Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 36 of 362
Found at i:10589636 original size:16 final size:16
Alignment explanation
Indices: 10589615--10589649 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
10589605 TGGAAAAATT
10589615 GATCTTCTGGGGCTCC
1 GATCTTCTGGGGCTCC
10589631 GATCTTCTGGGGCTCC
1 GATCTTCTGGGGCTCC
10589647 GAT
1 GAT
10589650 TTTGTACAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.09, C:0.29, G:0.31, T:0.31
Consensus pattern (16 bp):
GATCTTCTGGGGCTCC
Found at i:10589886 original size:60 final size:60
Alignment explanation
Indices: 10589788--10589912 Score: 223
Period size: 60 Copynumber: 2.1 Consensus size: 60
10589778 GGGCCTAATT
* *
10589788 TTATATCCATGTTCTTTTGTAGAAATTAGTTATGAACAAGGTAATATATATAGATATAGC
1 TTATTTCCATGTTCTTTTGTACAAATTAGTTATGAACAAGGTAATATATATAGATATAGC
*
10589848 TTATTTCCATGTTCTTTTGTACAAATTAGTTATGAACAAGGTAATATATATAGATATAGT
1 TTATTTCCATGTTCTTTTGTACAAATTAGTTATGAACAAGGTAATATATATAGATATAGC
10589908 TTATT
1 TTATT
10589913 AATGAACAAG
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 62 1.00
ACGTcount: A:0.35, C:0.08, G:0.14, T:0.43
Consensus pattern (60 bp):
TTATTTCCATGTTCTTTTGTACAAATTAGTTATGAACAAGGTAATATATATAGATATAGC
Found at i:10590718 original size:106 final size:105
Alignment explanation
Indices: 10590239--10590777 Score: 851
Period size: 104 Copynumber: 5.2 Consensus size: 105
10590229 ATTTTAAAAT
* * * * *
10590239 TTTTATTTTATTTTGAAATTACCGAATTAAATTAAAATGTATTTAAAGTTTTA-TTTGAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTCTTTAAAGTTTTATTTTAAATATTT
* * *
10590303 TAGTTGATTTTAATTTAATCACAAAAAACATTTTGTCTAC
66 TACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
10590343 TTTTATTTT-TTTTTAAATTACCTAATTAAATTAAATTGTCTTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTCTTTAAAGTTTTATTTTAAATATTT
*
10590407 TACTTGATTTTAATTTACTCACTAAAAATA--TTGTCTAC
66 TACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
*
10590445 TTTTATTTTAATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATT
1 TTTTATTTT-ATTTTTAAATTACCTAATTAAATTAAATTGTCTTTAAAGTTTTATTTTAAATATT
*
10590510 TTA-TTGGATTTTAATTTAATCACAAAAAATATTTTGTCTAC
65 TTACTT-GATTTTAATTTAATCACTAAAAATATTTTGTCTAC
* *
10590551 TTTTATTTTATTTTTAAATTACCTAACTAAATTAAAATGTCTTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTCTTTAAAGTTTTATTTTAAATATTT
10590616 TACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
66 TACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
* *
10590656 TTTTATTTTATTTTTTAAATTACCTAATTAAATTAATTTTTCTTTAAAGTTTTATTTTAAATATT
1 TTTTATTTTA-TTTTTAAATTACCTAATTAAATTAAATTGTCTTTAAAGTTTTATTTTAAATATT
*
10590721 TTACTTGATTTTAATTTAATCACTAAAAATA--TTATCTAC
65 TTACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
10590760 -TTTATTTTATTTTTAAAT
1 TTTTATTTTATTTTTAAAT
10590778 ATTTTATTTT
Statistics
Matches: 406, Mismatches: 21, Indels: 18
0.91 0.05 0.04
Matches are distributed among these distances:
102 26 0.06
103 50 0.12
104 131 0.32
105 99 0.24
106 100 0.25
ACGTcount: A:0.35, C:0.07, G:0.04, T:0.53
Consensus pattern (105 bp):
TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTCTTTAAAGTTTTATTTTAAATATTT
TACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
Found at i:10590966 original size:18 final size:18
Alignment explanation
Indices: 10590921--10591126 Score: 110
Period size: 18 Copynumber: 11.0 Consensus size: 18
10590911 ATATCATATA
* *
10590921 TTACATAAATTACATAAG
1 TTACATAACTTACATAAT
* * *
10590939 ATAAACAACTTACATAAT
1 TTACATAACTTACATAAT
*
10590957 TTACATAACTTACGTAA-
1 TTACATAACTTACATAAT
* * *
10590974 -CACATAAGTATATATTATAT
1 TTACATAACT-TACA-TA-AT
* *
10590994 TGTACACAATTTACATAAT
1 T-TACATAACTTACATAAT
***
10591013 TCGGATAACTTACATAAT
1 TTACATAACTTACATAAT
10591031 TTACATAACTTACATATAT
1 TTACATAACTTACATA-AT
* * *
10591050 AATACATAAATATATATCATAT
1 -TTACATAACT-TACAT-A-AT
* *
10591072 CGTACATAATTTACATAAT
1 -TTACATAACTTACATAAT
** *
10591091 TTGGATAACTTACACAAT
1 TTACATAACTTACATAAT
10591109 TTACATAACTTACATAAT
1 TTACATAACTTACATAAT
10591127 ACATAAATAT
Statistics
Matches: 138, Mismatches: 40, Indels: 20
0.70 0.20 0.10
Matches are distributed among these distances:
16 7 0.05
17 2 0.01
18 81 0.59
19 8 0.06
20 11 0.08
21 11 0.08
22 18 0.13
ACGTcount: A:0.45, C:0.15, G:0.04, T:0.36
Consensus pattern (18 bp):
TTACATAACTTACATAAT
Found at i:10590974 original size:9 final size:9
Alignment explanation
Indices: 10590921--10591163 Score: 70
Period size: 9 Copynumber: 26.3 Consensus size: 9
10590911 ATATCATATA
*
10590921 TTACATAAA
1 TTACATAAC
*
10590930 TTACATAAG
1 TTACATAAC
* * *
10590939 ATAAACAAC
1 TTACATAAC
*
10590948 TTACATAAT
1 TTACATAAC
10590957 TTACATAAC
1 TTACATAAC
*
10590966 TTACGTAAC
1 TTACATAAC
*
10590975 --ACATAAG
1 TTACATAAC
* *
10590982 TATATATTATAT
1 T-TACA-TA-AC
* *
10590994 TGTACACAAT
1 T-TACATAAC
10591004 TTACATAA-
1 TTACATAAC
10591012 TT-CGGATAAC
1 TTAC--ATAAC
*
10591022 TTACATAAT
1 TTACATAAC
10591031 TTACATAAC
1 TTACATAAC
10591040 TTACATATA-
1 TTACATA-AC
*
10591049 TAATACATAAATA
1 T--TACAT-AA-C
*
10591062 TATATCATATC
1 T-TA-CATAAC
* *
10591073 GTACATAAT
1 TTACATAAC
*
10591082 TTACATAAT
1 TTACATAAC
**
10591091 TTGGATAAC
1 TTACATAAC
* *
10591100 TTACACAAT
1 TTACATAAC
10591109 TTACATAAC
1 TTACATAAC
10591118 TTACATAA-
1 TTACATAAC
*
10591126 -TACATAAA
1 TTACATAAC
* *
10591134 TATATATCAC
1 T-TACATAAC
*
10591144 AT-CATAAC
1 TTACATAAC
10591152 TTACATAAC
1 TTACATAAC
10591161 TTA
1 TTA
10591164 ATTATACTTA
Statistics
Matches: 171, Mismatches: 43, Indels: 40
0.67 0.17 0.16
Matches are distributed among these distances:
7 13 0.08
8 7 0.04
9 112 0.65
10 15 0.09
11 10 0.06
12 10 0.06
13 4 0.02
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.35
Consensus pattern (9 bp):
TTACATAAC
Found at i:10591008 original size:74 final size:73
Alignment explanation
Indices: 10590883--10591142 Score: 324
Period size: 74 Copynumber: 3.5 Consensus size: 73
10590873 CATCAACAAC
* * * ** *
10590883 TTACATAACTTACGTAATACATAAATATATATCATATAT-TACATAAATTACATAAGATAAACAA
1 TTACATAACTTACATAATACATAAATATATATCATAT-TGTACATAATTTACATAA-TTGGATAA
10590947 CTTACATAAT
64 CTTACATAAT
* * * * *
10590957 TTACATAACTTACGTAACACATAAGTATATATTATATTGTACACAATTTACATAATTCGGATAAC
1 TTACATAACTTACATAATACATAAATATATATCATATTGTACATAATTTACATAATT-GGATAAC
10591022 TTACATAAT
65 TTACATAAT
*
10591031 TTACATAACTTACATATATAATACATAAATATATATCATATCGTACATAATTTACATAATTTGGA
1 TTACATAACTTAC----ATAATACATAAATATATATCATATTGTACATAATTTACATAA-TTGGA
*
10591096 TAACTTACACAAT
61 TAACTTACATAAT
10591109 TTACATAACTTACATAATACATAAATATATATCA
1 TTACATAACTTACATAATACATAAATATATATCA
10591143 CATCATAACT
Statistics
Matches: 163, Mismatches: 16, Indels: 14
0.84 0.08 0.07
Matches are distributed among these distances:
73 2 0.01
74 95 0.58
78 64 0.39
79 2 0.01
ACGTcount: A:0.46, C:0.14, G:0.04, T:0.36
Consensus pattern (73 bp):
TTACATAACTTACATAATACATAAATATATATCATATTGTACATAATTTACATAATTGGATAACT
TACATAAT
Found at i:10596653 original size:21 final size:21
Alignment explanation
Indices: 10596624--10596674 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
10596614 ACAACTTAGA
*
10596624 GCAGAGGCAGCAGAGAGGGAG
1 GCAGAGGCAGCAGAGAGAGAG
* *
10596645 GCAGCGGCAGCAGTGAGAGAG
1 GCAGAGGCAGCAGAGAGAGAG
10596666 GCAGAGGCA
1 GCAGAGGCA
10596675 CGAGCGATGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.31, C:0.18, G:0.49, T:0.02
Consensus pattern (21 bp):
GCAGAGGCAGCAGAGAGAGAG
Found at i:10596975 original size:31 final size:31
Alignment explanation
Indices: 10596929--10596995 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
10596919 TGGTTGTATT
* *
10596929 TTTTATGCTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATACTAAATTTGCTGTATTTGGCTGCA
* * * *
10596960 TTTTATACTATATTTGTTGTATTTGGTTGGA
1 TTTTATACTAAATTTGCTGTATTTGGCTGCA
10596991 TTTTA
1 TTTTA
10596996 ACGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.07, G:0.18, T:0.57
Consensus pattern (31 bp):
TTTTATACTAAATTTGCTGTATTTGGCTGCA
Found at i:10597136 original size:42 final size:44
Alignment explanation
Indices: 10597070--10597181 Score: 149
Period size: 42 Copynumber: 2.6 Consensus size: 44
10597060 TGGGAAAAGC
10597070 GCCGCTAAAAGCCATGACTTTTAGCGGCACTTTTTAAACAAA-T
1 GCCGCTAAAAGCCATGACTTTTAGCGGCACTTTTTAAACAAACT
* * ** *
10597113 GCCGCT-AAAGCTATCACTTTTAGCGGCGTTTTTTTAACAAACT
1 GCCGCTAAAAGCCATGACTTTTAGCGGCACTTTTTAAACAAACT
*
10597156 -CAGCTAAAAGCCATGACTTTTAGCGG
1 GCCGCTAAAAGCCATGACTTTTAGCGG
10597182 GCGTTTTTTT
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
42 34 0.58
43 25 0.42
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (44 bp):
GCCGCTAAAAGCCATGACTTTTAGCGGCACTTTTTAAACAAACT
Found at i:10597816 original size:7 final size:7
Alignment explanation
Indices: 10597801--10597919 Score: 53
Period size: 7 Copynumber: 15.4 Consensus size: 7
10597791 AAAATTATAC
*
10597801 ATAATTA
1 ATAAATA
10597808 ATAAATA
1 ATAAATA
10597815 ATAAATA
1 ATAAATA
10597822 ATAAAATA
1 AT-AAATA
* *
10597830 TTATATA
1 ATAAATA
10597837 ATAAAATA
1 AT-AAATA
10597845 A-AAATA
1 ATAAATA
10597851 ACGTAAGGGATA
1 A--TAA---ATA
10597863 ATATATATA
1 ATA-A-ATA
*
10597872 ATATATA
1 ATAAATA
*
10597879 ATAAATTT
1 ATAAA-TA
10597887 ATAAATAAA
1 ATAAAT--A
*
10597896 ATATATA
1 ATAAATA
10597903 ATAGAAT-
1 ATA-AATA
10597910 ATAAATA
1 ATAAATA
10597917 ATA
1 ATA
10597920 TGAAAAATAA
Statistics
Matches: 86, Mismatches: 12, Indels: 28
0.68 0.10 0.22
Matches are distributed among these distances:
6 9 0.10
7 38 0.44
8 19 0.22
9 13 0.15
10 2 0.02
11 1 0.01
12 4 0.05
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (7 bp):
ATAAATA
Found at i:10597837 original size:15 final size:15
Alignment explanation
Indices: 10597801--10597851 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
10597791 AAAATTATAC
*
10597801 ATAATTAAT-AAATA
1 ATAAATAATAAAATA
10597815 ATAAATAATAAAATA
1 ATAAATAATAAAATA
* *
10597830 TTATATAATAAAATA
1 ATAAATAATAAAATA
10597845 A-AAATAA
1 ATAAATAA
10597852 CGTAAGGGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
14 13 0.42
15 18 0.58
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
ATAAATAATAAAATA
Found at i:10597903 original size:24 final size:23
Alignment explanation
Indices: 10597871--10597917 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
10597861 TAATATATAT
10597871 AATATATAATA-AATTTATAAATAA
1 AATATATAATAGAA--TATAAATAA
10597895 AATATATAATAGAATATAAATAA
1 AATATATAATAGAATATAAATAA
10597918 TATGAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 9 0.41
24 11 0.50
25 2 0.09
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (23 bp):
AATATATAATAGAATATAAATAA
Found at i:10597905 original size:12 final size:12
Alignment explanation
Indices: 10597871--10597917 Score: 53
Period size: 12 Copynumber: 4.0 Consensus size: 12
10597861 TAATATATAT
10597871 AATATATAAT-A
1 AATATATAATAA
*
10597882 AATTTATAAATAA
1 AATATAT-AATAA
*
10597895 AATATATAATAG
1 AATATATAATAA
10597907 AATATA-AATAA
1 AATATATAATAA
10597918 TATGAAAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
11 10 0.33
12 13 0.43
13 7 0.23
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (12 bp):
AATATATAATAA
Found at i:10598081 original size:32 final size:32
Alignment explanation
Indices: 10598020--10598079 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
10598010 ATATATATAA
*
10598020 AGGATTAAAATTAAATTTAAATAAAAAAATCT
1 AGGATTAAAATTAAATTAAAATAAAAAAATCT
**
10598052 AGGATTAATTTTAAA-TAAAATAAAAAAA
1 AGGATTAAAATTAAATTAAAATAAAAAAA
10598080 ATTGGACCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 12 0.48
32 13 0.52
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.30
Consensus pattern (32 bp):
AGGATTAAAATTAAATTAAAATAAAAAAATCT
Found at i:10599529 original size:45 final size:45
Alignment explanation
Indices: 10599475--10600051 Score: 247
Period size: 45 Copynumber: 13.0 Consensus size: 45
10599465 TGTTAATATC
* *
10599475 CTTC-ATCTGCTCCCCGTCAAATACAGAGATACCAAATCTGCTAT
1 CTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGCTAT
** * * * **
10599519 CTTCGATCTGCT--TTGATGTAA-ACATACGAATGTCAGTTCTGCTAT
1 CTTCGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAAATCTGCTAT
* * *
10599564 CTTCGATCTGCTCCCCGTGTAATACAGAGACGCCAAATCT-TTCAT
1 CTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGCT-AT
* * * * ** *
10599609 TTTCGATCTGCT--TCGATGTAA-ACACACGAATATCAGATCTGCTAT
1 CTTCGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAAATCTGCTAT
* * *** *
10599654 CTTCGATTTGCTCCCCGTCTAATATAGAGACATCAAATCT-ATCAT
1 CTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGCT-AT
* * * * * *
10599699 TTTCGATCTGCT--TCGATGTAA-ACAAACGAATGTCAGATCTGCTAT
1 CTTCGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAAATCTGCTAT
* * *
10599744 CTTTGATCTGCTCTCCGTCTAATACAGAGACGCCAAATCTG-TCAT
1 CTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGCT-AT
* * * * *
10599789 CTTCGATCTGCT--TCGATGTAA-ACACACGAATGCCAGATCTACTAT
1 CTTCGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAAATCTGCTAT
* * * * *
10599834 GTTCGATCTACTCCTCCGTCTAATACATAGACGCCAAATCTGCCAT
1 CTTCGATCTGCTCC-CCGTCTAATACAGAGATGCCAAATCTGCTAT
* * *
10599880 CTTCGATCTGCT-----TC--ACAC-GA-ATGTCAAATCTACTAT
1 CTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGCTAT
* * * *
10599916 CTTCGATCTGTTCCCCATCTAATACGGAGACGCCAAATCTG-TCAT
1 CTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGCT-AT
* * * * *
10599961 TTTCAATCTGCTCCCCATCTAATACGGAGACGCCAAATCTG-TCAT
1 CTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGCT-AT
* * * * *
10600006 CTTCGATTTGTTCCCTGTC-AATACAGAGATGTCAAATTTGCTAT
1 CTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGCTAT
10600050 CT
1 CT
10600052 ACATTGTCCC
Statistics
Matches: 396, Mismatches: 94, Indels: 86
0.69 0.16 0.15
Matches are distributed among these distances:
36 23 0.06
37 1 0.00
38 3 0.01
40 2 0.01
41 2 0.01
43 25 0.06
44 51 0.13
45 221 0.56
46 41 0.10
47 21 0.05
48 6 0.02
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.32
Consensus pattern (45 bp):
CTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGCTAT
Found at i:10599632 original size:90 final size:90
Alignment explanation
Indices: 10599475--10599893 Score: 581
Period size: 90 Copynumber: 4.7 Consensus size: 90
10599465 TGTTAATATC
* ** *
10599475 CTTC-ATCTGCTCCCCGTCAAATACAGAGATACCAAATCTG-CTATCTTCGATCTGCTTTGATGT
1 CTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTTCGATGT
* *
10599538 AAACATACGAATGTCAGTTCTGCTAT
65 AAACACACGAATGTCAGATCTGCTAT
* * *
10599564 CTTCGATCTGCTCCCCGTGTAATACAGAGACGCCAAATCTTTCATTTTCGATCTGCTTCGATGTA
1 CTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTA
*
10599629 AACACACGAATATCAGATCTGCTAT
66 AACACACGAATGTCAGATCTGCTAT
* * ** * *
10599654 CTTCGATTTGCTCCCCGTCTAATATAGAGACATCAAATCTATCATTTTCGATCTGCTTCGATGTA
1 CTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTA
*
10599719 AACAAACGAATGTCAGATCTGCTAT
66 AACACACGAATGTCAGATCTGCTAT
* *
10599744 CTTTGATCTGCTCTCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTA
1 CTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTA
* *
10599809 AACACACGAATGCCAGATCTACTAT
66 AACACACGAATGTCAGATCTGCTAT
* * * *
10599834 GTTCGATCTACTCCTCCGTCTAATACATAGACGCCAAATCTGCCATCTTCGATCTGCTTC
1 CTTCGATCTGCTCC-CCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTC
10599894 ACACGAATGT
Statistics
Matches: 292, Mismatches: 35, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
89 4 0.01
90 244 0.84
91 44 0.15
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.32
Consensus pattern (90 bp):
CTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATGTA
AACACACGAATGTCAGATCTGCTAT
Found at i:10599796 original size:180 final size:178
Alignment explanation
Indices: 10599475--10599972 Score: 627
Period size: 180 Copynumber: 2.8 Consensus size: 178
10599465 TGTTAATATC
* * * *
10599475 CTTC-ATCTGCTCCCCGTCAAATACAGAGATACCAAATCTGCTATCTTCGATCTGCTTTGATGTA
1 CTTCGATCTGCTCCCCGTCTAATACAGAGACACCAAATCT-CCATCTTCGATCTGCTTCGATGTA
* *
10599539 AACATACGAATGTCAGTTCTGCTATCTTCGATCTGCTCCCCGTGTAATACAGAGACGCCAAATCT
65 AACA-ACGAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCT
* * *
10599604 TTCATTTTCGATCTGCTTCGATGTAAACACACGAATATCAGATCTGCTAT
129 GTCATTTTCGATCTGCTTCGATGTAAACACACGAATACCAGATCTACTAT
* * * * *
10599654 CTTCGATTTGCTCCCCGTCTAATATAGAGACATCAAATCTATCATTTTCGATCTGCTTCGATGTA
1 CTTCGATCTGCTCCCCGTCTAATACAGAGACACCAAATCT-CCATCTTCGATCTGCTTCGATGTA
* *
10599719 AACAAACGAATGTCAGATCTGCTATCTTTGATCTGCTCTCCGTCTAATACAGAGACGCCAAATCT
65 AAC-AACGAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCT
* *
10599784 GTCATCTTCGATCTGCTTCGATGTAAACACACGAATGCCAGATCTACTAT
129 GTCATTTTCGATCTGCTTCGATGTAAACACACGAATACCAGATCTACTAT
* * * *
10599834 GTTCGATCTACTCCTCCGTCTAATACATAGACGCCAAATCTGCCATCTTCGATCTGCTTC-----
1 CTTCGATCTGCTCC-CCGTCTAATACAGAGACACCAAATCT-CCATCTTCGATCTGCTTCGATGT
* * * * *
10599894 --AC-ACGAATGTCAAATCTACTATCTTCGATCTGTTCCCCATCTAATACGGAGACGCCAAATCT
64 AAACAACGAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCT
*
10599956 GTCATTTTCAATCTGCT
129 GTCATTTTCGATCTGCT
10599973 CCCCATCTAA
Statistics
Matches: 278, Mismatches: 38, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
172 68 0.24
174 2 0.01
179 4 0.01
180 165 0.59
181 39 0.14
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.32
Consensus pattern (178 bp):
CTTCGATCTGCTCCCCGTCTAATACAGAGACACCAAATCTCCATCTTCGATCTGCTTCGATGTAA
ACAACGAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
CATTTTCGATCTGCTTCGATGTAAACACACGAATACCAGATCTACTAT
Found at i:10599954 original size:81 final size:82
Alignment explanation
Indices: 10599811--10599972 Score: 218
Period size: 81 Copynumber: 2.0 Consensus size: 82
10599801 TCGATGTAAA
* * * *
10599811 CACACGAATGCCAGATCTACTATGTTCGATCTACTCCTCCGTCTAATACATAGACGCCAAATCTG
1 CACACGAATGCCAAATCTACTATCTTCGATCTACTCCTCCATCTAATACAGAGACGCCAAATCTG
*
10599876 CCATCTTCGATCTGCTT
66 CCATCTTCAATCTGCTT
* ** *
10599893 CACACGAATGTCAAATCTACTATCTTCGATCTGTTCC-CCATCTAATACGGAGACGCCAAATCTG
1 CACACGAATGCCAAATCTACTATCTTCGATCTACTCCTCCATCTAATACAGAGACGCCAAATCTG
* *
10599957 TCATTTTCAATCTGCT
66 CCATCTTCAATCTGCT
10599973 CCCCATCTAA
Statistics
Matches: 69, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
81 37 0.54
82 32 0.46
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.30
Consensus pattern (82 bp):
CACACGAATGCCAAATCTACTATCTTCGATCTACTCCTCCATCTAATACAGAGACGCCAAATCTG
CCATCTTCAATCTGCTT
Found at i:10612016 original size:13 final size:13
Alignment explanation
Indices: 10611998--10612023 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10611988 AAACTTTAAT
10611998 AATAATTTACAAA
1 AATAATTTACAAA
10612011 AATAATTTACAAA
1 AATAATTTACAAA
10612024 TTTTAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
AATAATTTACAAA
Found at i:10612053 original size:7 final size:7
Alignment explanation
Indices: 10612038--10612089 Score: 52
Period size: 7 Copynumber: 7.3 Consensus size: 7
10612028 AAAATTATAC
*
10612038 ATAATTA
1 ATAAATA
10612045 ATAAATA
1 ATAAATA
10612052 ATAAATA
1 ATAAATA
10612059 ATAAAATA
1 AT-AAATA
* *
10612067 TTATATA
1 ATAAATA
10612074 ATAAAATA
1 AT-AAATA
10612082 A-AAATA
1 ATAAATA
10612088 AT
1 AT
10612090 GTAAGGGATA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
6 6 0.16
7 20 0.54
8 11 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (7 bp):
ATAAATA
Found at i:10612066 original size:19 final size:19
Alignment explanation
Indices: 10612044--10612195 Score: 53
Period size: 19 Copynumber: 8.4 Consensus size: 19
10612034 ATACATAATT
10612044 AATAAATAATAAATAATAA
1 AATAAATAATAAATAATAA
*
10612063 AAT--AT--TATATAATAA
1 AATAAATAATAAATAATAA
*
10612078 AATAAA-AAT-AAT-GTAA
1 AATAAATAATAAATAATAA
* *
10612094 GGGAT-AAT-ATATATAATAA
1 --AATAAATAATAAATAATAA
* *
10612113 AATATATAATATATAATAA
1 AATAAATAATAAATAATAA
** *
10612132 AATTTATAAATAAA-ATATAT
1 AATAAAT-AATAAATA-ATAA
*
10612152 AATAGAAT-ATAAATAATATG
1 AATA-AATAATAAATAATA-A
*
10612172 AA-AAATAATATAT-A-AA
1 AATAAATAATAAATAATAA
10612188 AATAAATA
1 AATAAATA
10612196 TATATACTAT
Statistics
Matches: 99, Mismatches: 16, Indels: 38
0.65 0.10 0.25
Matches are distributed among these distances:
15 12 0.12
16 5 0.05
17 17 0.17
18 11 0.11
19 38 0.38
20 14 0.14
21 2 0.02
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (19 bp):
AATAAATAATAAATAATAA
Found at i:10612074 original size:15 final size:15
Alignment explanation
Indices: 10612038--10612089 Score: 63
Period size: 15 Copynumber: 3.6 Consensus size: 15
10612028 AAAATTATAC
*
10612038 ATAATTAAT-AAATA
1 ATAAATAATAAAATA
10612052 ATAAATAATAAAATA
1 ATAAATAATAAAATA
* *
10612067 TTATATAATAAAATA
1 ATAAATAATAAAATA
10612082 A-AAATAAT
1 ATAAATAAT
10612090 GTAAGGGATA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
14 14 0.44
15 18 0.56
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
ATAAATAATAAAATA
Found at i:10612112 original size:12 final size:12
Alignment explanation
Indices: 10612097--10612201 Score: 80
Period size: 12 Copynumber: 9.0 Consensus size: 12
10612087 AATGTAAGGG
10612097 ATAATATATATA
1 ATAATATATATA
*
10612109 ATAAAATATATA
1 ATAATATATATA
10612121 AT-ATATA-ATA
1 ATAATATATATA
*
10612131 A-AATTTATA-A
1 ATAATATATATA
*
10612141 ATAAAATATATA
1 ATAATATATATA
10612153 ATAGA-ATATA-A
1 ATA-ATATATATA
*
10612164 ATAATATGA-AAA
1 ATAATAT-ATATA
*
10612176 ATAATATATAAAA
1 ATAATATAT-ATA
10612189 ATAAATATATATA
1 AT-AATATATATA
10612202 CTATTTTTAC
Statistics
Matches: 76, Mismatches: 6, Indels: 21
0.74 0.06 0.20
Matches are distributed among these distances:
10 11 0.14
11 19 0.25
12 31 0.41
13 8 0.11
14 7 0.09
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (12 bp):
ATAATATATATA
Found at i:10612118 original size:14 final size:14
Alignment explanation
Indices: 10612099--10612201 Score: 57
Period size: 16 Copynumber: 6.7 Consensus size: 14
10612089 TGTAAGGGAT
10612099 AATATATATAATAA
1 AATATATATAATAA
10612113 AATATATAATATATAA
1 AATATAT-ATA-ATAA
* *
10612129 TAAAATTTATAAATAA
1 -AATATATAT-AATAA
10612145 AATATATAATAGAATATA
1 AATATAT-AT--AATA-A
*
10612163 AATA-ATATGA-AA
1 AATATATATAATAA
*
10612175 AATAATATATAAAAATA
1 AAT-ATATAT-AATA-A
10612192 AATATATATA
1 AATATATATA
10612202 CTATTTTTAC
Statistics
Matches: 70, Mismatches: 7, Indels: 23
0.70 0.07 0.23
Matches are distributed among these distances:
12 4 0.06
13 2 0.03
14 12 0.17
15 10 0.14
16 21 0.30
17 16 0.23
18 5 0.07
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (14 bp):
AATATATATAATAA
Found at i:10612125 original size:7 final size:7
Alignment explanation
Indices: 10612102--10612155 Score: 55
Period size: 7 Copynumber: 8.4 Consensus size: 7
10612092 AAGGGATAAT
10612102 ATATATA
1 ATATATA
10612109 ATA-A-A
1 ATATATA
10612114 ATATATA
1 ATATATA
10612121 ATATATA
1 ATATATA
10612128 ATA-A-A
1 ATATATA
*
10612133 ATTTATA
1 ATATATA
*
10612140 A-ATAAA
1 ATATATA
10612146 ATATATA
1 ATATATA
10612153 ATA
1 ATA
10612156 GAATATAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
5 7 0.18
6 8 0.21
7 23 0.61
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (7 bp):
ATATATA
Found at i:10612145 original size:13 final size:13
Alignment explanation
Indices: 10612120--10612201 Score: 59
Period size: 13 Copynumber: 6.6 Consensus size: 13
10612110 TAAAATATAT
10612120 AATATAT-AATAA
1 AATATATAAATAA
*
10612132 AATTTATAAATAA
1 AATATATAAATAA
10612145 AATATAT-AAT-A
1 AATATATAAATAA
*
10612156 GA-ATATAAAT--
1 AATATATAAATAA
*
10612166 AATATGAAAAATAA
1 AATAT-ATAAATAA
* *
10612180 TATATAAAAATAA
1 AATATATAAATAA
10612193 ATATATATA
1 A-ATATATA
10612202 CTATTTTTAC
Statistics
Matches: 55, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
10 5 0.09
11 7 0.13
12 14 0.25
13 19 0.35
14 10 0.18
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (13 bp):
AATATATAAATAA
Found at i:10612154 original size:25 final size:23
Alignment explanation
Indices: 10612097--10612199 Score: 81
Period size: 23 Copynumber: 4.5 Consensus size: 23
10612087 AATGTAAGGG
*
10612097 ATAATATATATAATAAAATAT--
1 ATAAAATATATAATAAAATATAA
10612118 AT--AATATATAATAAAATTTATAA
1 ATAAAATATATAATAAAA--TATAA
*
10612141 ATAAAATATATAATAGAATATAA
1 ATAAAATATATAATAAAATATAA
* * *
10612164 ATAATATGA-AAAATAATATATAA
1 ATAAAAT-ATATAATAAAATATAA
*
10612187 AAATAAATATATA
1 ATA-AAATATATA
10612200 TACTATTTTT
Statistics
Matches: 64, Mismatches: 9, Indels: 15
0.73 0.10 0.17
Matches are distributed among these distances:
19 13 0.20
21 5 0.08
23 27 0.42
24 6 0.09
25 13 0.20
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (23 bp):
ATAAAATATATAATAAAATATAA
Found at i:10612155 original size:44 final size:46
Alignment explanation
Indices: 10612098--10612199 Score: 54
Period size: 44 Copynumber: 2.2 Consensus size: 46
10612088 ATGTAAGGGA
*
10612098 TAATATATATAATAAAATATATAATATATAATA-AAAT-TTAT-AAATAA
1 TAATATATA-AATAAAATATATAATA-A-AATATAAATAATATGAAA-AA
* * * *
10612145 -AATATAT-AATAGAATATA-AATAATATGAAAAATAATATATAAAAA
1 TAATATATAAATAAAATATATAATAAAAT-ATAAATAATAT-GAAAAA
10612190 TAAATATATA
1 T-AATATATA
10612200 TACTATTTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 15
0.71 0.05 0.24
Matches are distributed among these distances:
41 2 0.05
42 2 0.05
43 8 0.18
44 13 0.30
45 2 0.05
46 10 0.23
47 7 0.16
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (46 bp):
TAATATATAAATAAAATATATAATAAAATATAAATAATATGAAAAA
Found at i:10612164 original size:32 final size:33
Alignment explanation
Indices: 10612027--10612164 Score: 113
Period size: 33 Copynumber: 4.1 Consensus size: 33
10612017 TTACAAATTT
* * *
10612027 TAAAATTATACATAAT-TAATAAATAATAAATAA
1 TAAAATT-TATATAATAAAATATATAATAAATAA
* *
10612060 TAAAATATTATATAATAAAATA-AAAATAATGTAA
1 TAAAAT-TTATATAATAAAATATATAATAA-ATAA
* * * *
10612094 GGGATAATATATATAATAAAATATATAATATATAA
1 --TAAAATTTATATAATAAAATATATAATAAATAA
10612129 TAAAATTTATA-AATAAAATATATAATAGAAT-A
1 TAAAATTTATATAATAAAATATATAATA-AATAA
10612161 TAAA
1 TAAA
10612165 TAATATGAAA
Statistics
Matches: 84, Mismatches: 14, Indels: 15
0.74 0.12 0.13
Matches are distributed among these distances:
32 21 0.25
33 29 0.35
34 8 0.10
35 17 0.20
36 9 0.11
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (33 bp):
TAAAATTTATATAATAAAATATATAATAAATAA
Found at i:10612261 original size:27 final size:29
Alignment explanation
Indices: 10612230--10612283 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
10612220 CTAATGTCTA
10612230 TAAAAAT-AAAT-AATATATAAAAAAATT
1 TAAAAATGAAATAAATATATAAAAAAATT
* *
10612257 TAAAAATGAATTAAATATATATAAAAA
1 TAAAAATGAAATAAATATATAAAAAAA
10612284 GGATTAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 7 0.30
28 3 0.13
29 13 0.57
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.30
Consensus pattern (29 bp):
TAAAAATGAAATAAATATATAAAAAAATT
Found at i:10612280 original size:31 final size:32
Alignment explanation
Indices: 10612236--10612305 Score: 90
Period size: 31 Copynumber: 2.2 Consensus size: 32
10612226 TCTATAAAAA
10612236 TAAATAATATATAAAAA-AATTTAAAAATGAA-T
1 TAAAT-ATATATAAAAAGAA-TTAAAAATGAATT
* *
10612268 TAAATATATATAAAAAGGATTAAAATTGAATT
1 TAAATATATATAAAAAGAATTAAAAATGAATT
10612300 TAAATA
1 TAAATA
10612306 AAAAAATCTA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
31 21 0.62
32 13 0.38
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (32 bp):
TAAATATATATAAAAAGAATTAAAAATGAATT
Found at i:10613542 original size:10 final size:10
Alignment explanation
Indices: 10613529--10613564 Score: 63
Period size: 10 Copynumber: 3.5 Consensus size: 10
10613519 ACTTTTATTA
10613529 TTTTTTGTTTT
1 TTTTTTG-TTT
10613540 TTTTTTGTTT
1 TTTTTTGTTT
10613550 TTTTTTGTTT
1 TTTTTTGTTT
10613560 TTTTT
1 TTTTT
10613565 CTGGGACGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 18 0.72
11 7 0.28
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (10 bp):
TTTTTTGTTT
Found at i:10613545 original size:11 final size:11
Alignment explanation
Indices: 10613529--10613564 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
10613519 ACTTTTATTA
10613529 TTTTTTGTTTT
1 TTTTTTGTTTT
10613540 TTTTTTG-TTT
1 TTTTTTGTTTT
10613550 TTTTTTGTTTT
1 TTTTTTGTTTT
10613561 TTTT
1 TTTT
10613565 CTGGGACGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 10 0.42
11 14 0.58
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (11 bp):
TTTTTTGTTTT
Found at i:10613545 original size:21 final size:21
Alignment explanation
Indices: 10613521--10613564 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
10613511 TGTAAAGGAC
10613521 TTTTATTATTTTTTGTTTTTT
1 TTTTATTATTTTTTGTTTTTT
* *
10613542 TTTTGTTTTTTTTTGTTTTTT
1 TTTTATTATTTTTTGTTTTTT
10613563 TT
1 TT
10613565 CTGGGACGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.05, C:0.00, G:0.07, T:0.89
Consensus pattern (21 bp):
TTTTATTATTTTTTGTTTTTT
Found at i:10614665 original size:17 final size:17
Alignment explanation
Indices: 10614643--10614700 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
10614633 TTTAACTTTA
10614643 TCATTTCAACTAAAGTC
1 TCATTTCAACTAAAGTC
* ** *
10614660 TCATTT-AATTTAACTTTA
1 TCATTTCAA-CTAA-AGTC
10614678 TCATTTCAACTAAAGTC
1 TCATTTCAACTAAAGTC
10614695 TCATTT
1 TCATTT
10614701 AATTTTTATG
Statistics
Matches: 30, Mismatches: 8, Indels: 6
0.68 0.18 0.14
Matches are distributed among these distances:
16 2 0.07
17 16 0.53
18 10 0.33
19 2 0.07
ACGTcount: A:0.33, C:0.19, G:0.03, T:0.45
Consensus pattern (17 bp):
TCATTTCAACTAAAGTC
Found at i:10614674 original size:35 final size:35
Alignment explanation
Indices: 10614632--10614705 Score: 148
Period size: 35 Copynumber: 2.1 Consensus size: 35
10614622 AATTTTAAAT
10614632 ATTTAACTTTATCATTTCAACTAAAGTCTCATTTA
1 ATTTAACTTTATCATTTCAACTAAAGTCTCATTTA
10614667 ATTTAACTTTATCATTTCAACTAAAGTCTCATTTA
1 ATTTAACTTTATCATTTCAACTAAAGTCTCATTTA
10614702 ATTT
1 ATTT
10614706 TTATGTCAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.34, C:0.16, G:0.03, T:0.47
Consensus pattern (35 bp):
ATTTAACTTTATCATTTCAACTAAAGTCTCATTTA
Found at i:10616793 original size:15 final size:15
Alignment explanation
Indices: 10616756--10616806 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
10616746 ATAGGCCATA
*
10616756 AAAATAAGAATA-G-
1 AAAATAATAATATGT
*
10616769 AAATTAATAATATGT
1 AAAATAATAATATGT
*
10616784 AAAATAATAATATAT
1 AAAATAATAATATGT
*
10616799 AAATTAAT
1 AAAATAAT
10616807 TTTATAATGA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
13 10 0.32
14 1 0.03
15 20 0.65
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (15 bp):
AAAATAATAATATGT
Found at i:10629092 original size:125 final size:126
Alignment explanation
Indices: 10628953--10629363 Score: 454
Period size: 127 Copynumber: 3.2 Consensus size: 126
10628943 TCCAAACGGT
* * * * * * * * *
10628953 AAATCGAAACCCAGCACGATTGGGCATGATTTATCAAATTTCCGAATACGAGACATCGCCTCATT
1 AAATCGAAACCCAGCACGATTGGGCACGATTTCTCAAACTTCCAAACACGAAATATTGCCTCGTT
*
10629018 TTAATTTGAGAAAACATGGATGAAATTTC-AAAAGGATATTCTGTATTTTAGTCGAATGGA
66 TTAATTTAAGAAAACATGGATGAAATTTCAAAAAGGATATTCTGTATTTTAGTCGAATGGA
* * * *
10629078 AAATTGAAGCCCAGCACGATTGGGCACGACTTCCCAAACTTCCAAACACGAAATATTGCCTCGTT
1 AAATCGAAACCCAGCACGATTGGGCACGATTTCTCAAACTTCCAAACACGAAATATTGCCTCGTT
* * *
10629143 TT-ATTCTAAGAAAACGT-GATGAAATTTCAAAAAAAGGATATTCTATATTTTAGTCGAATGAA
66 TTAATT-TAAGAAAACATGGATGAAATTTC--AAAAAGGATATTCTGTATTTTAGTCGAATGGA
* * **
10629205 AAAACGAAACCCAGAACGATTGGGCACGATCCCTCAAACTTCCAAACACGAAATATTGCCTCGTT
1 AAATCGAAACCCAGCACGATTGGGCACGATTTCTCAAACTTCCAAACACGAAATATTGCCTCGTT
* * * * ** * *
10629270 TAAATTTTTA-AAAGCATGGACGAAATTTCGGAAA-GATATTCCGTATTTTAGTTGAATGGAAAA
66 TTAA-TTTAAGAAAACATGGATGAAATTTCAAAAAGGATATTCTGTATTTTAGTCGAATGG----
10629333 A
126 A
10629334 AAATCGAAACCCAGCACGATTGGGCACGAT
1 AAATCGAAACCCAGCACGATTGGGCACGAT
10629364 CCCTCGGACC
Statistics
Matches: 237, Mismatches: 38, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
124 14 0.06
125 84 0.35
126 3 0.01
127 92 0.39
128 13 0.05
129 31 0.13
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (126 bp):
AAATCGAAACCCAGCACGATTGGGCACGATTTCTCAAACTTCCAAACACGAAATATTGCCTCGTT
TTAATTTAAGAAAACATGGATGAAATTTCAAAAAGGATATTCTGTATTTTAGTCGAATGGA
Found at i:10630145 original size:2 final size:2
Alignment explanation
Indices: 10630138--10630169 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
10630128 CATTTTTAAA
10630138 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10630170 GAATGAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10631541 original size:44 final size:44
Alignment explanation
Indices: 10631507--10631639 Score: 140
Period size: 44 Copynumber: 3.0 Consensus size: 44
10631497 AAGGTTGATG
10631507 ACTAAGATCTGCTCCATCTTCAATACATGGAGATAAGATCTGTA
1 ACTAAGATCTGCTCCATCTTCAATACATGGAGATAAGATCTGTA
* ** * *
10631551 ATTTTGATTTGCTCCATCTTCAATACATAGAGATAAGATCTGTA
1 ACTAAGATCTGCTCCATCTTCAATACATGGAGATAAGATCTGTA
* ** * *** * *
10631595 ATTTTGATTTGCTCCATAGCCGATACATGGAGATAAGGTCTGTA
1 ACTAAGATCTGCTCCATCTTCAATACATGGAGATAAGATCTGTA
10631639 A
1 A
10631640 TTTCCAGTCT
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 78 1.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (44 bp):
ACTAAGATCTGCTCCATCTTCAATACATGGAGATAAGATCTGTA
Found at i:10631640 original size:44 final size:44
Alignment explanation
Indices: 10631527--10631642 Score: 178
Period size: 44 Copynumber: 2.6 Consensus size: 44
10631517 GCTCCATCTT
***
10631527 CAATACATGGAGATAAGATCTGTAATTTTGATTTGCTCCATCTT
1 CAATACATGGAGATAAGATCTGTAATTTTGATTTGCTCCATAGC
*
10631571 CAATACATAGAGATAAGATCTGTAATTTTGATTTGCTCCATAGC
1 CAATACATGGAGATAAGATCTGTAATTTTGATTTGCTCCATAGC
* *
10631615 CGATACATGGAGATAAGGTCTGTAATTT
1 CAATACATGGAGATAAGATCTGTAATTT
10631643 CCAGTCTGCT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 65 1.00
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (44 bp):
CAATACATGGAGATAAGATCTGTAATTTTGATTTGCTCCATAGC
Found at i:10631870 original size:43 final size:44
Alignment explanation
Indices: 10631820--10631903 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
10631810 TCTGTAAGTT
*
10631820 TTCAGTCTGCTTC-CTGCAACTTCAAAAAGATAAGACTTGTATC
1 TTCAGTCTGCTCCACTGCAACTTCAAAAAGATAAGACTTGTATC
* ***
10631863 TTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGT
1 TTCAGTCTGCTCCACTGCAACTTCAAAAAGATAAGACTTGT
10631904 GGCTAAAAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
43 12 0.34
44 23 0.66
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (44 bp):
TTCAGTCTGCTCCACTGCAACTTCAAAAAGATAAGACTTGTATC
Found at i:10631984 original size:179 final size:178
Alignment explanation
Indices: 10631596--10632611 Score: 1396
Period size: 178 Copynumber: 5.7 Consensus size: 178
10631586 AGATCTGTAA
* * *
10631596 TTTTGATTTGCTCCATAGCCGATACATGGAGATAAGGTCTGTAA-TTTCCAGTCTGCTTCCTGCA
1 TTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAAGTTTTCAGTCTGCTTCCTGCA
* * * * * * *
10631660 ACTTCAGGAAGATAAGACTTGTATATTGAGCCTGCTCCACCGCAATTTTAAGGAGATAAGGC-TG
66 ACTTCAGGAAGATAAGACTTGTATCTTCAACCTGCTCCACTGCAACTTTAGGGAGATAAGACTTG
* * *
10631724 ATGGCTAAAATCTGCTCCATAGCCGACACATGAAGATAAGATTCGCCAT
131 -TGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCAT
* * *
10631773 TTTCGATCTGCTTCATAACCGATACATGGAGATAAGATCTGTAAGTTTTCAGTCTGCTTCCTGCA
1 TTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAAGTTTTCAGTCTGCTTCCTGCA
** **
10631838 ACTTCAAAAAGATAAGACTTGTATCTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTG
66 ACTTCAGGAAGATAAGACTTGTATCTTCAACCTGCTCCACTGCAACTTTAGGGAGATAAGACTTG
*
10631903 TGGCTAAAAATCTACTCCATAGCCGATACATGGAGATAAGACTCGCCAT
131 TGGCT-AAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCAT
* *
10631952 TTTTGATCTGCTTCATAGCCGATACATGGAGATAAGATCTGTAAGTTTTTAGTCTGCTTCCTGCA
1 TTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAAGTTTTCAGTCTGCTTCCTGCA
* * *
10632017 ACTTCAGGAAGATAAGACATGTATCTTTAACCTGCTCCACTGCAACTTTAGGGAGATAATG-CTG
66 ACTTCAGGAAGATAAGACTTGTATCTTCAACCTGCTCCACTGCAACTTTAGGGAGATAA-GACTT
** *
10632081 GTGGCTAAAATCTGCTCCATAGCCGATACATAAAGATAAGATTCGCCAT
130 GTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCAT
* * *
10632130 TTTTGACCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAAGTTTTCAGTTTGCTTCTTGCA
1 TTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAAGTTTTCAGTCTGCTTCCTGCA
* * * * * *
10632195 ACTTTAAGAAGATAAGACTTGTATCTTCAATCTACTCCACTACAACTTCAGGGAGATAAGACTTG
66 ACTTCAGGAAGATAAGACTTGTATCTTCAACCTGCTCCACTGCAACTTTAGGGAGATAAGACTTG
*
10632260 TGGCTAAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCTCCAT
131 TGGCT-AAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCAT
* * *
10632309 TTTTGATCTACTCCATAGCTGATACATGGAGATAAGATCTGTAAGTTTTCAATCTGCTTCCTGCA
1 TTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAAGTTTTCAGTCTGCTTCCTGCA
* * * * * * * * *
10632374 ACTTCAGGAAGATAAGACCTCTATCTTTAATCTGCTCTC-TTGCTACCTTAGAGATATAA-AGCT
66 ACTTCAGGAAGATAAGACTTGTATCTTCAACCTGCTC-CACTGCAACTTTAGGGAGATAAGA-CT
* * * *
10632437 GGTGGCTAAAATATGCTCCATAGCCGACACATGGAGATAAGACTCACCAT
129 TGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCAT
*
10632487 TTTTGATCTGCTCCATAGTCGATACATGGAGATAAGATCTGTAA-TTTTCAGTCTGCTTCCTGCA
1 TTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAAGTTTTCAGTCTGCTTCCTGCA
* * *
10632551 ACTTCAGGAAGATAAGACTTGCTATCTTCAACCCGCTCTACTGCAACTTCAGGGAGATAAG
66 ACTTCAGGAAGATAAGACTTG-TATCTTCAACCTGCTCCACTGCAACTTTAGGGAGATAAG
10632612 GTTTGTAATC
Statistics
Matches: 738, Mismatches: 90, Indels: 20
0.87 0.11 0.02
Matches are distributed among these distances:
177 78 0.11
178 344 0.47
179 314 0.43
180 2 0.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.30
Consensus pattern (178 bp):
TTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAAGTTTTCAGTCTGCTTCCTGCA
ACTTCAGGAAGATAAGACTTGTATCTTCAACCTGCTCCACTGCAACTTTAGGGAGATAAGACTTG
TGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCAT
Found at i:10632300 original size:357 final size:357
Alignment explanation
Indices: 10631596--10632611 Score: 1534
Period size: 357 Copynumber: 2.8 Consensus size: 357
10631586 AGATCTGTAA
* * *
10631596 TTTTGATTTGCTCCATAGCCGATACATGGAGATAAGGTCTGTAA-TTTCCAGTCTGCTTCCTGCA
1 TTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAAGTTTTCAGTCTGCTTCCTGCA
* * * * * * * * *
10631660 ACTTCAGGAAGATAAGACTTGTATATTGAGCCTGCTCCACCGCAATTTTAAGGAGATAAGGCTGA
66 ACTTCAGGAAGATAAGACATGTATCTTTAACCTGCTCCACTGCAACTTTAGGGAGATAAAGCTGG
* *
10631725 TGGCTAAAATCTGCTCCATAGCCGACACATGAAGATAAGATTCGCCATTTTCGATCTGCTTCATA
131 TGGCTAAAATCTGCTCCATAGCCGACACATGAAGATAAGATTCGCCATTTTTGATCTGCTCCATA
* *
10631790 ACCGATACATGGAGATAAGATCTGTAAGTTTTCAGTCTGCTTCCTGCAACTTCAAAAAGATAAGA
196 GCCGATACATGGAGATAAGATCTGTAAGTTTTCAGTCTGCTTCCTGCAACTTCAAGAAGATAAGA
* *
10631855 CTTGTATCTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGTGGCTAAAAATCTACTC
261 CTTGTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGGCTAAAAATCTACTC
10631920 CATAGCCGATACATGGAGATAAGACTCGCCAT
326 CATAGCCGATACATGGAGATAAGACTCGCCAT
* *
10631952 TTTTGATCTGCTTCATAGCCGATACATGGAGATAAGATCTGTAAGTTTTTAGTCTGCTTCCTGCA
1 TTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAAGTTTTCAGTCTGCTTCCTGCA
*
10632017 ACTTCAGGAAGATAAGACATGTATCTTTAACCTGCTCCACTGCAACTTTAGGGAGATAATGCTGG
66 ACTTCAGGAAGATAAGACATGTATCTTTAACCTGCTCCACTGCAACTTTAGGGAGATAAAGCTGG
* * *
10632082 TGGCTAAAATCTGCTCCATAGCCGATACATAAAGATAAGATTCGCCATTTTTGACCTGCTCCATA
131 TGGCTAAAATCTGCTCCATAGCCGACACATGAAGATAAGATTCGCCATTTTTGATCTGCTCCATA
* * *
10632147 GCCGATACATGGAGATAAGATCTGTAAGTTTTCAGTTTGCTTCTTGCAACTTTAAGAAGATAAGA
196 GCCGATACATGGAGATAAGATCTGTAAGTTTTCAGTCTGCTTCCTGCAACTTCAAGAAGATAAGA
* * *
10632212 CTTGTATCTTCAATCTACTCCACTACAACTTCAGGGAGATAAGACTTGTGGCTAAAAATCTGCTC
261 CTTGTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGGCTAAAAATCTACTC
*
10632277 CATAGCCGATACATGGAGATAAGACTCTCCAT
326 CATAGCCGATACATGGAGATAAGACTCGCCAT
* * *
10632309 TTTTGATCTACTCCATAGCTGATACATGGAGATAAGATCTGTAAGTTTTCAATCTGCTTCCTGCA
1 TTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAAGTTTTCAGTCTGCTTCCTGCA
* * * * * * * *
10632374 ACTTCAGGAAGATAAGACCTCTATCTTTAATCTGCTCTC-TTGCTACCTTAGAGATATAAAGCTG
66 ACTTCAGGAAGATAAGACATGTATCTTTAACCTGCTC-CACTGCAACTTTAGGGAGATAAAGCTG
* * * *
10632438 GTGGCTAAAATATGCTCCATAGCCGACACATGGAGATAAGACTCACCATTTTTGATCTGCTCCAT
130 GTGGCTAAAATCTGCTCCATAGCCGACACATGAAGATAAGATTCGCCATTTTTGATCTGCTCCAT
* *
10632503 AGTCGATACATGGAGATAAGATCTGTAA-TTTTCAGTCTGCTTCCTGCAACTTCAGGAAGATAAG
195 AGCCGATACATGGAGATAAGATCTGTAAGTTTTCAGTCTGCTTCCTGCAACTTCAAGAAGATAAG
* * *
10632567 ACTTGCTATCTTCAACCCGCTCTACTGCAACTTCAGGGAGATAAG
260 ACTTG-TATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
10632612 GTTTGTAATC
Statistics
Matches: 596, Mismatches: 61, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
356 78 0.13
357 517 0.87
358 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.30
Consensus pattern (357 bp):
TTTTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAAGTTTTCAGTCTGCTTCCTGCA
ACTTCAGGAAGATAAGACATGTATCTTTAACCTGCTCCACTGCAACTTTAGGGAGATAAAGCTGG
TGGCTAAAATCTGCTCCATAGCCGACACATGAAGATAAGATTCGCCATTTTTGATCTGCTCCATA
GCCGATACATGGAGATAAGATCTGTAAGTTTTCAGTCTGCTTCCTGCAACTTCAAGAAGATAAGA
CTTGTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGGCTAAAAATCTACTC
CATAGCCGATACATGGAGATAAGACTCGCCAT
Found at i:10632835 original size:64 final size:64
Alignment explanation
Indices: 10632725--10632849 Score: 198
Period size: 64 Copynumber: 2.0 Consensus size: 64
10632715 TTATGTATTT
* *
10632725 ATGCTTATGCCAAATAATTAGGATGCTATGATCGAAATAATCCAAGTGCTCCTAGCTAGATATG
1 ATGCTTATGCCAAATAATTAGGATGCTATGATCAAAATAATCCAAGTGCTCCTAACTAGATATG
* *
10632789 ATGCTTATGTCAAATAATTAGGATGTTATGATCAAAATGAAT-CAAGTGCTCCTAACTAGAT
1 ATGCTTATGCCAAATAATTAGGATGCTATGATCAAAAT-AATCCAAGTGCTCCTAACTAGAT
10632850 GTATTATGAA
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
64 53 0.95
65 3 0.05
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGATGCTATGATCAAAATAATCCAAGTGCTCCTAACTAGATATG
Found at i:10639304 original size:60 final size:60
Alignment explanation
Indices: 10639226--10639362 Score: 181
Period size: 60 Copynumber: 2.3 Consensus size: 60
10639216 CAGTGTTAAC
*
10639226 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCC-CTTAC-AGTATCG-GAGTATAT
1 TGGGCC-TAGCCCATATCAATATTAATCTGGGCCATAGCCCTATTACAAG--TCGAGA-TATAT
* *
10639287 TGGGCCTAGCCCATATCAGTATTAATCTGGGCCGTAGCCCTATTACAAGTCGAGATATAT
1 TGGGCCTAGCCCATATCAATATTAATCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
*
10639347 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
10639363 TAACACAATT
Statistics
Matches: 69, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
60 55 0.80
61 12 0.17
62 2 0.03
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (60 bp):
TGGGCCTAGCCCATATCAATATTAATCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
Found at i:10639318 original size:27 final size:28
Alignment explanation
Indices: 10639214--10639326 Score: 90
Period size: 28 Copynumber: 3.9 Consensus size: 28
10639204 CTATTCAGAA
* *
10639214 ATCAGTGTTAA-CTGGGCCTTAGCCCAT
1 ATCAGTATTAATCTGGGCCATAGCCCAT
* *
10639241 ATCAATATTAATCTGGGCCATAGCCCCT
1 ATCAGTATTAATCTGGGCCATAGCCCAT
10639269 -TACAGTATCGGAGTATAT-TGGGCC-TAGCCCAT
1 AT-CAGTAT-----TA-ATCTGGGCCATAGCCCAT
*
10639301 ATCAGTATTAATCTGGGCCGTAGCCC
1 ATCAGTATTAATCTGGGCCATAGCCC
10639327 TATTACAAGT
Statistics
Matches: 69, Mismatches: 6, Indels: 21
0.72 0.06 0.22
Matches are distributed among these distances:
26 2 0.03
27 18 0.26
28 25 0.36
32 13 0.19
33 9 0.13
34 2 0.03
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (28 bp):
ATCAGTATTAATCTGGGCCATAGCCCAT
Found at i:10647235 original size:125 final size:126
Alignment explanation
Indices: 10647090--10647479 Score: 376
Period size: 128 Copynumber: 3.1 Consensus size: 126
10647080 ATTTCTAAAT
* * * * *
10647090 ACGAAACATCGCCTCATTTTAATTTGAGAAAACATGGATGAAATTTC-AAAAGGATATTCTGTAT
1 ACGAAATATTGCCTCGTTTTAATTTAAGAAAACATGGATGAAATTTCAAAAAGGATATTCCGTAT
** * * ** * *
10647154 TTTAGTCGAATGAAAAATTGAAGCCCAACATGATTGGGCACGA-CTTTCCGAACTCCCGAAC
66 TTTAGTCGAATGAAAAAACGAAACCCAACACGATTGGGCACGATCCCT-CAAACTCCCAAAC
*
10647215 ACGAAATATTGCCTCGTTTT-ATTCTAAGAAAACATGGATGAAATTTCAAAAAAAGGATATTCCA
1 ACGAAATATTGCCTCGTTTTAATT-TAAGAAAACATGGATGAAATTTC--AAAAAGGATATTCCG
* * *
10647279 TAATTTAGTCGAATGAAAAAACGAAACCCAGCACGATTGGGCACGATCCCTCAAACTTCCAAAC
63 TATTTTAGTCGAATGAAAAAACGAAACCCAACACGATTGGGCACGATCCCTCAAACTCCCAAAC
* * * ** *
10647343 ACGAAATATTGCCTCGTTTAAATTTTTA-AAAGCATGGACAAAATTTCGAAAA-GATATTCCGTA
1 ACGAAATATTGCCTCGTTTTAA-TTTAAGAAAACATGGATGAAATTTCAAAAAGGATATTCCGTA
* * * * * * ** *
10647406 TTTTAGTTGAACGGAAAAAAAATTGAAATCCAGCACTATTGGGCACGATCCCTCGGACCCCCAAA
65 TTTTAGTCGAA-TG--AAAAAA-CGAAACCCAACACGATTGGGCACGATCCCTCAAACTCCCAAA
10647471 C
126 C
10647472 ACGAAATA
1 ACGAAATA
10647480 ATTTCTTAAG
Statistics
Matches: 220, Mismatches: 34, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
124 3 0.01
125 58 0.26
126 5 0.02
128 103 0.47
129 49 0.22
130 2 0.01
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.26
Consensus pattern (126 bp):
ACGAAATATTGCCTCGTTTTAATTTAAGAAAACATGGATGAAATTTCAAAAAGGATATTCCGTAT
TTTAGTCGAATGAAAAAACGAAACCCAACACGATTGGGCACGATCCCTCAAACTCCCAAAC
Found at i:10656049 original size:28 final size:28
Alignment explanation
Indices: 10656008--10656062 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
10655998 CAACCTATCT
*
10656008 AAACAAGTCTATCTATAATAAGAAAATA
1 AAACAAGTCCATCTATAATAAGAAAATA
10656036 AAACAAGTCCATCTATAATAAGAAAAT
1 AAACAAGTCCATCTATAATAAGAAAAT
10656063 GAAGGAGGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.56, C:0.13, G:0.07, T:0.24
Consensus pattern (28 bp):
AAACAAGTCCATCTATAATAAGAAAATA
Found at i:10659727 original size:4 final size:4
Alignment explanation
Indices: 10659718--10659742 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
10659708 GTGGCAACCA
10659718 CTTT CTTT CTTT CTTT CTTT CTTT C
1 CTTT CTTT CTTT CTTT CTTT CTTT C
10659743 GCTTATTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (4 bp):
CTTT
Found at i:10670439 original size:49 final size:49
Alignment explanation
Indices: 10670386--10670488 Score: 197
Period size: 49 Copynumber: 2.1 Consensus size: 49
10670376 TTTCACTTAA
*
10670386 TACTTAATTCACATGTGTTACTGAAACACATATATCATTATAACACTTT
1 TACTTAATTCACATGTATTACTGAAACACATATATCATTATAACACTTT
10670435 TACTTAATTCACATGTATTACTGAAACACATATATCATTATAACACTTT
1 TACTTAATTCACATGTATTACTGAAACACATATATCATTATAACACTTT
10670484 TACTT
1 TACTT
10670489 TCACATAACA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 53 1.00
ACGTcount: A:0.37, C:0.18, G:0.05, T:0.40
Consensus pattern (49 bp):
TACTTAATTCACATGTATTACTGAAACACATATATCATTATAACACTTT
Found at i:10674913 original size:16 final size:16
Alignment explanation
Indices: 10674894--10674925 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
10674884 AAATATTTTA
10674894 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
10674910 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
10674926 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:10675203 original size:50 final size:50
Alignment explanation
Indices: 10675136--10675369 Score: 256
Period size: 50 Copynumber: 4.6 Consensus size: 50
10675126 CTGGTATGCA
*
10675136 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* * * * *
10675186 TAGTAGCCTGCATTTAGTACTACACACT-TGACTTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACA-TGTGACCTATCAATCTGGTACACG
* * ** * * * *
10675236 TAGTAGCCTGCACTTAGTACTACACACGTTATTTGAAGTTAA-CGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT--A-TCAATCTGGTACACG
* *
10675288 TAGTAGCCTGCACTTAGTATTACACATGTGACCTATCAATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* *
10675338 TAGTAGCCTGCACTTAGTTCTACACACGTGAC
1 TAGTAGCCTGCACTTAGTACTACACATGTGAC
10675370 TCACAACAGA
Statistics
Matches: 148, Mismatches: 30, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
49 3 0.02
50 107 0.72
51 1 0.01
52 36 0.24
53 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
Found at i:10681579 original size:27 final size:27
Alignment explanation
Indices: 10681547--10681600 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
10681537 TTGTAAGTAT
10681547 GATGAAAAAGTATAAAATGCAATAGAA
1 GATGAAAAAGTATAAAATGCAATAGAA
*
10681574 GATGAAAAAGTATACAATGCAATAGAA
1 GATGAAAAAGTATAAAATGCAATAGAA
10681601 ATCATCATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.57, C:0.06, G:0.19, T:0.19
Consensus pattern (27 bp):
GATGAAAAAGTATAAAATGCAATAGAA
Found at i:10684344 original size:25 final size:26
Alignment explanation
Indices: 10684324--10684379 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
10684314 GAAGCTCCGG
*
10684324 AGAGCCATTAATTAGGAAGCTCACAA
1 AGAGCCATTAATCAGGAAGCTCACAA
*
10684350 AGAGCCTTTAATCAGGAAGCTCA-AA
1 AGAGCCATTAATCAGGAAGCTCACAA
10684375 AGAGC
1 AGAGC
10684380 TAAGGTGTGC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
25 7 0.25
26 21 0.75
ACGTcount: A:0.41, C:0.20, G:0.21, T:0.18
Consensus pattern (26 bp):
AGAGCCATTAATCAGGAAGCTCACAA
Found at i:10688137 original size:32 final size:32
Alignment explanation
Indices: 10688101--10688164 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
10688091 CAATGAAACA
*
10688101 TATTAACATTAACAGAAGAAAATAAAACTATC
1 TATTAACATTAACAGAAGAAAACAAAACTATC
*
10688133 TATTAACATTAACAGAAGAAAACAGAACTATC
1 TATTAACATTAACAGAAGAAAACAAAACTATC
10688165 ATAGGAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.55, C:0.14, G:0.08, T:0.23
Consensus pattern (32 bp):
TATTAACATTAACAGAAGAAAACAAAACTATC
Found at i:10695716 original size:17 final size:19
Alignment explanation
Indices: 10695619--10695709 Score: 145
Period size: 19 Copynumber: 4.9 Consensus size: 19
10695609 ATAATCTTCA
10695619 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
10695638 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
10695657 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
10695674 ATGAT-TGCAAT-TATAGAT
1 ATGATATGCAATCT-TAGAT
10695692 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
10695710 AGATATGATT
Statistics
Matches: 67, Mismatches: 0, Indels: 10
0.87 0.00 0.13
Matches are distributed among these distances:
17 17 0.25
18 14 0.21
19 35 0.52
20 1 0.01
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:10696020 original size:18 final size:18
Alignment explanation
Indices: 10695997--10696034 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
10695987 CATGTTTCCC
10695997 TAATTTTTTT-ATATATTT
1 TAATTTTTTTAATA-ATTT
10696015 TAATTTTTTTAATAATTT
1 TAATTTTTTTAATAATTT
10696033 TA
1 TA
10696035 GTATCATATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TAATTTTTTTAATAATTT
Found at i:10706154 original size:89 final size:87
Alignment explanation
Indices: 10706025--10706186 Score: 202
Period size: 89 Copynumber: 1.8 Consensus size: 87
10706015 ATTCGATTGA
* * *
10706025 GAGCATATCGAAGACATAGCAGATCTAACCTTCAGATGTTTTCACATC-GAAGTAGATCCAAGAT
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTCAGATG-TTT-AC-GCGGAAGCAGATCCAAGAT
10706089 GATTTGGCATCCTTGCGTTGACAAG
63 GATTTGGCATCCTTGCGTTGACAAG
* ** * *
10706114 GAGCAGATCGAAGACATAGCAGATTTGGCTTTCACG-TGTTTACGCGGAAGCAGATCTAAGATGA
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTCA-GATGTTTACGCGGAAGCAGATCCAAGATGA
10706178 TTTGGCATC
65 TTTGGCATC
10706187 TCTGTACTGT
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
86 1 0.02
87 27 0.43
88 3 0.05
89 31 0.49
90 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (87 bp):
GAGCAGATCGAAGACATAGCAGATCTAACCTTCAGATGTTTACGCGGAAGCAGATCCAAGATGAT
TTGGCATCCTTGCGTTGACAAG
Found at i:10706307 original size:57 final size:57
Alignment explanation
Indices: 10706219--10706326 Score: 162
Period size: 57 Copynumber: 1.9 Consensus size: 57
10706209 TGAAGAAACA
* *
10706219 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCCAAGAT
1 GATTTGGCATCTCCATATTAGACGGAGAGCAGATCGAAGACACAGCAGATCCAAGAT
** * *
10706276 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGTAGATC
1 GATTTGGCATCTCCATATTAGACGGAGAGCAGATCGAAGACACAGCAGATC
10706327 TGACCTTCAT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 45 1.00
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.22
Consensus pattern (57 bp):
GATTTGGCATCTCCATATTAGACGGAGAGCAGATCGAAGACACAGCAGATCCAAGAT
Found at i:10706394 original size:78 final size:78
Alignment explanation
Indices: 10706262--10706492 Score: 392
Period size: 78 Copynumber: 3.0 Consensus size: 78
10706252 TCGAAGACAT
* *
10706262 AGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGTAGATC
1 AGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATC
10706327 TGACCTTCATTGA
66 TGACCTTCATTGA
* * *
10706340 AGCAGATCCAAGATGATTTGGCATCTTTGTATTAGACGGGGAGCAGATCAAAGACATAACAGAT-
1 AGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATC
10706404 TGGACCTTCATTGA
66 T-GACCTTCATTGA
*
10706418 AGCAGATCCAAGATTATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATC
1 AGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATC
10706483 TGACCTTCAT
66 TGACCTTCAT
10706493 GTGTTTACAT
Statistics
Matches: 142, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
77 1 0.01
78 140 0.99
79 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (78 bp):
AGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATC
TGACCTTCATTGA
Found at i:10706630 original size:44 final size:45
Alignment explanation
Indices: 10706433--10706705 Score: 261
Period size: 45 Copynumber: 6.0 Consensus size: 45
10706423 ATCCAAGATT
*
10706433 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACAG
* * * * * * * * *
10706480 ATCTGACCT-TCATGTGTTTACATC--GAAGTAGATCAAAGATGACAG
1 ATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAACAG
*
10706525 ATTTGGCATCTCTGTATTAGACGGGGAGCAAATC-AGAGATAACAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGA-AGATAACAG
* * *
10706570 ATTTGGCATCTCTGTATTAGACGGGAAGCAGATTGAAGA-AGCAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAG
**
10706614 ATTTGGCATCTCTGTATTAGGTGGGGAGCAGATCGAAGATTAACAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGA-TAACAG
* * * *
10706660 ATTTCGCGTCTCTGTA-TAGACGGGGAGCAGATCAAAGATAGCAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAG
10706704 AT
1 AT
10706706 ATCGCCTTCC
Statistics
Matches: 182, Mismatches: 34, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
43 1 0.01
44 51 0.28
45 82 0.45
46 23 0.13
47 20 0.11
48 4 0.02
49 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (45 bp):
ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAG
Found at i:10706642 original size:89 final size:90
Alignment explanation
Indices: 10706433--10706705 Score: 272
Period size: 89 Copynumber: 3.0 Consensus size: 90
10706423 ATCCAAGATT
* * * * * *
10706433 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATGTGT
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGA-TTAACAGATTTCG--CATC-TCTGT
* * *
10706497 TTACATC--GAAGTAGATCAAAGAT-GACAG
62 ATAGA-CGGGAAGCAGATCAAAGATAG-CAG
*
10706525 ATTTGGCATCTCTGTATTAGACGGGGAGCAAATC-AGAGA-TAACAGATTTGGCATCTCTGTATT
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGA-AGATTAACAGATTTCGCATCTCTGTA-T
**
10706588 AGACGGGAAGCAGATTGAAGA-AGCAG
64 AGACGGGAAGCAGATCAAAGATAGCAG
** * *
10706614 ATTTGGCATCTCTGTATTAGGTGGGGAGCAGATCGAAGATTAACAGATTTCGCGTCTCTGTATAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATTAACAGATTTCGCATCTCTGTATAG
*
10706679 ACGGGGAGCAGATCAAAGATAGCAG
66 ACGGGAAGCAGATCAAAGATAGCAG
10706704 AT
1 AT
10706706 ATCGCCTTCC
Statistics
Matches: 154, Mismatches: 18, Indels: 20
0.80 0.09 0.10
Matches are distributed among these distances:
88 5 0.03
89 62 0.40
90 49 0.32
91 2 0.01
92 36 0.23
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (90 bp):
ATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATTAACAGATTTCGCATCTCTGTATAG
ACGGGAAGCAGATCAAAGATAGCAG
Found at i:10707075 original size:14 final size:15
Alignment explanation
Indices: 10707056--10707111 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
10707046 AATCTTCAAT
10707056 GATATG-CAATCTTA
1 GATATGACAATCTTA
10707070 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
10707087 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
10707105 GATATGA
1 GATATGA
10707112 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:10707100 original size:35 final size:37
Alignment explanation
Indices: 10707054--10707132 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
10707044 ATAATCTTCA
10707054 ATGATATGCAATCTTAGATATGATA-CAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
10707090 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA-
1 ATGATATGCAATCTTAGATATGATA-GCAATCTTAGAT
10707126 A-GATATG
1 ATGATATG
10707133 ATTTTGTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
Found at i:10707132 original size:17 final size:19
Alignment explanation
Indices: 10707054--10707125 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
10707044 ATAATCTTCA
10707054 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
10707073 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
10707090 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
10707108 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
10707126 AGATATGATT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:10707151 original size:22 final size:22
Alignment explanation
Indices: 10707054--10707148 Score: 79
Period size: 17 Copynumber: 4.8 Consensus size: 22
10707044 ATAATCTTCA
10707054 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
10707073 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
10707090 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
10707108 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
10707130 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
10707149 GATTTAATTT
Statistics
Matches: 67, Mismatches: 2, Indels: 10
0.85 0.03 0.13
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 15 0.22
22 8 0.12
23 12 0.18
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:10707439 original size:19 final size:18
Alignment explanation
Indices: 10707415--10707450 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
10707405 TGTTTCCCTG
*
10707415 ATTTTTTTATATATTTTAA
1 ATTTTTTAATA-ATTTTAA
10707434 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
10707451 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
ATTTTTTAATAATTTTAA
Found at i:10720557 original size:48 final size:47
Alignment explanation
Indices: 10720468--10720833 Score: 205
Period size: 49 Copynumber: 7.7 Consensus size: 47
10720458 GATGTATGCT
* * * **
10720468 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCA-CATTATGAGAGCC
1 AGTGTAAGACCTGTCTAGGACATGGCATCGG-CATTAAGATGAGAGCC
* *
10720514 AGTGTAAGACCATGTTTAGGACATGGCATCGGCATTAAGATGAGAGCT
1 AGTGTAAGACC-TGTCTAGGACATGGCATCGGCATTAAGATGAGAGCC
* * ** *
10720562 AGTGTAAGACATGTCTAGGACAT-GCATCGGCCTCGAGAT-ATGCAAGCT
1 AGTGTAAGACCTGTCTAGGACATGGCATCGGCATTAAGATGA-G--AGCC
* * * * * *
10720610 AGTGTAAAACCTGTCTGGGACATGGCATCAGG--TTGACAT--GTGTC
1 AGTGTAAGACCTGTCTAGGACATGGCATC-GGCATTAAGATGAGAGCC
* * * **
10720654 AGTGTAAGACCTGTCTGGGACATGACATCGACACCAATAGATGAGAGCC
1 AGTGTAAGACCTGTCTAGGACATGGCATCGGCA-TTA-AGATGAGAGCC
* * * * * * *
10720703 AGTTTAAGACTTGTCTAGGACATGGCATCGGCCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTAGGACATGGCATCGGCAT-TA-AGATGAGAGCC
* * * *
10720752 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-TT-AGATGTTTGATCC
1 AGTGTAAGACCTGTCTAGGACATGGCATCGGCATTAAGATG--AGAGCC
* *
10720799 AGTGTAAGACCATGT-TTGGAACATGGCATGGGCAT
1 AGTGTAAGACC-TGTCTAGG-ACATGGCATCGGCAT
10720834 CGTACCCTAT
Statistics
Matches: 247, Mismatches: 53, Indels: 37
0.73 0.16 0.11
Matches are distributed among these distances:
43 1 0.00
44 28 0.11
45 5 0.02
46 25 0.10
47 42 0.17
48 70 0.28
49 74 0.30
50 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCTGTCTAGGACATGGCATCGGCATTAAGATGAGAGCC
Found at i:10727687 original size:48 final size:47
Alignment explanation
Indices: 10727513--10727774 Score: 209
Period size: 48 Copynumber: 5.6 Consensus size: 47
10727503 ATGGATGTGT
* *
10727513 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC---ACATTATGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGATCGGCCTTGACA-TATGA-A
* * * * * *
10727559 GCCAGTGTAAGAACATGTCTAGGACATGGCATCAGCATT-A-AGATGAGA
1 GCTAGTGTAAG-ACCTGTCTGGGACATGG-ATCGGCCTTGACATATGA-A
* * * *
10727607 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATGCAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGATCGGCCTTGACATATG-AA
* *
10727655 GCTAGTGTAAGACCTGTTTGGGACATGGATCGG-CTTGACATGTG--
1 GCTAGTGTAAGACCTGTCTGGGACATGGATCGGCCTTGACATATGAA
* * *
10727699 TC-AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTTGATAGATGAAA
1 GCTAGTGTAAGACCTGTCTGGGACATGG-ATCGGCCTTGACATATG-AA
** *
10727747 TTTAGTGTAAGACCTATCTGGGACATGG
1 GCTAGTGTAAGACCTGTCTGGGACATGG
10727775 CATTGACTTA
Statistics
Matches: 177, Mismatches: 26, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
43 24 0.14
44 6 0.03
45 8 0.05
46 16 0.09
47 39 0.22
48 57 0.32
49 26 0.15
50 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (47 bp):
GCTAGTGTAAGACCTGTCTGGGACATGGATCGGCCTTGACATATGAA
Found at i:10727790 original size:92 final size:93
Alignment explanation
Indices: 10727507--10727829 Score: 246
Period size: 92 Copynumber: 3.4 Consensus size: 93
10727497 GGTGTTATGG
* * ** * *
10727507 ATGTGTGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCAC-A-TTATGAGAGCCAGTGTAA
1 ATGTGTGC-AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGAGAGATGAAAGCTAGTGTAA
* * * * *
10727569 GAACATGTCTAGGACATGGCATC-AGCATTAAG
65 G-ACCTATCTGGGACATGG-ATCGA-C-TTGAC
* * * * *
10727601 ATGAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATATGCAAGCTAGTGTAA
1 ATGTGTGC-AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGAGAGATGAAAGCTAGTGTAA
* * *
10727665 GACCTGTTTGGGACATGGATCGGCTTGAC
65 GACCTATCTGGGACATGGATCGACTTGAC
* * **
10727694 ATGTGT-CAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTTGATAGATGAAATTTAGTGTAAG
1 ATGTGTGCAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGAGAGATGAAAGCTAGTGTAAG
* *
10727758 ACCTATCTGGGACATGGCATTGACTT-AG
66 ACCTATCTGGGACATGG-ATCGACTTGAC
* * *
10727786 ATGTGTGAGCCAGTGCAAGACCATGTTTGGAACATGGCATCGGC
1 ATGTGT--G-CAGTGTAAGACC-TGTCTGGGACATGGCATCGGC
10727830 ATCATACCCT
Statistics
Matches: 189, Mismatches: 30, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
91 22 0.12
92 50 0.26
93 13 0.07
94 44 0.23
95 15 0.08
96 26 0.14
97 19 0.10
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (93 bp):
ATGTGTGCAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGAGAGATGAAAGCTAGTGTAAG
ACCTATCTGGGACATGGATCGACTTGAC
Found at i:10727813 original size:140 final size:140
Alignment explanation
Indices: 10727561--10727829 Score: 312
Period size: 140 Copynumber: 1.9 Consensus size: 140
10727551 TTATGAGAGC
* *
10727561 CAGTGTAAGAACATGTCTAGGACATGGCATCAGCATTAAGATGAGAGCTAGTGTAAGACATGTCT
1 CAGTGTAAGAACATGTCTAGGACATGGCATCAGCATTAAGATGAAAGCTAGTGTAAGACATATCT
* * * *
10727626 GGGACATGCATCGGCCTCGAGATATGCAAGCTAGTGTAAGACCTGTTTGGGACATGG-ATCGGCT
66 GGGACATGCATCGGACTCGAGATATGCAAGCCAGTGCAAGACCTGTTTGGAACATGGCATCGGCT
10727690 TGACATGTGT
131 TGACATGTGT
* * * * ** *
10727700 CAGTGTAAG-ACCTGTCTGGGACATGGCATCGGCCTTGATAGATGAAATTTAGTGTAAGACCTAT
1 CAGTGTAAGAACATGTCTAGGACATGGCATCAGCATT-A-AGATGAAAGCTAGTGTAAGACATAT
* * * **
10727764 CTGGGACATGGCAT-TGACT-TAGATGTGTGAGCCAGTGCAAGACCATGTTTGGAACATGGCATC
64 CTGGGACAT-GCATCGGACTCGAGATATGCAAGCCAGTGCAAGACC-TGTTTGGAACATGGCATC
10727827 GGC
127 GGC
10727830 ATCATACCCT
Statistics
Matches: 107, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
138 23 0.21
139 29 0.27
140 45 0.42
141 10 0.09
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (140 bp):
CAGTGTAAGAACATGTCTAGGACATGGCATCAGCATTAAGATGAAAGCTAGTGTAAGACATATCT
GGGACATGCATCGGACTCGAGATATGCAAGCCAGTGCAAGACCTGTTTGGAACATGGCATCGGCT
TGACATGTGT
Found at i:10773066 original size:25 final size:25
Alignment explanation
Indices: 10773038--10773118 Score: 92
Period size: 25 Copynumber: 3.2 Consensus size: 25
10773028 TCTGCTCATT
*
10773038 CGAGCTATGAATCGGTATGCTCTTA
1 CGAGCTATGAATCGGTAAGCTCTTA
* *
10773063 CGAGCTATGAATCGATAAGCTCATA
1 CGAGCTATGAATCGGTAAGCTCTTA
* * *
10773088 CGAGTTGA-GAATTGGTAAGCTCTCA
1 CGAGCT-ATGAATCGGTAAGCTCTTA
10773113 CGAGCT
1 CGAGCT
10773119 GTAAGTCAGT
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
25 45 0.98
26 1 0.02
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (25 bp):
CGAGCTATGAATCGGTAAGCTCTTA
Found at i:10773961 original size:10 final size:10
Alignment explanation
Indices: 10773937--10773971 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
10773927 CATGGCTAGG
*
10773937 TTTTATTTTT
1 TTTTCTTTTT
10773947 CTTTTCTTTTT
1 -TTTTCTTTTT
10773958 TTTTCTTTTT
1 TTTTCTTTTT
10773968 TTTT
1 TTTT
10773972 TTGTGGAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.03, C:0.09, G:0.00, T:0.89
Consensus pattern (10 bp):
TTTTCTTTTT
Found at i:10773962 original size:15 final size:14
Alignment explanation
Indices: 10773937--10773973 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 14
10773927 CATGGCTAGG
*
10773937 TTTTATTTTTCTTT
1 TTTTTTTTTTCTTT
10773951 TCTTTTTTTTTCTTT
1 T-TTTTTTTTTCTTT
10773966 TTTTTTTT
1 TTTTTTTT
10773974 GTGGAAGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.03, C:0.08, G:0.00, T:0.89
Consensus pattern (14 bp):
TTTTTTTTTTCTTT
Found at i:10778892 original size:38 final size:38
Alignment explanation
Indices: 10778848--10778921 Score: 130
Period size: 38 Copynumber: 1.9 Consensus size: 38
10778838 AAATGTGAAT
10778848 TTAGTAATATGATAGAAAGGGCATCCTTATCAATTTAA
1 TTAGTAATATGATAGAAAGGGCATCCTTATCAATTTAA
* *
10778886 TTAGTAATATGATTGAAAGGGCATTCTTATCAATTT
1 TTAGTAATATGATAGAAAGGGCATCCTTATCAATTT
10778922 TTTTTTTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.38
Consensus pattern (38 bp):
TTAGTAATATGATAGAAAGGGCATCCTTATCAATTTAA
Found at i:10779690 original size:14 final size:15
Alignment explanation
Indices: 10779673--10779714 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
10779663 AAAGTTTAGG
10779673 GTTAGGGTTTTAA-A
1 GTTAGGGTTTTAAGA
* *
10779687 GTTA-GGATTTAAGG
1 GTTAGGGTTTTAAGA
10779701 GTTAGGGTTTTAAG
1 GTTAGGGTTTTAAG
10779715 TTGATTACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
13 7 0.30
14 8 0.35
15 8 0.35
ACGTcount: A:0.26, C:0.00, G:0.33, T:0.40
Consensus pattern (15 bp):
GTTAGGGTTTTAAGA
Found at i:10780025 original size:32 final size:32
Alignment explanation
Indices: 10779979--10780090 Score: 156
Period size: 32 Copynumber: 3.5 Consensus size: 32
10779969 CGCATGGTTC
10779979 TGTGAAATGATAACAAATATCAACTTTCATTT
1 TGTGAAATGATAACAAATATCAACTTTCATTT
*
10780011 TGTGAAATGGTAACAAAT-TACAAC-TTCAATTT
1 TGTGAAATGATAACAAATAT-CAACTTTC-ATTT
* *
10780043 TGTGAAATAATAACAAATATCAACTTTAATTT
1 TGTGAAATGATAACAAATATCAACTTTCATTT
*
10780075 TGTTAAATGATAACAA
1 TGTGAAATGATAACAA
10780091 TATTCCTCTA
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
31 4 0.06
32 63 0.90
33 3 0.04
ACGTcount: A:0.44, C:0.11, G:0.10, T:0.36
Consensus pattern (32 bp):
TGTGAAATGATAACAAATATCAACTTTCATTT
Found at i:10782569 original size:44 final size:44
Alignment explanation
Indices: 10782521--10782610 Score: 171
Period size: 44 Copynumber: 2.0 Consensus size: 44
10782511 ACAGCTATTT
10782521 AAAATAGTCGTTGGAAAAGTATCCATTGAGGGGAAAACACTTCC
1 AAAATAGTCGTTGGAAAAGTATCCATTGAGGGGAAAACACTTCC
*
10782565 AAAATAGTCGTTGGAAAAGTATCCATTGAGGGGAAAACGCTTCC
1 AAAATAGTCGTTGGAAAAGTATCCATTGAGGGGAAAACACTTCC
10782609 AA
1 AA
10782611 CTAGAAGTGT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.22
Consensus pattern (44 bp):
AAAATAGTCGTTGGAAAAGTATCCATTGAGGGGAAAACACTTCC
Found at i:10782766 original size:29 final size:30
Alignment explanation
Indices: 10782734--10782790 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
10782724 TAAATATTTC
10782734 AAAAATCAGC-TTATTCTAGTAATTTAAAA
1 AAAAATCAGCATTATTCTAGTAATTTAAAA
* *
10782763 AAAAATCAGCATTTTTTTAGTAATTTAA
1 AAAAATCAGCATTATTCTAGTAATTTAA
10782791 TCAGAAGTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 10 0.40
30 15 0.60
ACGTcount: A:0.46, C:0.09, G:0.07, T:0.39
Consensus pattern (30 bp):
AAAAATCAGCATTATTCTAGTAATTTAAAA
Found at i:10786567 original size:18 final size:18
Alignment explanation
Indices: 10786541--10786575 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
10786531 AGTGTAAAAC
*
10786541 TTGTTGAGTAGAATTAAG
1 TTGTGGAGTAGAATTAAG
10786559 TTGTGGAGTAGAATTAA
1 TTGTGGAGTAGAATTAA
10786576 CAATGAACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.29, T:0.37
Consensus pattern (18 bp):
TTGTGGAGTAGAATTAAG
Found at i:10791478 original size:17 final size:17
Alignment explanation
Indices: 10791456--10791490 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
10791446 GCCATGGGTT
*
10791456 AGACGTGTTAAAGACCA
1 AGACGTGCTAAAGACCA
10791473 AGACGTGCTAAAGACCA
1 AGACGTGCTAAAGACCA
10791490 A
1 A
10791491 CTATCCCTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.43, C:0.20, G:0.23, T:0.14
Consensus pattern (17 bp):
AGACGTGCTAAAGACCA
Found at i:10791929 original size:13 final size:13
Alignment explanation
Indices: 10791908--10791971 Score: 94
Period size: 13 Copynumber: 4.9 Consensus size: 13
10791898 AGTTTGGCAA
10791908 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
10791921 TGATTTTGAAAAG
1 TGCTTTTGAAAAG
*
10791934 TGC-TGTGAAAAGG
1 TGCTTTTGAAAA-G
10791947 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
10791960 TGCTTTTGAAAA
1 TGCTTTTGAAAA
10791972 ATGTAAGTGT
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
12 7 0.16
13 31 0.69
14 7 0.16
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:10792150 original size:8 final size:9
Alignment explanation
Indices: 10792132--10792179 Score: 50
Period size: 8 Copynumber: 5.6 Consensus size: 9
10792122 TATTATAACT
10792132 TATTATTAA
1 TATTATTAA
10792141 TATT-TTAATA
1 TATTATT-A-A
10792151 TATTATTAA
1 TATTATTAA
10792160 TATT-TTAA
1 TATTATTAA
10792168 TA-TA-TAA
1 TATTATTAA
10792175 TATTA
1 TATTA
10792180 ATTTTAAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
7 6 0.18
8 10 0.29
9 10 0.29
10 6 0.18
11 2 0.06
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
TATTATTAA
Found at i:10792178 original size:21 final size:19
Alignment explanation
Indices: 10792132--10792190 Score: 84
Period size: 19 Copynumber: 3.1 Consensus size: 19
10792122 TATTATAACT
10792132 TATTATTAATATTTTAATA
1 TATTATTAATATTTTAATA
10792151 TATTATTAATATTTTAATA
1 TATTATTAATATTTTAATA
*
10792170 TATAATATTAAT-TTTAAATA
1 TAT--TATTAATATTTTAATA
10792190 T
1 T
10792191 TTCTAAGTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
19 22 0.59
20 8 0.22
21 7 0.19
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
TATTATTAATATTTTAATA
Found at i:10792593 original size:12 final size:12
Alignment explanation
Indices: 10792576--10792601 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
10792566 ATTGCTTGAT
10792576 TCACCATCATCA
1 TCACCATCATCA
10792588 TCACCATCATCA
1 TCACCATCATCA
10792600 TC
1 TC
10792602 GTCGTCGTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.42, G:0.00, T:0.27
Consensus pattern (12 bp):
TCACCATCATCA
Found at i:10794277 original size:72 final size:72
Alignment explanation
Indices: 10794014--10794247 Score: 348
Period size: 72 Copynumber: 3.3 Consensus size: 72
10794004 AAAATCATAT
**
10794014 ATAAACAACTATTGATAAAACTA-ATTTA-GTATAAATAAGTAGAACATAAA-TCAATATCCAAA
1 ATAAACAACTATTGATAAAACTAGA-TTACACATAAATAAGTAGAACATAAATTCAATATCCAAA
*
10794076 TACCAAAC
65 AACCAAAC
* * *
10794084 ATAAACAACTTTTAATAAAACTAGATTACACATAAGTAAGTAGAACATAAATTCAATATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
10794149 ACCAAAC
66 ACCAAAC
* *
10794156 ATAAACAACCATTGGTAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
*
10794221 ATCAAAC
66 ACCAAAC
*
10794228 ATAAATAACTATTGATAAAA
1 ATAAACAACTATTGATAAAA
10794248 TTAGTTTAAC
Statistics
Matches: 146, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
70 24 0.16
71 20 0.14
72 102 0.70
ACGTcount: A:0.55, C:0.15, G:0.06, T:0.24
Consensus pattern (72 bp):
ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
ACCAAAC
Found at i:10794701 original size:18 final size:18
Alignment explanation
Indices: 10794680--10794727 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
10794670 TCCATCAATT
*
10794680 TGAACATCATTTGAAATG
1 TGAACATCATTTAAAATG
10794698 TGAACATCATTTAAAATG
1 TGAACATCATTTAAAATG
10794716 TGAACATCATTT
1 TGAACATCATTT
10794728 CTCACATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.35
Consensus pattern (18 bp):
TGAACATCATTTAAAATG
Found at i:10795684 original size:21 final size:21
Alignment explanation
Indices: 10795658--10795748 Score: 103
Period size: 21 Copynumber: 4.3 Consensus size: 21
10795648 AGATAATATA
10795658 TATAAATATATATGGTCATAG
1 TATAAATATATATGGTCATAG
* **
10795679 TATAAAAATATTACAGTCAATA-
1 TATAAATATA-TATGGTC-ATAG
*
10795701 TGTAAATATATATGGTCATAG
1 TATAAATATATATGGTCATAG
*
10795722 TGTAAATATATATGGTCATAG
1 TATAAATATATATGGTCATAG
*
10795743 TCTAAA
1 TATAAA
10795749 CCAATGGAGA
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
20 3 0.05
21 40 0.68
22 13 0.22
23 3 0.05
ACGTcount: A:0.44, C:0.07, G:0.13, T:0.36
Consensus pattern (21 bp):
TATAAATATATATGGTCATAG
Found at i:10801130 original size:26 final size:26
Alignment explanation
Indices: 10801101--10801208 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
10801091 TGGTACAAAT
10801101 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
10801127 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
10801153 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
10801179 TAATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
10801205 TGAT
1 TGAT
10801209 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:10808160 original size:26 final size:26
Alignment explanation
Indices: 10808131--10808290 Score: 241
Period size: 26 Copynumber: 6.2 Consensus size: 26
10808121 TGGTACAAAT
*
10808131 TGATAAT-GAGTTAGGTAAATGTTTCA
1 TGATAATGGA-TTAGGTAAATGTTCCA
*
10808157 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
* *
10808183 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGATTAGGTAAATGTTCCA
*
10808209 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
10808235 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
10808261 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
10808287 TGAT
1 TGAT
10808291 GGGCATTTTA
Statistics
Matches: 122, Mismatches: 11, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
26 120 0.98
27 2 0.02
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:10808196 original size:52 final size:52
Alignment explanation
Indices: 10808131--10808290 Score: 268
Period size: 52 Copynumber: 3.1 Consensus size: 52
10808121 TGGTACAAAT
*
10808131 TGATAATGAGTTAGGTAAATGTTTCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTTCATGATAATGGATTAGGTAAATATTCCA
10808183 TGATAATGGGTTAGGTAAATG-TTCTATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTTC-ATGATAATGGATTAGGTAAATATTCCA
* * *
10808235 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCATGATAATGGATTAGGTAAATATTCCA
10808287 TGAT
1 TGAT
10808291 GGGCATTTTA
Statistics
Matches: 102, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
51 3 0.03
52 97 0.95
53 2 0.02
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTTCATGATAATGGATTAGGTAAATATTCCA
Found at i:10811157 original size:26 final size:25
Alignment explanation
Indices: 10811114--10811162 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
10811104 ATATAATATT
*
10811114 TAATAAATATAAAAAAACAAATGAA
1 TAATAAAAATAAAAAAACAAATGAA
*
10811139 TAATAAGAAATAAAGAAACAAATG
1 TAATAA-AAATAAAAAAACAAATG
10811163 CAAACTTTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.29
26 15 0.71
ACGTcount: A:0.69, C:0.04, G:0.08, T:0.18
Consensus pattern (25 bp):
TAATAAAAATAAAAAAACAAATGAA
Found at i:10812122 original size:19 final size:20
Alignment explanation
Indices: 10812078--10812128 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
10812068 ATTAATTATT
* *
10812078 TATAAAATTTAATTTGAATA
1 TATAAAATATAATTTAAATA
*
10812098 TATAAAATATATTTTAAATA
1 TATAAAATATAATTTAAATA
10812118 T-TAAAATATAA
1 TATAAAATATAA
10812129 CCAATAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 9 0.33
20 18 0.67
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (20 bp):
TATAAAATATAATTTAAATA
Found at i:10815572 original size:37 final size:37
Alignment explanation
Indices: 10815445--10815573 Score: 116
Period size: 37 Copynumber: 3.5 Consensus size: 37
10815435 CTTGGAAGAC
* * * *
10815445 AAAAGACAAAGATGAATAGAAGTAATTCCCTACAAAG
1 AAAAGACAGAGATGAACAGAAGTGATTCTCTACAAAG
** * * * * *
10815482 AAAAGATGGAGATAAATAGTAA-AGATCCTCTACGAAG
1 AAAAGACAGAGATGAACAG-AAGTGATTCTCTACAAAG
* **
10815519 AAAAAATGGAGATGAACAGAAGTGATTCTCTACAAAG
1 AAAAGACAGAGATGAACAGAAGTGATTCTCTACAAAG
10815556 AAAAGACAGAGATGAACA
1 AAAAGACAGAGATGAACA
10815574 AGAACAATTC
Statistics
Matches: 72, Mismatches: 18, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
36 2 0.03
37 68 0.94
38 2 0.03
ACGTcount: A:0.52, C:0.12, G:0.20, T:0.16
Consensus pattern (37 bp):
AAAAGACAGAGATGAACAGAAGTGATTCTCTACAAAG
Found at i:10815587 original size:74 final size:74
Alignment explanation
Indices: 10815454--10815598 Score: 170
Period size: 74 Copynumber: 2.0 Consensus size: 74
10815444 CAAAAGACAA
* ** * *
10815454 AGATGAATAGAAGTAATTCCCTACAAAGAAAAGATGGAGATAAATAGTAAAGATCCTCTACGAAG
1 AGATGAACAGAAGTAATTCCCTACAAAGAAAAGACAGAGATAAATAGTAAAGATCCTCTACCAAA
10815519 AAAAAATGG
66 AAAAAATGG
* * *
10815528 AGATGAACAGAAGTGATTCTCTACAAAGAAAAGACAGAGATGAACA-AG-AACA-ATTCTCTACC
1 AGATGAACAGAAGTAATTCCCTACAAAGAAAAGACAGAGAT-AA-ATAGTAA-AGATCCTCTACC
10815590 AAAAAAAAA
63 AAAAAAAAA
10815599 AAGAAAAAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
74 54 0.90
75 5 0.08
76 1 0.02
ACGTcount: A:0.52, C:0.13, G:0.18, T:0.17
Consensus pattern (74 bp):
AGATGAACAGAAGTAATTCCCTACAAAGAAAAGACAGAGATAAATAGTAAAGATCCTCTACCAAA
AAAAAATGG
Found at i:10816695 original size:16 final size:16
Alignment explanation
Indices: 10816674--10816707 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
10816664 TAAAGTAAAT
* *
10816674 AAAATAAGTAAAGTTA
1 AAAATAAGAAAACTTA
10816690 AAAATAAGAAAACTTA
1 AAAATAAGAAAACTTA
10816706 AA
1 AA
10816708 GAATTAGTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.68, C:0.03, G:0.09, T:0.21
Consensus pattern (16 bp):
AAAATAAGAAAACTTA
Found at i:10818376 original size:21 final size:19
Alignment explanation
Indices: 10818348--10818387 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
10818338 CGTCAAAGTT
10818348 TAAGTTTATCACAAACTTAC
1 TAAGTTTAT-ACAAACTTAC
*
10818368 TAAGCTTTATGCAAACTTAC
1 TAAG-TTTATACAAACTTAC
10818388 CTCGTTTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.38, C:0.20, G:0.07, T:0.35
Consensus pattern (19 bp):
TAAGTTTATACAAACTTAC
Found at i:10823943 original size:21 final size:22
Alignment explanation
Indices: 10823914--10823960 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
10823904 CAGAAGGAGT
*
10823914 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
10823936 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
10823957 GAGT
1 GAGT
10823961 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:10825117 original size:34 final size:37
Alignment explanation
Indices: 10825005--10825117 Score: 108
Period size: 37 Copynumber: 3.1 Consensus size: 37
10824995 AACAAGAGTA
* * *
10825005 ATTCTCTACAAAGAAAAGACGGAGATGAAC-ATGAACG
1 ATTCTCTGCAAAGAAAATACAGAGATGAACAAT-AACG
* * * **
10825042 ACTCTTTGCAAAGAAAATACAGAGATGAATAATAAAA
1 ATTCTCTGCAAAGAAAATACAGAGATGAACAATAACG
*
10825079 ATTCTCTGCATAGAAAA-A-A-AGATGAACAATAACG
1 ATTCTCTGCAAAGAAAATACAGAGATGAACAATAACG
10825113 ATTCT
1 ATTCT
10825118 ATTCAAAATT
Statistics
Matches: 61, Mismatches: 14, Indels: 5
0.76 0.17 0.06
Matches are distributed among these distances:
34 17 0.28
35 1 0.02
36 1 0.02
37 40 0.66
38 2 0.03
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.21
Consensus pattern (37 bp):
ATTCTCTGCAAAGAAAATACAGAGATGAACAATAACG
Found at i:10828077 original size:14 final size:14
Alignment explanation
Indices: 10828042--10828080 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
10828032 CACGTCTTAC
*
10828042 TATATATATATTAT
1 TATATATATATTAG
* *
10828056 TATGTATATTTTAG
1 TATATATATATTAG
10828070 TATATATATAT
1 TATATATATAT
10828081 ATTTATGAAG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (14 bp):
TATATATATATTAG
Found at i:10828147 original size:11 final size:11
Alignment explanation
Indices: 10828131--10828196 Score: 50
Period size: 11 Copynumber: 6.0 Consensus size: 11
10828121 TTATTTCTAA
10828131 TATGTATATAT
1 TATGTATATAT
*
10828142 TATGTAAATATT
1 TATGTATATA-T
10828154 CTAATGT-TATAT
1 -T-ATGTATATAT
*
10828166 TATATATATAT
1 TATGTATATAT
10828177 TCA--TA-ATAT
1 T-ATGTATATAT
10828186 TATGTATATAT
1 TATGTATATAT
10828197 GTTTTTAGTA
Statistics
Matches: 44, Mismatches: 3, Indels: 16
0.70 0.05 0.25
Matches are distributed among these distances:
8 1 0.02
9 5 0.11
10 7 0.16
11 20 0.45
12 3 0.07
13 4 0.09
14 4 0.09
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.52
Consensus pattern (11 bp):
TATGTATATAT
Found at i:10828176 original size:24 final size:25
Alignment explanation
Indices: 10828132--10828196 Score: 71
Period size: 24 Copynumber: 2.6 Consensus size: 25
10828122 TATTTCTAAT
* *
10828132 ATGTATATATTATGTAAATATTC-TA
1 ATGT-TATATTATATATATATTCATA
10828157 ATGTTATATTATATATATATTCATA
1 ATGTTATATTATATATATATTCATA
* *
10828182 ATATTAT-GTATATAT
1 ATGTTATATTATATAT
10828197 GTTTTTAGTA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
24 23 0.66
25 12 0.34
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.51
Consensus pattern (25 bp):
ATGTTATATTATATATATATTCATA
Found at i:10828275 original size:19 final size:17
Alignment explanation
Indices: 10828247--10828287 Score: 55
Period size: 19 Copynumber: 2.3 Consensus size: 17
10828237 TATATAGTAT
*
10828247 TTTTATTATTATTACTTTA
1 TTTTAGTATTATTA--TTA
10828266 TTTTAGTATTATTATTA
1 TTTTAGTATTATTATTA
10828283 TTTTA
1 TTTTA
10828288 TTTACTTATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.38
19 13 0.62
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.68
Consensus pattern (17 bp):
TTTTAGTATTATTATTA
Found at i:10828379 original size:42 final size:42
Alignment explanation
Indices: 10828332--10828414 Score: 166
Period size: 42 Copynumber: 2.0 Consensus size: 42
10828322 TGCATATATA
10828332 TATACGTATTCATATAATAGTATTTGTAATTACCTTATTTTG
1 TATACGTATTCATATAATAGTATTTGTAATTACCTTATTTTG
10828374 TATACGTATTCATATAATAGTATTTGTAATTACCTTATTTT
1 TATACGTATTCATATAATAGTATTTGTAATTACCTTATTTT
10828415 AACATTATTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.31, C:0.10, G:0.08, T:0.51
Consensus pattern (42 bp):
TATACGTATTCATATAATAGTATTTGTAATTACCTTATTTTG
Found at i:10828502 original size:3 final size:3
Alignment explanation
Indices: 10828488--10828528 Score: 73
Period size: 3 Copynumber: 13.3 Consensus size: 3
10828478 TTAACTTAAT
10828488 TTA TTGA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
10828529 CACTATTGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 34 0.92
4 3 0.08
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:10828822 original size:24 final size:23
Alignment explanation
Indices: 10828766--10828825 Score: 66
Period size: 26 Copynumber: 2.4 Consensus size: 23
10828756 TACATGCATA
* *
10828766 TATATATTATGTGTATATTCTTT
1 TATATATTATGTATATATTATTT
10828789 TCATAGATATTATGTATATATATATTT
1 T-AT--ATATTATGTATATAT-TATTT
10828816 TATATATTAT
1 TATATATTAT
10828826 TTTTAACTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
23 1 0.03
24 9 0.29
26 16 0.52
27 5 0.16
ACGTcount: A:0.33, C:0.03, G:0.07, T:0.57
Consensus pattern (23 bp):
TATATATTATGTATATATTATTT
Found at i:10830777 original size:37 final size:37
Alignment explanation
Indices: 10830743--10830822 Score: 126
Period size: 37 Copynumber: 2.2 Consensus size: 37
10830733 ACTAAAGATC
*
10830743 GAGATGAACAAGAGTGATTCTCTA-AAATGAAAAGACA
1 GAGATGAACAAGAATGATTCTCTACAAA-GAAAAGACA
*
10830780 GAGATGAACATGAATGATTCTCTACAAAGAAAAGACA
1 GAGATGAACAAGAATGATTCTCTACAAAGAAAAGACA
10830817 GAGATG
1 GAGATG
10830823 GATAGTAGAG
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
37 37 0.93
38 3 0.08
ACGTcount: A:0.47, C:0.11, G:0.23, T:0.19
Consensus pattern (37 bp):
GAGATGAACAAGAATGATTCTCTACAAAGAAAAGACA
Found at i:10834352 original size:25 final size:25
Alignment explanation
Indices: 10834270--10834368 Score: 162
Period size: 26 Copynumber: 3.9 Consensus size: 25
10834260 TGAAATTCCC
10834270 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCT-AACCATT
10834296 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAA-CCATT
* *
10834322 ATCATGGAATATTTACCTAATCATT
1 ATCATGGAACATTTACCTAACCATT
10834347 ATCATGGAACATTTACCTAACC
1 ATCATGGAACATTTACCTAACC
10834369 CATAATCAAT
Statistics
Matches: 68, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
25 26 0.38
26 42 0.62
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.32
Consensus pattern (25 bp):
ATCATGGAACATTTACCTAACCATT
Found at i:10834361 original size:51 final size:52
Alignment explanation
Indices: 10834270--10834376 Score: 180
Period size: 51 Copynumber: 2.1 Consensus size: 52
10834260 TGAAATTCCC
*
10834270 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATA
* *
10834322 ATCATGGAATATTTACCT-AATCATTATCATGGAACATTTACCTAACCCATA
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATA
10834373 ATCA
1 ATCA
10834377 ATTTGTATCA
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
51 35 0.67
52 17 0.33
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.32
Consensus pattern (52 bp):
ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATA
Found at i:10839398 original size:11 final size:11
Alignment explanation
Indices: 10839382--10839407 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
10839372 GTAAGGAAAA
10839382 CCCATTCAAAG
1 CCCATTCAAAG
10839393 CCCATTCAAAG
1 CCCATTCAAAG
10839404 CCCA
1 CCCA
10839408 AGTCAGCTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.42, G:0.08, T:0.15
Consensus pattern (11 bp):
CCCATTCAAAG
Found at i:10841383 original size:26 final size:26
Alignment explanation
Indices: 10841352--10841459 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
10841342 TGAAATTCCC
*
10841352 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
10841378 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
10841404 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
10841430 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
10841456 ATCA
1 ATCA
10841460 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:10842895 original size:10 final size:10
Alignment explanation
Indices: 10842868--10842897 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
10842858 AGCTAATCCA
*
10842868 TAACTACCAC
1 TAACTACTAC
10842878 TAACTACTAC
1 TAACTACTAC
10842888 TAACTACTAC
1 TAACTACTAC
10842898 CAATCTTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.40, C:0.33, G:0.00, T:0.27
Consensus pattern (10 bp):
TAACTACTAC
Found at i:10847398 original size:10 final size:10
Alignment explanation
Indices: 10847383--10847407 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
10847373 AGCTAATCCA
10847383 TAACTACCAC
1 TAACTACCAC
10847393 TAACTACCAC
1 TAACTACCAC
10847403 TAACT
1 TAACT
10847408 GCTACCAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.36, G:0.00, T:0.24
Consensus pattern (10 bp):
TAACTACCAC
Found at i:10848268 original size:19 final size:20
Alignment explanation
Indices: 10848216--10848270 Score: 53
Period size: 19 Copynumber: 2.8 Consensus size: 20
10848206 GAAATTTCTG
10848216 AAAATAACTTTAAAA-GAATA
1 AAAAT-ACTTTAAAATGAATA
* *
10848236 AAAATA-TGTAAAAATTAA-A
1 AAAATACT-TTAAAATGAATA
10848255 AAAATACTTTAAAATG
1 AAAATACTTTAAAATG
10848271 GGTTTTATTG
Statistics
Matches: 28, Mismatches: 4, Indels: 7
0.72 0.10 0.18
Matches are distributed among these distances:
18 1 0.04
19 19 0.68
20 8 0.29
ACGTcount: A:0.64, C:0.04, G:0.05, T:0.27
Consensus pattern (20 bp):
AAAATACTTTAAAATGAATA
Found at i:10853493 original size:3 final size:3
Alignment explanation
Indices: 10853485--10853538 Score: 90
Period size: 3 Copynumber: 18.0 Consensus size: 3
10853475 GTATATACAT
* *
10853485 ATA ATA ATA ATG ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
10853533 ATA ATA
1 ATA ATA
10853539 TGAAAATACA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:10854720 original size:17 final size:17
Alignment explanation
Indices: 10854698--10854731 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
10854688 GACGGGTTAT
10854698 TGGGTTGTTTGGTTTAG
1 TGGGTTGTTTGGTTTAG
10854715 TGGGTTGTTTGGTTTAG
1 TGGGTTGTTTGGTTTAG
10854732 GGCCCAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.06, C:0.00, G:0.41, T:0.53
Consensus pattern (17 bp):
TGGGTTGTTTGGTTTAG
Found at i:10857451 original size:12 final size:12
Alignment explanation
Indices: 10857434--10857458 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10857424 TTGGGAATTT
10857434 TTCCAAAAGAAA
1 TTCCAAAAGAAA
10857446 TTCCAAAAGAAA
1 TTCCAAAAGAAA
10857458 T
1 T
10857459 ATATTGGCGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.16, G:0.08, T:0.20
Consensus pattern (12 bp):
TTCCAAAAGAAA
Found at i:10863613 original size:24 final size:23
Alignment explanation
Indices: 10863573--10863617 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
10863563 TCACATAAAC
10863573 TCATAATTCAACTCAATTCAATTT
1 TCATAATTCAACTCAA-TCAATTT
*
10863597 TCATATTTCAA-TACAATCAAT
1 TCATAATTCAACT-CAATCAAT
10863618 ATCCAATATC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (23 bp):
TCATAATTCAACTCAATCAATTT
Found at i:10864069 original size:23 final size:24
Alignment explanation
Indices: 10864025--10864077 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 24
10864015 AAGTAAATAC
* * *
10864025 ATATATGTATTACAGATGTACA-T
1 ATATATTTATTACACATATACACT
10864048 ATATATTTATTACACATATACACT
1 ATATATTTATTACACATATACACT
10864072 AT-TATT
1 ATATATT
10864078 ACCACACAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 23 0.88
24 3 0.12
ACGTcount: A:0.40, C:0.11, G:0.06, T:0.43
Consensus pattern (24 bp):
ATATATTTATTACACATATACACT
Done.