Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 361 of 362
Found at i:119226865 original size:19 final size:20
Alignment explanation
Indices: 119226812--119226883 Score: 69
Period size: 19 Copynumber: 3.6 Consensus size: 20
119226802 ATATTATTTT
* *
119226812 TTATAATTTATTAGAACTTG
1 TTATAATTTATTATAAGTTG
*
119226832 CTT-TGAATTTTTTATAAGTT-
1 -TTAT-AATTTATTATAAGTTG
*
119226852 TTATAATTTATTAT-TGTTG
1 TTATAATTTATTATAAGTTG
119226871 TTATAATTTATTA
1 TTATAATTTATTA
119226884 CATCTTTATA
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
18 3 0.07
19 24 0.56
20 2 0.05
21 14 0.33
ACGTcount: A:0.31, C:0.03, G:0.08, T:0.58
Consensus pattern (20 bp):
TTATAATTTATTATAAGTTG
Found at i:119238596 original size:12 final size:12
Alignment explanation
Indices: 119238579--119238627 Score: 53
Period size: 12 Copynumber: 4.1 Consensus size: 12
119238569 TTGACCCTAT
*
119238579 ATACATACATAC
1 ATACATACACAC
*
119238591 ATACATGCACAC
1 ATACATACACAC
*
119238603 ATACACACACAC
1 ATACATACACAC
* *
119238615 ACACACACACAC
1 ATACATACACAC
119238627 A
1 A
119238628 CACACTTATG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.49, C:0.37, G:0.02, T:0.12
Consensus pattern (12 bp):
ATACATACACAC
Found at i:119238609 original size:8 final size:8
Alignment explanation
Indices: 119238579--119238632 Score: 54
Period size: 8 Copynumber: 6.8 Consensus size: 8
119238569 TTGACCCTAT
*
119238579 ATACATAC
1 ATACACAC
*
119238587 ATACATAC
1 ATACACAC
*
119238595 ATGCACAC
1 ATACACAC
119238603 ATACACAC
1 ATACACAC
*
119238611 ACACACAC
1 ATACACAC
*
119238619 ACACACAC
1 ATACACAC
*
119238627 ACACAC
1 ATACAC
119238633 TTATGTATAT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 42 1.00
ACGTcount: A:0.48, C:0.39, G:0.02, T:0.11
Consensus pattern (8 bp):
ATACACAC
Found at i:119238610 original size:2 final size:2
Alignment explanation
Indices: 119238598--119238632 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
119238588 TACATACATG
*
119238598 CA CA CA TA CA CA CA CA CA CA CA CA CA CA CA CA CA C
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
119238633 TTATGTATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.49, G:0.00, T:0.03
Consensus pattern (2 bp):
CA
Found at i:119242841 original size:6 final size:6
Alignment explanation
Indices: 119242830--119242858 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
119242820 CCCATTTTTT
119242830 TAATTA TAATTA TAATTA TAATTA TAATT
1 TAATTA TAATTA TAATTA TAATTA TAATT
119242859 TTACCGATGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TAATTA
Found at i:119243657 original size:21 final size:22
Alignment explanation
Indices: 119243619--119243659 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
119243609 TACTTTTATT
*
119243619 AATTTAAAATTAAAATTTTTAG
1 AATTTAAAATGAAAATTTTTAG
*
119243641 AATTT-AAATGAATATTTTT
1 AATTTAAAATGAAAATTTTT
119243660 TCATTTTAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (22 bp):
AATTTAAAATGAAAATTTTTAG
Found at i:119249080 original size:44 final size:44
Alignment explanation
Indices: 119249032--119249116 Score: 170
Period size: 44 Copynumber: 1.9 Consensus size: 44
119249022 CAGAGTTTGA
119249032 AATTTTAAAATTTGAAAAGAATAAGAATTAAAATTGACCAAATT
1 AATTTTAAAATTTGAAAAGAATAAGAATTAAAATTGACCAAATT
119249076 AATTTTAAAATTTGAAAAGAATAAGAATTAAAATTGACCAA
1 AATTTTAAAATTTGAAAAGAATAAGAATTAAAATTGACCAA
119249117 GGGGGTAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.55, C:0.05, G:0.09, T:0.31
Consensus pattern (44 bp):
AATTTTAAAATTTGAAAAGAATAAGAATTAAAATTGACCAAATT
Found at i:119249112 original size:22 final size:23
Alignment explanation
Indices: 119249036--119249110 Score: 84
Period size: 22 Copynumber: 3.3 Consensus size: 23
119249026 GTTTGAAATT
119249036 TTAAAATTTGAAAAGAATAAGAA
1 TTAAAATTTGAAAAGAATAAGAA
* * **
119249059 TTAAAA-TTGACCAA-ATTAA-TT
1 TTAAAATTTGA-AAAGAATAAGAA
119249080 TTAAAATTTGAAAAGAATAAGAA
1 TTAAAATTTGAAAAGAATAAGAA
119249103 TTAAAATT
1 TTAAAATT
119249111 GACCAAGGGG
Statistics
Matches: 40, Mismatches: 8, Indels: 8
0.71 0.14 0.14
Matches are distributed among these distances:
21 8 0.20
22 16 0.40
23 16 0.40
ACGTcount: A:0.56, C:0.03, G:0.09, T:0.32
Consensus pattern (23 bp):
TTAAAATTTGAAAAGAATAAGAA
Found at i:119252523 original size:192 final size:192
Alignment explanation
Indices: 119252169--119252567 Score: 559
Period size: 192 Copynumber: 2.1 Consensus size: 192
119252159 CCACCTTGCT
* *
119252169 CAACACTAAGCACGCTACTTGCTAGTTCATTAATCAATGATCCGATCTGTTCATTGGAATTGTGA
1 CAACACTAAGCATGCTACTTGCTAGTTCATTAATCAATGATCCGATCTGTTCACTGGAATTGTGA
* * *
119252234 TTGTAAACCGATGCGTGAATGATGTTATTCATTATGATTTGAAGCGTCGGAAACTCTTTAGTTTG
66 TTGTAAACCGATGCGTGAATGATGTTACTCATTATGATTTGAAGAGTCGGAAACTCTTTACTTTG
* * * *
119252299 ATGCTTAGTCTGTTTCGGTATGAGAGGAATTGTTGAAAAACTGAATCAGTGACTGCATCGAC
131 ATGCATAGTCTGTTTCGGTACGAGAAGAATTGTTGAAAAACTGAATCAGTAACTGCATCGAC
* *
119252361 CAACACTGAGCATGCTACTTGTTAGTTCAATT-ATCAATGATCCGATCTGTTCACTGGAATTGTG
1 CAACACTAAGCATGCTACTTGCTAGTTC-ATTAATCAATGATCCGATCTGTTCACTGGAATTGTG
* * * * * *
119252425 ATTGTAAATCGATGCGTGAATGATGTTACTCTTTATGGTTTGAAGAGTCTGAAGCTTTTTACTTT
65 ATTGTAAACCGATGCGTGAATGATGTTACTCATTATGATTTGAAGAGTCGGAAACTCTTTACTTT
* * * * * *
119252490 GATGCATATTTTGTTTCTGTACGAGAAGAATTGTTGAAAAATTGAATCAGTAACTGCATCTAT
130 GATGCATAGTCTGTTTCGGTACGAGAAGAATTGTTGAAAAACTGAATCAGTAACTGCATCGAC
119252553 CAACAC-ACAGCATGC
1 CAACACTA-AGCATGC
119252568 AAATGCGTAA
Statistics
Matches: 181, Mismatches: 24, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
192 178 0.98
193 3 0.02
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.35
Consensus pattern (192 bp):
CAACACTAAGCATGCTACTTGCTAGTTCATTAATCAATGATCCGATCTGTTCACTGGAATTGTGA
TTGTAAACCGATGCGTGAATGATGTTACTCATTATGATTTGAAGAGTCGGAAACTCTTTACTTTG
ATGCATAGTCTGTTTCGGTACGAGAAGAATTGTTGAAAAACTGAATCAGTAACTGCATCGAC
Found at i:119253130 original size:39 final size:39
Alignment explanation
Indices: 119253076--119253153 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
119253066 AAAAAATGAG
*
119253076 CAAATTAGTCTTTATCATTACATTAAAAAGCAAATTGAT
1 CAAATTAGTCTTTATCATTACATCAAAAAGCAAATTGAT
*
119253115 CAAATTAGTCTTTATCGTTACATCAAAAAGCAAATTGAT
1 CAAATTAGTCTTTATCATTACATCAAAAAGCAAATTGAT
119253154 TATTCTTTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.35
Consensus pattern (39 bp):
CAAATTAGTCTTTATCATTACATCAAAAAGCAAATTGAT
Found at i:119256436 original size:25 final size:25
Alignment explanation
Indices: 119256389--119256436 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
119256379 ATCACAATTC
* *
119256389 AATAATTAATATATGATTTTAAAAA
1 AATAATTAATATATGAGTATAAAAA
119256414 AATAA-TAATATATTGAGTATAAA
1 AATAATTAATATA-TGAGTATAAA
119256437 TACATACATC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (25 bp):
AATAATTAATATATGAGTATAAAAA
Found at i:119277922 original size:20 final size:20
Alignment explanation
Indices: 119277895--119277940 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
119277885 AAAAACATCT
* *
119277895 TTTG-AATGCTTTGCAAATC
1 TTTGAAATGCTTTGAAAATA
*
119277914 TTTGAAATGTTTTGAAAATA
1 TTTGAAATGCTTTGAAAATA
119277934 TTTGAAA
1 TTTGAAA
119277941 ATATTTGAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.43
Consensus pattern (20 bp):
TTTGAAATGCTTTGAAAATA
Found at i:119277941 original size:10 final size:10
Alignment explanation
Indices: 119277924--119277949 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
119277914 TTTGAAATGT
119277924 TTTGAAAATA
1 TTTGAAAATA
119277934 TTTGAAAATA
1 TTTGAAAATA
119277944 TTTGAA
1 TTTGAA
119277950 CACTAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.12, T:0.42
Consensus pattern (10 bp):
TTTGAAAATA
Found at i:119278050 original size:23 final size:22
Alignment explanation
Indices: 119278002--119278050 Score: 71
Period size: 23 Copynumber: 2.2 Consensus size: 22
119277992 CAGTAACAAT
* *
119278002 TTCTCAATTTAGGGTTCAGCCT
1 TTCTCAATTTAGGGGTCAGCCC
119278024 TTCTCAATTTAGGGGGTCAGCCC
1 TTCTCAATTTA-GGGGTCAGCCC
119278047 TTCT
1 TTCT
119278051 TCCTTTTTCG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 11 0.46
23 13 0.54
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.39
Consensus pattern (22 bp):
TTCTCAATTTAGGGGTCAGCCC
Found at i:119281301 original size:13 final size:13
Alignment explanation
Indices: 119281278--119281319 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
119281268 ATAAACATGT
*
119281278 TATTTTCAATTTA
1 TATTTTTAATTTA
* *
119281291 TCTTTTTAATTAA
1 TATTTTTAATTTA
119281304 TATTTTTAATTTA
1 TATTTTTAATTTA
119281317 TAT
1 TAT
119281320 AATAAAATAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (13 bp):
TATTTTTAATTTA
Found at i:119281338 original size:19 final size:19
Alignment explanation
Indices: 119281314--119281351 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
119281304 TATTTTTAAT
119281314 TTATATAATAAAATAATAA
1 TTATATAATAAAATAATAA
* *
119281333 TTATATAATTACATAATAA
1 TTATATAATAAAATAATAA
119281352 AAATATATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (19 bp):
TTATATAATAAAATAATAA
Found at i:119281357 original size:19 final size:19
Alignment explanation
Indices: 119281316--119281358 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
119281306 TTTTTAATTT
**
119281316 ATATAATAAAATAATAATT
1 ATATAATAAAATAATAAAA
* *
119281335 ATATAATTACATAATAAAA
1 ATATAATAAAATAATAAAA
119281354 ATATA
1 ATATA
119281359 TTTGATATAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (19 bp):
ATATAATAAAATAATAAAA
Found at i:119282320 original size:23 final size:22
Alignment explanation
Indices: 119282278--119282328 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
119282268 TATTATTTTC
*
119282278 ATTATTATTTGAGATATTTAGTT
1 ATTATTATTTGAGATATTTA-CT
*
119282301 ATTATTATTTGATAGT-TTTACT
1 ATTATTATTTGAGA-TATTTACT
119282323 ATTATT
1 ATTATT
119282329 TAATTTTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 7 0.28
23 17 0.68
24 1 0.04
ACGTcount: A:0.29, C:0.02, G:0.10, T:0.59
Consensus pattern (22 bp):
ATTATTATTTGAGATATTTACT
Found at i:119285574 original size:4 final size:4
Alignment explanation
Indices: 119285565--119285606 Score: 84
Period size: 4 Copynumber: 10.5 Consensus size: 4
119285555 TTCAACAGTT
119285565 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TA
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TA
119285607 AGCATGTATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 38 1.00
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:119303297 original size:29 final size:30
Alignment explanation
Indices: 119303254--119303325 Score: 110
Period size: 29 Copynumber: 2.4 Consensus size: 30
119303244 AATTCCACTA
*
119303254 AAAAATGATTAGTTTTAATTTTAGTCAAA-
1 AAAAATAATTAGTTTTAATTTTAGTCAAAT
*
119303283 ATAAATAATTAGTTTTAATTTTAGTCAAAT
1 AAAAATAATTAGTTTTAATTTTAGTCAAAT
*
119303313 AAAAAAAATTAGT
1 AAAAATAATTAGT
119303326 GAAGGAAACA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
29 27 0.71
30 11 0.29
ACGTcount: A:0.49, C:0.03, G:0.08, T:0.40
Consensus pattern (30 bp):
AAAAATAATTAGTTTTAATTTTAGTCAAAT
Found at i:119312899 original size:6 final size:6
Alignment explanation
Indices: 119312888--119312915 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
119312878 TGAATTCAGA
119312888 ATTTGG ATTTGG ATTTGG ATTTGG ATTT
1 ATTTGG ATTTGG ATTTGG ATTTGG ATTT
119312916 CAACAGTGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.00, G:0.29, T:0.54
Consensus pattern (6 bp):
ATTTGG
Found at i:119325339 original size:16 final size:17
Alignment explanation
Indices: 119325315--119325349 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
119325305 TTAATTATTC
*
119325315 AAATTATTTTAAA-TTT
1 AAATAATTTTAAACTTT
119325331 AAATAATTTTAAACTTT
1 AAATAATTTTAAACTTT
119325348 AA
1 AA
119325350 TTTTGACCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (17 bp):
AAATAATTTTAAACTTT
Found at i:119330220 original size:17 final size:17
Alignment explanation
Indices: 119330198--119330231 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
119330188 ATCCACTAAT
*
119330198 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
119330215 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
119330232 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:119334860 original size:17 final size:17
Alignment explanation
Indices: 119334838--119334871 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
119334828 ATCCACTAAT
*
119334838 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
119334855 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
119334872 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:119355975 original size:144 final size:140
Alignment explanation
Indices: 119355713--119355987 Score: 320
Period size: 144 Copynumber: 1.9 Consensus size: 140
119355703 TCGAATTGCT
* * * *
119355713 ATTGAGCTCCTTGTCATTATGGTTTTAGTCCCTCGATATTTGGTAGTTACATTGGGCTCGAATTT
1 ATTGAGCTCCTTATCATTATGGTTTTAGTCCCTCGATATTTAGTAGTTACATTAGGCTCGAATTC
* * * * * *
119355778 TTAAACGAGGATGATGTTTTCTCAACGTTATTTTTTGTATTCATAAGACTTGAACTCTAAACTTA
66 CTAAACGAGGATAAAGTTCTCCCAACGTTATTTTTTG-ATTCACAAGACTTGAACTCTAAACTTA
119355843 GTTTAAAGAAC
130 GTTTAAAGAAC
* * *
119355854 ATTGAGCTCTTTATCATTATGGTTTTAGCCATCGCTTGATATTTAGTAGTTACATTAGGCTCGAA
1 ATTGAGCTCCTTATCATTATGGTTTTAG---TCCCTCGATATTTAGTAGTTACATTAGGCTCGAA
* * *
119355919 TTCCTAAATGAGCG-TAAAGTTCTCCCAACGTTCTTTTTCTCG-TTCACAAGAGTTGAACTCTAA
63 TTCCTAAACGAG-GATAAAGTTCTCCCAACGTTATTTTT-T-GATTCACAAGACTTGAACTCTAA
*
119355982 ATTTAG
125 ACTTAG
119355988 AGTATTGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
141 26 0.23
144 82 0.74
145 2 0.02
146 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (140 bp):
ATTGAGCTCCTTATCATTATGGTTTTAGTCCCTCGATATTTAGTAGTTACATTAGGCTCGAATTC
CTAAACGAGGATAAAGTTCTCCCAACGTTATTTTTTGATTCACAAGACTTGAACTCTAAACTTAG
TTTAAAGAAC
Found at i:119363055 original size:82 final size:82
Alignment explanation
Indices: 119362883--119363058 Score: 284
Period size: 82 Copynumber: 2.2 Consensus size: 82
119362873 TTTTCCCTCT
* *
119362883 TTTTG-TTGAATATGAATTACATGGACTTAAAGATCTTGTTTTTATTTAATGTGTTGTGATATTT
1 TTTTGATTGAATATGAATTACATGGACTTAAAGATCTTGTTTTTATTTAATGTATGGTGATATTT
119362947 TTTCTGGGTTTTGCTTG
66 TTTCTGGGTTTTGCTTG
* * *
119362964 TTTTGATTGAGTATGCATTACTTGGACTTAAAGATCTTGTTTTTATTTAATGTATGGTGATATTT
1 TTTTGATTGAATATGAATTACATGGACTTAAAGATCTTGTTTTTATTTAATGTATGGTGATATTT
119363029 TTTCTGGGTTTTGCTTG
66 TTTCTGGGTTTTGCTTG
119363046 -TTTGAATTGAATA
1 TTTTG-ATTGAATA
119363059 CTGTTACGTA
Statistics
Matches: 87, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
81 9 0.10
82 78 0.90
ACGTcount: A:0.22, C:0.06, G:0.20, T:0.52
Consensus pattern (82 bp):
TTTTGATTGAATATGAATTACATGGACTTAAAGATCTTGTTTTTATTTAATGTATGGTGATATTT
TTTCTGGGTTTTGCTTG
Found at i:119365475 original size:29 final size:29
Alignment explanation
Indices: 119365433--119365488 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
119365423 GGCTTCTGTG
119365433 ATACTTTTACTGTAATTTATATTATATGA
1 ATACTTTTACTGTAATTTATATTATATGA
119365462 ATACTTTTACTGTAATTTATATTATAT
1 ATACTTTTACTGTAATTTATATTATAT
119365489 TTTAAAGTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.34, C:0.07, G:0.05, T:0.54
Consensus pattern (29 bp):
ATACTTTTACTGTAATTTATATTATATGA
Found at i:119370503 original size:51 final size:51
Alignment explanation
Indices: 119370406--119370517 Score: 120
Period size: 51 Copynumber: 2.2 Consensus size: 51
119370396 TGTTGATTGG
* ** *
119370406 ATGTGCAAATATTGTAGGTTAAATTTGTTAAATCATGATTACATTGAGGAA
1 ATGTGCAAATATTGTAGGTTAAATTTGTTAAATAATGACCAAATTGAGGAA
* * * *
119370457 ATGTGTAAATGTTGTGGGTTAAATTTGTTAAATTAAT-ACCAAATTGA-CATA
1 ATGTGCAAATATTGTAGGTTAAATTTGTTAAA-TAATGACCAAATTGAGGA-A
119370508 ATGTGCAAAT
1 ATGTGCAAAT
119370518 TTTAAGAGAT
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
50 1 0.02
51 46 0.92
52 3 0.06
ACGTcount: A:0.38, C:0.06, G:0.19, T:0.38
Consensus pattern (51 bp):
ATGTGCAAATATTGTAGGTTAAATTTGTTAAATAATGACCAAATTGAGGAA
Found at i:119370726 original size:22 final size:22
Alignment explanation
Indices: 119370684--119370726 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
119370674 TAATAAAATA
* *
119370684 ATATGTTTTTAATTTATATTTT
1 ATATCTTTTTAATTTAAATTTT
119370706 ATATCTTTTATAA-TTAAATTT
1 ATATCTTTT-TAATTTAAATTT
119370727 AAAATATTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (22 bp):
ATATCTTTTTAATTTAAATTTT
Found at i:119371727 original size:8 final size:8
Alignment explanation
Indices: 119371716--119371793 Score: 58
Period size: 8 Copynumber: 10.1 Consensus size: 8
119371706 AATGTAAACA
119371716 ATTAAAAT
1 ATTAAAAT
119371724 ATTAAAA-
1 ATTAAAAT
*
119371731 ATT-ATAT
1 ATTAAAAT
119371738 A-TAAAATT
1 ATTAAAA-T
*
119371746 ATAATAAAT
1 ATTA-AAAT
*
119371755 A-AAAAAT
1 ATTAAAAT
119371762 ATTAAAAT
1 ATTAAAAT
119371770 A-TAAAAT
1 ATTAAAAT
*
119371777 ATTTAAAT
1 ATTAAAAT
*
119371785 ATTTAAAT
1 ATTAAAAT
119371793 A
1 A
119371794 AAATAAGATA
Statistics
Matches: 58, Mismatches: 5, Indels: 14
0.75 0.06 0.18
Matches are distributed among these distances:
6 3 0.05
7 18 0.31
8 31 0.53
9 3 0.05
10 3 0.05
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
ATTAAAAT
Found at i:119371786 original size:15 final size:15
Alignment explanation
Indices: 119371736--119371786 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
119371726 TAAAAATTAT
*
119371736 ATATAAAATTATAATAA
1 ATATAAAA-TAT-TTAA
* *
119371753 ATAAAAAATATTAAA
1 ATATAAAATATTTAA
119371768 ATATAAAATATTTAA
1 ATATAAAATATTTAA
119371783 ATAT
1 ATAT
119371787 TTAAATAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
15 19 0.66
16 3 0.10
17 7 0.24
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
ATATAAAATATTTAA
Found at i:119371799 original size:26 final size:25
Alignment explanation
Indices: 119371758--119371834 Score: 61
Period size: 26 Copynumber: 3.2 Consensus size: 25
119371748 AATAAATAAA
*
119371758 AAATA-TT-AAAATATAAAATATTT
1 AAATATTTAAAAAAATAAAATATTT
* **
119371781 AAATATTTAAATAAAATAAGATAAAT
1 AAATATTTAAA-AAAATAAAATATTT
* * *
119371807 ATATATTTAAAACAATATAA-ATTT
1 AAATATTTAAAAAAATAAAATATTT
119371831 AAAT
1 AAAT
119371835 TAACCATTTA
Statistics
Matches: 40, Mismatches: 11, Indels: 5
0.71 0.20 0.09
Matches are distributed among these distances:
23 5 0.12
24 7 0.17
25 8 0.20
26 20 0.50
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.36
Consensus pattern (25 bp):
AAATATTTAAAAAAATAAAATATTT
Found at i:119376043 original size:130 final size:125
Alignment explanation
Indices: 119375683--119376031 Score: 416
Period size: 125 Copynumber: 2.8 Consensus size: 125
119375673 CAATTAACAG
* * * * *
119375683 AAACTTCAAACTAAGAGAATCCAACCGAAACAAATTCTTGAAGCTATAAATACACTAATGAAATG
1 AAACATCAAGCTAAGAGCATCCAACCAAAACAAATTCTTGAAGCTATAAATACAATAATGAAATG
** * * **
119375748 CAAACAATGAAAGCTTTACCGTAAAGCACAAATCATAACATGGTCCACTTTGGGGGGAAA
66 CAAACAACAAAAGCTTTACCGTAAAGCACAAATCATAACACGGTCCACTTCGGGGAAAAA
* * *
119375808 AAACATCAAGCTAAGAGCATCCAACCAAAACAAATTCATGTAGCTATAAGTA-AACTAATGAAAT
1 AAACATCAAGCTAAGAGCATCCAACCAAAACAAATTCTTGAAGCTATAAATACAA-TAATGAAAT
* *
119375872 GCAAACAACACAAGCTTTTACCGTAAAGCGCAAATCATAACACGGTCCACTTCGGGGAAAAA
65 GCAAACAACAAAAGC-TTTACCGTAAAGCACAAATCATAACACGGTCCACTTCGGGGAAAAA
* * *
119375934 ACAACATCAAGCTAAGAGCAT-CATCCACATCTAAGAAATTCTTCAAGCTATGAAATACAATAAT
1 A-AACATCAAGCTAAGAGCATCCAACCA-A---AACAAATTCTTGAAGCTAT-AAATACAATAAT
* *
119375998 -AAATGCAAACAACAAAAGCTTTACCTTTAAGCAC
60 GAAATGCAAACAACAAAAGCTTTACCGTAAAGCAC
119376032 GAACCAATAA
Statistics
Matches: 189, Mismatches: 26, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
124 1 0.01
125 66 0.35
126 47 0.25
127 20 0.11
129 12 0.06
130 33 0.17
131 8 0.04
132 2 0.01
ACGTcount: A:0.45, C:0.21, G:0.13, T:0.20
Consensus pattern (125 bp):
AAACATCAAGCTAAGAGCATCCAACCAAAACAAATTCTTGAAGCTATAAATACAATAATGAAATG
CAAACAACAAAAGCTTTACCGTAAAGCACAAATCATAACACGGTCCACTTCGGGGAAAAA
Found at i:119378889 original size:27 final size:29
Alignment explanation
Indices: 119378839--119378903 Score: 71
Period size: 27 Copynumber: 2.3 Consensus size: 29
119378829 TTTTTTACAA
* * *
119378839 ATATATTAAATTATTTATATAATTTTATT
1 ATATATTATATTATTTATAAAATTGTATT
119378868 ATATATTATA-TATTTA-AAAATTGTATT
1 ATATATTATATTATTTATAAAATTGTATT
* *
119378895 TTCTATTAT
1 ATATATTAT
119378904 TTAAATGGCA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 16 0.52
28 6 0.19
29 9 0.29
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (29 bp):
ATATATTATATTATTTATAAAATTGTATT
Found at i:119381236 original size:16 final size:16
Alignment explanation
Indices: 119381215--119381248 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
119381205 ATCATTGACA
119381215 GTTAATTACATAATGC
1 GTTAATTACATAATGC
119381231 GTTAATTACATAATGC
1 GTTAATTACATAATGC
119381247 GT
1 GT
119381249 GGGCTTTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (16 bp):
GTTAATTACATAATGC
Found at i:119385671 original size:15 final size:15
Alignment explanation
Indices: 119385651--119385801 Score: 57
Period size: 15 Copynumber: 10.0 Consensus size: 15
119385641 ATTAATTTTG
*
119385651 ATATTTTCTATTATT
1 ATATTTACTATTATT
119385666 ATATTTACTATTATT
1 ATATTTACTATTATT
* *
119385681 -TATTGAC-ATCTCTT
1 ATATTTACTAT-TATT
* *
119385695 CTA-TTATTATTATT
1 ATATTTACTATTATT
*
119385709 AT-TATTATTATTATT
1 ATAT-TTACTATTATT
*
119385724 AT-TATTATTATGTATT
1 ATAT-TTACTAT-TATT
* *
119385740 AGTATATACTCTTATT
1 A-TATTTACTATTATT
*
119385756 ATGTATGTA-TATATATAT
1 A--TATTTACTAT-TAT-T
*
119385774 ATATTTAATATT-TT
1 ATATTTACTATTATT
*
119385788 TTATTTACT-TTATT
1 ATATTTACTATTATT
119385802 TTAATATTTT
Statistics
Matches: 108, Mismatches: 15, Indels: 27
0.72 0.10 0.18
Matches are distributed among these distances:
13 4 0.04
14 25 0.23
15 41 0.38
16 18 0.17
17 17 0.16
18 3 0.03
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.60
Consensus pattern (15 bp):
ATATTTACTATTATT
Found at i:119385704 original size:3 final size:3
Alignment explanation
Indices: 119385696--119385740 Score: 81
Period size: 3 Copynumber: 14.7 Consensus size: 3
119385686 ACATCTCTTC
119385696 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT GTAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TA
119385741 GTATATACTC
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 38 0.93
4 3 0.07
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:119385778 original size:23 final size:21
Alignment explanation
Indices: 119385699--119385778 Score: 80
Period size: 23 Copynumber: 3.9 Consensus size: 21
119385689 TCTCTTCTAT
119385699 TATTAT-TAT-TATTATTAT-
1 TATTATATATATATTATTATG
119385717 TATTAT-TAT-TATTATTATG
1 TATTATATATATATTATTATG
*
119385736 TATTAGTATATACTCTTATTATG
1 TATTA-TATATA-TATTATTATG
119385759 TATGTATATATATATATATT
1 TAT-TATATATATAT-TATT
119385779 TAATATTTTT
Statistics
Matches: 53, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
18 18 0.34
19 5 0.09
20 1 0.02
21 3 0.06
22 2 0.04
23 22 0.42
24 2 0.04
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.59
Consensus pattern (21 bp):
TATTATATATATATTATTATG
Found at i:119386296 original size:14 final size:14
Alignment explanation
Indices: 119386279--119386310 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
119386269 TTTTATAATA
*
119386279 TTTCATGTATATAT
1 TTTCATGCATATAT
119386293 TTTCATGCATATAT
1 TTTCATGCATATAT
119386307 TTTC
1 TTTC
119386311 TTTTACATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.25, C:0.12, G:0.06, T:0.56
Consensus pattern (14 bp):
TTTCATGCATATAT
Found at i:119399850 original size:20 final size:20
Alignment explanation
Indices: 119399825--119399874 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
119399815 TGGCTTAAAA
119399825 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
119399845 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
119399862 GTGGTAGTGGATT
1 TTGGTAGTGGATT
119399875 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:119404479 original size:20 final size:20
Alignment explanation
Indices: 119404454--119404503 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
119404444 TGGCTTAAAA
119404454 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
119404474 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
119404491 GTGGTAGTGGATT
1 TTGGTAGTGGATT
119404504 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:119416821 original size:29 final size:30
Alignment explanation
Indices: 119416775--119416843 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
119416765 GTTAATAATT
*
119416775 TATAAGAATTGAATC-AAATTAAAATTCCATA
1 TATAA-AATTGAATCAAAATCAAAATT-CATA
*
119416806 TATAAAATTGTA-CAAAATCAAAATTCATA
1 TATAAAATTGAATCAAAATCAAAATTCATA
*
119416835 TATACAATT
1 TATAAAATT
119416844 TCACATTAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
29 13 0.38
30 16 0.47
31 5 0.15
ACGTcount: A:0.52, C:0.10, G:0.04, T:0.33
Consensus pattern (30 bp):
TATAAAATTGAATCAAAATCAAAATTCATA
Found at i:119419300 original size:2 final size:2
Alignment explanation
Indices: 119419293--119419317 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
119419283 CATTACCAAA
119419293 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
119419318 TTAAAAATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:119419830 original size:314 final size:315
Alignment explanation
Indices: 119419255--119419888 Score: 1026
Period size: 314 Copynumber: 2.0 Consensus size: 315
119419245 GGAGATAATT
* *
119419255 TATTTTTTGAATCCTTGCTGAAAACCAACATTACCAAATGTGTGTGTGTGTGTGTGTGTGTGTTT
1 TATTTTTTGAATCCTTGCTGAAAACCAACATGACCAAATGTGAGTGTGTGTGTGTGTGTGTG--T
119419320 AAAAATGTTATAATAGAGCTTGAACTTCCATAATCAAGTTATTATGCATGGTGAAACACGAATCA
64 AAAAATGTTATAATAGAGCTTGAACTTCCATAATCAAGTTATTATGCATGGTGAAACACGAATCA
*
119419385 CCATATAGAATAAATGGATCCACAATGGTGATATGATTCCAAGAACCAAACATGGCATGCAGTGT
129 CCATATAGAATAAATGGATCCACAATGGTGATATGATTCCAAGAACCAAACATGGCATGCAGTGC
* * *
119419450 ATGATAACCCTGGATTTGACAATCAACAATGTAAAACATAAACCTGCCATGACGTCTAGGCTCCT
194 ATAATAACCCTGGAGTTGACAATCAACAATGTAAAACATAAACCTGCCATGACGTCTAGACTCCT
* **
119419515 TTGTGGAATTTGCTTGGCTGTCAATTGTTGTACTCCCTCGGCGTGGCTTCACGTAGG
259 TTGTGGAATTTGCTTGGCTCTCAATTGCAGTACTCCCTCGGCGTGGCTTCACGTAGG
*
119419572 TATTTTTTGGATCCTTGCTGCAAAA-CAACATGACC-AA-GTGAGTGTGTGTGTGTGTGT-TG-A
1 TATTTTTTGAATCCTTGCTG-AAAACCAACATGACCAAATGTGAGTGTGTGTGTGTGTGTGTGTA
* *
119419632 AACATGTTATAGTAATAGAGCTTGAACTTCCATAATCAAGTTGTTATGCATGGTGAAACACGAAT
65 AAAATG-T-TA-TAATAGAGCTTGAACTTCCATAATCAAGTTATTATGCATGGTGAAACACGAAT
* * *
119419697 CACCATATAGAATAAATGGGTTCACAATGGTGATATGATTCCTAGAACCAAACATGGCATGCAGT
127 CACCATATAGAATAAATGGATCCACAATGGTGATATGATTCCAAGAACCAAACATGGCATGCAGT
*
119419762 GCATAATAACCCTGGAGTTGACAATCAACAATGTAAAACATAAACCTGCCATGACGTTTAGACTC
192 GCATAATAACCCTGGAGTTGACAATCAACAATGTAAAACATAAACCTGCCATGACGTCTAGACTC
*
119419827 CTTTGTGGAATTTGCTTGGCTCTCACTTGCAGTACTCCCTCGGCGTGGCTTCACGTAGG
257 CTTTGTGGAATTTGCTTGGCTCTCAATTGCAGTACTCCCTCGGCGTGGCTTCACGTAGG
119419886 TAT
1 TAT
119419889 CTTTATCAAA
Statistics
Matches: 296, Mismatches: 17, Indels: 11
0.91 0.05 0.03
Matches are distributed among these distances:
311 6 0.02
312 1 0.00
313 2 0.01
314 234 0.79
315 19 0.06
316 2 0.01
317 28 0.09
318 4 0.01
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (315 bp):
TATTTTTTGAATCCTTGCTGAAAACCAACATGACCAAATGTGAGTGTGTGTGTGTGTGTGTGTAA
AAATGTTATAATAGAGCTTGAACTTCCATAATCAAGTTATTATGCATGGTGAAACACGAATCACC
ATATAGAATAAATGGATCCACAATGGTGATATGATTCCAAGAACCAAACATGGCATGCAGTGCAT
AATAACCCTGGAGTTGACAATCAACAATGTAAAACATAAACCTGCCATGACGTCTAGACTCCTTT
GTGGAATTTGCTTGGCTCTCAATTGCAGTACTCCCTCGGCGTGGCTTCACGTAGG
Found at i:119425035 original size:19 final size:20
Alignment explanation
Indices: 119424984--119425036 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 20
119424974 TTTATGCTTT
119424984 ATTATTTTTATTTAATAAAAA
1 ATTATTTTTATTT-ATAAAAA
*
119425005 ATATAATGTTTATTT-TAAAAA
1 AT-T-ATTTTTATTTATAAAAA
119425026 ATTATTTTTAT
1 ATTATTTTTAT
119425037 CATAATTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
19 7 0.25
20 1 0.04
21 10 0.36
22 1 0.04
23 9 0.32
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (20 bp):
ATTATTTTTATTTATAAAAA
Found at i:119425838 original size:21 final size:22
Alignment explanation
Indices: 119425814--119425857 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
119425804 TTATATTTTT
*
119425814 TAAAATATTTAAATA-TCAATA
1 TAAAATATTAAAATATTCAATA
119425835 TAAAATATTAAAATATTCAATA
1 TAAAATATTAAAATATTCAATA
119425857 T
1 T
119425858 TATTAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
TAAAATATTAAAATATTCAATA
Found at i:119428403 original size:28 final size:27
Alignment explanation
Indices: 119428333--119428390 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
119428323 GGAATAGATG
*
119428333 AAAGAGGGGGAGAGAATCAAAGTAGGA
1 AAAGAGAGGGAGAGAATCAAAGTAGGA
*
119428360 AAAGAGAGGGAGAGAATCAAAGTAGGG
1 AAAGAGAGGGAGAGAATCAAAGTAGGA
119428387 AAAG
1 AAAG
119428391 GGATGGTGGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.50, C:0.03, G:0.40, T:0.07
Consensus pattern (27 bp):
AAAGAGAGGGAGAGAATCAAAGTAGGA
Found at i:119428495 original size:29 final size:29
Alignment explanation
Indices: 119428463--119428520 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
119428453 CAGTCAAGTC
119428463 TATAACAAAAAATGATAAAACTGTTAACG
1 TATAACAAAAAATGATAAAACTGTTAACG
* *
119428492 TATAACAAAAAATGGTAAATCTGTTAACG
1 TATAACAAAAAATGATAAAACTGTTAACG
119428521 AAAAATAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.52, C:0.10, G:0.12, T:0.26
Consensus pattern (29 bp):
TATAACAAAAAATGATAAAACTGTTAACG
Found at i:119431849 original size:18 final size:19
Alignment explanation
Indices: 119431828--119431867 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
119431818 TTTAAAATCG
*
119431828 ATACAAGTTTAAATTT-AT
1 ATACAAATTTAAATTTAAT
*
119431846 ATACAAATTTTAATTTAAT
1 ATACAAATTTAAATTTAAT
119431865 ATA
1 ATA
119431868 TAATATTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 14 0.74
19 5 0.26
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (19 bp):
ATACAAATTTAAATTTAAT
Found at i:119431912 original size:23 final size:22
Alignment explanation
Indices: 119431886--119431941 Score: 57
Period size: 21 Copynumber: 2.6 Consensus size: 22
119431876 TAGATGCAAT
119431886 ATTATATTATTTATAAATAA-ACA
1 ATTATATTATTTATAAA-AATA-A
*
119431909 ATTAT-TT-TGTATAAAAATAA
1 ATTATATTATTTATAAAAATAA
119431929 ATTATA-TATTTAT
1 ATTATATTATTTAT
119431942 TTTTTAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
20 9 0.32
21 12 0.43
22 2 0.07
23 5 0.18
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
ATTATATTATTTATAAAAATAA
Found at i:119432043 original size:29 final size:29
Alignment explanation
Indices: 119432010--119432079 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 29
119432000 AATCAAATTT
*
119432010 TTATATATATAATTATAC-TAAATTAAAAG
1 TTATATATA-AATTACACATAAATTAAAAG
* *
119432039 TTATATATCAAATTACACATTATATTAAAAT
1 TTATATAT-AAATTACACA-TAAATTAAAAG
119432070 TTATATATAA
1 TTATATATAA
119432080 CTTTTTATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
29 15 0.43
30 3 0.09
31 17 0.49
ACGTcount: A:0.50, C:0.06, G:0.01, T:0.43
Consensus pattern (29 bp):
TTATATATAAATTACACATAAATTAAAAG
Found at i:119437769 original size:14 final size:14
Alignment explanation
Indices: 119437750--119437803 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 14
119437740 AGCTCAATGA
119437750 TTTAAATAAAAACT
1 TTTAAATAAAAACT
*
119437764 TTTAAATAATTAAATT
1 TTTAAATAA--AAACT
*
119437780 ATTTAAATGAAAACT
1 -TTTAAATAAAAACT
*
119437795 TTTGAATAA
1 TTTAAATAA
119437804 TTCAATGATT
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
14 16 0.50
15 4 0.12
16 4 0.12
17 8 0.25
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.41
Consensus pattern (14 bp):
TTTAAATAAAAACT
Found at i:119438059 original size:41 final size:41
Alignment explanation
Indices: 119437998--119438093 Score: 165
Period size: 41 Copynumber: 2.3 Consensus size: 41
119437988 TAATTCAAGC
* *
119437998 AAATAAAAAAAAAGGTAATTGCAAAAGAAAAAGATATAATA
1 AAATTAAAAATAAGGTAATTGCAAAAGAAAAAGATATAATA
*
119438039 AAATTAAAAATAAGGTAATTGCAAAAGAACAAGATATAATA
1 AAATTAAAAATAAGGTAATTGCAAAAGAAAAAGATATAATA
119438080 AAATTAAAAATAAG
1 AAATTAAAAATAAG
119438094 TAGAAATCTG
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.66, C:0.03, G:0.11, T:0.20
Consensus pattern (41 bp):
AAATTAAAAATAAGGTAATTGCAAAAGAAAAAGATATAATA
Found at i:119438272 original size:11 final size:12
Alignment explanation
Indices: 119438253--119438304 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
119438243 AATAAAATTG
119438253 AAATATTTATAT
1 AAATATTTATAT
119438265 AAAT-TTTATAT
1 AAATATTTATAT
* *
119438276 ATTATATTTATTT
1 A-AATATTTATAT
*
119438289 AAATATATATAAT
1 AAATATTTAT-AT
119438302 AAA
1 AAA
119438305 ATCAAAATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
11 8 0.25
12 13 0.41
13 11 0.34
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
AAATATTTATAT
Found at i:119443767 original size:3 final size:3
Alignment explanation
Indices: 119443754--119443787 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
119443744 CAGCAACAAT
*
119443754 TCA TGCA TCA TCA TCA TCA TCA TCA CCA TCA TCA
1 TCA T-CA TCA TCA TCA TCA TCA TCA TCA TCA TCA
119443788 AAACATGGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.32, C:0.35, G:0.03, T:0.29
Consensus pattern (3 bp):
TCA
Found at i:119449380 original size:60 final size:60
Alignment explanation
Indices: 119449307--119449424 Score: 139
Period size: 60 Copynumber: 2.0 Consensus size: 60
119449297 TAATTGTGTA
* * * * *
119449307 ATCATTCTATAACTTTTCATAGTTGGGTGACCAATAAAA-ATATTTACTAATAGTTGGGTG
1 ATCATTCTATAACTTATCATAATTGAGTGACCAA-AAAAGAAAGTTACTAATAGTTGGGTG
* * * *
119449367 ATCATTTTGTAACTTATCATAATTGATTGACGAAAAAAGAAAGTTACTAATAGTTGGG
1 ATCATTCTATAACTTATCATAATTGAGTGACCAAAAAAGAAAGTTACTAATAGTTGGG
119449425 ACTACTAGTG
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
59 4 0.08
60 44 0.92
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.36
Consensus pattern (60 bp):
ATCATTCTATAACTTATCATAATTGAGTGACCAAAAAAGAAAGTTACTAATAGTTGGGTG
Found at i:119450908 original size:24 final size:24
Alignment explanation
Indices: 119450881--119450932 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
119450871 TTAGTAAGTC
*
119450881 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
119450905 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
119450929 AAAT
1 AAAT
119450933 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:119452878 original size:24 final size:24
Alignment explanation
Indices: 119452851--119452902 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
119452841 TTAGTAAGTC
*
119452851 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
119452875 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
119452899 AAAT
1 AAAT
119452903 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:119463245 original size:21 final size:22
Alignment explanation
Indices: 119463207--119463247 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
119463197 TTTTATTCTA
119463207 TTTTTATTTTTAGAAATTTATT
1 TTTTTATTTTTAGAAATTTATT
*
119463229 TTTTTATTTTTTG-AATTTA
1 TTTTTATTTTTAGAAATTTA
119463248 ATAATATAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (22 bp):
TTTTTATTTTTAGAAATTTATT
Found at i:119469811 original size:20 final size:20
Alignment explanation
Indices: 119469777--119469839 Score: 65
Period size: 19 Copynumber: 3.1 Consensus size: 20
119469767 TAACATAAAC
*
119469777 ATATATATATATATATAATTT
1 ATATATTTAT-TATATAATTT
*
119469798 ATATTTTTATTATATAA-TT
1 ATATATTTATTATATAATTT
* * *
119469817 ACATATTTATTATTTTATTT
1 ATATATTTATTATATAATTT
119469837 ATA
1 ATA
119469840 CAATAAAAGA
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
19 15 0.44
20 11 0.32
21 8 0.24
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.59
Consensus pattern (20 bp):
ATATATTTATTATATAATTT
Found at i:119482296 original size:15 final size:14
Alignment explanation
Indices: 119482269--119482295 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
119482259 AAATATAGTA
119482269 AAATATTAAAAAAT
1 AAATATTAAAAAAT
119482283 AAATATTAAAAAA
1 AAATATTAAAAAA
119482296 AACACATACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AAATATTAAAAAAT
Found at i:119486041 original size:18 final size:19
Alignment explanation
Indices: 119485995--119486060 Score: 57
Period size: 18 Copynumber: 3.6 Consensus size: 19
119485985 TAAAATTAAT
* *
119485995 TTATTATTATTA-TCACTG
1 TTATTACTATTATTCATTG
* *
119486013 TTTTTATTATTATT-ATTG
1 TTATTACTATTATTCATTG
* *
119486031 TTATTGCTATT-TTCATTT
1 TTATTACTATTATTCATTG
119486049 TTATTACTATTA
1 TTATTACTATTA
119486061 ACATTAGTGT
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
17 2 0.05
18 35 0.92
19 1 0.03
ACGTcount: A:0.24, C:0.08, G:0.05, T:0.64
Consensus pattern (19 bp):
TTATTACTATTATTCATTG
Found at i:119486043 original size:27 final size:27
Alignment explanation
Indices: 119485995--119486060 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
119485985 TAAAATTAAT
* *
119485995 TTATTATTATTATCACTGTTTTTATTA
1 TTATTATTATTATCACTATTTTCATTA
* ** *
119486022 TTATTATTGTTATTGCTATTTTCATTT
1 TTATTATTATTATCACTATTTTCATTA
*
119486049 TTATTACTATTA
1 TTATTATTATTA
119486061 ACATTAGTGT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.24, C:0.08, G:0.05, T:0.64
Consensus pattern (27 bp):
TTATTATTATTATCACTATTTTCATTA
Found at i:119486213 original size:20 final size:20
Alignment explanation
Indices: 119486150--119486225 Score: 63
Period size: 20 Copynumber: 4.0 Consensus size: 20
119486140 ATTTAAGATA
119486150 GTATTATTACTATTACT-T-
1 GTATTATTACTATTACTATG
** * *
119486168 AAATTATTATTACTTATTAT-
1 GTATTATTACTA-TTACTATG
119486188 -TATTATTATCT-TTACTATG
1 GTATTATTA-CTATTACTATG
119486207 GTATTATTACTATTACTAT
1 GTATTATTACTATTACTAT
119486226 ATTCTCATCT
Statistics
Matches: 45, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
18 15 0.33
19 13 0.29
20 17 0.38
ACGTcount: A:0.32, C:0.09, G:0.04, T:0.55
Consensus pattern (20 bp):
GTATTATTACTATTACTATG
Found at i:119486292 original size:17 final size:17
Alignment explanation
Indices: 119486270--119486302 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
119486260 AAATTTTTAT
*
119486270 TTATCTATTTGTATTTC
1 TTATCTATTTATATTTC
119486287 TTATCTATTTATATTT
1 TTATCTATTTATATTT
119486303 TTTGTTGTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.09, G:0.03, T:0.67
Consensus pattern (17 bp):
TTATCTATTTATATTTC
Found at i:119486392 original size:3 final size:3
Alignment explanation
Indices: 119486360--119486510 Score: 71
Period size: 3 Copynumber: 51.3 Consensus size: 3
119486350 TACTAATATC
* * * * ** *
119486360 ATT ATT -TT ACT ATT GTT ATT TTT CTT ATT ATT ACC ATT ATT ATT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * *
119486407 ATT ACGT A-T ATT -TT ATT ATT ATT GTT -TT ATG GTT GTT ATT ATT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * *
119486450 ATT ATT ATT -TCCT ATT -TA ACT ATT ATT ACT ATT ATT ATT TTT ACT
1 ATT ATT ATT AT--T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
119486495 ATT ATA ATT ATT ATT A
1 ATT ATT ATT ATT ATT A
119486511 ACATTTTATT
Statistics
Matches: 108, Mismatches: 31, Indels: 18
0.69 0.20 0.11
Matches are distributed among these distances:
2 10 0.09
3 94 0.87
4 3 0.03
5 1 0.01
ACGTcount: A:0.28, C:0.07, G:0.04, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:119494142 original size:31 final size:31
Alignment explanation
Indices: 119494104--119494166 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
119494094 TAGTTATTTC
*
119494104 TAAAAATT-GAATAAAATCAAAATTTCATGTA
1 TAAAAATTCGAACAAAATC-AAATTTCATGTA
* *
119494135 TAAAAATTCGCACAAAATCAAATTTTATGTA
1 TAAAAATTCGAACAAAATCAAATTTCATGTA
119494166 T
1 T
119494167 GAGATTGTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 20 0.71
32 8 0.29
ACGTcount: A:0.51, C:0.10, G:0.06, T:0.33
Consensus pattern (31 bp):
TAAAAATTCGAACAAAATCAAATTTCATGTA
Found at i:119499573 original size:24 final size:21
Alignment explanation
Indices: 119499545--119499590 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 21
119499535 GATTCAGAAA
119499545 AATCATACAAAAGAATGAGAAATG
1 AATCAT-CAAAA-AATGA-AAATG
*
119499569 AATCATTAAAAAATGAAAATG
1 AATCATCAAAAAATGAAAATG
119499590 A
1 A
119499591 TAAAGAACCC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 6 0.29
22 5 0.24
23 4 0.19
24 6 0.29
ACGTcount: A:0.61, C:0.07, G:0.13, T:0.20
Consensus pattern (21 bp):
AATCATCAAAAAATGAAAATG
Found at i:119499744 original size:21 final size:21
Alignment explanation
Indices: 119499720--119499763 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
119499710 ACGACCTAAT
*
119499720 TAAATAGAAAGGATA-ATTAAA
1 TAAATA-AAAGGATACAATAAA
*
119499741 TAAATAAAATGATACAATAAA
1 TAAATAAAAGGATACAATAAA
119499762 TA
1 TA
119499764 CTAAAGATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.64, C:0.02, G:0.09, T:0.25
Consensus pattern (21 bp):
TAAATAAAAGGATACAATAAA
Found at i:119501297 original size:20 final size:19
Alignment explanation
Indices: 119501267--119501356 Score: 73
Period size: 20 Copynumber: 4.6 Consensus size: 19
119501257 GATGTTAGAA
119501267 TATTAATTCTATTATATATT
1 TATT-ATTCTATTATATATT
119501287 TATCTATTCTATTATATA--
1 TAT-TATTCTATTATATATT
*
119501305 TA-TATTCTAATATATATTAT
1 TATTATTCTATTATATA-T-T
119501325 TATTATT-T-TTATATTATT
1 TATTATTCTATTATA-TATT
119501343 TATCTATTTCTATT
1 TAT-TA-TTCTATT
119501357 TCATTTATTT
Statistics
Matches: 57, Mismatches: 2, Indels: 20
0.72 0.03 0.25
Matches are distributed among these distances:
16 13 0.23
18 6 0.11
19 7 0.12
20 23 0.40
21 6 0.11
22 2 0.04
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (19 bp):
TATTATTCTATTATATATT
Found at i:119501312 original size:16 final size:16
Alignment explanation
Indices: 119501272--119501325 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
119501262 TAGAATATTA
119501272 ATTCTATTATATATTTATCT
1 ATTCTATTATATA--TA--T
119501292 ATTCTATTATATATAT
1 ATTCTATTATATATAT
*
119501308 ATTCTAATATATAT-T
1 ATTCTATTATATATAT
119501323 ATT
1 ATT
119501326 ATTATTTTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
15 4 0.12
16 14 0.42
18 2 0.06
20 13 0.39
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.57
Consensus pattern (16 bp):
ATTCTATTATATATAT
Found at i:119518398 original size:20 final size:19
Alignment explanation
Indices: 119518353--119518409 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 19
119518343 TCAAATAAAT
*
119518353 TATAAAAATTATTTTTAAAAA
1 TATAAAAATTA--TTAAAAAA
119518374 T-TAAAAATTATTAAAAAA
1 TATAAAAATTATTAAAAAA
*
119518392 GTATAAAAACTA-TAAAAA
1 -TATAAAAATTATTAAAAA
119518410 TATTTTTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
18 7 0.22
19 7 0.22
20 17 0.53
21 1 0.03
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (19 bp):
TATAAAAATTATTAAAAAA
Found at i:119520357 original size:29 final size:28
Alignment explanation
Indices: 119520315--119520371 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 28
119520305 GCTAAATTGG
*
119520315 AATAGAATTAACATTTACGGTTTAGAAAA
1 AATAGAATTAACATTTACGATTTA-AAAA
*
119520344 AATAGAGTTAACATTTACGATTTAAAAA
1 AATAGAATTAACATTTACGATTTAAAAA
119520372 TGACATTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 4 0.15
29 22 0.85
ACGTcount: A:0.49, C:0.07, G:0.12, T:0.32
Consensus pattern (28 bp):
AATAGAATTAACATTTACGATTTAAAAA
Found at i:119526325 original size:3 final size:3
Alignment explanation
Indices: 119526302--119526342 Score: 55
Period size: 3 Copynumber: 13.0 Consensus size: 3
119526292 TAACAGAAAA
*
119526302 AAT AATT AAA AAT ATAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AA-T AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
119526343 CGGTTTGCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
3 28 0.82
4 6 0.18
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:119529576 original size:20 final size:20
Alignment explanation
Indices: 119529551--119529600 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
119529541 TGGCTTAAAA
119529551 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
119529571 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
119529588 GTGGTAGTGGATT
1 TTGGTAGTGGATT
119529601 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:119534205 original size:20 final size:20
Alignment explanation
Indices: 119534180--119534229 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
119534170 TGGCTTAAAA
119534180 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
119534200 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
119534217 GTGGTAGTGGATT
1 TTGGTAGTGGATT
119534230 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:119535556 original size:22 final size:23
Alignment explanation
Indices: 119535515--119535558 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
119535505 ATCTTCATAT
119535515 ATTTTTTGAAAGAAATTTCTACA
1 ATTTTTTGAAAGAAATTTCTACA
*
119535538 ATTTTTTGAAATAAA-TTCTAC
1 ATTTTTTGAAAGAAATTTCTAC
119535559 TTCAAATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.39, C:0.09, G:0.07, T:0.45
Consensus pattern (23 bp):
ATTTTTTGAAAGAAATTTCTACA
Found at i:119535841 original size:18 final size:18
Alignment explanation
Indices: 119535818--119535863 Score: 69
Period size: 17 Copynumber: 2.6 Consensus size: 18
119535808 GAGATAGAAT
119535818 ATTTTTATTTCTAAT-TTA
1 ATTTTTATTT-TAATGTTA
119535836 ATTTTTA-TTTAATGTTA
1 ATTTTTATTTTAATGTTA
119535853 ATTTTTATTTT
1 ATTTTTATTTT
119535864 TTTATTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
16 4 0.15
17 12 0.46
18 10 0.38
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (18 bp):
ATTTTTATTTTAATGTTA
Found at i:119538076 original size:31 final size:31
Alignment explanation
Indices: 119538041--119538102 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
119538031 GCCCGACGAG
119538041 TTAAATAAATTTTTTTGAATAATTTAATAAT
1 TTAAATAAATTTTTTTGAATAATTTAATAAT
119538072 TTAAATAAATTTTTTTGAATAATTTAATAAT
1 TTAAATAAATTTTTTTGAATAATTTAATAAT
119538103 CAATTTAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (31 bp):
TTAAATAAATTTTTTTGAATAATTTAATAAT
Found at i:119538109 original size:12 final size:12
Alignment explanation
Indices: 119538092--119538117 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
119538082 TTTTTTGAAT
119538092 AATTTAATAATC
1 AATTTAATAATC
119538104 AATTTAATAATC
1 AATTTAATAATC
119538116 AA
1 AA
119538118 AACAAACACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (12 bp):
AATTTAATAATC
Found at i:119541188 original size:17 final size:17
Alignment explanation
Indices: 119541166--119541204 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
119541156 AAAGGAAGAA
119541166 CAAAACAAGCCATGATC
1 CAAAACAAGCCATGATC
119541183 CAAAACAAGCCATGATC
1 CAAAACAAGCCATGATC
*
119541200 TAAAA
1 CAAAA
119541205 TGACGTCACC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.51, C:0.26, G:0.10, T:0.13
Consensus pattern (17 bp):
CAAAACAAGCCATGATC
Found at i:119546931 original size:73 final size:73
Alignment explanation
Indices: 119546853--119547038 Score: 363
Period size: 73 Copynumber: 2.5 Consensus size: 73
119546843 TATTATTATT
*
119546853 TGGATGTAATGATGTAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
119546918 ATTTTAAG
66 ATTTTAAG
119546926 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
119546991 ATTTTAAG
66 ATTTTAAG
119546999 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
119547039 GTAATGGCCC
Statistics
Matches: 112, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 112 1.00
ACGTcount: A:0.28, C:0.06, G:0.25, T:0.41
Consensus pattern (73 bp):
TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
ATTTTAAG
Found at i:119547673 original size:13 final size:13
Alignment explanation
Indices: 119547655--119547686 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
119547645 TTTCCAGCAA
119547655 TTATGAATTTATT
1 TTATGAATTTATT
119547668 TTATGAATTTATT
1 TTATGAATTTATT
*
119547681 TGATGA
1 TTATGA
119547687 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:119547894 original size:50 final size:50
Alignment explanation
Indices: 119547781--119548022 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
119547771 ATTTGGGTAA
* * *
119547781 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
119547837 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
119547887 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
119547937 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
119547987 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
119548023 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:119547970 original size:100 final size:103
Alignment explanation
Indices: 119547781--119548030 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
119547771 ATTTGGGTAA
119547781 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
119547846 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
119547887 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
119547949 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
119547987 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
119548031 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:119554798 original size:13 final size:13
Alignment explanation
Indices: 119554780--119554811 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
119554770 TTTCCAGCAA
119554780 TTATGAATTTATT
1 TTATGAATTTATT
119554793 TTATGAATTTATT
1 TTATGAATTTATT
*
119554806 TGATGA
1 TTATGA
119554812 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:119555019 original size:50 final size:50
Alignment explanation
Indices: 119554906--119555147 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
119554896 ATTTGGGTAA
* * *
119554906 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
119554962 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
119555012 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
119555062 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
119555112 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
119555148 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:119555095 original size:100 final size:103
Alignment explanation
Indices: 119554906--119555155 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
119554896 ATTTGGGTAA
119554906 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
119554971 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
119555012 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
119555074 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
119555112 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
119555156 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:119560768 original size:23 final size:23
Alignment explanation
Indices: 119560742--119560839 Score: 153
Period size: 23 Copynumber: 4.3 Consensus size: 23
119560732 ATAAGTGCCA
119560742 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
119560765 CACTGATATGTAGCCGAAGCTAT
1 CACTGATATGTAGCCGAAGCTAC
* *
119560788 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
119560810 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
119560833 CACTGAT
1 CACTGAT
119560840 CAATAACACT
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
22 19 0.28
23 48 0.72
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:119560807 original size:45 final size:45
Alignment explanation
Indices: 119560749--119560837 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
119560739 CCACACTGAT
* * *
119560749 ATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTATCACTGG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
119560794 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
119560838 ATCAATAACA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.20
Consensus pattern (45 bp):
ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
Found at i:119563287 original size:3 final size:3
Alignment explanation
Indices: 119563279--119563313 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
119563269 ATCACATGTT
119563279 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
119563314 TGGATGTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:119574664 original size:42 final size:42
Alignment explanation
Indices: 119574617--119574700 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
119574607 TTTGTGATCC
119574617 GCTTGTGTTATAACAATTTAACACTTGTGGTTACTTGAACAT
1 GCTTGTGTTATAACAATTTAACACTTGTGGTTACTTGAACAT
119574659 GCTTGTGTTATAACAATTTAACACTTGTGGTTACTTGAACAT
1 GCTTGTGTTATAACAATTTAACACTTGTGGTTACTTGAACAT
119574701 ATATCTGCAC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (42 bp):
GCTTGTGTTATAACAATTTAACACTTGTGGTTACTTGAACAT
Found at i:119574685 original size:22 final size:22
Alignment explanation
Indices: 119574618--119574687 Score: 76
Period size: 22 Copynumber: 3.3 Consensus size: 22
119574608 TTGTGATCCG
119574618 CTTGTGTTATAACAATTTAACA
1 CTTGTGTTATAACAATTTAACA
* *
119574640 CTTGTGGT-T-AC--TTGAACA
1 CTTGTGTTATAACAATTTAACA
119574658 TGCTTGTGTTATAACAATTTAACA
1 --CTTGTGTTATAACAATTTAACA
119574682 CTTGTG
1 CTTGTG
119574688 GTTACTTGAA
Statistics
Matches: 38, Mismatches: 4, Indels: 12
0.70 0.07 0.22
Matches are distributed among these distances:
18 6 0.16
20 9 0.24
21 2 0.05
22 15 0.39
24 6 0.16
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (22 bp):
CTTGTGTTATAACAATTTAACA
Found at i:119581190 original size:16 final size:14
Alignment explanation
Indices: 119581152--119581196 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
119581142 TTCATGACAC
*
119581152 TATTAAATTTATTT
1 TATTAAATTCATTT
119581166 TATTAAATTCATATT
1 TATTAAATTCAT-TT
119581181 TATTATAATTC-TTT
1 TATTA-AATTCATTT
119581195 TA
1 TA
119581197 ATTACATACC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
14 15 0.54
15 8 0.29
16 5 0.18
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (14 bp):
TATTAAATTCATTT
Found at i:119582185 original size:2 final size:2
Alignment explanation
Indices: 119582178--119582202 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
119582168 ACAAGCCATA
119582178 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
119582203 AAACACTCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:119593927 original size:14 final size:13
Alignment explanation
Indices: 119593908--119593937 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
119593898 ATGGTTATTC
119593908 ATTTTATTTATTTT
1 ATTTTATTT-TTTT
119593922 ATTTTATTTTTTT
1 ATTTTATTTTTTT
119593935 ATT
1 ATT
119593938 ATAATTATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
ATTTTATTTTTTT
Found at i:119595045 original size:15 final size:16
Alignment explanation
Indices: 119595025--119595057 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
119595015 GATCTTTTTT
119595025 ATATTTTGAATTA-AA
1 ATATTTTGAATTATAA
*
119595040 ATATTTTGCATTATAA
1 ATATTTTGAATTATAA
119595056 AT
1 AT
119595058 CAATTTCTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.48
Consensus pattern (16 bp):
ATATTTTGAATTATAA
Found at i:119596290 original size:19 final size:19
Alignment explanation
Indices: 119596258--119596299 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
119596248 AAACCTAAGC
119596258 ATTATTATTATTTGAATCGA
1 ATTATTATTATTTG-ATCGA
* *
119596278 ATTA-TATTGTTTGGTCGA
1 ATTATTATTATTTGATCGA
119596296 ATTA
1 ATTA
119596300 ATTAAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 8 0.40
19 8 0.40
20 4 0.20
ACGTcount: A:0.31, C:0.05, G:0.14, T:0.50
Consensus pattern (19 bp):
ATTATTATTATTTGATCGA
Found at i:119598538 original size:18 final size:19
Alignment explanation
Indices: 119598517--119598580 Score: 69
Period size: 18 Copynumber: 3.4 Consensus size: 19
119598507 AAATTAGAAT
119598517 AAAATATA-AAAAATGTAA
1 AAAATATATAAAAATGTAA
*
119598535 AAAATATATAAAAAAGT-A
1 AAAATATATAAAAATGTAA
* * *
119598553 AAATTTTATAAAAGTCGTAA
1 AAAATATATAAAAAT-GTAA
119598573 AAAATATA
1 AAAATATA
119598581 AAATATAAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
18 20 0.56
19 9 0.25
20 7 0.19
ACGTcount: A:0.66, C:0.02, G:0.06, T:0.27
Consensus pattern (19 bp):
AAAATATATAAAAATGTAA
Found at i:119598708 original size:8 final size:9
Alignment explanation
Indices: 119598666--119598720 Score: 51
Period size: 10 Copynumber: 6.0 Consensus size: 9
119598656 AAAAGAACCA
119598666 TTTTATTATT
1 TTTTATTA-T
* *
119598676 TTTCTATAAA
1 TTT-TATTAT
119598686 TTTTATTGAT
1 TTTTATT-AT
119598696 TTTTATT-T
1 TTTTATTAT
119598704 TTTTATTAT
1 TTTTATTAT
119598713 TTTT-TTAT
1 TTTTATTAT
119598721 CACATATCAC
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 12 0.32
9 8 0.21
10 14 0.37
11 4 0.11
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.75
Consensus pattern (9 bp):
TTTTATTAT
Found at i:119598851 original size:35 final size:36
Alignment explanation
Indices: 119598781--119598852 Score: 85
Period size: 35 Copynumber: 2.0 Consensus size: 36
119598771 GGGATCATTA
* * *
119598781 ATTTTGTATGATTTTTATAAAATTTTATAGTTTTTT
1 ATTTTGTACGATTTTTATAAAAATTTATAGATTTTT
*
119598817 ATTTT-TACGATTTTTATAAAAAATTTCTA-ATTTTT
1 ATTTTGTACGATTTTTAT-AAAAATTTATAGATTTTT
119598852 A
1 A
119598853 ATAATTTTAG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
35 17 0.55
36 14 0.45
ACGTcount: A:0.32, C:0.03, G:0.06, T:0.60
Consensus pattern (36 bp):
ATTTTGTACGATTTTTATAAAAATTTATAGATTTTT
Found at i:119598851 original size:36 final size:36
Alignment explanation
Indices: 119598781--119598851 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
119598771 GGGATCATTA
* * *
119598781 ATTTTGTATGATTTTTATAAAATTTTATAGTTTTTT
1 ATTTTGTACGATTTTTATAAAAATTTATAATTTTTT
*
119598817 ATTTT-TACGATTTTTATAAAAAATTTCTAATTTTT
1 ATTTTGTACGATTTTTAT-AAAAATTTATAATTTTT
119598852 AATAATTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 11 0.37
36 19 0.63
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.61
Consensus pattern (36 bp):
ATTTTGTACGATTTTTATAAAAATTTATAATTTTTT
Found at i:119599077 original size:87 final size:86
Alignment explanation
Indices: 119598966--119599146 Score: 222
Period size: 88 Copynumber: 2.1 Consensus size: 86
119598956 TTTGAGGGTC
* * * * * *
119598966 TTTTTGATGTATTTTGAAAGTTCAAGT-ATCAATTGAGTGAAAAAAACAGAG-GCTTAATTGTCT
1 TTTTTTATGCATTTTGAAAGTTCAAATGATCAATTAAGTGAAAAAAACAGAGAACTTAATTAT-T
* *
119599029 TTTTTTTTTTTAAAGTTTGAGAA
65 ATTATTTTTTTAAA-TTTGAGAA
* *
119599052 TATTTTTATGCATTTTGAAAGTTCAAATGCTCAATTAAGTGAAAAAAATAGAGAAACTTAATTAT
1 T-TTTTTATGCATTTTGAAAGTTCAAATGATCAATTAAGTGAAAAAAACAGAG-AACTTAATTAT
119599117 TATTATTTTTTTAAATTTGAGAA
64 TATTATTTTTTTAAATTTGAGAA
119599140 TTTTTTA
1 TTTTTTA
119599147 GACCTAAAAC
Statistics
Matches: 81, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
86 1 0.01
87 29 0.36
88 30 0.37
89 13 0.16
90 8 0.10
ACGTcount: A:0.36, C:0.06, G:0.14, T:0.45
Consensus pattern (86 bp):
TTTTTTATGCATTTTGAAAGTTCAAATGATCAATTAAGTGAAAAAAACAGAGAACTTAATTATTA
TTATTTTTTTAAATTTGAGAA
Found at i:119599533 original size:6 final size:6
Alignment explanation
Indices: 119599522--119599551 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
119599512 AGTTTGGGGG
119599522 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
119599552 TTATTATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:119606981 original size:36 final size:36
Alignment explanation
Indices: 119606934--119607042 Score: 200
Period size: 36 Copynumber: 3.0 Consensus size: 36
119606924 TCTAAGTAAG
119606934 GAAAAAAGAAAGATAAAAAAGCACCCATCAAGCTGA
1 GAAAAAAGAAAGATAAAAAAGCACCCATCAAGCTGA
119606970 GAAAAAAGAAAGATAAAAAAGCACCCATCAAGCTGA
1 GAAAAAAGAAAGATAAAAAAGCACCCATCAAGCTGA
* *
119607006 GAAAAAGGAAAAATAAAAAAGCACCCATCAAGCTGA
1 GAAAAAAGAAAGATAAAAAAGCACCCATCAAGCTGA
119607042 G
1 G
119607043 CAAAGTAAGT
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 71 1.00
ACGTcount: A:0.58, C:0.17, G:0.17, T:0.08
Consensus pattern (36 bp):
GAAAAAAGAAAGATAAAAAAGCACCCATCAAGCTGA
Found at i:119613437 original size:27 final size:27
Alignment explanation
Indices: 119613399--119613453 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
119613389 ATTGTTCATG
119613399 TGCCAAAAATATGAAACTATAAAACAA
1 TGCCAAAAATATGAAACTATAAAACAA
119613426 TGCCAAAAATATGAAACTATAAAACAA
1 TGCCAAAAATATGAAACTATAAAACAA
119613453 T
1 T
119613454 CTGCTGAAGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.58, C:0.15, G:0.07, T:0.20
Consensus pattern (27 bp):
TGCCAAAAATATGAAACTATAAAACAA
Found at i:119613891 original size:182 final size:182
Alignment explanation
Indices: 119613578--119613933 Score: 633
Period size: 182 Copynumber: 2.0 Consensus size: 182
119613568 CTTCCCCCCA
* * *
119613578 GATGCTATATGCTATAACATCAACAAAACCAGTTATGGTTTTCCTGATAACAGAGTAAGAATTAA
1 GATGCAATATGCTATAACATAAACAAAACCAGTTATGGTTTTCCTGATAACAGAGTAAGAATCAA
*
119613643 AGAAACAGATAAAATTGCAAATTATACTCCGATTCATGCAACCCAAAAAGCACAAAACCAGTTCC
66 AGAAACAGACAAAATTGCAAATTATACTCCGATTCATGCAACCCAAAAAGCACAAAACCAGTTCC
119613708 CTCAACAACACTCCTAGTTATACAACATCCATGATGATACTAACCAATGGGC
131 CTCAACAACACTCCTAGTTATACAACATCCATGATGATACTAACCAATGGGC
*
119613760 GATGCAATATGCTATAACATAAACAAACCCAGTT-TCGGTTTTCCTGATAACAGAGTAAGAATCA
1 GATGCAATATGCTATAACATAAACAAAACCAGTTAT-GGTTTTCCTGATAACAGAGTAAGAATCA
* *
119613824 AAGAAACAGACAAAATTGCAAATTATACTCCTATTCATGCAACCCAAAAAGCACAAATCCAGTTC
65 AAGAAACAGACAAAATTGCAAATTATACTCCGATTCATGCAACCCAAAAAGCACAAAACCAGTTC
119613889 CCTCAACAACACTCCTAGTTATACAACATCCATGATGATACTAAC
130 CCTCAACAACACTCCTAGTTATACAACATCCATGATGATACTAAC
119613934 AGGTTTGCTG
Statistics
Matches: 166, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
181 1 0.01
182 165 0.99
ACGTcount: A:0.41, C:0.23, G:0.12, T:0.24
Consensus pattern (182 bp):
GATGCAATATGCTATAACATAAACAAAACCAGTTATGGTTTTCCTGATAACAGAGTAAGAATCAA
AGAAACAGACAAAATTGCAAATTATACTCCGATTCATGCAACCCAAAAAGCACAAAACCAGTTCC
CTCAACAACACTCCTAGTTATACAACATCCATGATGATACTAACCAATGGGC
Found at i:119617063 original size:15 final size:15
Alignment explanation
Indices: 119617043--119617072 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
119617033 CATTTTATTT
*
119617043 ATATTAGGATAATTA
1 ATATTAAGATAATTA
119617058 ATATTAAGATAATTA
1 ATATTAAGATAATTA
119617073 TTAGAATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:119617124 original size:20 final size:20
Alignment explanation
Indices: 119617096--119617143 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
119617086 AATTTAGGAT
*
119617096 TTTAT-TTTAATT-ATCTTTA
1 TTTATCTTTAATTAAT-TGTA
119617115 TTTATCTTTAATTAATTGTA
1 TTTATCTTTAATTAATTGTA
119617135 TTTATCTTT
1 TTTATCTTT
119617144 TTAGAATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 5 0.19
20 19 0.73
21 2 0.08
ACGTcount: A:0.25, C:0.06, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTATCTTTAATTAATTGTA
Found at i:119617665 original size:18 final size:18
Alignment explanation
Indices: 119617642--119617683 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
119617632 TCTCCATCTC
*
119617642 AATTTCCGTCATTT-ATTT
1 AATTT-CGTAATTTAATTT
119617660 AATTTCGTAATTTCAATTT
1 AATTTCGTAATTT-AATTT
119617679 AATTT
1 AATTT
119617684 AAATACTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 7 0.33
18 5 0.24
19 9 0.43
ACGTcount: A:0.29, C:0.12, G:0.05, T:0.55
Consensus pattern (18 bp):
AATTTCGTAATTTAATTT
Found at i:119634808 original size:22 final size:21
Alignment explanation
Indices: 119634772--119634812 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
119634762 GTGGTTTGTG
119634772 AAAATTGAATCAAATGAAAAAT
1 AAAATTGAATCAAAT-AAAAAT
119634794 AAAATT-AATCAAAATAAAA
1 AAAATTGAATC-AAATAAAA
119634813 TTTGATGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.22
Consensus pattern (21 bp):
AAAATTGAATCAAATAAAAAT
Found at i:119636587 original size:18 final size:18
Alignment explanation
Indices: 119636560--119636652 Score: 132
Period size: 18 Copynumber: 5.2 Consensus size: 18
119636550 TACGACCGTT
119636560 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
119636578 TACGGCACTATTCACATA
1 TACGGTACTATTCACGTA
* *
119636596 TACAGTACTATTTACGTA
1 TACGGTACTATTCACGTA
*
119636614 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
119636632 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
119636650 TAC
1 TAC
119636653 AGTAGTTGGG
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 64 1.00
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:119646663 original size:108 final size:109
Alignment explanation
Indices: 119646526--119646742 Score: 395
Period size: 111 Copynumber: 2.0 Consensus size: 109
119646516 CCAATTAAAA
119646526 ACATGTTTACCAAAAACCCTTCTGCAACCCCCCCC-AAAAGTCATC-TCATCACTGTCTCTACTC
1 ACATGTTTACCAAAAACCCTTCTGCAACCCCCCCCAAAAAGTCATCTTCATCACTGTCTCTACTC
119646589 TCTAAAGAT-CCATTTTTTTTTCACCCAGTTATGTGGGCTTCTT
66 TCTAAAGATCCCATTTTTTTTTCACCCAGTTATGTGGGCTTCTT
119646632 ACATGTTTACCACAAATACCCTTCTGCAACCCCCCCCAAAAAGTCATCTTCATCACTGTCTCTAC
1 ACATGTTTACCA-AAA-ACCCTTCTGCAACCCCCCCCAAAAAGTCATCTTCATCACTGTCTCTAC
119646697 TCTCTAAAGATCCCATTTTTTTTTCACCCAGTTATGTGGGCTTCTT
64 TCTCTAAAGATCCCATTTTTTTTTCACCCAGTTATGTGGGCTTCTT
119646743 TGTCTTGGTC
Statistics
Matches: 106, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
106 12 0.11
107 3 0.03
108 20 0.19
109 10 0.09
110 27 0.25
111 34 0.32
ACGTcount: A:0.24, C:0.32, G:0.09, T:0.34
Consensus pattern (109 bp):
ACATGTTTACCAAAAACCCTTCTGCAACCCCCCCCAAAAAGTCATCTTCATCACTGTCTCTACTC
TCTAAAGATCCCATTTTTTTTTCACCCAGTTATGTGGGCTTCTT
Found at i:119653313 original size:75 final size:76
Alignment explanation
Indices: 119653174--119653313 Score: 183
Period size: 75 Copynumber: 1.9 Consensus size: 76
119653164 TAAACTATTC
* * * *
119653174 AACAAACAACTTTCCACAAGAGAGCTAAAACATGCTGGTAATCAAGCTTTCTAAAAGCGCCTTGA
1 AACAAACAACTTTCCACAAGAAAGCTAAAACATGCGGGTAATCAAGCATTCTAAAAGCACCTTGA
119653239 TAGTAGAGCAG
66 TAGTAGAGCAG
* * * * * *
119653250 AACAAAC-GCTTTCCACAAGAAAGTTGAACCATGCGGGTAATCAAGCATTCTAATAGCATCTTGA
1 AACAAACAACTTTCCACAAGAAAGCTAAAACATGCGGGTAATCAAGCATTCTAAAAGCACCTTGA
119653314 AATCTTTAAA
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
75 47 0.87
76 7 0.13
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.22
Consensus pattern (76 bp):
AACAAACAACTTTCCACAAGAAAGCTAAAACATGCGGGTAATCAAGCATTCTAAAAGCACCTTGA
TAGTAGAGCAG
Found at i:119659048 original size:21 final size:21
Alignment explanation
Indices: 119659019--119659060 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
119659009 AGCTATTTAG
*
119659019 TATATAAAAATATTAATTAAT
1 TATAAAAAAATATTAATTAAT
*
119659040 TATAAAAAAATATTTATTAAT
1 TATAAAAAAATATTAATTAAT
119659061 AAAATTCACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (21 bp):
TATAAAAAAATATTAATTAAT
Found at i:119659349 original size:23 final size:23
Alignment explanation
Indices: 119659323--119659373 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 23
119659313 AAGTTTAAAG
119659323 TTTAAA-TTTGGTTAATAAAAA-AT
1 TTTAAAGTTTGG-TAA-AAAAATAT
119659346 TTTAAAGTTTGGTAAAAAAATAT
1 TTTAAAGTTTGGTAAAAAAATAT
119659369 TTTAA
1 TTTAA
119659374 CATTATTCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
22 5 0.19
23 16 0.62
24 5 0.19
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.43
Consensus pattern (23 bp):
TTTAAAGTTTGGTAAAAAAATAT
Found at i:119664315 original size:18 final size:20
Alignment explanation
Indices: 119664292--119664330 Score: 64
Period size: 18 Copynumber: 2.0 Consensus size: 20
119664282 AATTTTAAAA
119664292 TCATATA-TAAATG-TAATT
1 TCATATATTAAATGATAATT
119664310 TCATATATTAAATGATAATT
1 TCATATATTAAATGATAATT
119664330 T
1 T
119664331 AAAAGTGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.37
19 6 0.32
20 6 0.32
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (20 bp):
TCATATATTAAATGATAATT
Found at i:119664390 original size:27 final size:27
Alignment explanation
Indices: 119664359--119664411 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
119664349 TTAATTTTAA
*
119664359 ATTAATTTTTTGTAT-TTAAATAAATAC
1 ATTAATTTTTT-TATACTAAATAAATAC
119664386 ATTAATTTTTTTATACTAAATAAATA
1 ATTAATTTTTTTATACTAAATAAATA
119664412 TATTTTAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 3 0.12
27 21 0.88
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (27 bp):
ATTAATTTTTTTATACTAAATAAATAC
Found at i:119665809 original size:26 final size:26
Alignment explanation
Indices: 119665780--119665860 Score: 83
Period size: 26 Copynumber: 3.1 Consensus size: 26
119665770 GAAGTAACTA
*
119665780 GTATAAAATAAATTAGAATGAATAAT
1 GTATAAAACAAATTAGAATGAATAAT
* * * *
119665806 GTATGAAACAATTTAAAACGAATAAT
1 GTATAAAACAAATTAGAATGAATAAT
* *
119665832 GTACAAAACAAATT-GAAATAAATAAT
1 GTATAAAACAAATTAG-AATGAATAAT
119665858 GTA
1 GTA
119665861 AGATAGTTTA
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.57, C:0.05, G:0.11, T:0.27
Consensus pattern (26 bp):
GTATAAAACAAATTAGAATGAATAAT
Found at i:119666932 original size:74 final size:72
Alignment explanation
Indices: 119666777--119667322 Score: 509
Period size: 73 Copynumber: 7.5 Consensus size: 72
119666767 AGAAACCTTG
* * ** * **
119666777 CTAAGGCAACATTAAAAAGGTTGCTATAGTTCTTGTCTAAGGCACCTTTTAAAAACTGTTGGGAT
1 CTAAGGCAACCTTAAAAAGGTTGGTATAGACCTTGTCTAAGGCAACTTTTAAAAAAGGTTGGGAT
*
119666842 AGATCCGT
66 AGA-CCAT
* * *
119666850 CTAAGGCAACCTTAAAAAGTTTGGTATAGACCTTGTCTAAGACAACTTATAAAAAAAGGTTGGGA
1 CTAAGGCAACCTTAAAAAGGTTGGTATAGACCTTGTCTAAGGCAACTT-TTAAAAAAGGTTGGGA
*
119666915 TAGAGCCGT
65 TAGA-CCAT
* * *
119666924 CTAAGGCAACCTTAAAAAGGTTGGTATAGACCTTGTCTAAGACAACTTATAAAAAAAGGTTAGGA
1 CTAAGGCAACCTTAAAAAGGTTGGTATAGACCTTGTCTAAGGCAACTT-TTAAAAAAGGTTGGGA
119666989 TAGACCTAT
65 TAGACC-AT
* * * * *
119666998 CTAAGGCAACCTTAAATAGGTTGGGATAGACCATATCTAAGGCAACTTTTAAAAAATGTTGGGAT
1 CTAAGGCAACCTTAAAAAGGTTGGTATAGACCTTGTCTAAGGCAACTTTTAAAAAAGGTTGGGAT
119667063 AGACCCAT
66 AGA-CCAT
* * * * *
119667071 CTAAGGCAACATTAAAATGGTTGGGATGGACCTTGTCTAAGGCAACTTTTAAAAAAGGTTGGCAT
1 CTAAGGCAACCTTAAAAAGGTTGGTATAGACCTTGTCTAAGGCAACTTTTAAAAAAGGTTGGGAT
*
119667136 AGGTCCAT
66 A-GACCAT
* * ** * * ** * * * * *
119667144 TTAAAGCAACCTTGGAAAGGTTGGGATAAATATTATCTAATGAAACCTTTAAAAAAGGTTGTGAT
1 CTAAGGCAACCTTAAAAAGGTTGGTATAGACCTTGTCTAAGGCAACTTTTAAAAAAGGTTGGGAT
*
119667209 AAACCCAT
66 AGA-CCAT
* * * * * * *
119667217 CTAAGGTAACCTTAAAAAGGTTGAG-ATAAATCTCGTCTAAGGTAACTTTTAGAAAAGGTTGGCA
1 CTAAGGCAACCTTAAAAAGGTTG-GTATAGACCTTGTCTAAGGCAACTTTTAAAAAAGGTTGGGA
* *
119667281 TTGACTTAT
65 TAGAC-CAT
* * * * *
119667290 CTAAGACAACGTTAACAATGTTGGGATAGACCT
1 CTAAGGCAACCTTAAAAAGGTTGGTATAGACCT
119667323 ATTTACAGCA
Statistics
Matches: 392, Mismatches: 73, Indels: 16
0.81 0.15 0.03
Matches are distributed among these distances:
72 2 0.01
73 254 0.65
74 136 0.35
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.28
Consensus pattern (72 bp):
CTAAGGCAACCTTAAAAAGGTTGGTATAGACCTTGTCTAAGGCAACTTTTAAAAAAGGTTGGGAT
AGACCAT
Done.