711 TTTTTTCTTTCTTAATTTTCATTTCGAATTCTTAGTTGAGCTTATCGTAGCATTTGATTTTCATT
1 TTTTTT-TTT-TTAATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCAGTTGA-TTTCATT
* * *
118573776 TCTTTATATGTCGGATCTTCAATTTTTTTTTATTTCTCTC
63 TCTTTATATGGCGGATCTTCAA---ATTTTT-GTT-TCTC
* * * * * *
118573816 TTTCTTTTTTTTTTGAAATTTTCACTTCGAACACTTACTTAAGCTTATCGAAGCATTTAATTTTC
1 --T-TTTTTTTTTT--AATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCAGTTGA-TTTC
*
118573881 ATTTCTTAATATGGCGGATCTTCAAATTTTTGTTTCTC
60 ATTTCTTTATATGGCGGATCTTCAAATTTTTGTTTCTC
* * *
118573919 TGTTTGTTTTTTCATTTTCATTTTGAACTCTTAGTTAAGCTTATCGTAGCAGTTGATTTCATTTC
1 T-TTTTTTTTTTAATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCAGTTGATTTCATTTC
* *
118573984 TTTACATGGCGCATCTTCAAATTTTTGTTTCTC
65 TTTATATGGCGGATCTTCAAATTTTTGTTTCTC
* * *
118574017 TGTTTTTTTTTCATTTTCATTTTGAACTCTTAGTTAAGCTTATCGTAGCAGTTGATTTCATTTCT
1 TTTTTTTTTTTAATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCAGTTGATTTCATTTCT
* **
118574082 TTACATGGCACATCTTCAAATTTTTGTTTCTC
66 TTATATGGCGGATCTTCAAATTTTTGTTTCTC
** * *
118574114 TGTTATTTTTTTCCA-TTTCGAAGTTCGAACAATC-T-GTTAAGCTTATCGTAGCATTTGATTTT
1 T-TT-TTTTTTTTAATTTTC--ATTTCGAAC--TCTTAGTTAAGCTTATCGTAGCAGTTGA-TTT
118574176 CATTTCTTT
59 CATTTCTTT
118574185 GTTTTTTTAA
Statistics
Matches: 325, Mismatches: 32, Indels: 26
0.85 0.08 0.07
Matches are distributed among these distances:
97 94 0.29
98 45 0.14
99 45 0.14
100 29 0.09
101 23 0.07
102 2 0.01
103 4 0.01
104 2 0.01
105 5 0.02
106 2 0.01
107 4 0.01
108 70 0.22
ACGTcount: A:0.20, C:0.16, G:0.11, T:0.53
Consensus pattern (97 bp):
TTTTTTTTTTTAATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCAGTTGATTTCATTTCT
TTATATGGCGGATCTTCAAATTTTTGTTTCTC
Done.