Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 360 of 362
Found at i:118952769 original size:43 final size:44
Alignment explanation
Indices: 118952661--118952992 Score: 229
Period size: 43 Copynumber: 7.6 Consensus size: 44
118952651 TCACATCAGG
* * * *
118952661 TCTTATCTCCCTG-AGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAG-ATAT-AGA
* *
118952707 TCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATATA-A
1 TCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGATATAGA
* * * * *
118952750 TCCTATCTCCCTGAAGTTACAGTGGAGCGGAT-TAAAATAAAGGA
1 TCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGATATA-GA
* * * * * *
118952794 TCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG--CAT-CAGG
1 TCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGATATAGA
* * * * *
118952835 TCTTATCTCTCTGAGGTTACAGTAGAGTAGACCGAAGA-ATTGCAGA
1 TCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGATA-T--AGA
* ** *
118952881 TCTTATC-CCCTGAAGTTACAGTGGA-CAGATTGAAGCCAGAGA
1 TCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGATATAGA
* * *
118952923 TCTTATCTCCCCG-AGATTACAGCGGAGCAGATCGAAGACACT--A
1 TCTTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGATA-TAGA
*
118952966 TCCTATCTCCCTGAAGTTACAGTGGAG
1 TCTTATCTCCCTGAAGTTACAGTGGAG
118952993 TGGGTTAAAA
Statistics
Matches: 227, Mismatches: 43, Indels: 35
0.74 0.14 0.11
Matches are distributed among these distances:
41 33 0.15
42 19 0.08
43 67 0.30
44 49 0.22
45 19 0.08
46 39 0.17
47 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.26
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGATATAGA
Found at i:118952809 original size:44 final size:44
Alignment explanation
Indices: 118952613--118953031 Score: 218
Period size: 43 Copynumber: 9.6 Consensus size: 44
118952603 TGGAGCGGAT
* * * *
118952613 TAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATC--ACA
1 TAAA-GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAAA
* * * * *
118952656 T-CAGGTCTTATCTCCCTG-AGATTACAGTGGAACAGACCAAAGAA
1 TAAAGATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAA-AA
** * * *
118952700 TTTCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGA
1 -TAAAGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAAA
* * * *
118952745 TATA-ATCCTATCTCCCTGAAGTTACAGTGGAGCGGAT-TAAAA
1 TAAAGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAAA
* * * *
118952787 TAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG--CA
1 TAAA-GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAAA
* * * * * * *
118952830 T-CAGGTCTTATCTCTCTGAGGTTACAGTAGAGTAGACCGAAGAA
1 TAAAGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAA-AA
** * **
118952874 TTGCAGATCTTATC-CCCTGAAGTTACAGTGGA-CAGATTGAAGC
1 -TAAAGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAAA
* * * * *
118952917 CAGAGATCTTATCTCCCCG-AGATTACAGCGGAGCAGATCGAAGA
1 TAAAGATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAAA
* ** * ** * *
118952961 -CACTATCCTATCTCCCTGAAGTTACAGTGGAGTGGGT-TAAAA
1 TAAAGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAAA
* *
118953003 TAAAGGATCTTATCTCTCTGAGGTTACAG
1 TAAA-GATCTTATCTCCCTGAAGTTACAG
118953032 CAGAGTAGGT
Statistics
Matches: 285, Mismatches: 70, Indels: 41
0.72 0.18 0.10
Matches are distributed among these distances:
40 2 0.01
41 59 0.21
42 23 0.08
43 71 0.25
44 69 0.24
45 18 0.06
46 42 0.15
47 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (44 bp):
TAAAGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAAA
Found at i:118952834 original size:174 final size:170
Alignment explanation
Indices: 118952534--118952943 Score: 542
Period size: 174 Copynumber: 2.4 Consensus size: 170
118952524 TTGAAGCCAG
* * *
118952534 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATT
1 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATAGTAATCCTATCTCCCTGAGATT
118952599 ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCT
66 ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCT
* *
118952664 TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTC
131 TATCTCCCTGAGATTACAGTAGAACAGACCAAAGAATTGC
118952704 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATA-TAATCCTATCTCCCTGA-AGT
1 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATAGTAATCCTATCTCCCTGAGA-T
* * *
118952767 TACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC
65 TACAATGGAGCGGA-T----TAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATC
* * ** *
118952832 AGGTCTTATCTCTCTGAGGTTACAGTAGAGTAGACCGAAGAATTGC
125 AGGTCTTATCTCCCTGAGATTACAGTAGAACAGACCAAAGAATTGC
* * * ** * *
118952878 AGATCTTATC-CCCTGAAGTTACAGTGGA-CAGATTGAAGCCAG-AGATCTTATCTCCCCGAGAT
1 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATAGTA-ATCCTATCTCCCTGAGAT
118952940 TACA
65 TACA
118952944 GCGGAGCAGA
Statistics
Matches: 211, Mismatches: 20, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
168 1 0.00
169 30 0.14
170 42 0.20
172 11 0.05
173 34 0.16
174 93 0.44
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.27
Consensus pattern (170 bp):
AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATAGTAATCCTATCTCCCTGAGATT
ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCT
TATCTCCCTGAGATTACAGTAGAACAGACCAAAGAATTGC
Found at i:118952883 original size:87 final size:87
Alignment explanation
Indices: 118952618--118952988 Score: 276
Period size: 87 Copynumber: 4.3 Consensus size: 87
118952608 CGGATTAAAG
* * *
118952618 GATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCTTATCTCCCTGAGATTACAG
1 GATCTTATCTCCCTGAAGTTACAGTAGAGAAGATCGCATCAGGTCTTATCTCCCTGAGGTTACAG
* *
118952683 TGGAACAGACCAAAGAATTTCA
66 TGGAGCAGACCAAAGAATTACA
* ** * * ** * *
118952705 GATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGAT-ATAATCCTATCTCCCTGAAGTTA
1 GATCTTATCTCCCTGAAGTTACAGTAGAGAAGATCG--CATCA-GGTCTTATCTCCCTGAGGTTA
* ** *
118952769 CAGTGGAGCGGA-TTAA-AA-TAAA
63 CAGTGGAGCAGACCAAAGAATTACA
* * *
118952791 GGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCTCTGAGGTTACA
1 -GATCTTATCTCCCTGAAGTTACAGTAGAGAAGATCGCATCAGGTCTTATCTCCCTGAGGTTACA
* * * *
118952856 GTAGAGTAGACCGAAGAATTGCA
65 GTGGAGCAGACCAAAGAATTACA
* * * * *
118952879 GATCTTATC-CCCTGAAGTTACAGT-G-GACAGATTGAAGCCAGAGATCTTATCTCCCCGAGATT
1 GATCTTATCTCCCTGAAGTTACAGTAGAGA-AGATCGCA-TCAG-G-TCTTATCTCCCTGAGGTT
* * * *
118952941 ACAGCGGAGCAGATCGAAG-A-CAC-
62 ACAGTGGAGCAGACCAAAGAATTACA
* *
118952964 TATCCTATCTCCCTGAAGTTACAGT
1 GATCTTATCTCCCTGAAGTTACAGT
118952989 GGAGTGGGTT
Statistics
Matches: 219, Mismatches: 52, Indels: 27
0.73 0.17 0.09
Matches are distributed among these distances:
84 1 0.00
85 41 0.19
86 38 0.17
87 76 0.35
88 35 0.16
89 28 0.13
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (87 bp):
GATCTTATCTCCCTGAAGTTACAGTAGAGAAGATCGCATCAGGTCTTATCTCCCTGAGGTTACAG
TGGAGCAGACCAAAGAATTACA
Found at i:118953109 original size:216 final size:216
Alignment explanation
Indices: 118952704--118953113 Score: 563
Period size: 216 Copynumber: 1.9 Consensus size: 216
118952694 AAAGAATTTC
* * *
118952704 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATATAATCCTATCTCCCTGAAGTTA
1 AGATCTTATCTCCCCGAGATTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGTTA
* *
118952769 CAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
66 CAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAA
* * * * *** * * *
118952834 GTCTTATCTCTCTGAGGTTACAGTAGAGTAGACCGAAGAATTGCAGATCTTATCCCCTGAAGTTA
131 GTCTTATCTCCCTGAAGATACAGTAGAATAGACCGAAGAACCACAAACCTCATCCCCTGAAGTTA
118952899 CAGTGGACAGATTGAAGCCAG
196 CAGTGGACAGATTGAAGCCAG
118952920 AGATCTTATCTCCCCGAGATTACAGCGGAGCAGATCGAAGACACT-ATCCTATCTCCCTGAAGTT
1 AGATCTTATCTCCCCGAGATTACAGCGGAGCAGATCGAAGACA-TAATCCTATCTCCCTGAAGTT
* * * *
118952984 ACAGTGGAGTGGGTTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGCAGAGTAGGTCGCATCA
65 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCA
* * * ** *
118953049 AGTCTTATTTCCCTGAAGATGCAGTGGAATAGATTGAA-AACCACAAACCTCGTCCCCCTGAAGT
130 AGTCTTATCTCCCTGAAGATACAGTAGAATAGACCGAAGAACCACAAACCTCAT-CCCCTGAAGT
118953113 T
194 T
118953114 GCTACGAAGA
Statistics
Matches: 167, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
215 8 0.05
216 158 0.95
217 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.26
Consensus pattern (216 bp):
AGATCTTATCTCCCCGAGATTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGTTA
CAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAA
GTCTTATCTCCCTGAAGATACAGTAGAATAGACCGAAGAACCACAAACCTCATCCCCTGAAGTTA
CAGTGGACAGATTGAAGCCAG
Found at i:118954308 original size:19 final size:17
Alignment explanation
Indices: 118954286--118954348 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 17
118954276 ATTATCTTCT
118954286 TCATTATTTTAATGTATTA
1 TCATTATTTT-AT-TATTA
118954305 TCATTTATTATTATTATTA
1 TCA-TTATT-TTATTATTA
*
118954324 TTATTATTTCTATTATTA
1 TCATTATTT-TATTATTA
*
118954342 TTATTAT
1 TCATTAT
118954349 GTACATTACT
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
17 1 0.03
18 20 0.50
19 10 0.25
20 7 0.17
21 2 0.05
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (17 bp):
TCATTATTTTATTATTA
Found at i:118954317 original size:3 final size:3
Alignment explanation
Indices: 118954309--118954379 Score: 65
Period size: 3 Copynumber: 23.3 Consensus size: 3
118954299 GTATTATCAT
*
118954309 TTA TTA TTA TTA TTA TTA TTA TT- TCTA TTA TTA TTA TTA TGTA -CA
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA T-TA TTA
* * *
118954354 TTA CTG TTA CTTA TCA TTA TTA TTA T
1 TTA TTA TTA -TTA TTA TTA TTA TTA T
118954380 GTGATAGCTT
Statistics
Matches: 55, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
2 2 0.04
3 47 0.85
4 6 0.11
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:118954494 original size:26 final size:28
Alignment explanation
Indices: 118954464--118954522 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
118954454 CGAGTATACG
118954464 TATATA-TA-TATAGTTTC-TTTTATATT
1 TATATATTATTATA-TTTCATTTTATATT
* *
118954490 TATATATTATTTTATTTCATTTTATTTT
1 TATATATTATTATATTTCATTTTATATT
118954518 TATAT
1 TATAT
118954523 CTCACATGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 6 0.21
27 6 0.21
28 16 0.57
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.66
Consensus pattern (28 bp):
TATATATTATTATATTTCATTTTATATT
Found at i:118964263 original size:27 final size:28
Alignment explanation
Indices: 118964215--118964271 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
118964205 TTAATTTGAA
* * *
118964215 TATTTCATTTTTTTTATAAAAATTAATT
1 TATTTCAATTTTTTAATAAAAATAAATT
118964243 TATTTCAATTTTTTAAT-AAAATAAATT
1 TATTTCAATTTTTTAATAAAAATAAATT
118964270 TA
1 TA
118964272 ACAATTTCCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 11 0.42
28 15 0.58
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (28 bp):
TATTTCAATTTTTTAATAAAAATAAATT
Found at i:118968510 original size:23 final size:21
Alignment explanation
Indices: 118968483--118968525 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
118968473 ACATGATGTG
118968483 AAAT-AATA-ATACAAATATA
1 AAATGAATATATACAAATATA
*
118968502 AAATGAATATATATAAATATA
1 AAATGAATATATACAAATATA
118968523 AAA
1 AAA
118968526 ATTATAGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.19
20 4 0.19
21 13 0.62
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (21 bp):
AAATGAATATATACAAATATA
Found at i:118975775 original size:15 final size:15
Alignment explanation
Indices: 118975755--118975791 Score: 51
Period size: 13 Copynumber: 2.6 Consensus size: 15
118975745 TATTATGTAA
118975755 AAAATATATATAATT
1 AAAATATATATAATT
118975770 -AAA-ATATATAATT
1 AAAATATATATAATT
*
118975783 AAATTATAT
1 AAAATATAT
118975792 GTTGGACCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 4
0.79 0.04 0.17
Matches are distributed among these distances:
13 10 0.53
14 5 0.26
15 4 0.21
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
AAAATATATATAATT
Found at i:118975790 original size:11 final size:13
Alignment explanation
Indices: 118975760--118975791 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
118975750 TGTAAAAAAT
118975760 ATATATAATTAAA
1 ATATATAATTAAA
118975773 ATATATAATTAAA
1 ATATATAATTAAA
*
118975786 TTATAT
1 ATATAT
118975792 GTTGGACCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATATATAATTAAA
Found at i:118977379 original size:15 final size:15
Alignment explanation
Indices: 118977367--118977397 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
118977357 GCAATAAATG
118977367 TGGAAAAAATAAACA
1 TGGAAAAAATAAACA
118977382 TGGAAAAAATAAACA
1 TGGAAAAAATAAACA
118977397 T
1 T
118977398 AAGAACATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.65, C:0.06, G:0.13, T:0.16
Consensus pattern (15 bp):
TGGAAAAAATAAACA
Found at i:118981938 original size:142 final size:141
Alignment explanation
Indices: 118981597--118981918 Score: 398
Period size: 140 Copynumber: 2.3 Consensus size: 141
118981587 CGGGCAGTGA
* * *
118981597 ACTTGACCTGTTAAATGTTACCACTTTGAACCAACTTAGCTAAGTTCCAGTTTCGCTGCTACCTA
1 ACTTGACCTGTTAAATGTCACCACTTTGAACCAACTTAGCTAAGTTCCAGGTTCGCTGCTACCCA
* * * *
118981662 TATATAGATATGGATATCATAGACATGATATTACCTGTGCATCATCACTACTGCCCTTATTGTTT
66 TATATAGATATCGATATCATACACATGATATTACCTGTGCATCATCACCACTGCACTTATTGTTT
* **
118981727 TCGGGCTCTGG
131 TCCGGCTCCAG
* * * *
118981738 AC-TCACCTGTTAAATGTCACCTCTTTGAACCAACTTAGCTAAGTTCCACGTTCGCTGCTTCCCA
1 ACTTGACCTGTTAAATGTCACCACTTTGAACCAACTTAGCTAAGTTCCAGGTTCGCTGCTACCCA
* * * *
118981802 TATATAGATGA-CGATATCTTACACATGACTCTTATCTGTGCATCATCACCACTG-ATTGTATTG
66 TATATAGAT-ATCGATATCATACACATGA-TATTACCTGTGCATCATCACCACTGCACT-TATTG
118981865 TTTTCCGGCTCCAG
128 TTTTCCGGCTCCAG
* * * *
118981879 ACTTGACCTGTTACACGCCACCACTTTTAACCAACTTAGC
1 ACTTGACCTGTTAAATGTCACCACTTTGAACCAACTTAGC
118981919 AATGTTCTGG
Statistics
Matches: 153, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
140 79 0.52
141 43 0.28
142 31 0.20
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.34
Consensus pattern (141 bp):
ACTTGACCTGTTAAATGTCACCACTTTGAACCAACTTAGCTAAGTTCCAGGTTCGCTGCTACCCA
TATATAGATATCGATATCATACACATGATATTACCTGTGCATCATCACCACTGCACTTATTGTTT
TCCGGCTCCAG
Found at i:118984463 original size:117 final size:113
Alignment explanation
Indices: 118984333--118984564 Score: 313
Period size: 117 Copynumber: 2.0 Consensus size: 113
118984323 CTCAATATGA
* *
118984333 AAAAAAAAAACCAATCTAAATTGAATTATCATAAATAATTCAAAAAAATCCAATCT-AAGTAACC
1 AAAAAAAAAACCAATCTAAATCGAATTATCATAAATAATTC-AAAAAATCCAAT-TGAACTAACC
* * *
118984397 AAATTTAACCCAAACATATATATTAATATTGGTGAACATTCATTATTTAAAAT
64 AAATTT-ACCCAAAC--ATATATTAACATCGGTGAACAGTCATTATTTAAAAT
* *
118984450 AAAAAATAAACCAATCTAAATCGAATTGTCATAAATAATTCAAAAAATCCAATTGAACTAACCAA
1 AAAAAAAAAACCAATCTAAATCGAATTATCATAAATAATTCAAAAAATCCAATTGAACTAACCAA
* * * *
118984515 GTTTACCCAAGCGTATATTAACATCGGTGAACAGTCATTATTTAAGAT
66 ATTTACCCAAACATATATTAACATCGGTGAACAGTCATTATTTAAAAT
118984563 AA
1 AA
118984565 GGAAAGTTTT
Statistics
Matches: 103, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
113 33 0.32
115 8 0.08
116 24 0.23
117 38 0.37
ACGTcount: A:0.50, C:0.15, G:0.07, T:0.28
Consensus pattern (113 bp):
AAAAAAAAAACCAATCTAAATCGAATTATCATAAATAATTCAAAAAATCCAATTGAACTAACCAA
ATTTACCCAAACATATATTAACATCGGTGAACAGTCATTATTTAAAAT
Found at i:118990860 original size:18 final size:19
Alignment explanation
Indices: 118990820--118990860 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
118990810 TTATTAATTT
* *
118990820 AAATGTTAAATTTAAATTT
1 AAATGTTAAATTTAAAATA
118990839 AAAT-TTAAATTTAAAATA
1 AAATGTTAAATTTAAAATA
118990857 AAAT
1 AAAT
118990861 ATTTAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.41
Consensus pattern (19 bp):
AAATGTTAAATTTAAAATA
Found at i:118990872 original size:7 final size:6
Alignment explanation
Indices: 118990815--118990853 Score: 69
Period size: 6 Copynumber: 6.3 Consensus size: 6
118990805 CGTTATTATT
118990815 AATTTA AATGTTA AATTTA AATTTA AATTTA AATTTA AA
1 AATTTA AAT-TTA AATTTA AATTTA AATTTA AATTTA AA
118990854 ATAAAATATT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 26 0.81
7 6 0.19
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (6 bp):
AATTTA
Found at i:118990882 original size:13 final size:13
Alignment explanation
Indices: 118990811--118990883 Score: 71
Period size: 12 Copynumber: 5.7 Consensus size: 13
118990801 TTGACGTTAT
118990811 TATT-AATTTAAA
1 TATTAAATTTAAA
*
118990823 TGTTAAATTTAAA
1 TATTAAATTTAAA
118990836 T-TTAAATTTAAA
1 TATTAAATTTAAA
* *
118990848 T-TTAAAATAAAA
1 TATTAAATTTAAA
*
118990860 TATTTAAAATTTATA
1 TA-TT-AAATTTAAA
118990875 TATTAAATT
1 TATTAAATT
118990884 GTAGGCATGT
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
12 25 0.49
13 14 0.27
14 4 0.08
15 8 0.16
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (13 bp):
TATTAAATTTAAA
Found at i:118999503 original size:16 final size:16
Alignment explanation
Indices: 118999481--118999535 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
118999471 GTTTGGTTCA
*
118999481 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
* *
118999497 TTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
118999513 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
118999529 CTGTAAT
1 CTGTAAT
118999536 CAGTAATTCA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.05, G:0.29, T:0.31
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:118999603 original size:44 final size:46
Alignment explanation
Indices: 118999517--118999609 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 46
118999507 ATAGAGCTGT
*
118999517 AATGGAATAGAGCTGTAATCAGTAATTCAACTGTTTGGTTGAATGG
1 AATGGAATAGAGCTGTAATCAGTAATTCAACTGTTTGGTTGAATAG
* ***
118999563 AATGGAGTAGAGCTGTAAT-AG-AATTCTTGTGTTTGGTTGAATAG
1 AATGGAATAGAGCTGTAATCAGTAATTCAACTGTTTGGTTGAATAG
118999607 AAT
1 AAT
118999610 AATGTTGTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 22 0.52
45 2 0.05
46 18 0.43
ACGTcount: A:0.32, C:0.06, G:0.27, T:0.34
Consensus pattern (46 bp):
AATGGAATAGAGCTGTAATCAGTAATTCAACTGTTTGGTTGAATAG
Found at i:118999623 original size:16 final size:15
Alignment explanation
Indices: 118999598--118999627 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
118999588 CTTGTGTTTG
118999598 GTTGAATAGAATAAT
1 GTTGAATAGAATAAT
118999613 GTTGTAATAGAATAA
1 GTTG-AATAGAATAA
118999628 GGAAAAAAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.47, C:0.00, G:0.20, T:0.33
Consensus pattern (15 bp):
GTTGAATAGAATAAT
Found at i:118999725 original size:25 final size:25
Alignment explanation
Indices: 118999681--118999731 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 25
118999671 GTTGATAGAT
118999681 GATTATTGTTATTAAA-TTTTAATAA
1 GATTATTGTTA-TAAATTTTTAATAA
118999706 GATTATTGTTA-AATATTTTTTAATAA
1 GATTATTGTTATAA-A-TTTTTAATAA
118999732 AAATAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
23 2 0.09
24 1 0.04
25 11 0.48
26 9 0.39
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (25 bp):
GATTATTGTTATAAATTTTTAATAA
Found at i:118999792 original size:24 final size:21
Alignment explanation
Indices: 118999771--118999829 Score: 75
Period size: 20 Copynumber: 2.8 Consensus size: 21
118999761 TAACATAATT
118999771 ATTATTAAATATAATTTAATAA
1 ATTATT-AATATAATTTAATAA
* *
118999793 AATAAT-ATATAATTTAATAA
1 ATTATTAATATAATTTAATAA
118999813 CATTATTAATATAATTT
1 -ATTATTAATATAATTT
118999830 TTAATAATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
20 14 0.45
21 4 0.13
22 13 0.42
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (21 bp):
ATTATTAATATAATTTAATAA
Found at i:118999793 original size:55 final size:54
Alignment explanation
Indices: 118999733--118999853 Score: 127
Period size: 57 Copynumber: 2.2 Consensus size: 54
118999723 TTTTAATAAA
* * *
118999733 AATAAAAATAAATAATTTAATCATATT-TTAACATAATTATTATTAAATATAATTT
1 AATAAAAATAAATAATTTAATAACATTATTAACATAATTATTAAT-AATA-AATTT
* * * *
118999788 AATAAAATAATATATAATTTAATAACATTATTAATATAATTTTTAATAATAATTTT
1 AAT-AAA-AATAAATAATTTAATAACATTATTAACATAATTATTAATAATAAATTT
118999844 AATATAAAAT
1 AATA-AAAAT
118999854 TATTATTATG
Statistics
Matches: 55, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
55 7 0.13
56 12 0.22
57 22 0.40
58 14 0.25
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (54 bp):
AATAAAAATAAATAATTTAATAACATTATTAACATAATTATTAATAATAAATTT
Found at i:118999832 original size:24 final size:24
Alignment explanation
Indices: 118999805--118999850 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
118999795 TAATATATAA
*
118999805 TTTAATAA-CATTATTAATATAATT
1 TTTAATAATAATT-TTAATATAATT
118999829 TTTAATAATAATTTTAATATAA
1 TTTAATAATAATTTTAATATAA
118999851 AATTATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 17 0.85
25 3 0.15
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (24 bp):
TTTAATAATAATTTTAATATAATT
Found at i:119002339 original size:40 final size:40
Alignment explanation
Indices: 119002295--119002374 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
119002285 TAGTTATACA
119002295 GCAGATACTCAAGCAAATAAGTTATTTTGCCAATTTAGAT
1 GCAGATACTCAAGCAAATAAGTTATTTTGCCAATTTAGAT
119002335 GCAGATACTCAAGCAAATAAGTTATTTTGCCAATTTAGAT
1 GCAGATACTCAAGCAAATAAGTTATTTTGCCAATTTAGAT
119002375 AGAGTTCCAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.33
Consensus pattern (40 bp):
GCAGATACTCAAGCAAATAAGTTATTTTGCCAATTTAGAT
Found at i:119005834 original size:15 final size:15
Alignment explanation
Indices: 119005816--119005869 Score: 54
Period size: 17 Copynumber: 3.3 Consensus size: 15
119005806 TTTTATGATT
119005816 TTTATATTTTTAAAA
1 TTTATATTTTTAAAA
*
119005831 TTTATATTATTTGAATA
1 TTTATATT-TTT-AAAA
*
119005848 TTAATAATTTTTAAATA
1 TTTAT-ATTTTTAAA-A
119005865 TTTAT
1 TTTAT
119005870 TGACGTGACA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
15 8 0.26
16 5 0.16
17 15 0.48
18 3 0.10
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (15 bp):
TTTATATTTTTAAAA
Found at i:119006238 original size:14 final size:14
Alignment explanation
Indices: 119006219--119006250 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
119006209 AGATCATTTA
119006219 GCCCAACCAAACTG
1 GCCCAACCAAACTG
119006233 GCCCAACCAAACTG
1 GCCCAACCAAACTG
119006247 GCCC
1 GCCC
119006251 GGTGATTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:119010579 original size:33 final size:33
Alignment explanation
Indices: 119010510--119010607 Score: 108
Period size: 33 Copynumber: 2.9 Consensus size: 33
119010500 CTATACCCAT
* * *
119010510 CTATGCCGAATGCATAGATACATACACTTATTTTCAC
1 CTATGCCGAATGCAT--ACACATA-A-ATATATTCAC
119010547 CTATGCCGAATGCATACACATAAATATATTCAC
1 CTATGCCGAATGCATACACATAAATATATTCAC
* *
119010580 CTATGCCGAATGCA-ACATATATATATAT
1 CTATGCCGAATGCATACACATAAATATAT
119010608 ACATATCTAT
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
32 12 0.21
33 22 0.39
34 1 0.02
35 6 0.11
37 15 0.27
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.31
Consensus pattern (33 bp):
CTATGCCGAATGCATACACATAAATATATTCAC
Found at i:119010892 original size:41 final size:41
Alignment explanation
Indices: 119010823--119010979 Score: 228
Period size: 41 Copynumber: 3.8 Consensus size: 41
119010813 ACCGGCTCTT
*
119010823 AGCCTGCTAGAGCTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGA-CTTATAGTCTGAAATGTGTCACCGGCATTA
119010865 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
119010906 AGCCTGCTAGACTTATAGTCTGAATAAT-T-TCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTG-A-AATGTGTCACCGGCATTA
* * * *
119010947 AGCCTGCTAGACGTAAAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
119010980 TAACGATAAA
Statistics
Matches: 107, Mismatches: 4, Indels: 9
0.89 0.03 0.08
Matches are distributed among these distances:
39 2 0.02
40 2 0.02
41 87 0.81
42 13 0.12
43 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:119018222 original size:33 final size:33
Alignment explanation
Indices: 119018153--119018250 Score: 108
Period size: 33 Copynumber: 2.9 Consensus size: 33
119018143 CTATACCCAT
* * *
119018153 CTATGCCGAATGCATAGATACATACACTTATTTTCAC
1 CTATGCCGAATGCAT--ACACATA-A-ATATATTCAC
119018190 CTATGCCGAATGCATACACATAAATATATTCAC
1 CTATGCCGAATGCATACACATAAATATATTCAC
* *
119018223 CTATGCCGAATGCA-ACATATATATATAT
1 CTATGCCGAATGCATACACATAAATATAT
119018251 ACATATCTAT
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
32 12 0.21
33 22 0.39
34 1 0.02
35 6 0.11
37 15 0.27
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.31
Consensus pattern (33 bp):
CTATGCCGAATGCATACACATAAATATATTCAC
Found at i:119018502 original size:41 final size:41
Alignment explanation
Indices: 119018457--119018612 Score: 235
Period size: 41 Copynumber: 3.8 Consensus size: 41
119018447 ACCGGCTCTT
*
119018457 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
119018498 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
119018539 AGCCTGCTAGACTTATAGTCTGAATAAT-T-TCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTG-A-AATGTGTCACCGGCATTA
* * * *
119018580 AGCCTGCTAGACGTAAAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
119018613 TAACGATAAA
Statistics
Matches: 107, Mismatches: 4, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
39 2 0.02
40 2 0.02
41 98 0.92
42 2 0.02
43 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:119019113 original size:21 final size:23
Alignment explanation
Indices: 119019089--119019136 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
119019079 ATAATATATA
119019089 TATTTC-AC-TCATACTTTTAAT
1 TATTTCAACATCATACTTTTAAT
*
119019110 TATTTCAACTATCATATTTTTAAT
1 TATTTCAAC-ATCATACTTTTAAT
119019134 TAT
1 TAT
119019137 ATTTCATCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 6 0.26
22 2 0.09
24 15 0.65
ACGTcount: A:0.31, C:0.15, G:0.00, T:0.54
Consensus pattern (23 bp):
TATTTCAACATCATACTTTTAAT
Found at i:119022671 original size:12 final size:13
Alignment explanation
Indices: 119022647--119022672 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
119022637 TGTTTGATAG
119022647 AAATTTAAAAAAA
1 AAATTTAAAAAAA
119022660 AAATTTAAAAAAA
1 AAATTTAAAAAAA
119022673 TACATAAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
AAATTTAAAAAAA
Found at i:119023574 original size:9 final size:9
Alignment explanation
Indices: 119023560--119023588 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
119023550 TACCTATATT
119023560 ATTTTTAAA
1 ATTTTTAAA
119023569 ATTTTTAAA
1 ATTTTTAAA
119023578 ATTTTTAAA
1 ATTTTTAAA
119023587 AT
1 AT
119023589 ATATACATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (9 bp):
ATTTTTAAA
Found at i:119025742 original size:23 final size:23
Alignment explanation
Indices: 119025716--119025765 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
119025706 TTTAACAGTC
119025716 TAATAACTTAAATTATAATTTTT
1 TAATAACTTAAATTATAATTTTT
* * * *
119025739 TAATAATTTTATTTTTAATTTTT
1 TAATAACTTAAATTATAATTTTT
119025762 TAAT
1 TAAT
119025766 TTTTTAAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (23 bp):
TAATAACTTAAATTATAATTTTT
Found at i:119025761 original size:8 final size:8
Alignment explanation
Indices: 119025731--119025772 Score: 52
Period size: 8 Copynumber: 5.4 Consensus size: 8
119025721 ACTTAAATTA
119025731 TAATTTTT
1 TAATTTTT
*
119025739 TAATAATTT
1 TAAT-TTTT
119025748 T-A-TTTT
1 TAATTTTT
119025754 TAATTTTT
1 TAATTTTT
119025762 TAATTTTT
1 TAATTTTT
119025770 TAA
1 TAA
119025773 AATTGAGCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
6 4 0.14
7 1 0.03
8 20 0.69
9 4 0.14
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (8 bp):
TAATTTTT
Found at i:119026107 original size:22 final size:21
Alignment explanation
Indices: 119026082--119026137 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
119026072 TTTATTCGAG
*
119026082 TTAATTAATTAATTATAATTAT
1 TTAATTAATTAATTATAA-TAA
* * *
119026104 TTAATTCAGTATTTATAATAA
1 TTAATTAATTAATTATAATAA
119026125 TTAATTATATTAA
1 TTAATTA-ATTAA
119026138 AATTATAAAT
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
21 8 0.31
22 18 0.69
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (21 bp):
TTAATTAATTAATTATAATAA
Found at i:119028355 original size:91 final size:91
Alignment explanation
Indices: 119028200--119028384 Score: 370
Period size: 91 Copynumber: 2.0 Consensus size: 91
119028190 AACGTCTAAA
119028200 ATTGAAATAATCCTCTTAAATTATAATGGTAGTGTATATTTTATAACAAATCATATTCAAACTAT
1 ATTGAAATAATCCTCTTAAATTATAATGGTAGTGTATATTTTATAACAAATCATATTCAAACTAT
119028265 CTGTTTATTAATTATTTAATTCACAT
66 CTGTTTATTAATTATTTAATTCACAT
119028291 ATTGAAATAATCCTCTTAAATTATAATGGTAGTGTATATTTTATAACAAATCATATTCAAACTAT
1 ATTGAAATAATCCTCTTAAATTATAATGGTAGTGTATATTTTATAACAAATCATATTCAAACTAT
119028356 CTGTTTATTAATTATTTAATTCACAT
66 CTGTTTATTAATTATTTAATTCACAT
119028382 ATT
1 ATT
119028385 TCTAATATGC
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 94 1.00
ACGTcount: A:0.38, C:0.11, G:0.06, T:0.44
Consensus pattern (91 bp):
ATTGAAATAATCCTCTTAAATTATAATGGTAGTGTATATTTTATAACAAATCATATTCAAACTAT
CTGTTTATTAATTATTTAATTCACAT
Found at i:119032171 original size:29 final size:31
Alignment explanation
Indices: 119032103--119032172 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 31
119032093 ATTGAACCTG
* *
119032103 AAATTTGAAAAAGTAGATAAATTAAATTATT
1 AAATTTTAAAAAGTACATAAATTAAATTATT
** *
119032134 AAA-AATAAAAA-TACATGAATTAAATT-TT
1 AAATTTTAAAAAGTACATAAATTAAATTATT
119032162 AAATTTTAAAA
1 AAATTTTAAAA
119032173 TAATATTTTA
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
28 5 0.16
29 18 0.58
30 5 0.16
31 3 0.10
ACGTcount: A:0.59, C:0.01, G:0.06, T:0.34
Consensus pattern (31 bp):
AAATTTTAAAAAGTACATAAATTAAATTATT
Found at i:119033224 original size:16 final size:17
Alignment explanation
Indices: 119033195--119033227 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
119033185 ATTTTATATT
119033195 GATATATTACATAAATA
1 GATATATTACATAAATA
*
119033212 GATA-ATTATATAAATA
1 GATATATTACATAAATA
119033228 ATTACACTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (17 bp):
GATATATTACATAAATA
Found at i:119033251 original size:29 final size:29
Alignment explanation
Indices: 119033215--119033287 Score: 78
Period size: 31 Copynumber: 2.4 Consensus size: 29
119033205 ATAAATAGAT
119033215 AATTATATA-AATAATTACAC-TAAATCAA
1 AATTATATATAA-AATTACACGTAAATCAA
*
119033243 AATTCATATATCAAATTACACGTTAAATCAA
1 AATT-ATATATAAAATTACACG-TAAATCAA
*
119033274 AATTTTTATATAAA
1 AA-TTATATATAAA
119033288 TTTAATATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
28 4 0.11
29 13 0.35
30 1 0.03
31 17 0.46
32 2 0.05
ACGTcount: A:0.52, C:0.11, G:0.01, T:0.36
Consensus pattern (29 bp):
AATTATATATAAAATTACACGTAAATCAA
Found at i:119033284 original size:31 final size:28
Alignment explanation
Indices: 119033227--119033289 Score: 81
Period size: 31 Copynumber: 2.1 Consensus size: 28
119033217 TTATATAAAT
119033227 AATTACACTAAATCAAAATTCATATATCA
1 AATTACACTAAATCAAAATTCATATAT-A
**
119033256 AATTACACGTTAAATCAAAATTTTTATATA
1 AATTACAC--TAAATCAAAATTCATATATA
119033286 AATT
1 AATT
119033290 TAATATTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
29 8 0.27
30 5 0.17
31 17 0.57
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.37
Consensus pattern (28 bp):
AATTACACTAAATCAAAATTCATATATA
Found at i:119033797 original size:39 final size:39
Alignment explanation
Indices: 119033743--119033822 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
119033733 ATCCCATTCG
119033743 GTGGGGAGGCTCGAATCAAGTGTTGGATTCTTGTATGTT
1 GTGGGGAGGCTCGAATCAAGTGTTGGATTCTTGTATGTT
119033782 GTGGGGAGGCTCGAATCAAGTGTTGGATTCTTGTATGTT
1 GTGGGGAGGCTCGAATCAAGTGTTGGATTCTTGTATGTT
119033821 GT
1 GT
119033823 TACTTATACC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.17, C:0.10, G:0.36, T:0.36
Consensus pattern (39 bp):
GTGGGGAGGCTCGAATCAAGTGTTGGATTCTTGTATGTT
Found at i:119037943 original size:22 final size:23
Alignment explanation
Indices: 119037917--119037973 Score: 107
Period size: 23 Copynumber: 2.5 Consensus size: 23
119037907 TTCAATTTTG
119037917 AAAAATATAAAACATTTTTATTA
1 AAAAATATAAAACATTTTTATTA
119037940 AAAAATATAAAACATTTTTATT-
1 AAAAATATAAAACATTTTTATTA
119037962 AAAAATATAAAA
1 AAAAATATAAAA
119037974 ATTCAATAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 12 0.35
23 22 0.65
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (23 bp):
AAAAATATAAAACATTTTTATTA
Found at i:119049490 original size:12 final size:12
Alignment explanation
Indices: 119049473--119049497 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
119049463 TCTCATCATA
119049473 ATTCCCTTTGTC
1 ATTCCCTTTGTC
119049485 ATTCCCTTTGTC
1 ATTCCCTTTGTC
119049497 A
1 A
119049498 AATTTAGCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.12, C:0.32, G:0.08, T:0.48
Consensus pattern (12 bp):
ATTCCCTTTGTC
Found at i:119051345 original size:159 final size:157
Alignment explanation
Indices: 119050966--119051590 Score: 707
Period size: 160 Copynumber: 4.0 Consensus size: 157
119050956 ATCCGGACCC
* * *
119050966 GGGACTTATTTCGATTGATTCATTCAGTTACCTTTAAAAGATGGCAT-CAGATATATATGGGGTT
1 GGGACTTATTTCGATTGATTCATCCAGTCACCTTTAAAAGATGGCATCCA-ACATATATGGGGTT
* *
119051030 CGGAA-ACCAATATCTATACCAAAAGGTAAACTTTTAATCATTTGGGGTGTATTG-----A-A-A
65 C-GAATCCCAATATCTATACCAAAAGGGAAACTTTTAATCATTT-GGGTGTATTGAAATCAGAGA
* *
119051087 A-GTGTCGTGGAGCTAAGAATGTGCTCGGAT
128 ATGTGTCATGGAGCTAAAAATGTGCTC-GAT
* * * * *
119051117 GGGATTTATTTCGATTGATTCATCCAGTCACCTTTAAAAGATGGTATTCGACATATATGGGGTTT
1 GGGACTTATTTCGATTGATTCATCCAGTCACCTTTAAAAGATGGCATCCAACATATATGGGGTTC
*
119051182 GAATCCCAATATCTATA-CAATAAGGGAAAGTTTTAATCATTTGGGTGTATTGAAACTCAGAGAA
66 GAATCCCAATATCTATACCAA-AAGGGAAACTTTTAATCATTTGGGTGTATTGAAA-TCAGAGAA
* *
119051246 TGTGTCGTGGTGCTAAAAATGTGCTCAGAT
129 TGTGTCATGGAGCTAAAAATGTGCTC-GAT
* ** * * * * * *
119051276 GGGACTTATTTCTGAGTGATTCATTTAGCCACCTTTAAAAGATGACACCCAAAAGATTTGGGG-T
1 GGGACTTATTTC-GATTGATTCATCCAGTCACCTTTAAAAGATGGCATCCAACATATATGGGGTT
* *
119051340 CGAATCCCAATATCTGTACCAAAAGGGAAACTTTTAATCATTTGGGTGTACTGAAAATTCAGAGA
65 CGAATCCCAATATCTATACCAAAAGGGAAACTTTTAATCATTTGGGTGTATTG-AAA-TCAGAGA
* **
119051405 ATGAGTCACAGAGCTAAAAATGTGCTCGAAT
128 ATGTGTCATGGAGCTAAAAATGTGCTCG-AT
* * * * *
119051436 GGGACTTCTTTCGATTGATTCATCCAATTATCTTTAAAAGATGGCATCCAACATATTTGGGGTTC
1 GGGACTTATTTCGATTGATTCATCCAGTCACCTTTAAAAGATGGCATCCAACATATATGGGGTTC
* *
119051501 GAATCCCAATATCTATACCAAAAGGGAAACTTCTAATCATTTGGGTGCATTGAAAGTCTAGAGAA
66 GAATCCCAATATCTATACCAAAAGGGAAACTTTTAATCATTTGGGTGTATTGAAA-TC-AGAGAA
* *
119051566 TATGTCATGGTGCTAAAAATGTGCT
129 TGTGTCATGGAGCTAAAAATGTGCT
119051591 TGGATGACAA
Statistics
Matches: 398, Mismatches: 58, Indels: 27
0.82 0.12 0.06
Matches are distributed among these distances:
150 16 0.04
151 87 0.22
152 1 0.00
156 1 0.00
157 1 0.00
158 2 0.01
159 128 0.32
160 162 0.41
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (157 bp):
GGGACTTATTTCGATTGATTCATCCAGTCACCTTTAAAAGATGGCATCCAACATATATGGGGTTC
GAATCCCAATATCTATACCAAAAGGGAAACTTTTAATCATTTGGGTGTATTGAAATCAGAGAATG
TGTCATGGAGCTAAAAATGTGCTCGAT
Found at i:119058058 original size:18 final size:19
Alignment explanation
Indices: 119058022--119058059 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
119058012 GCAGCAGTAC
*
119058022 TCTTCTATTTTGCTCTAAG
1 TCTTCTATTTTCCTCTAAG
*
119058041 TCTTC-ATTTTCCTTTAAG
1 TCTTCTATTTTCCTCTAAG
119058059 T
1 T
119058060 ATCCTTGTCC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.16, C:0.21, G:0.08, T:0.55
Consensus pattern (19 bp):
TCTTCTATTTTCCTCTAAG
Found at i:119060850 original size:104 final size:103
Alignment explanation
Indices: 119060563--119060861 Score: 379
Period size: 103 Copynumber: 2.9 Consensus size: 103
119060553 CTTGTTAAAG
* *
119060563 ACTTGAAGTCAATTGCAAAAACCAATTTTTTTAATTTGATGGTATAATTTTTCCCCAAGTCCCTG
1 ACTTGAAGTCAGTTGCAAAAA-C--TTTTTTTAATTTGATGGTATAATTTTTCCCCAAGTCCCTA
* * *
119060628 TACTCTTTTAAATTTTTGAAATTCAA-CTTTTTTATAAGAGA
63 TACCCTTTGAAA-TTTTGAAATTTAATCTTTTTTATAAGAGA
* * * *
119060669 ACTTGAAGCCAGTTGCAAAAACTTTTTTTAATTTGATGGTCTAATTTTTACCCAAGTCTCTAT-C
1 ACTTGAAGTCAGTTGCAAAAACTTTTTTTAATTTGATGGTATAATTTTTCCCCAAGTCCCTATAC
* * *
119060733 CTCTTTGAAATTTTGAAATTTAATTTTTTTTATATGATA
66 C-CTTTGAAATTTTGAAATTTAATCTTTTTTATAAGAGA
* * *
119060772 ACTTGAAGTCAGTTGCAAAAACTTTTTTTAAATTT-AGTGGTTTAATTTTGCCCCAAATCCCTAT
1 ACTTGAAGTCAGTTGCAAAAACTTTTTTT-AATTTGA-TGGTATAATTTTTCCCCAAGTCCCTAT
119060836 ACCCTTTGAAATTTTGAAATTTAATC
64 ACCCTTTGAAATTTTGAAATTTAATC
119060862 ATTCTTTTTC
Statistics
Matches: 169, Mismatches: 19, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
102 13 0.08
103 85 0.50
104 49 0.29
105 3 0.02
106 19 0.11
ACGTcount: A:0.31, C:0.15, G:0.11, T:0.43
Consensus pattern (103 bp):
ACTTGAAGTCAGTTGCAAAAACTTTTTTTAATTTGATGGTATAATTTTTCCCCAAGTCCCTATAC
CCTTTGAAATTTTGAAATTTAATCTTTTTTATAAGAGA
Found at i:119063409 original size:26 final size:26
Alignment explanation
Indices: 119063380--119063432 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
119063370 ATGGTATACT
119063380 TTACCATTTATTTAACAATATAGTTA
1 TTACCATTTATTTAACAATATAGTTA
119063406 TTACCATTTATTTAACAATATAGTTA
1 TTACCATTTATTTAACAATATAGTTA
119063432 T
1 T
119063433 CATTTTATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.38, C:0.11, G:0.04, T:0.47
Consensus pattern (26 bp):
TTACCATTTATTTAACAATATAGTTA
Found at i:119064829 original size:11 final size:11
Alignment explanation
Indices: 119064813--119064842 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
119064803 CCATAGGATT
119064813 GCGTGGAATCC
1 GCGTGGAATCC
119064824 GCGTGGAATCC
1 GCGTGGAATCC
119064835 GCGTGGAA
1 GCGTGGAA
119064843 ATGTGTGGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.20, C:0.23, G:0.40, T:0.17
Consensus pattern (11 bp):
GCGTGGAATCC
Found at i:119067906 original size:27 final size:27
Alignment explanation
Indices: 119067863--119067915 Score: 63
Period size: 26 Copynumber: 1.9 Consensus size: 27
119067853 TTACACCTAA
*
119067863 TAAAAAGTTAACAGTTA-AATTTAATT
1 TAAAAAATTAACAGTTACAATTTAATT
*
119067889 TAAAAAATTAAACCGTTACTAATTTAA
1 TAAAAAATT-AACAGTTAC-AATTTAA
119067916 GATTTAAAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
26 8 0.36
27 7 0.32
29 7 0.32
ACGTcount: A:0.51, C:0.08, G:0.06, T:0.36
Consensus pattern (27 bp):
TAAAAAATTAACAGTTACAATTTAATT
Found at i:119073324 original size:213 final size:213
Alignment explanation
Indices: 119072957--119073385 Score: 849
Period size: 213 Copynumber: 2.0 Consensus size: 213
119072947 ATTTTGTAAC
119072957 TTTTTGAAGTTGAATGACCAAAATATAAACTTACTAATAGTTTAGTGACCTTGGTTATAGTTTAA
1 TTTTTGAAGTTGAATGACCAAAATATAAACTTACTAATAGTTTAGTGACCTTGGTTATAGTTTAA
119073022 CCTATTTTTAAACAGTAAATCAGAGCAGATGAACAGGACTAACGTGAAAAGATTAAAACTCAAAT
66 CCTATTTTTAAACAGTAAATCAGAGCAGATGAACAGGACTAACGTGAAAAGATTAAAACTCAAAT
119073087 CTTCTCAAAAAAAACTAGGCCGATTGGATCGAGAGAGGCCCCGACCATAGCCCAGGTTTTGGGCC
131 CTTCTCAAAAAAAACTAGGCCGATTGGATCGAGAGAGGCCCCGACCATAGCCCAGGTTTTGGGCC
119073152 TTTTGGCGGAATTATTAT
196 TTTTGGCGGAATTATTAT
119073170 TTTTTGAAGTTGAATGACCAAAATATAAACTTACTAATAGTTTAGTGACCTTGGTTATAGTTTAA
1 TTTTTGAAGTTGAATGACCAAAATATAAACTTACTAATAGTTTAGTGACCTTGGTTATAGTTTAA
119073235 CCTATTTTTAAACAGTAAATCAGAGCAGATGAACAGGACTAACGTGAAAAGATTAAAACTCAAAT
66 CCTATTTTTAAACAGTAAATCAGAGCAGATGAACAGGACTAACGTGAAAAGATTAAAACTCAAAT
*
119073300 CTTCTCAAAAAAAACTAGGCCGATTGGATCGAGAGCGGCCCCGACCATAGCCCAGGTTTTGGGCC
131 CTTCTCAAAAAAAACTAGGCCGATTGGATCGAGAGAGGCCCCGACCATAGCCCAGGTTTTGGGCC
119073365 TTTTGGCGGAATTATTAT
196 TTTTGGCGGAATTATTAT
119073383 TTT
1 TTT
119073386 CGCGGCGTTT
Statistics
Matches: 215, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
213 215 1.00
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.30
Consensus pattern (213 bp):
TTTTTGAAGTTGAATGACCAAAATATAAACTTACTAATAGTTTAGTGACCTTGGTTATAGTTTAA
CCTATTTTTAAACAGTAAATCAGAGCAGATGAACAGGACTAACGTGAAAAGATTAAAACTCAAAT
CTTCTCAAAAAAAACTAGGCCGATTGGATCGAGAGAGGCCCCGACCATAGCCCAGGTTTTGGGCC
TTTTGGCGGAATTATTAT
Found at i:119076316 original size:24 final size:25
Alignment explanation
Indices: 119076269--119076320 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
119076259 TTATGTTTCG
119076269 TTCGTTTCTAAAAATCAATAAAATT
1 TTCGTTTCTAAAAATCAATAAAATT
* *
119076294 TTCGTTTCTAAAAATCATTAAATTT
1 TTCGTTTCTAAAAATCAATAAAATT
119076319 TT
1 TT
119076321 TTATTTATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.38, C:0.12, G:0.04, T:0.46
Consensus pattern (25 bp):
TTCGTTTCTAAAAATCAATAAAATT
Found at i:119077705 original size:14 final size:14
Alignment explanation
Indices: 119077686--119077725 Score: 71
Period size: 14 Copynumber: 2.9 Consensus size: 14
119077676 GTTGAAATAC
119077686 ATATGTGTATATAT
1 ATATGTGTATATAT
119077700 ATATGTGTATATAT
1 ATATGTGTATATAT
*
119077714 ATATATGTATAT
1 ATATGTGTATAT
119077726 TATGAATTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (14 bp):
ATATGTGTATATAT
Found at i:119080615 original size:9 final size:9
Alignment explanation
Indices: 119080603--119080793 Score: 109
Period size: 9 Copynumber: 20.1 Consensus size: 9
119080593 TTATGAATTT
119080603 TTTTTATAA
1 TTTTTATAA
119080612 TTTTTATAA
1 TTTTTATAA
*
119080621 GTTTATATCAA
1 -TTTTTAT-AA
* *
119080632 TTTTAAT-T
1 TTTTTATAA
119080640 TTTTTCATAA
1 TTTTT-ATAA
*
119080650 TTTTTTACAA
1 -TTTTTATAA
*
119080660 TTTTTTATTA
1 -TTTTTATAA
119080670 TTTTTAAGTAA
1 TTTTT-A-TAA
*
119080681 TATATTTTTAA
1 T-T-TTTATAA
**
119080692 TTTAAAT-A
1 TTTTTATAA
**
119080700 TTGTAAATAA
1 TT-TTTATAA
*
119080710 TTTTTATTA
1 TTTTTATAA
*
119080719 CTTTTATAA
1 TTTTTATAA
119080728 TTTTTATAA
1 TTTTTATAA
*
119080737 TTTATTAGAA
1 TTT-TTATAA
119080747 TTTATTAT-A
1 TTT-TTATAA
119080756 TTTTTATAA
1 TTTTTATAA
*
119080765 TATTTATAA
1 TTTTTATAA
119080774 GTTTTTATAA
1 -TTTTTATAA
*
119080784 TTTTTTTAA
1 TTTTTATAA
119080793 T
1 T
119080794 AAATTTAATA
Statistics
Matches: 143, Mismatches: 25, Indels: 28
0.73 0.13 0.14
Matches are distributed among these distances:
8 11 0.08
9 67 0.47
10 47 0.33
11 14 0.10
12 1 0.01
13 3 0.02
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.62
Consensus pattern (9 bp):
TTTTTATAA
Found at i:119080864 original size:11 final size:11
Alignment explanation
Indices: 119080848--119080889 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
119080838 TAATTTGTTT
119080848 TGATTTTTTTC
1 TGATTTTTTTC
*
119080859 TGATTTTATCTTA
1 TGATTTT-T-TTC
119080872 T-ATTTTTTTC
1 TGATTTTTTTC
119080882 TGATTTTT
1 TGATTTTT
119080890 AATATTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
10 3 0.12
11 14 0.54
12 6 0.23
13 3 0.12
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.71
Consensus pattern (11 bp):
TGATTTTTTTC
Found at i:119084240 original size:19 final size:20
Alignment explanation
Indices: 119084193--119084240 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
119084183 TTCTCATAAC
119084193 AAATT-AAAATTTAATAAAA
1 AAATTAAAAATTTAATAAAA
* *
119084212 ATATTAAAAATTT-TTAAAA
1 AAATTAAAAATTTAATAAAA
119084231 AAATTAAAAA
1 AAATTAAAAA
119084241 ATTCATCCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
AAATTAAAAATTTAATAAAA
Found at i:119085081 original size:60 final size:60
Alignment explanation
Indices: 119085006--119085124 Score: 211
Period size: 60 Copynumber: 2.0 Consensus size: 60
119084996 ATACTAAACT
* *
119085006 AAACACAACAGTTTATAATATAATCCTAAATTACTAATAAATTAATTTTAAAATAATTAC
1 AAACACAACAATTTATAATATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
*
119085066 AAACACAATAATTTATAATATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
1 AAACACAACAATTTATAATATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
119085125 TTAAAAAATA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.53, C:0.11, G:0.01, T:0.35
Consensus pattern (60 bp):
AAACACAACAATTTATAATATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
Found at i:119087474 original size:237 final size:226
Alignment explanation
Indices: 119087058--119087513 Score: 558
Period size: 237 Copynumber: 2.0 Consensus size: 226
119087048 TTCAGAATCT
* * * *
119087058 TATATATATGAACTAGAAGATCAAACATCACCAGAACTCCTTCACTATGTATGCACTATGAACTT
1 TATATATATGAACTAGAAAATCAAACATCACCAGAACTCCATCACTATGCATGAACTATGAACTT
* * **
119087123 ACCATTGTTATATTTTGCTACTAAAATCTACACTTGAAATAAATTACAGTTTCATTTCAAATTTT
66 ACCATTGTTATATTTTACTACTAAAATCTACACTTGAAATAAATTACAGTTTCATTCCAAATTCA
* * * *
119087188 GAACTTCCTCAAATAATTTCCATTCAAACACTCATATGATACTAATCAAGTTAAAAAATTAGCCA
131 AAACTTCCTCAAATAAGTTCCATTCAAACACTCATATGATACTAATCAAGTT--AAAATTAACAA
*
119087253 AA-AAACTTCAAAATATTATATATATGTGTATA
194 AAGAAACATCAAAATATTATATATATGTGTATA
* * *
119087285 TATATATATGAACTAGAAAATCAATAAAACATCACTAGCACTCCATCACTATGCATGAATTATGA
1 TATATATATGAACTAGAAAATC----AAACATCACCAGAACTCCATCACTATGCATGAACTATGA
* *
119087350 ACTTAACCATTGTTATATTTTACTACTAAAATCTACACCTGAACCTGATATAAATTACAGTTTTA
62 ACTT-ACCATTGTTATATTTTACTACTAAAATCTACA-CT-----TGAAATAAATTACAGTTTCA
* ** *
119087415 TTCCAAGTTCAAAACTT-CTCAAATGGGTTCCATTCAAACTCTCATATGATA-TCAATCAAGTTA
120 TTCCAAATTCAAAACTTCCTCAAATAAGTTCCATTCAAACACTCATATGATACT-AATCAAGTTA
*
119087478 AATTTAACAAAAGAAACATCAAAATATTATATATAT
184 AAATTAACAAAAGAAACATCAAAATATTATATATAT
119087514 ATATATAAAA
Statistics
Matches: 193, Mismatches: 23, Indels: 17
0.83 0.10 0.07
Matches are distributed among these distances:
227 21 0.11
231 37 0.19
232 31 0.16
233 2 0.01
235 10 0.05
236 23 0.12
237 39 0.20
238 30 0.16
ACGTcount: A:0.41, C:0.18, G:0.07, T:0.34
Consensus pattern (226 bp):
TATATATATGAACTAGAAAATCAAACATCACCAGAACTCCATCACTATGCATGAACTATGAACTT
ACCATTGTTATATTTTACTACTAAAATCTACACTTGAAATAAATTACAGTTTCATTCCAAATTCA
AAACTTCCTCAAATAAGTTCCATTCAAACACTCATATGATACTAATCAAGTTAAAATTAACAAAA
GAAACATCAAAATATTATATATATGTGTATA
Found at i:119088746 original size:17 final size:18
Alignment explanation
Indices: 119088724--119088758 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
119088714 TTGTGGCCGG
119088724 TTGG-TTCATCGATTCAA
1 TTGGTTTCATCGATTCAA
*
119088741 TTGGTTTGATCGATTCAA
1 TTGGTTTCATCGATTCAA
119088759 CCAGTTTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.23, C:0.14, G:0.20, T:0.43
Consensus pattern (18 bp):
TTGGTTTCATCGATTCAA
Found at i:119089253 original size:10 final size:9
Alignment explanation
Indices: 119089237--119089313 Score: 50
Period size: 10 Copynumber: 8.0 Consensus size: 9
119089227 AATATTGTAA
119089237 ATAATTTTT
1 ATAATTTTT
119089246 ATTAA-TTTT
1 A-TAATTTTT
119089255 ATAATTTTTTCT
1 ATAA--TTTT-T
119089267 ATAATTTATT
1 ATAATTT-TT
* *
119089277 GT-AGTTTT
1 ATAATTTTT
*
119089285 ATAGTTTTT
1 ATAATTTTT
119089294 ATAAGTTTTT
1 ATAA-TTTTT
119089304 ATAAATTTTT
1 AT-AATTTTT
119089314 TTATTGTTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 17
0.70 0.08 0.22
Matches are distributed among these distances:
8 6 0.11
9 16 0.30
10 20 0.38
11 6 0.11
12 5 0.09
ACGTcount: A:0.30, C:0.01, G:0.05, T:0.64
Consensus pattern (9 bp):
ATAATTTTT
Found at i:119089390 original size:19 final size:18
Alignment explanation
Indices: 119089346--119089420 Score: 62
Period size: 19 Copynumber: 3.9 Consensus size: 18
119089336 TCAATTTTAA
*
119089346 TATTTAATATTTTTATAATT
1 TATTTTATATTTTTAT--TT
* *
119089366 TGTTTTGATTTTTTTATTT
1 TATTTT-ATATTTTTATTT
119089385 TATTTTATAATTTTT-TTT
1 TATTTTAT-ATTTTTATTT
119089403 TATTCTTAATATTTTTAT
1 TATT-TT-ATATTTTTAT
119089421 GAGAAAATAT
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
18 9 0.20
19 20 0.44
20 7 0.16
21 9 0.20
ACGTcount: A:0.24, C:0.01, G:0.03, T:0.72
Consensus pattern (18 bp):
TATTTTATATTTTTATTT
Found at i:119089398 original size:18 final size:20
Alignment explanation
Indices: 119089377--119089420 Score: 56
Period size: 18 Copynumber: 2.3 Consensus size: 20
119089367 GTTTTGATTT
119089377 TTTTATTTTATT-TT-ATAA
1 TTTTATTTTATTCTTAATAA
* *
119089395 TTTTTTTTTATTCTTAATAT
1 TTTTATTTTATTCTTAATAA
119089415 TTTTAT
1 TTTTAT
119089421 GAGAAAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 11 0.52
19 2 0.10
20 8 0.38
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (20 bp):
TTTTATTTTATTCTTAATAA
Found at i:119089657 original size:5 final size:5
Alignment explanation
Indices: 119089640--119089682 Score: 61
Period size: 5 Copynumber: 8.4 Consensus size: 5
119089630 CATATAAGCC
119089640 TATTA TA-TA TATTA TATTA TATTATA TATTA TATTA TATTA TA
1 TATTA TATTA TATTA TATTA TA-T-TA TATTA TATTA TATTA TA
119089683 ACTTGTGACA
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
4 4 0.11
5 25 0.71
6 2 0.06
7 4 0.11
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TATTA
Found at i:119089665 original size:17 final size:17
Alignment explanation
Indices: 119089645--119089682 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
119089635 AAGCCTATTA
119089645 TATATATTATATTATAT
1 TATATATTATATTATAT
119089662 TATATATTATATTATAT
1 TATATATTATATTATAT
119089679 TATA
1 TATA
119089683 ACTTGTGACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
TATATATTATATTATAT
Found at i:119089667 original size:12 final size:12
Alignment explanation
Indices: 119089640--119089678 Score: 60
Period size: 12 Copynumber: 3.1 Consensus size: 12
119089630 CATATAAGCC
119089640 TATTATATATATTA
1 TATTATAT-TA-TA
119089654 TATTATATTATA
1 TATTATATTATA
119089666 TATTATATTATA
1 TATTATATTATA
119089678 T
1 T
119089679 TATAACTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 15 0.60
13 2 0.08
14 8 0.32
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
TATTATATTATA
Found at i:119090230 original size:3 final size:3
Alignment explanation
Indices: 119090222--119090249 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
119090212 ATATCTACCA
119090222 CTG CTG CTG CTG CTG CTG CTG CTG CTG C
1 CTG CTG CTG CTG CTG CTG CTG CTG CTG C
119090250 AACCATAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.36, G:0.32, T:0.32
Consensus pattern (3 bp):
CTG
Found at i:119090865 original size:17 final size:17
Alignment explanation
Indices: 119090843--119090876 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
119090833 ATCCACTAAT
*
119090843 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
119090860 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
119090877 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:119095504 original size:17 final size:17
Alignment explanation
Indices: 119095482--119095515 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
119095472 ATCCACTAAT
*
119095482 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
119095499 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
119095516 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:119095827 original size:150 final size:150
Alignment explanation
Indices: 119095556--119095830 Score: 415
Period size: 150 Copynumber: 1.8 Consensus size: 150
119095546 ACAATTCGAA
* *
119095556 TGTTGCCAACATCTTCCATTTCCATTAACCGGTCTCTCACAAGGAGCACCATCGCAAGTGGGTGC
1 TGTTGCCAACACCTTCCATTTCCACTAACCGGTCTCTCACAAGGAGCACCATCGCAAGTGGGTGC
* * * * *
119095621 TCCACAAACGGATGTAATATCACCACCACCGTGGTCCAACCATTGTGGAGTAAAACTGCTACCGC
66 TCCACAAACGAATATAATATCACCACCACCATGGTCCAACCACTGCGGAGTAAAACTGCTACCGC
119095686 CGTCCCTGCCATAATCCAAG
131 CGTCCCTGCCATAATCCAAG
* * * * *
119095706 TGTTGCCAACACCTTCCATTTCCACTAACCGGTCTCTCGCAAGGAGCACCATTGTAGGTGGTTGC
1 TGTTGCCAACACCTTCCATTTCCACTAACCGGTCTCTCACAAGGAGCACCATCGCAAGTGGGTGC
** *
119095771 TCCACAAATTAATATAATATCATCACCACCATGGTCCAACCACTGCGGAGTAAAACTGCT
66 TCCACAAACGAATATAATATCACCACCACCATGGTCCAACCACTGCGGAGTAAAACTGCT
119095831 GCCATAGCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
150 110 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (150 bp):
TGTTGCCAACACCTTCCATTTCCACTAACCGGTCTCTCACAAGGAGCACCATCGCAAGTGGGTGC
TCCACAAACGAATATAATATCACCACCACCATGGTCCAACCACTGCGGAGTAAAACTGCTACCGC
CGTCCCTGCCATAATCCAAG
Found at i:119096723 original size:21 final size:20
Alignment explanation
Indices: 119096686--119096724 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
119096676 CCAAAAAATC
*
119096686 AAAATAAAAAATTAATATGA
1 AAAATAAAAAATAAATATGA
119096706 AAAATAAAAAATCAAATAT
1 AAAATAAAAAAT-AAATAT
119096725 AGTTATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.23
Consensus pattern (20 bp):
AAAATAAAAAATAAATATGA
Found at i:119099098 original size:7 final size:7
Alignment explanation
Indices: 119099086--119099110 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
119099076 GTTTCCCTTT
119099086 TTCCCTC
1 TTCCCTC
119099093 TTCCCTC
1 TTCCCTC
119099100 TTCCCTC
1 TTCCCTC
119099107 TTCC
1 TTCC
119099111 ACCCTCAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (7 bp):
TTCCCTC
Found at i:119099680 original size:16 final size:15
Alignment explanation
Indices: 119099655--119099688 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
119099645 ACTCCAAGCA
119099655 TCTCCATTTTTTCTCT
1 TCTCCATTTTTT-TCT
*
119099671 TCTCCTTTTTTTTCT
1 TCTCCATTTTTTTCT
119099686 TCT
1 TCT
119099689 TTTTCTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.03, C:0.29, G:0.00, T:0.68
Consensus pattern (15 bp):
TCTCCATTTTTTTCT
Found at i:119099681 original size:15 final size:16
Alignment explanation
Indices: 119099655--119099688 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
119099645 ACTCCAAGCA
119099655 TCTCCATTTTTTCTCT
1 TCTCCATTTTTTCTCT
*
119099671 TCTCC-TTTTTTTTCT
1 TCTCCATTTTTTCTCT
119099686 TCT
1 TCT
119099689 TTTTCTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.03, C:0.29, G:0.00, T:0.68
Consensus pattern (16 bp):
TCTCCATTTTTTCTCT
Found at i:119099689 original size:18 final size:18
Alignment explanation
Indices: 119099661--119099703 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
119099651 AGCATCTCCA
119099661 TTTTTTC-TCTTCTCCTT
1 TTTTTTCTTCTTCTCCTT
* *
119099678 TTTTTTCTTCTTTTTCTT
1 TTTTTTCTTCTTCTCCTT
*
119099696 TTTCTTCT
1 TTTTTTCT
119099704 CTATGTTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTTTTCTTCTTCTCCTT
Found at i:119099869 original size:30 final size:31
Alignment explanation
Indices: 119099817--119099884 Score: 95
Period size: 30 Copynumber: 2.2 Consensus size: 31
119099807 TTGTTAACCG
*
119099817 GTGACTGTTTTGTCATTTTTTTATAACGTT-A
1 GTGACTGTTTTGTCATTTTTTTA-AAAGTTGA
*
119099848 GTGACTGTTTTGTTA-TTTTTTAAAAGTTGA
1 GTGACTGTTTTGTCATTTTTTTAAAAGTTGA
119099878 GTGACTG
1 GTGACTG
119099885 AAATGAAACT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
29 5 0.15
30 15 0.44
31 14 0.41
ACGTcount: A:0.21, C:0.07, G:0.21, T:0.51
Consensus pattern (31 bp):
GTGACTGTTTTGTCATTTTTTTAAAAGTTGA
Found at i:119106989 original size:2 final size:2
Alignment explanation
Indices: 119106982--119107010 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
119106972 AGATTGAAAA
119106982 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
119107011 ATAACGAGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:119111862 original size:60 final size:62
Alignment explanation
Indices: 119111743--119111875 Score: 166
Period size: 60 Copynumber: 2.2 Consensus size: 62
119111733 TTTTATTAAT
****
119111743 ATATTAATAAATTTAACTCTTCAATATTTATATGTTTTATTAATTTAATCTTAAATCTAAAA
1 ATATTAATAAATTTAACTCTTCAATATTTATAAAAATTATTAATTTAATCTTAAATCTAAAA
* * *
119111805 AT-TTAATAAATTTAACTCTT-AATATTTATAAAAATTATTATTTTAGT-TCTAATTCTAAAA
1 ATATTAATAAATTTAACTCTTCAATATTTATAAAAATTATTAATTTAATCT-TAAATCTAAAA
119111865 ATATTAA-AAAT
1 ATATTAATAAAT
119111876 AAAAATTGTT
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
59 1 0.02
60 37 0.60
61 22 0.35
62 2 0.03
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.47
Consensus pattern (62 bp):
ATATTAATAAATTTAACTCTTCAATATTTATAAAAATTATTAATTTAATCTTAAATCTAAAA
Found at i:119120154 original size:22 final size:22
Alignment explanation
Indices: 119120083--119120162 Score: 67
Period size: 21 Copynumber: 3.7 Consensus size: 22
119120073 CGATTGTATG
119120083 TTGTTTAAATCGATTC--TTTA
1 TTGTTTAAATCGATTCTTTTTA
* * *
119120103 CTTCTTTAAATTGATT-TTTTTG
1 -TTGTTTAAATCGATTCTTTTTA
* *
119120125 TTGATTGAATCGATTCTTTTTA
1 TTGTTTAAATCGATTCTTTTTA
* *
119120147 TTGTTTGAATCAATTC
1 TTGTTTAAATCGATTC
119120163 ATTGGTGTGT
Statistics
Matches: 46, Mismatches: 10, Indels: 5
0.75 0.16 0.08
Matches are distributed among these distances:
21 24 0.52
22 22 0.48
ACGTcount: A:0.23, C:0.10, G:0.11, T:0.56
Consensus pattern (22 bp):
TTGTTTAAATCGATTCTTTTTA
Found at i:119120414 original size:15 final size:15
Alignment explanation
Indices: 119120394--119120445 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
119120384 ACTACAAAAG
119120394 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
119120409 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
119120428 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
119120443 ATT
1 ATT
119120446 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:119120853 original size:18 final size:19
Alignment explanation
Indices: 119120814--119120854 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
119120804 GTTGTTTATA
*
119120814 TATTGTATAATTCTTGTTT
1 TATTGTATAATTCTTGTAT
119120833 TATTGT-TAATT-TTGCTAT
1 TATTGTATAATTCTTG-TAT
119120851 TATT
1 TATT
119120855 TTGGAGGCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 3 0.15
18 11 0.55
19 6 0.30
ACGTcount: A:0.22, C:0.05, G:0.10, T:0.63
Consensus pattern (19 bp):
TATTGTATAATTCTTGTAT
Found at i:119122331 original size:188 final size:187
Alignment explanation
Indices: 119121979--119122347 Score: 499
Period size: 188 Copynumber: 2.0 Consensus size: 187
119121969 TGAAGGCTAA
* * * * ** *
119121979 ACTTTTTTGAAAGTGTCACACATGCTGTTGAAGGATGCGAGAAGAGAGCTGGATTTGTTTAATAG
1 ACTTCTTTGAAAATATCACACATGCTGCTGAAGGATGCGAGAAGAGAGCTAAATTTGTTTAATAC
* * * *
119122044 TAAGGAGTGCAAGAACGATACTCAAACTTTAAATTTTACCCTTTTTGACATTTTAATTACTATTA
66 TAAGGAGCGCAAGAACGATAATCAAACTTTAAATTTTACCCTTTTTAACATTTTAATTAATATTA
*
119122109 AAAATTATGCAACAACTTTTTACTCTTTTTTTTTTTCAAAATTTTCATTTTAGGTTGG
131 AAAATTATGCAACAACATTTTACTCTTTTTTTTTTT-AAAATTTTCATTTTAGGTTGG
* *
119122167 ACTTCTTTGAAAATATCACACATGCTGCTGAAGGATGTGAGAAGAGAGCTAAATTTGTTTAGTAC
1 ACTTCTTTGAAAATATCACACATGCTGCTGAAGGATGCGAGAAGAGAGCTAAATTTGTTTAATAC
* * * * *
119122232 TAGGGAGCGCCAGGAACTATAATCAAACTTTAAATTTTACCGTTTTTAACATTTTAATTAATTTT
66 TAAGGAGCG-CAAGAACGATAATCAAACTTTAAATTTTACCCTTTTTAACATTTTAATTAATATT
* * *
119122297 AAAAGTTATGCAATAACATTTTA-T-TTTATTTTTTTTAAAATTTTTATTTTA
130 AAAAATTATGCAACAACATTTTACTCTTT-TTTTTTTTAAAATTTTCATTTTA
119122348 AATCATGCAC
Statistics
Matches: 157, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
187 17 0.11
188 72 0.46
189 68 0.43
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.41
Consensus pattern (187 bp):
ACTTCTTTGAAAATATCACACATGCTGCTGAAGGATGCGAGAAGAGAGCTAAATTTGTTTAATAC
TAAGGAGCGCAAGAACGATAATCAAACTTTAAATTTTACCCTTTTTAACATTTTAATTAATATTA
AAAATTATGCAACAACATTTTACTCTTTTTTTTTTTAAAATTTTCATTTTAGGTTGG
Found at i:119125321 original size:17 final size:17
Alignment explanation
Indices: 119125299--119125332 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
119125289 ATCCACTAAT
*
119125299 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
119125316 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
119125333 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:119129960 original size:17 final size:17
Alignment explanation
Indices: 119129938--119129971 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
119129928 ATCCACTAAT
*
119129938 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
119129955 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
119129972 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:119130606 original size:22 final size:20
Alignment explanation
Indices: 119130554--119130611 Score: 53
Period size: 22 Copynumber: 2.6 Consensus size: 20
119130544 ATTTTGAATT
119130554 TTTAAAATTTAATTAAATTTA
1 TTTAAAA-TTAATTAAATTTA
*
119130575 TTTATGAAATTAATTTAATTTAA
1 TTTA--AAATTAATTAAATTT-A
119130598 GTTTAAAATGTAAT
1 -TTTAAAAT-TAAT
119130612 AGTCAAATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
21 4 0.13
22 15 0.48
23 8 0.26
24 4 0.13
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (20 bp):
TTTAAAATTAATTAAATTTA
Found at i:119133276 original size:42 final size:42
Alignment explanation
Indices: 119133230--119133372 Score: 101
Period size: 42 Copynumber: 3.1 Consensus size: 42
119133220 AAAATCAGAG
119133230 TGAATTGAAGATGGAAATTGTGAAATTGAAGCAAAAAAATGA
1 TGAATTGAAGATGGAAATTGTGAAATTGAAGCAAAAAAATGA
* * ** *
119133272 TGAATCTAATGATAAACTGGAAGCTGAGATTGGGATTTTGAAG-AAAAATCAAAG-
1 TGAA--T--TGA-AGA-TGG-A----A-ATTGTGAAATTGAAGCAAAAA--AATGA
119133326 TGAATTGAAGATGGAAATTGTGAAATTGAAGCAAAAAAATGA
1 TGAATTGAAGATGGAAATTGTGAAATTGAAGCAAAAAAATGA
119133368 TGAAT
1 TGAAT
119133373 CTAATGATAA
Statistics
Matches: 75, Mismatches: 10, Indels: 32
0.64 0.09 0.27
Matches are distributed among these distances:
41 3 0.04
42 21 0.28
43 6 0.08
44 1 0.01
46 3 0.04
47 3 0.04
48 6 0.08
49 3 0.04
50 3 0.04
52 1 0.01
53 6 0.08
54 16 0.21
55 3 0.04
ACGTcount: A:0.47, C:0.04, G:0.24, T:0.25
Consensus pattern (42 bp):
TGAATTGAAGATGGAAATTGTGAAATTGAAGCAAAAAAATGA
Found at i:119133318 original size:96 final size:96
Alignment explanation
Indices: 119133193--119133386 Score: 379
Period size: 96 Copynumber: 2.0 Consensus size: 96
119133183 AATACTGAAT
*
119133193 TGGAAGCTGAGATTGGGATTTTGAAGAAAAATCAGAGTGAATTGAAGATGGAAATTGTGAAATTG
1 TGGAAGCTGAGATTGGGATTTTGAAGAAAAATCAAAGTGAATTGAAGATGGAAATTGTGAAATTG
119133258 AAGCAAAAAAATGATGAATCTAATGATAAAC
66 AAGCAAAAAAATGATGAATCTAATGATAAAC
119133289 TGGAAGCTGAGATTGGGATTTTGAAGAAAAATCAAAGTGAATTGAAGATGGAAATTGTGAAATTG
1 TGGAAGCTGAGATTGGGATTTTGAAGAAAAATCAAAGTGAATTGAAGATGGAAATTGTGAAATTG
119133354 AAGCAAAAAAATGATGAATCTAATGATAAAC
66 AAGCAAAAAAATGATGAATCTAATGATAAAC
119133385 TG
1 TG
119133387 ACTGTATTCG
Statistics
Matches: 97, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 97 1.00
ACGTcount: A:0.45, C:0.05, G:0.25, T:0.25
Consensus pattern (96 bp):
TGGAAGCTGAGATTGGGATTTTGAAGAAAAATCAAAGTGAATTGAAGATGGAAATTGTGAAATTG
AAGCAAAAAAATGATGAATCTAATGATAAAC
Found at i:119133646 original size:42 final size:41
Alignment explanation
Indices: 119133570--119133951 Score: 291
Period size: 42 Copynumber: 9.1 Consensus size: 41
119133560 TGAGACACAA
* * * * * *
119133570 GTCACTAAGAGTTTGCTTGAGCTTATGGGAACTGATCAAACG
1 GTCACAAAGAGCTTGCCTGAGCCTATGGG-ACTGACCAAAGG
** **
119133612 GTCACAAAGAGCTTGAATGAGCCTATGGAGACTGACCGGAGG
1 GTCACAAAGAGCTTGCCTGAGCCTATGG-GACTGACCAAAGG
* * * *
119133654 GGCACCAAGAACTTGCCTGAGCCTATAGGGACTGACCAGAGG
1 GTCACAAAGAGCTTGCCTGAGCCTAT-GGGACTGACCAAAGG
* * * * *
119133696 GTCACCAAGAACTTGCCTGGGCCTATGGGGAATGACCAAAGT
1 GTCACAAAGAGCTTGCCTGAGCCTAT-GGGACTGACCAAAGG
* *
119133738 GTCACAAAGAGCTTGCCTGAGCCTATGGGGACTGACCGAAGT
1 GTCACAAAGAGCTTGCCTGAGCCTAT-GGGACTGACCAAAGG
*
119133780 GT-AGCAAAGAGCTTGCCTGAGCCTATAGGGACTGACCAGAGG
1 GTCA-CAAAGAGCTTGCCTGAGCCTAT-GGGACTGACCAAAGG
* * * *
119133822 GTCACCAAAGA-CTTGGCTGAGCCTACGGGGACTGACCAATGT
1 GTCA-CAAAGAGCTTGCCTGAGCCTA-TGGGACTGACCAAAGG
* * * * ** * *
119133864 GTCCCAAAGACCTTGCCTAAGCCAATGGAGACCAACCAACGT
1 GTCACAAAGAGCTTGCCTGAGCCTATGG-GACTGACCAAAGG
* * * * * *
119133906 ATCACAAAGACCTTGCCTAAGCCTATGGAGATTGGCCAAAGT
1 GTCACAAAGAGCTTGCCTGAGCCTATGG-GACTGACCAAAGG
119133948 GTCA
1 GTCA
119133952 TCAACTCTAA
Statistics
Matches: 280, Mismatches: 53, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
41 9 0.03
42 261 0.93
43 10 0.04
ACGTcount: A:0.29, C:0.24, G:0.28, T:0.19
Consensus pattern (41 bp):
GTCACAAAGAGCTTGCCTGAGCCTATGGGACTGACCAAAGG
Found at i:119133795 original size:126 final size:125
Alignment explanation
Indices: 119133612--119133895 Score: 383
Period size: 126 Copynumber: 2.3 Consensus size: 125
119133602 TGATCAAACG
** * *
119133612 GTCACAAAGAGCTTGAATGAGCCTATGGAGACTGACCGGAGGGGCACCAAGAACTTGCCTGAGCC
1 GTCACAAAGAGCTTGCCTGAGCCTATGGAGACTGACCGAAGGAGCA-CAAGAACTTGCCTGAGCC
* *
119133677 TATAGGGACTGACCAGAGGGTCACC-AAGAACTTGCCTGGGCCTATGGGGAATGACCAAAGT
65 TATAGGGACTGACCAGAGGGTCACCAAAG-ACTTGCCTGAGCCTACGGGGAATGACCAAAGT
* *
119133738 GTCACAAAGAGCTTGCCTGAGCCTATGGGGACTGACCGAAGTGTAGCA-AAGAGCTTGCCTGAGC
1 GTCACAAAGAGCTTGCCTGAGCCTATGGAGACTGACCGAAG-G-AGCACAAGAACTTGCCTGAGC
* * *
119133802 CTATAGGGACTGACCAGAGGGTCACCAAAGACTTGGCTGAGCCTACGGGGACTGACCAATGT
64 CTATAGGGACTGACCAGAGGGTCACCAAAGACTTGCCTGAGCCTACGGGGAATGACCAAAGT
* * * *
119133864 GTCCCAAAGACCTTGCCTAAGCCAATGGAGAC
1 GTCACAAAGAGCTTGCCTGAGCCTATGGAGAC
119133896 CAACCAACGT
Statistics
Matches: 139, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
126 132 0.95
127 4 0.03
128 3 0.02
ACGTcount: A:0.29, C:0.24, G:0.30, T:0.17
Consensus pattern (125 bp):
GTCACAAAGAGCTTGCCTGAGCCTATGGAGACTGACCGAAGGAGCACAAGAACTTGCCTGAGCCT
ATAGGGACTGACCAGAGGGTCACCAAAGACTTGCCTGAGCCTACGGGGAATGACCAAAGT
Found at i:119133914 original size:126 final size:126
Alignment explanation
Indices: 119133660--119133931 Score: 352
Period size: 126 Copynumber: 2.2 Consensus size: 126
119133650 GAGGGGCACC
* *
119133660 AAGAACTTGCCTGAGCCTATAGGGACTGACCAGAGGGTCACCAAGAACTTGCCTGGGCCTATGGG
1 AAGAACTTGCCTGAGCCTATAGGGACTGACCAGAGGGTCACCAAGAACTTGCCTGAGCCTACGGG
* * * * ** *
119133725 GAATGACCAAAGTGTCACAAAGAGCTTGCCTGAGCCTATGGGGACTGACCGAAGTGTAGCA
66 GAATGACCAAAGTGTCACAAAGACCTTGCCTAAGCCAATGGAGACCAACCGAAGTATAGCA
* *
119133786 AAGAGCTTGCCTGAGCCTATAGGGACTGACCAGAGGGTCACCAA-AGACTTGGCTGAGCCTACGG
1 AAGAACTTGCCTGAGCCTATAGGGACTGACCAGAGGGTCACCAAGA-ACTTGCCTGAGCCTACGG
* * *
119133850 GGACTGACCAATGTGTCCCAAAGACCTTGCCTAAGCCAATGGAGACCAACC-AACGTATCA-CA
65 GGAATGACCAAAGTGTCACAAAGACCTTGCCTAAGCCAATGGAGACCAACCGAA-GTAT-AGCA
* *
119133912 AAGACCTTGCCTAAGCCTAT
1 AAGAACTTGCCTGAGCCTAT
119133932 GGAGATTGGC
Statistics
Matches: 127, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
125 3 0.02
126 123 0.97
127 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.27, T:0.18
Consensus pattern (126 bp):
AAGAACTTGCCTGAGCCTATAGGGACTGACCAGAGGGTCACCAAGAACTTGCCTGAGCCTACGGG
GAATGACCAAAGTGTCACAAAGACCTTGCCTAAGCCAATGGAGACCAACCGAAGTATAGCA
Found at i:119141277 original size:42 final size:42
Alignment explanation
Indices: 119141214--119141377 Score: 186
Period size: 42 Copynumber: 3.7 Consensus size: 42
119141204 CTTCGTTTTC
** *
119141214 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTCACAT-A
* *
119141257 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTCACATA
119141298 TCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC---AT--C-T-TCACATA
* *
119141347 TCGATGCTATAGCCCAGCTATGGTTTTACAC
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC
119141378 GAATCACATA
Statistics
Matches: 104, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
41 2 0.02
42 63 0.61
43 1 0.01
45 2 0.02
48 1 0.01
49 35 0.34
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTCACATA
Found at i:119141359 original size:49 final size:48
Alignment explanation
Indices: 119141284--119141389 Score: 167
Period size: 49 Copynumber: 2.2 Consensus size: 48
119141274 TATGGTCTTA
*
119141284 CACATATTCATATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
1 CACATA-TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACG-AAT
* *
119141334 CACATATCACATATCGATGCTATAGCCCAGCTATGGTTTTACACGAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
119141382 CACATATC
1 CACATATC
119141390 TCACTGATGT
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
48 11 0.21
49 36 0.68
50 6 0.11
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.29
Consensus pattern (48 bp):
CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
Found at i:119142850 original size:46 final size:44
Alignment explanation
Indices: 119142746--119142853 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
119142736 TGTCTTTGAC
** * * *
119142746 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
119142790 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
119142836 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
119142854 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:119149919 original size:44 final size:45
Alignment explanation
Indices: 119149829--119149956 Score: 134
Period size: 44 Copynumber: 2.8 Consensus size: 45
119149819 ATAGAACAAA
*
119149829 AATGAGCCATGTAAGTCCA-GATTAGAAATATGGCTTTGAAGACAGG
1 AATGAGCCATGTAAGTCCATG-TTA-AAATATGGCATTGAAGACAGG
* * *
119149875 ATTGAGCCATGTAAGTCCATGTT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATGTTAAAATATGGCATTGAAGACAGG
* ** * *
119149919 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTG
1 AATGAGCCATGTAAGTCCATGTTAAA-ATATGGCATTG
119149957 GCAGGATATT
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
44 36 0.53
45 1 0.01
46 30 0.44
47 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATGTTAAAATATGGCATTGAAGACAGG
Found at i:119155838 original size:5 final size:5
Alignment explanation
Indices: 119155812--119155869 Score: 62
Period size: 5 Copynumber: 10.8 Consensus size: 5
119155802 ATGTGTTAAA
* *
119155812 ATATAT ATATT AAATT ATTATT ATATT ATAGT ATATT ATATTAT ATATT
1 ATAT-T ATATT ATATT A-TATT ATATT ATATT ATATT ATA-T-T ATATT
119155861 ATATT ATAT
1 ATATT ATAT
119155870 AAATAAGTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
5 31 0.69
6 10 0.22
7 4 0.09
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (5 bp):
ATATT
Found at i:119155848 original size:10 final size:9
Alignment explanation
Indices: 119155813--119155870 Score: 61
Period size: 8 Copynumber: 6.7 Consensus size: 9
119155803 TGTGTTAAAA
119155813 TATATATAT
1 TATATATAT
*
119155822 TAAAT-TAT
1 TATATATAT
119155830 TAT-TATAT
1 TATATATAT
119155838 TATAGTATAT
1 TATA-TATAT
119155848 TATAT-TA-
1 TATATATAT
119155855 TATATTATAT
1 TATA-TATAT
119155865 TATATA
1 TATATA
119155871 AATAAGTAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
7 5 0.12
8 14 0.34
9 9 0.22
10 13 0.32
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (9 bp):
TATATATAT
Found at i:119155860 original size:12 final size:12
Alignment explanation
Indices: 119155815--119155870 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
119155805 TGTTAAAATA
*
119155815 TATATATTAAAT
1 TATATATTATAT
119155827 TAT-TATTATATT
1 TATATATTATA-T
119155839 ATAGTATATTATAT
1 -TA-TATATTATAT
119155853 TATATATTATAT
1 TATATATTATAT
119155865 TATATA
1 TATATA
119155871 AATAAGTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 6 0.15
12 20 0.51
13 4 0.10
14 2 0.05
15 7 0.18
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (12 bp):
TATATATTATAT
Found at i:119157201 original size:18 final size:19
Alignment explanation
Indices: 119157178--119157216 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
119157168 ATATATAGAT
119157178 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
119157196 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
119157215 AT
1 AT
119157217 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:119157565 original size:39 final size:39
Alignment explanation
Indices: 119157455--119157589 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 39
119157445 GACCTCGAGT
* * * *
119157455 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
119157496 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
119157534 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
119157573 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
119157590 CCATATTGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:119157733 original size:18 final size:19
Alignment explanation
Indices: 119157712--119157752 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
119157702 AATGAAATGA
119157712 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
119157730 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
119157749 GAAA
1 GAAA
119157753 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:119158692 original size:44 final size:45
Alignment explanation
Indices: 119158643--119158745 Score: 120
Period size: 44 Copynumber: 2.3 Consensus size: 45
119158633 TGTCTTTGAC
* * *
119158643 ATGGACTTACATGAAT-TATTCTTGTCTCCAATGCCATA-TATAAT
1 ATGGACTTACATGAATCAATCCTT-TCTCCAAAGCCATATTATAAT
** *
119158687 ATGGACTTACATGGCTCAATCCTTTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGAATCAATCCTTTCTCCAAAGCCATA-TTATAAT
119158733 ATGGACTTACATG
1 ATGGACTTACATG
119158746 GCTCATTTCT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
44 27 0.54
45 5 0.10
46 18 0.36
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (45 bp):
ATGGACTTACATGAATCAATCCTTTCTCCAAAGCCATATTATAAT
Found at i:119160009 original size:31 final size:31
Alignment explanation
Indices: 119159966--119160052 Score: 147
Period size: 31 Copynumber: 2.8 Consensus size: 31
119159956 TGTTACACTT
*
119159966 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
119159997 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
119160028 GTAGCAGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
119160053 TGTTATTTGT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 52 1.00
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:119160129 original size:50 final size:51
Alignment explanation
Indices: 119160028--119160156 Score: 215
Period size: 50 Copynumber: 2.5 Consensus size: 51
119160018 CACTGATCAG
* * * *
119160028 GTAGCAGAAGCTACCACTTTTCACTTGTTATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCCTTGATCAGATAAGT
119160079 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCCTTGATCAGATAAGT
119160129 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
119160157 TGCCATGGTC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
50 49 0.67
51 24 0.33
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCCTTGATCAGATAAGT
Found at i:119161582 original size:13 final size:13
Alignment explanation
Indices: 119161550--119161576 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
119161540 AATTGAACTT
119161550 ACTTGAAGTAAAA
1 ACTTGAAGTAAAA
119161563 ACTTGAAGTAAAA
1 ACTTGAAGTAAAA
119161576 A
1 A
119161577 TATGAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.07, G:0.15, T:0.22
Consensus pattern (13 bp):
ACTTGAAGTAAAA
Found at i:119164058 original size:18 final size:18
Alignment explanation
Indices: 119164031--119164066 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
119164021 TTTTTAAATG
*
119164031 TTAAAAATAACGTAATAT
1 TTAAAAATAACATAATAT
*
119164049 TTAAATATAACATAATAT
1 TTAAAAATAACATAATAT
119164067 AAAATATTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.03, T:0.36
Consensus pattern (18 bp):
TTAAAAATAACATAATAT
Found at i:119164287 original size:59 final size:59
Alignment explanation
Indices: 119164217--119164333 Score: 216
Period size: 59 Copynumber: 2.0 Consensus size: 59
119164207 ACCCTTTTAA
*
119164217 ACTTCAAATAAACTTTTAAACATAGATAGATAATCTAATTCACAAATAAATCGAATATT
1 ACTTCAAATAAACTTTTAAACATAGATAGATAATCTAATTCACAAACAAATCGAATATT
*
119164276 ACTTCAAATAAACTTTTAAACATAGATAGATAATCTAATTCACGAACAAATCGAATAT
1 ACTTCAAATAAACTTTTAAACATAGATAGATAATCTAATTCACAAACAAATCGAATAT
119164334 AAAAAATGGC
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 56 1.00
ACGTcount: A:0.49, C:0.15, G:0.06, T:0.31
Consensus pattern (59 bp):
ACTTCAAATAAACTTTTAAACATAGATAGATAATCTAATTCACAAACAAATCGAATATT
Found at i:119169755 original size:20 final size:20
Alignment explanation
Indices: 119169730--119169770 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
119169720 TTTTTAAGTT
119169730 TCTTTTTTGTAGATAAAAGA
1 TCTTTTTTGTAGATAAAAGA
119169750 TCTTTTTTGTAGATAAAAGA
1 TCTTTTTTGTAGATAAAAGA
119169770 T
1 T
119169771 TCACATGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.15, T:0.46
Consensus pattern (20 bp):
TCTTTTTTGTAGATAAAAGA
Found at i:119175245 original size:21 final size:21
Alignment explanation
Indices: 119175206--119175246 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
119175196 TCCTCAACAA
*
119175206 ATAAATATATAATTTTTTAAT
1 ATAAATATATAATTATTTAAT
119175227 ATAAATAT-TAATATATTTAA
1 ATAAATATATAAT-TATTTAA
119175247 GTAATTATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
ATAAATATATAATTATTTAAT
Found at i:119178974 original size:141 final size:141
Alignment explanation
Indices: 119178694--119178965 Score: 481
Period size: 141 Copynumber: 1.9 Consensus size: 141
119178684 GCCTCCAACT
*
119178694 CCGCCTCCTGCAGCTGCATATCGTAAACCAAGGCGAAGTTATCAAGCTGTTGGCCGGAACGAGAA
1 CCGCCTCCTGCAGCTGCATATCGTAAACCAAGGCGAAGTTATCAAGCTGTTGGCCGGAAAGAGAA
*
119178759 TGTGAATAATACTCAGAAGTTTCATGTTAAGTACGATGGAAGTGAGTCTCCAGCTCCGCAGCCAG
66 TGTGAATAATACTCAAAAGTTTCATGTTAAGTACGATGGAAGTGAGTCTCCAGCTCCGCAGCCAG
119178824 TGAAGCCACCG
131 TGAAGCCACCG
*
119178835 CCGCCTCCTGCAGCTGGATATCGTAAACCAAGGCGAAGTTATCAAGCTGTTGGCCGGAAAGAGAA
1 CCGCCTCCTGCAGCTGCATATCGTAAACCAAGGCGAAGTTATCAAGCTGTTGGCCGGAAAGAGAA
* * * *
119178900 TGTGAATAATGCTCAAAAGTTTCATGTTGAGTACGATGGAAGTGAGTCTCCGGCTCCTCAGCCAG
66 TGTGAATAATACTCAAAAGTTTCATGTTAAGTACGATGGAAGTGAGTCTCCAGCTCCGCAGCCAG
119178965 T
131 T
119178966 AACTCCACCT
Statistics
Matches: 124, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
141 124 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (141 bp):
CCGCCTCCTGCAGCTGCATATCGTAAACCAAGGCGAAGTTATCAAGCTGTTGGCCGGAAAGAGAA
TGTGAATAATACTCAAAAGTTTCATGTTAAGTACGATGGAAGTGAGTCTCCAGCTCCGCAGCCAG
TGAAGCCACCG
Found at i:119179377 original size:3 final size:3
Alignment explanation
Indices: 119179369--119179414 Score: 56
Period size: 3 Copynumber: 15.3 Consensus size: 3
119179359 CACTCAATCC
* * * *
119179369 CCA CCA CCA CCA CCA CCA CCA CCA CCT GCA CCG CCA ACA CCA CCA C
1 CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA CCA C
119179415 TCAGACCGTC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.30, C:0.63, G:0.04, T:0.02
Consensus pattern (3 bp):
CCA
Found at i:119185301 original size:21 final size:21
Alignment explanation
Indices: 119185260--119185304 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
119185250 ATCATTATTC
*
119185260 TAAATAAATCTTGGTAGAAAA
1 TAAATAAATCTTAGTAGAAAA
*
119185281 TAAATAAATTTTAGT-GCAAAA
1 TAAATAAATCTTAGTAG-AAAA
119185302 TAA
1 TAA
119185305 TTGACAACTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 20 0.95
ACGTcount: A:0.53, C:0.04, G:0.11, T:0.31
Consensus pattern (21 bp):
TAAATAAATCTTAGTAGAAAA
Found at i:119188056 original size:20 final size:18
Alignment explanation
Indices: 119188013--119188057 Score: 54
Period size: 20 Copynumber: 2.4 Consensus size: 18
119188003 GAATATATAC
*
119188013 TATTAAATAAATTTTAAT
1 TATTAAATAAATTTTAAA
*
119188031 TTTTAAATTAAAATTTTAAA
1 TATTAAA-T-AAATTTTAAA
119188051 TATTAAA
1 TATTAAA
119188058 ATGTCACATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 6 0.27
19 1 0.05
20 15 0.68
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TATTAAATAAATTTTAAA
Found at i:119188326 original size:30 final size:29
Alignment explanation
Indices: 119188271--119188329 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
119188261 GATGCCATAG
119188271 GTCTTTATACTTTTATTTCTTGAAATTTA
1 GTCTTTATACTTTTATTTCTTGAAATTTA
*
119188300 GTCTTTCTACTTTTCAATTT-TTGAAATTTA
1 GTCTTTATACTTTT--ATTTCTTGAAATTTA
119188330 AGTCAAATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 13 0.48
30 10 0.37
31 4 0.15
ACGTcount: A:0.24, C:0.12, G:0.07, T:0.58
Consensus pattern (29 bp):
GTCTTTATACTTTTATTTCTTGAAATTTA
Found at i:119203068 original size:51 final size:46
Alignment explanation
Indices: 119202979--119203083 Score: 147
Period size: 51 Copynumber: 2.2 Consensus size: 46
119202969 GTATTTTTAT
*
119202979 TTTTAGAAAATTAGTTTTTTTTTTAATATTAAATTTTAGATTTAAC
1 TTTTAGAAAATTAGTTTTTTTTTTAATATTAAATTTTAGATTTAAA
*
119203025 TTTTAGAAATTTAGTTTTTTTATTTTTCAAATATTAAATTTTAGATTTAAA
1 TTTTAGAAAATTAG--TTTTT-TTTTT--AATATTAAATTTTAGATTTAAA
119203076 TTTTAGAA
1 TTTTAGAA
119203084 GTGTTAAAAT
Statistics
Matches: 52, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
46 13 0.25
48 5 0.10
49 5 0.10
51 29 0.56
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.56
Consensus pattern (46 bp):
TTTTAGAAAATTAGTTTTTTTTTTAATATTAAATTTTAGATTTAAA
Found at i:119203076 original size:13 final size:13
Alignment explanation
Indices: 119203058--119203082 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
119203048 TTTTCAAATA
119203058 TTAAATTTTAGAT
1 TTAAATTTTAGAT
119203071 TTAAATTTTAGA
1 TTAAATTTTAGA
119203083 AGTGTTAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (13 bp):
TTAAATTTTAGAT
Found at i:119203461 original size:143 final size:143
Alignment explanation
Indices: 119203252--119203537 Score: 509
Period size: 143 Copynumber: 2.0 Consensus size: 143
119203242 TTTTAACTTA
*
119203252 TTTTATAAATAGTTAATGCAATCTCGTTTGGGTTCAGGCTTCGAATATAAAAATTTGAGTCCAAC
1 TTTTATAAATAGTTAATGCAATCTCGTTTGGGCTCAGGCTTCGAATATAAAAATTTGAGTCCAAC
119203317 TTATATTTAAATCAGAACTGTTTTTCTCCAAATTTGATTTTATTTTTTTGTACATAACGAAGGAA
66 TTATATTTAAATCAGAACTGTTTTTCTCCAAATTTGATTTTATTTTTTTGTACATAACGAAGGAA
119203382 AAACTAATGAAAG
131 AAACTAATGAAAG
* *
119203395 TTTTATAAATAGTTAATGCAATCTCGTTTGGGCTCAGGCTTTGAATATAAAAATTTGAGTTCAAC
1 TTTTATAAATAGTTAATGCAATCTCGTTTGGGCTCAGGCTTCGAATATAAAAATTTGAGTCCAAC
** * *
119203460 TTATATTTAAATTGGAACTGTTTTTCTCCAAATTTGTTTTTATTTTTTTGTACATAATGAAGGAA
66 TTATATTTAAATCAGAACTGTTTTTCTCCAAATTTGATTTTATTTTTTTGTACATAACGAAGGAA
119203525 AAACTAATGAAAG
131 AAACTAATGAAAG
119203538 CTTGCGAGGC
Statistics
Matches: 136, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
143 136 1.00
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (143 bp):
TTTTATAAATAGTTAATGCAATCTCGTTTGGGCTCAGGCTTCGAATATAAAAATTTGAGTCCAAC
TTATATTTAAATCAGAACTGTTTTTCTCCAAATTTGATTTTATTTTTTTGTACATAACGAAGGAA
AAACTAATGAAAG
Found at i:119205102 original size:3 final size:3
Alignment explanation
Indices: 119205094--119205129 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
119205084 CTCCATGATC
* *
119205094 ATT ATT ATT GTT ATT ATT ATT ACT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
119205130 TAATCGTTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:119206117 original size:3 final size:3
Alignment explanation
Indices: 119206109--119206169 Score: 104
Period size: 3 Copynumber: 20.3 Consensus size: 3
119206099 GCCGCCATGG
*
119206109 CTT CTT CTT CTT CTT CTT CTT CTT TTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
*
119206157 CTT CAT CTT CTT C
1 CTT CTT CTT CTT C
119206170 CTCGTGTTAT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.02, C:0.33, G:0.00, T:0.66
Consensus pattern (3 bp):
CTT
Found at i:119216357 original size:24 final size:26
Alignment explanation
Indices: 119216310--119216357 Score: 73
Period size: 24 Copynumber: 1.9 Consensus size: 26
119216300 TGATTTTTTT
119216310 GTTGTTTTTGTTTGGTTCTTTGGGGG
1 GTTGTTTTTGTTTGGTTCTTTGGGGG
*
119216336 GTTGTTTTT-TTT-TTTCTTTGGG
1 GTTGTTTTTGTTTGGTTCTTTGGG
119216358 TTAATTTTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 9 0.43
25 3 0.14
26 9 0.43
ACGTcount: A:0.00, C:0.04, G:0.31, T:0.65
Consensus pattern (26 bp):
GTTGTTTTTGTTTGGTTCTTTGGGGG
Done.