Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 362 of 362
Found at i:119667228 original size:37 final size:38
Alignment explanation
Indices: 119667159--119667277 Score: 118
Period size: 38 Copynumber: 3.2 Consensus size: 38
119667149 GCAACCTTGG
* *** * *
119667159 AAAGGTTGGGATAAATATTATCTAATGAAACCTTTAAA
1 AAAGGTTGAGATAAATCCCATCTAAGGTAACCTTTAAA
*
119667197 AAAGGTTGTGATAAA-CCCATCTAAGGTAACC-TT-AA
1 AAAGGTTGAGATAAATCCCATCTAAGGTAACCTTTAAA
* * * *
119667232 AAAGGTTGAGATAAATCTCGTCTAAGGTAACTTTTAGA
1 AAAGGTTGAGATAAATCCCATCTAAGGTAACCTTTAAA
119667270 AAAGGTTG
1 AAAGGTTG
119667278 GCATTGACTT
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
35 16 0.24
36 15 0.22
37 13 0.19
38 23 0.34
ACGTcount: A:0.40, C:0.11, G:0.19, T:0.29
Consensus pattern (38 bp):
AAAGGTTGAGATAAATCCCATCTAAGGTAACCTTTAAA
Found at i:119667400 original size:35 final size:36
Alignment explanation
Indices: 119667337--119667408 Score: 101
Period size: 35 Copynumber: 2.0 Consensus size: 36
119667327 ACAGCAACGC
* * * *
119667337 TAAAAAAGGTTAGGATAGACCTTTTCTAATGTAACT
1 TAAAAAAAGTTAGGATAGACCCTGTCTAAAGTAACT
119667373 TAAAAAAAGTTAGGATA-ACCCTGTCTAAAGTAACT
1 TAAAAAAAGTTAGGATAGACCCTGTCTAAAGTAACT
119667408 T
1 T
119667409 TTTTTTACAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
35 16 0.50
36 16 0.50
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.31
Consensus pattern (36 bp):
TAAAAAAAGTTAGGATAGACCCTGTCTAAAGTAACT
Found at i:119667740 original size:45 final size:45
Alignment explanation
Indices: 119667676--119667762 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
119667666 AACACGTTGC
* *
119667676 AAACATTTTGTCAACTTGATTCCCATGATATCAAAAAATTATACA
1 AAACATTTTGTCAACTTGATTCCCATGACACCAAAAAATTATACA
*
119667721 AAACATTTTGTCGACTTGATTCCCATGACACCAAAAAATTAT
1 AAACATTTTGTCAACTTGATTCCCATGACACCAAAAAATTAT
119667763 GAGACAACTG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (45 bp):
AAACATTTTGTCAACTTGATTCCCATGACACCAAAAAATTATACA
Found at i:119670213 original size:18 final size:18
Alignment explanation
Indices: 119670190--119670253 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
119670180 ACATCGTGAT
119670190 CTGAAGCCCGAAGTCTAA
1 CTGAAGCCCGAAGTCTAA
**
119670208 CTGAAGCACATAAGTGCTAAA
1 CTGAAGC-CCGAAGT-CT-AA
* * *
119670229 CGGATGCCCGAAGGCTAA
1 CTGAAGCCCGAAGTCTAA
119670247 CTGAAGC
1 CTGAAGC
119670254 TCACCAGAGC
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
18 14 0.41
19 7 0.21
20 6 0.18
21 7 0.21
ACGTcount: A:0.34, C:0.25, G:0.25, T:0.16
Consensus pattern (18 bp):
CTGAAGCCCGAAGTCTAA
Found at i:119670695 original size:21 final size:22
Alignment explanation
Indices: 119670655--119670695 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
119670645 TTCCAAATAA
* *
119670655 AACATTATATCGTTTCTAATTC
1 AACATTATATCGATTATAATTC
119670677 AACATT-TATCGATTATAAT
1 AACATTATATCGATTATAAT
119670696 CGGGCATGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.37, C:0.15, G:0.05, T:0.44
Consensus pattern (22 bp):
AACATTATATCGATTATAATTC
Found at i:119682461 original size:46 final size:44
Alignment explanation
Indices: 119682357--119682464 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
119682347 TGTCTTTGAC
** * * *
119682357 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
119682401 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
119682447 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
119682465 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:119689867 original size:46 final size:44
Alignment explanation
Indices: 119689763--119689870 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
119689753 TATCTTTGGC
** * * *
119689763 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
119689807 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
119689853 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
119689871 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:119701066 original size:29 final size:29
Alignment explanation
Indices: 119701031--119701092 Score: 115
Period size: 29 Copynumber: 2.1 Consensus size: 29
119701021 AATGAAAACA
119701031 GCCAAGTATTCAAGTAATTGAAAACTATT
1 GCCAAGTATTCAAGTAATTGAAAACTATT
*
119701060 GCCAAGTGTTCAAGTAATTGAAAACTATT
1 GCCAAGTATTCAAGTAATTGAAAACTATT
119701089 GCCA
1 GCCA
119701093 GACCCTAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (29 bp):
GCCAAGTATTCAAGTAATTGAAAACTATT
Found at i:119702975 original size:141 final size:141
Alignment explanation
Indices: 119702692--119703544 Score: 1094
Period size: 141 Copynumber: 6.1 Consensus size: 141
119702682 AATATATATA
** * * * * * *
119702692 TCGTCTTAGGACTGGAC-AAATCCAAATATTATTTAAGCGTTGACTTAGGCATACATATACCAAC
1 TCGTCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATTCCAAC
* * *
119702756 CCTTATACAAAGAGTTGGCC-AAAACATA-AGTTGGCAAGTCTATCCCAACACTTAAGAAAGTGT
66 CCTTATACAAAGAGTT-GCCTAAAGCGTATA-TTGGCATGTCTATCCCAACACTTAAGAAAGTGT
119702819 CGCCACAATAGTG
129 CGCCACAATAGTG
* *
119702832 TCGTCTTAAGACTACACAAAAGCCAACTCTTATTCAAGCATTGCCTTAGGCATACATATTCCAAC
1 TCGTCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATTCCAAC
*
119702897 CCTTATACAAAGAGTTGCCTAAAGCGTATATTGGCATGTATATCCCAACACTTAAGAAAGTGTCG
66 CCTTATACAAAGAGTTGCCTAAAGCGTATATTGGCATGTCTATCCCAACACTTAAGAAAGTGTCG
*
119702962 CCACAATAATG
131 CCACAATAGTG
* *
119702973 TCGTCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATCTCCCAAC
1 TCGTCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATTCCAAC
* * * * *
119703038 CCTTATACAAAGAGTTGCTTAAAGCATATATTGGCATGTCTATCCCAAAACATAAGAAAGTGTTG
66 CCTTATACAAAGAGTTGCCTAAAGCGTATATTGGCATGTCTATCCCAACACTTAAGAAAGTGTCG
*
119703103 CCAAAATAGTG
131 CCACAATAGTG
* *
119703114 TCGTCTTAGGACTATACAGAAA-CCAACTCTTATTCAAGCGTTGCCTTAGGCATACAT-CTCCTA
1 TCGTCTTAGGACTACACA-AAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATTCC-A
*
119703177 ACCCTTATACAAAGAGTTGCCTAAAGCGTATATTGGCATGTCTATCCCAACACATAAGAAAGTGT
64 ACCCTTATACAAAGAGTTGCCTAAAGCGTATATTGGCATGTCTATCCCAACACTTAAGAAAGTGT
* *
119703242 TGCCAAAATAGTG
129 CGCCACAATAGTG
* * *
119703255 TCGTCTTAAGACTACACAAAAACCAACTCTTATTCAAGCATTGCCTTAGGCATACATA-TCTCAA
1 TCGTCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATTC-CAA
* * * * * **
119703319 GCCTTATATAAAGAGTTGCCTAAAGCGTATCTTGGCATGTCTATCGCAACACTTAAAAAAGCATC
65 CCCTTATACAAAGAGTTGCCTAAAGCGTATATTGGCATGTCTATCCCAACACTTAAGAAAGTGTC
** *
119703384 GTGATAATAGTG
130 GCCACAATAGTG
* * * * * * *
119703396 TCGTCTTAGGACTAGAC-AAAGCCAACTCTTATTTAAGCGTTGCTTTAAGCATGCATATCCCTAC
1 TCGTCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATTCCAAC
* * * *
119703460 CCTTATACAAAAAGTTGGCTAAAGCGTATGTTGGCCA-GTCTATCCCAACACTTAAGAAAGTGTT
66 CCTTATACAAAGAGTTGCCTAAAGCGTATATTGG-CATGTCTATCCCAACACTTAAGAAAGTGTC
*
119703524 GCC-CCATAAGTG
130 GCCACAAT-AGTG
*
119703536 TCGTATTAG
1 TCGTCTTAG
119703545 CACTGTTTTG
Statistics
Matches: 629, Mismatches: 73, Indels: 22
0.87 0.10 0.03
Matches are distributed among these distances:
139 2 0.00
140 123 0.20
141 499 0.79
142 5 0.01
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.28
Consensus pattern (141 bp):
TCGTCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATTCCAAC
CCTTATACAAAGAGTTGCCTAAAGCGTATATTGGCATGTCTATCCCAACACTTAAGAAAGTGTCG
CCACAATAGTG
Found at i:119703113 original size:282 final size:281
Alignment explanation
Indices: 119702579--119703544 Score: 1156
Period size: 282 Copynumber: 3.5 Consensus size: 281
119702569 AGTGTTGGAT
* * **
119702579 AAAGCCGACTCTTATTTAAGTTTTGCCTTAAGCATACATATCCCAACCCTTATACAAAAAGTTGA
1 AAAGCCAACTCTTATTCAAGCGTTGCCTTAAGCATACATATCCCAACCCTTATACAAAAAGTTG-
* * * * * *
119702644 CC-AAAGCGTATGTTGGAAAGTCTATCCCAACACTT-AGGAA----T---A-TAT-ATATCGTCT
65 CCTAAAGCGTATATTGGCATGTCTATCCCAACACTTAAGAAAGTGTTGCCACAATAATGTCGTCT
** * * * * * *
119702698 TAGGACTGGAC-AAATCCAAATATTATTTAAGCGTTGACTTAGGCATACATATACCAACCCTTAT
130 TAGGACTACACAAAAACCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTAT
* * * *
119702762 ACAAAGAGTTGGCCAAAACATA-AGTTGGCAAGTCTATCCCAACACTTAAGAAAGTGTCGCCACA
195 ACAAAGAGTT-GCTAAAGCATATA-TTGGCATGTCTATCCCAACACTTAAGAAAGTGTCGCCAAA
*
119702826 ATAGTGTCGTCTTAAGACTACACA
258 ATAGTGTCGTCTTAGGACTACACA
* * * *
119702850 AAAGCCAACTCTTATTCAAGCATTGCCTTAGGCATACATATTCCAACCCTTATACAAAGAGTTGC
1 AAAGCCAACTCTTATTCAAGCGTTGCCTTAAGCATACATATCCCAACCCTTATACAAAAAGTTGC
* *
119702915 CTAAAGCGTATATTGGCATGTATATCCCAACACTTAAGAAAGTGTCGCCACAATAATGTCGTCTT
66 CTAAAGCGTATATTGGCATGTCTATCCCAACACTTAAGAAAGTGTTGCCACAATAATGTCGTCTT
* *
119702980 AGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATCTCCCAACCCTTATA
131 AGGACTACACAAAAACCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATA
* * *
119703045 CAAAGAGTTGCTTAAAGCATATATTGGCATGTCTATCCCAAAACATAAGAAAGTGTTGCCAAAAT
196 CAAAGAGTTGC-TAAAGCATATATTGGCATGTCTATCCCAACACTTAAGAAAGTGTCGCCAAAAT
*
119703110 AGTGTCGTCTTAGGACTATACA
260 AGTGTCGTCTTAGGACTACACA
* * * *
119703132 GAAA-CCAACTCTTATTCAAGCGTTGCCTTAGGCATACATCTCCTAACCCTTATACAAAGAGTTG
1 -AAAGCCAACTCTTATTCAAGCGTTGCCTTAAGCATACATATCCCAACCCTTATACAAAAAGTTG
* * *
119703196 CCTAAAGCGTATATTGGCATGTCTATCCCAACACATAAGAAAGTGTTGCCAAAATAGTGTCGTCT
65 CCTAAAGCGTATATTGGCATGTCTATCCCAACACTTAAGAAAGTGTTGCCACAATAATGTCGTCT
* * * *
119703261 TAAGACTACACAAAAACCAACTCTTATTCAAGCATTGCCTTAGGCATACATATCTCAAGCCTTAT
130 TAGGACTACACAAAAACCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTAT
* * * * * ** ** *
119703326 ATAAAGAGTTGCCTAAAGCGTATCTTGGCATGTCTATCGCAACACTTAAAAAAGCATCGTGATAA
195 ACAAAGAGTTG-CTAAAGCATATATTGGCATGTCTATCCCAACACTTAAGAAAGTGTCGCCAAAA
*
119703391 TAGTGTCGTCTTAGGACTAGAC-
259 TAGTGTCGTCTTAGGACTACACA
* * * * *
119703413 AAAGCCAACTCTTATTTAAGCGTTGCTTTAAGCATGCATATCCCTACCCTTATACAAAAAGTTGG
1 AAAGCCAACTCTTATTCAAGCGTTGCCTTAAGCATACATATCCCAACCCTTATACAAAAAGTTGC
* * *
119703478 CTAAAGCGTATGTTGGCCA-GTCTATCCCAACACTTAAGAAAGTGTTGCC-CCATAAGTGTCGTA
66 CTAAAGCGTATATTGG-CATGTCTATCCCAACACTTAAGAAAGTGTTGCCACAATAA-TGTCGTC
119703541 TTAG
129 TTAG
119703545 CACTGTTTTG
Statistics
Matches: 598, Mismatches: 78, Indels: 28
0.85 0.11 0.04
Matches are distributed among these distances:
270 2 0.00
271 86 0.14
272 4 0.01
279 1 0.00
280 8 0.01
281 124 0.21
282 368 0.62
283 5 0.01
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.28
Consensus pattern (281 bp):
AAAGCCAACTCTTATTCAAGCGTTGCCTTAAGCATACATATCCCAACCCTTATACAAAAAGTTGC
CTAAAGCGTATATTGGCATGTCTATCCCAACACTTAAGAAAGTGTTGCCACAATAATGTCGTCTT
AGGACTACACAAAAACCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATA
CAAAGAGTTGCTAAAGCATATATTGGCATGTCTATCCCAACACTTAAGAAAGTGTCGCCAAAATA
GTGTCGTCTTAGGACTACACA
Found at i:119703262 original size:423 final size:421
Alignment explanation
Indices: 119702579--119703526 Score: 1226
Period size: 423 Copynumber: 2.3 Consensus size: 421
119702569 AGTGTTGGAT
* * ** *
119702579 AAAGCCGACTCTTATTTAAGTTTTGCCTTAAGCATACATATCCCAACCCTTATACAAAAAGTTGA
1 AAAGCCAACTCTTATTCAAGCGTTGCCTTAAGCATACATATCCCAACCCTTATACAAAAAGTTGG
* * * ** * * * * *
119702644 CCAAAGCGTATGTTGGAAAGTCTATCCCAACAC-TTAGGAA----T----ATATA-TATCGTCTT
66 CTAAAGCATATATTGGCCAGTCTATCCCAAAACATAAGAAAGTGTTGCCAAAATAGTGTCGTCTT
* * *
119702699 AGGACTGGACAAATCCAAATATTATTTAAGCGTTGACTTAGGCATACATATACCAACCCTTATAC
131 AGGACTAGACAAAACCAAATATTATTCAAGCGTTGACTTAGGCATACATATACCAACCCTTATAC
* *
119702764 AAAGAGTTGGCCAAAACATAAGTTGGCAAGTCTATCCCAACACTTAAGAAAGTGTCGCCACAATA
196 AAAGAGTTGGCCAAAACATAAGTTGGCAAGTCTATCCCAACACATAAGAAAGTGTCGCCAAAATA
*
119702829 GTGTCGTCTTAAGACTACACAAAAGCCAACTCTTATTCAAGCATTGCCTTAGGCATACATAT-TC
261 GTGTCGTCTTAAGACTACACAAAAACCAACTCTTATTCAAGCATTGCCTTAGGCATACATATCT-
* *
119702893 CAACCCTTATACAAAGAGTTGCCTAAAGCGTATATTGGCATGTATATCCCAACACTTAAGAAAGT
325 CAACCCTTATACAAAGAGTTGCCTAAAGCGTATATTGGCATGTATATCCCAACACTTAAAAAAGC
*
119702958 GTCGCCACAATAATGTCGTCTTAGGACTACAC
390 ATCGCCACAATAATGTCGTCTTAGGACTACAC
* * *
119702990 AAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATCTCCCAACCCTTATACAAAGAGTT-
1 -AAAGCCAACTCTTATTCAAGCGTTGCCTTAAGCATACATATCCCAACCCTTATACAAAAAGTTG
119703054 GCTTAAAGCATATATTGG-CATGTCTATCCCAAAACATAAGAAAGTGTTGCCAAAATAGTGTCGT
65 GC-TAAAGCATATATTGGCCA-GTCTATCCCAAAACATAAGAAAGTGTTGCCAAAATAGTGTCGT
* * * * *
119703118 CTTAGGACTATACAGAAACCAACTCTTATTCAAGCGTTGCCTTAGGCATACATCT-CCTAACCCT
128 CTTAGGACTAGACA-AAACCAAATATTATTCAAGCGTTGACTTAGGCATACATATACC-AACCCT
* * * *
119703182 TATACAAAGAGTT-GCCTAAAGCGTATA-TTGGCATGTCTATCCCAACACATAAGAAAGTGTTGC
191 TATACAAAGAGTTGGCC-AAAACATA-AGTTGGCAAGTCTATCCCAACACATAAGAAAGTGTCGC
119703245 CAAAATAGTGTCGTCTTAAGACTACACAAAAACCAACTCTTATTCAAGCATTGCCTTAGGCATAC
254 CAAAATAGTGTCGTCTTAAGACTACACAAAAACCAACTCTTATTCAAGCATTGCCTTAGGCATAC
* * * * *
119703310 ATATCTCAAGCCTTATATAAAGAGTTGCCTAAAGCGTATCTTGGCATGTCTATCGCAACACTTAA
319 ATATCTCAACCCTTATACAAAGAGTTGCCTAAAGCGTATATTGGCATGTATATCCCAACACTTAA
** * * *
119703375 AAAAGCATCGTGATAATAGTGTCGTCTTAGGACTAGAC
384 AAAAGCATCGCCACAATAATGTCGTCTTAGGACTACAC
* * * *
119703413 AAAGCCAACTCTTATTTAAGCGTTGCTTTAAGCATGCATATCCCTACCCTTATACAAAAAGTTGG
1 AAAGCCAACTCTTATTCAAGCGTTGCCTTAAGCATACATATCCCAACCCTTATACAAAAAGTTGG
* * * *
119703478 CTAAAGCGTATGTTGGCCAGTCTATCCCAACACTTAAGAAAGTGTTGCC
66 CTAAAGCATATATTGGCCAGTCTATCCCAAAACATAAGAAAGTGTTGCC
119703527 CCATAAGTGT
Statistics
Matches: 461, Mismatches: 56, Indels: 28
0.85 0.10 0.05
Matches are distributed among these distances:
411 2 0.00
412 81 0.18
413 5 0.01
417 1 0.00
421 4 0.01
422 119 0.26
423 247 0.54
424 2 0.00
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.28
Consensus pattern (421 bp):
AAAGCCAACTCTTATTCAAGCGTTGCCTTAAGCATACATATCCCAACCCTTATACAAAAAGTTGG
CTAAAGCATATATTGGCCAGTCTATCCCAAAACATAAGAAAGTGTTGCCAAAATAGTGTCGTCTT
AGGACTAGACAAAACCAAATATTATTCAAGCGTTGACTTAGGCATACATATACCAACCCTTATAC
AAAGAGTTGGCCAAAACATAAGTTGGCAAGTCTATCCCAACACATAAGAAAGTGTCGCCAAAATA
GTGTCGTCTTAAGACTACACAAAAACCAACTCTTATTCAAGCATTGCCTTAGGCATACATATCTC
AACCCTTATACAAAGAGTTGCCTAAAGCGTATATTGGCATGTATATCCCAACACTTAAAAAAGCA
TCGCCACAATAATGTCGTCTTAGGACTACAC
Found at i:119705001 original size:289 final size:289
Alignment explanation
Indices: 119704482--119705060 Score: 1131
Period size: 289 Copynumber: 2.0 Consensus size: 289
119704472 TATAAATAAA
119704482 ATATAAAGTAATCAATAAAAAAACAAAAACAAACAAGAACTTAAAACGAAGATAAAAAACCTTTG
1 ATATAAAGTAATCAATAAAAAAACAAAAACAAACAAGAACTTAAAACGAAGATAAAAAACCTTTG
119704547 AAGCTTTTCTCTTTTTTTTTTCTCCACCTGTATATGTAATACACTTTTGTATTAAAAAAAAGAAA
66 AAGCTTTTCTCTTTTTTTTTTCTCCACCTGTATATGTAATACACTTTTGTATTAAAAAAAAGAAA
119704612 CCCCCCCTTTTACATTTGGTTTCCTTTCGGCTTTATAGCCGATTACCATAGAAAATATTTTCTGC
131 CCCCCCCTTTTACATTTGGTTTCCTTTCGGCTTTATAGCCGATTACCATAGAAAATATTTTCTGC
119704677 TCTCTTCTCTTGTTTGTTGTTTTTTTGCTCTCTTTTCTTCTGCTTTGCGTGCTTTTTGCAGGTAA
196 TCTCTTCTCTTGTTTGTTGTTTTTTTGCTCTCTTTTCTTCTGCTTTGCGTGCTTTTTGCAGGTAA
*
119704742 CGTCAGAGTCGGTGAACAAAGGCGATGGG
261 CGTCAGAGTAGGTGAACAAAGGCGATGGG
*
119704771 ATATAAAGTAATCAATAAAAAAACAAAAACGAACAAGAACTTAAAACGAAGATAAAAAACCTTTG
1 ATATAAAGTAATCAATAAAAAAACAAAAACAAACAAGAACTTAAAACGAAGATAAAAAACCTTTG
119704836 AAGCTTTTCTCTTTTTTTTTTCTCCACCTGTATATGTAATACACTTTTGTATTAAAAAAAAGAAA
66 AAGCTTTTCTCTTTTTTTTTTCTCCACCTGTATATGTAATACACTTTTGTATTAAAAAAAAGAAA
119704901 CCCCCCCTTTTACATTTGGTTTCCTTTCGGCTTTATAGCCGATTACCATAGAAAATATTTTCTGC
131 CCCCCCCTTTTACATTTGGTTTCCTTTCGGCTTTATAGCCGATTACCATAGAAAATATTTTCTGC
119704966 TCTCTTCTCTTGTTTGTTGTTTTTTTGCTCTCTTTTCTTCTGCTTTGCGTGCTTTTTGCAGGTAA
196 TCTCTTCTCTTGTTTGTTGTTTTTTTGCTCTCTTTTCTTCTGCTTTGCGTGCTTTTTGCAGGTAA
*
119705031 CGTCAGAGTAGGTGAGCAAAGGCGATGGG
261 CGTCAGAGTAGGTGAACAAAGGCGATGGG
119705060 A
1 A
119705061 CGGCGTCTGT
Statistics
Matches: 287, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
289 287 1.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (289 bp):
ATATAAAGTAATCAATAAAAAAACAAAAACAAACAAGAACTTAAAACGAAGATAAAAAACCTTTG
AAGCTTTTCTCTTTTTTTTTTCTCCACCTGTATATGTAATACACTTTTGTATTAAAAAAAAGAAA
CCCCCCCTTTTACATTTGGTTTCCTTTCGGCTTTATAGCCGATTACCATAGAAAATATTTTCTGC
TCTCTTCTCTTGTTTGTTGTTTTTTTGCTCTCTTTTCTTCTGCTTTGCGTGCTTTTTGCAGGTAA
CGTCAGAGTAGGTGAACAAAGGCGATGGG
Found at i:119707262 original size:11 final size:11
Alignment explanation
Indices: 119707246--119707275 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
119707236 ACGACAAATT
119707246 AAAAAAAGAAA
1 AAAAAAAGAAA
119707257 AAAAAAAGAAA
1 AAAAAAAGAAA
*
119707268 AAGAAAAG
1 AAAAAAAG
119707276 GTAGGATGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (11 bp):
AAAAAAAGAAA
Found at i:119715968 original size:12 final size:12
Alignment explanation
Indices: 119715951--119715976 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
119715941 ATCACCGAAT
119715951 AAAAAATAATTA
1 AAAAAATAATTA
119715963 AAAAAATAATTA
1 AAAAAATAATTA
119715975 AA
1 AA
119715977 TTTTTATGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (12 bp):
AAAAAATAATTA
Found at i:119724061 original size:29 final size:29
Alignment explanation
Indices: 119724019--119724076 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
119724009 GCAACACCAA
119724019 TCCTTCTTCG-TTTTCTCGTAATACTTGTC
1 TCCTTCTTCGTTTTTCT-GTAATACTTGTC
*
119724048 TCCTTCTTCGTTTTTCTGTAATATTTGTC
1 TCCTTCTTCGTTTTTCTGTAATACTTGTC
119724077 ACAACAATCA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 21 0.78
30 6 0.22
ACGTcount: A:0.10, C:0.24, G:0.10, T:0.55
Consensus pattern (29 bp):
TCCTTCTTCGTTTTTCTGTAATACTTGTC
Found at i:119725686 original size:24 final size:24
Alignment explanation
Indices: 119725654--119725700 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
119725644 TAGATTATTT
119725654 TATTTTAAACTTT-TATATATTATA
1 TATTTTAAACTTTAT-TATATTATA
119725678 TATTTTAAACTTTATTATATTAT
1 TATTTTAAACTTTATTATATTAT
119725701 GTAGCTTAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 21 0.95
25 1 0.05
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (24 bp):
TATTTTAAACTTTATTATATTATA
Found at i:119726136 original size:22 final size:23
Alignment explanation
Indices: 119726111--119726156 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
119726101 CAACCAAATC
119726111 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
119726133 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
119726156 A
1 A
119726157 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:119726162 original size:23 final size:23
Alignment explanation
Indices: 119726118--119726162 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
119726108 ATCAATTCAA
*
119726118 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
119726141 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
119726163 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:119727712 original size:35 final size:34
Alignment explanation
Indices: 119727614--119727742 Score: 127
Period size: 35 Copynumber: 3.7 Consensus size: 34
119727604 CATGGAAAAG
*
119727614 TGTGAAATGTAGGT-TCGGTATCATCCATACTGA-C
1 TGTGAAATGTAGGTAT-GGTAT-TTCCATACTGAGC
*
119727648 TTGTGAAATGTAAGTATGGTATTATCCATACTGAGC
1 -TGTGAAATGTAGGTATGGTATT-TCCATACTGAGC
* * * *
119727684 TGTGAAATGTAGGTTTGGCATTTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATTT-CCATACTGAGC
**
119727719 TGAAAAATGTAGGTATGGTATTTC
1 TGTGAAATGTAGGTATGGTATTTC
119727743 AATGAGGAAA
Statistics
Matches: 79, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
34 2 0.03
35 75 0.95
36 2 0.03
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (34 bp):
TGTGAAATGTAGGTATGGTATTTCCATACTGAGC
Found at i:119735099 original size:35 final size:35
Alignment explanation
Indices: 119735072--119735199 Score: 166
Period size: 35 Copynumber: 3.5 Consensus size: 35
119735062 CATGGCAAAG
*
119735072 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
119735107 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
119735142 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
**
119735182 TAAGAAATGTAGGTATGG
1 TGTGAAATGTAGGTATGG
119735200 CATTTCCCAT
Statistics
Matches: 82, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
35 51 0.62
38 3 0.04
40 28 0.34
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.34
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Found at i:119735191 original size:75 final size:74
Alignment explanation
Indices: 119735072--119735241 Score: 210
Period size: 75 Copynumber: 2.4 Consensus size: 74
119735062 CATGGCAAAG
** *
119735072 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
119735131 CCATACTGAGC
65 CCATACCG-GC
119735142 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
119735207 CATACCGGT
66 CATACCGGC
**
119735216 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
119735242 TGAGGAAAAC
Statistics
Matches: 87, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
70 18 0.21
73 8 0.09
74 22 0.25
75 39 0.45
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (74 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGGC
Found at i:119735210 original size:35 final size:35
Alignment explanation
Indices: 119735075--119735239 Score: 158
Period size: 35 Copynumber: 4.6 Consensus size: 35
119735065 GGCAAAGTGT
* **
119735075 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
119735110 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
119735145 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
119735185 GAAATGTAGGTATGGCATTTCCCATACCG-GTTGAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTT-AA
119735220 -AAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
119735240 AATGAGGAAA
Statistics
Matches: 115, Mismatches: 8, Indels: 15
0.83 0.06 0.11
Matches are distributed among these distances:
34 22 0.19
35 62 0.54
39 2 0.02
40 29 0.25
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:119745695 original size:64 final size:64
Alignment explanation
Indices: 119745589--119745781 Score: 287
Period size: 64 Copynumber: 3.0 Consensus size: 64
119745579 TATCATTCAT
* * * * *
119745589 AACACATCTAGTTAGGAGCATTTGGTTCATTTCGGTCTTAGCATCCTGATTATTTGACATATGC
1 AACACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGC
119745653 AACACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGC
1 AACACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGC
* * ** * *
119745717 ATCACATCTAGTTAGAAGCATTTGATTCATTTCGATCAGGGCATCCTAATTATTTGGCGTAAGC
1 AACACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGC
119745781 A
1 A
119745782 TAGATACATG
Statistics
Matches: 118, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 118 1.00
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (64 bp):
AACACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGC
Found at i:119745903 original size:45 final size:44
Alignment explanation
Indices: 119745852--119746057 Score: 130
Period size: 45 Copynumber: 4.7 Consensus size: 44
119745842 AAATTCACAG
* *
119745852 ATCTTGTCTCCCTGAAGTTGCAGTGGAGCAGATCAAAGATGGCGA
1 ATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCAAAGACGGC-A
*** * ** ** *
119745897 ATCTTGTCTCCCT-AACCAGTAGTGGAACAGATTTAAG-CCACC
1 ATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCAAAGACGGCA
* * ** * ** * ** **
119745939 ATCCTATCTCCCT-AAGCAGTAGTGGAGTAGGTTGAAGATTGCA
1 ATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCAAAGACGGCA
* *
119745982 GATCTTGTCTCCCTGAAGTTACAGTGAAACAGATCAAAGACGGCGA
1 -ATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCAAAGACGGC-A
*
119746028 ATCTTGTCTCCCTGAAGTTGCAGTAGAACA
1 ATCTTGTCTCCCTGAAGTTGCAGTGGAACA
119746058 AATTGGAGCT
Statistics
Matches: 118, Mismatches: 39, Indels: 8
0.72 0.24 0.05
Matches are distributed among these distances:
42 30 0.25
43 2 0.02
44 28 0.24
45 57 0.48
46 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (44 bp):
ATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCAAAGACGGCA
Found at i:119746180 original size:44 final size:44
Alignment explanation
Indices: 119746123--119746364 Score: 200
Period size: 44 Copynumber: 5.5 Consensus size: 44
119746113 AAAACAAACT
* * ** * *
119746123 TTATCTCCTTGAAGTTGCAGCGGAGTAGGTTGAAGTTATAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAAGATATAAGTC
* *
119746167 TTATCTCCCTGAAGTTTCAGTGGAGTAGACTAAAGATATCGAA-CC
1 TTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAAGATAT--AAGTC
* * ** * * *
119746212 TTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAAGATATAAGTC
* **
119746256 TTATCTCCTTGAAGTTGCAGTGGAGTAGACTAAAGATAGCAGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAAGATATAAG-TC
* * * * * *
119746301 TTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTATAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAAGATATAAGTC
* *
119746345 CTATAC-CTCTGAAGTTGCAG
1 TTAT-CTCCCTGAAGTTGCAG
119746365 CAGGTCGGAT
Statistics
Matches: 157, Mismatches: 36, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
43 2 0.01
44 85 0.54
45 68 0.43
46 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (44 bp):
TTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAAGATATAAGTC
Found at i:119746227 original size:45 final size:44
Alignment explanation
Indices: 119746081--119746335 Score: 178
Period size: 44 Copynumber: 5.8 Consensus size: 44
119746071 AATTACAGAT
** * * * *
119746081 CTTATCTCTTTGAAGTTGCAGTAGAGCAGA-TCAA-A-ACAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAAGATACAAGC
* * * ** * * * *
119746122 TTTATCTCCTTGAAGTTGCAGCGGAGTAGGTTGAAGTTATAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAAGATACAAGC
*
119746166 CTTATCTCCCTGAAGTTTCAGTGGAGTAGACTAAAGATATCGAA-C
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAAGATA-C-AAGC
* * ** * * *
119746211 CTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAAGATACAAGC
* *
119746255 CTTATCTCCTTGAAGTTGCAGTGGAGTAGACTAAAGATAGC-AGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAAGATA-CAAG-C
* * * *
119746300 CTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAAG
119746336 CTATAAATCC
Statistics
Matches: 165, Mismatches: 41, Indels: 12
0.76 0.19 0.06
Matches are distributed among these distances:
41 24 0.15
42 3 0.02
43 2 0.01
44 69 0.42
45 65 0.39
46 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAAGATACAAGC
Found at i:119746321 original size:89 final size:90
Alignment explanation
Indices: 119746123--119746511 Score: 317
Period size: 89 Copynumber: 4.3 Consensus size: 90
119746113 AAAACAAACT
* * * * *
119746123 TTATCTCCTTGAAGTTGCAGCGGAGTAGGTTGAAGTTATAAGTCTTATCTCCCTGAAGTTTCAGT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGT
* *
119746188 GGAGTAGACTAAAGATATC-GAACC
66 GGAGTAGACTAAAGATAACAGAATC
* *
119746212 TTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCTTGAAGTTGCAGT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGT
*
119746277 GGAGTAGACTAAAGATAGCAG-ATC
66 GGAGTAGACTAAAGATAACAGAATC
* * * * * * * * *
119746301 TTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTATAAATCCTATAC-CTCTGAAGTTGCAG
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTAT-CTCCCTGAAGTT---G
* ** *
119746365 CAGGTCGGA-TCAAATCT-ACCATGAC-GAATC
62 CA-GT-GGAGT-AGA-CTAAAGATAACAGAATC
* * * * * * *
119746395 TTATCTCCCTGAAGTTGTAGTGGAGTAGGTTGAAGATGCATGTCTTGTCTCCCTAAAGTTGCAGT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGT
* * *
119746460 GGAGCT-GACTGAATATAACA-CATC
66 GGAG-TAGACTAAAGATAACAGAATC
** *
119746484 TTATCTCTTTGAAGTTGCAGTAGAGCAG
1 TTATCTCCCTGAAGTTGCAGTGGAGCAG
119746512 ATTAAAGCCA
Statistics
Matches: 235, Mismatches: 50, Indels: 30
0.75 0.16 0.10
Matches are distributed among these distances:
88 2 0.01
89 160 0.68
90 4 0.02
91 4 0.02
92 3 0.01
93 5 0.02
94 55 0.23
95 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (90 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGT
GGAGTAGACTAAAGATAACAGAATC
Found at i:119748470 original size:24 final size:24
Alignment explanation
Indices: 119748438--119748484 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
119748428 TAGATTATTT
119748438 TATTTTAAACTTT-TATATATTATA
1 TATTTTAAACTTTAT-TATATTATA
119748462 TATTTTAAACTTTATTATATTAT
1 TATTTTAAACTTTATTATATTAT
119748485 GTAGCTTATG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 21 0.95
25 1 0.05
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (24 bp):
TATTTTAAACTTTATTATATTATA
Found at i:119763788 original size:41 final size:41
Alignment explanation
Indices: 119763737--119763818 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
119763727 CTTTAATTTG
*
119763737 TCGTTCTTGATGCATGTGATGTGGTGTGTTCTCAATTGTCA
1 TCGTTCTTGATGCATGTGATGTGGTGTGTTCTCAATCGTCA
119763778 TCGTTCTTGATGCATGTGATGTGGTGTGTTCTCAATCGTCA
1 TCGTTCTTGATGCATGTGATGTGGTGTGTTCTCAATCGTCA
119763819 CCATGGGGAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.15, C:0.16, G:0.27, T:0.43
Consensus pattern (41 bp):
TCGTTCTTGATGCATGTGATGTGGTGTGTTCTCAATCGTCA
Found at i:119767664 original size:14 final size:14
Alignment explanation
Indices: 119767642--119767679 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
119767632 CTAAAAAAGT
*
119767642 AAATCATTTTCTAA
1 AAATTATTTTCTAA
119767656 AAATTATTTTCTAA
1 AAATTATTTTCTAA
*
119767670 AAGTTATTTT
1 AAATTATTTT
119767680 TAATTAAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.39, C:0.08, G:0.03, T:0.50
Consensus pattern (14 bp):
AAATTATTTTCTAA
Found at i:119771117 original size:39 final size:39
Alignment explanation
Indices: 119771009--119771120 Score: 143
Period size: 39 Copynumber: 2.9 Consensus size: 39
119770999 GTTTCAGTTC
* * * *
119771009 AGCACTTATGTGCTTCAATTAGCCTTCGGACTTTCGTTT
1 AGCACTTATGTGCTTCAGTTAGCCTTCGGGCTTCCATTT
* *
119771048 AGCACTTATATGCTTCAGTTAGCCTCCGGGCTTCCATTT
1 AGCACTTATGTGCTTCAGTTAGCCTTCGGGCTTCCATTT
* **
119771087 AGCACTTATGTGCTTCAGCTAGATTTCGGGCTTC
1 AGCACTTATGTGCTTCAGTTAGCCTTCGGGCTTC
119771121 AGATCACGAT
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 62 1.00
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.38
Consensus pattern (39 bp):
AGCACTTATGTGCTTCAGTTAGCCTTCGGGCTTCCATTT
Found at i:119781925 original size:18 final size:18
Alignment explanation
Indices: 119781880--119781945 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 18
119781870 TGCCATCAAT
*
119781880 TCCTCGTCTTCCTTCCTACC
1 TCCTCTTCTTCC-TCCT-CC
*
119781900 TTCTTCTTCTTCCTCCTCC
1 -TCCTCTTCTTCCTCCTCC
* *
119781919 TCCTCTTCGTCGTCCTCC
1 TCCTCTTCTTCCTCCTCC
*
119781937 TCTTCTTCT
1 TCCTCTTCT
119781946 GCTTCTTCTT
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
18 22 0.58
19 2 0.05
20 4 0.11
21 10 0.26
ACGTcount: A:0.02, C:0.47, G:0.05, T:0.47
Consensus pattern (18 bp):
TCCTCTTCTTCCTCCTCC
Found at i:119786307 original size:46 final size:46
Alignment explanation
Indices: 119786120--119786333 Score: 173
Period size: 46 Copynumber: 4.7 Consensus size: 46
119786110 GGGTGCCTTG
* * *** * *
119786120 GTGTCTTTCAACCATGGTCTTATTTATTAT-TGAATTGATGCTATA
1 GTGTCTTTTAACCATGGTCTTATTTATTTTCTGTCGTGTTGCCATA
*
119786165 GTGTCTTTTAACCATGGTCTTATTCATTTTCTGTCGTGTTGCCATTA
1 GTGTCTTTTAACCATGGTCTTATTTATTTTCTGTCGTGTTGCCA-TA
* * * * * * * *
119786212 -CGTATTTT-ACCTATGGCCTTATTTATTTTTTATCTTGTCGCCATT
1 GTGTCTTTTAACC-ATGGTCTTATTTATTTTCTGTCGTGTTGCCATA
* * *
119786257 GTGTCTTTTAACCATAGTTTTATTTATTTTCCGTCGTGTTGCCATA
1 GTGTCTTTTAACCATGGTCTTATTTATTTTCTGTCGTGTTGCCATA
* * * * *
119786303 GTGTCTTTCAACTATGTTCATATTCATTTTC
1 GTGTCTTTTAACCATGGTCTTATTTATTTTC
119786334 CACCGAGTTG
Statistics
Matches: 129, Mismatches: 35, Indels: 9
0.75 0.20 0.05
Matches are distributed among these distances:
45 31 0.24
46 93 0.72
47 5 0.04
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.50
Consensus pattern (46 bp):
GTGTCTTTTAACCATGGTCTTATTTATTTTCTGTCGTGTTGCCATA
Found at i:119786332 original size:92 final size:92
Alignment explanation
Indices: 119786165--119786332 Score: 214
Period size: 92 Copynumber: 1.8 Consensus size: 92
119786155 TGATGCTATA
* * *
119786165 GTGTCTTTTAACCATGGTCTTATTCATTTTCTGTCGTGTTGCCATTACGTATTTTACCTATGGCC
1 GTGTCTTTTAACCATAGTCTTATTCATTTTCCGTCGTGTTGCCATTACGTATTTTAACTATGGCC
* *
119786230 TTATTTATTTTTTATCTTGTCGCCATT
66 ATATTCATTTTTTATCTTGTCGCCATT
* * * *
119786257 GTGTCTTTTAACCATAGTTTTATTTATTTTCCGTCGTGTTGCCA-TA-GTGTCTTTCAACTATGT
1 GTGTCTTTTAACCATAGTCTTATTCATTTTCCGTCGTGTTGCCATTACGTAT-TTT-AACTATGG
*
119786320 TCATATTCATTTT
64 CCATATTCATTTT
119786333 CCACCGAGTT
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
90 3 0.05
91 5 0.08
92 56 0.88
ACGTcount: A:0.17, C:0.18, G:0.14, T:0.51
Consensus pattern (92 bp):
GTGTCTTTTAACCATAGTCTTATTCATTTTCCGTCGTGTTGCCATTACGTATTTTAACTATGGCC
ATATTCATTTTTTATCTTGTCGCCATT
Found at i:119786334 original size:46 final size:46
Alignment explanation
Indices: 119786120--119786377 Score: 164
Period size: 46 Copynumber: 5.6 Consensus size: 46
119786110 GGGTGCCTTG
* * ** * *
119786120 GTGTCTTTCAACCATGGTCTTATTTATTATTGAAT--TGATGCTATA
1 GTGTCTTTCAACTATGGTCTTATTCATT-TTCCATCGTGTTGCCATA
* * **
119786165 GTGTCTTTTAACCATGGTCTTATTCATTTTCTGTCGTGTTGCCATTA
1 GTGTCTTTCAACTATGGTCTTATTCATTTTCCATCGTGTTGCCA-TA
* * * * ** * * *
119786212 CGTAT-TTT-ACCTATGGCCTTATTTATTTTTTATCTTGTCGCCATT
1 -GTGTCTTTCAACTATGGTCTTATTCATTTTCCATCGTGTTGCCATA
* * * * * *
119786257 GTGTCTTTTAACCATAGTTTTATTTATTTTCCGTCGTGTTGCCATA
1 GTGTCTTTCAACTATGGTCTTATTCATTTTCCATCGTGTTGCCATA
* * * * *
119786303 GTGTCTTTCAACTATGTTCATATTCATTTTCCACCGAGTTGTCATA
1 GTGTCTTTCAACTATGGTCTTATTCATTTTCCATCGTGTTGCCATA
* * *
119786349 ATATCTTTCAATTATGGTCTTATTCATTT
1 GTGTCTTTCAACTATGGTCTTATTCATTT
119786378 GATTTGTGAT
Statistics
Matches: 162, Mismatches: 45, Indels: 11
0.74 0.21 0.05
Matches are distributed among these distances:
44 6 0.04
45 30 0.19
46 118 0.73
47 5 0.03
48 3 0.02
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (46 bp):
GTGTCTTTCAACTATGGTCTTATTCATTTTCCATCGTGTTGCCATA
Found at i:119789656 original size:5 final size:5
Alignment explanation
Indices: 119789642--119789692 Score: 66
Period size: 5 Copynumber: 9.6 Consensus size: 5
119789632 AAAGAGAAAG
*
119789642 ATTTT ATTTT GTTTT ATTTT ATTATTT ATTTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT A-T-TTT A-TTTT ATTTT ATTTT ATTTT
119789690 ATT
1 ATT
119789693 AATTTAGGTT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
5 31 0.74
6 5 0.12
7 6 0.14
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (5 bp):
ATTTT
Found at i:119789674 original size:23 final size:22
Alignment explanation
Indices: 119789644--119789687 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
119789634 AGAGAAAGAT
*
119789644 TTTATTTTGTTTTATTTTATTA
1 TTTATTTTATTTTATTTTATTA
119789666 TTTATTTTTATTTTATTTTATT
1 TTTA-TTTTATTTTATTTTATT
119789688 TTATTAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.18, C:0.00, G:0.02, T:0.80
Consensus pattern (22 bp):
TTTATTTTATTTTATTTTATTA
Found at i:119789684 original size:28 final size:29
Alignment explanation
Indices: 119789643--119789698 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 29
119789633 AAGAGAAAGA
*
119789643 TTTTATTTTGTTTTATTTTATT-ATTTAT
1 TTTTATTTTATTTTATTTTATTAATTTAT
119789671 TTTTATTTTATTTTATTTTATTAATTTA
1 TTTTATTTTATTTTATTTTATTAATTTA
119789699 GGTTAGGCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 21 0.81
29 5 0.19
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (29 bp):
TTTTATTTTATTTTATTTTATTAATTTAT
Found at i:119797400 original size:4 final size:4
Alignment explanation
Indices: 119797391--119797445 Score: 96
Period size: 4 Copynumber: 14.2 Consensus size: 4
119797381 GAGCAAACAT
119797391 GAAA GAAA G-AA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
119797438 GAAA -AAA G
1 GAAA GAAA G
119797446 GGAAATTTGA
Statistics
Matches: 49, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
3 6 0.12
4 43 0.88
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:119804821 original size:30 final size:30
Alignment explanation
Indices: 119804787--119804852 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 30
119804777 TACTCATAAT
*
119804787 AATCTCAAAAGCAATCAAAAGACAATCTTC
1 AATCTCAAAAGAAATCAAAAGACAATCTTC
* *
119804817 AATCTCCAAAGAAATCAAAAGAGAATCTTC
1 AATCTCAAAAGAAATCAAAAGACAATCTTC
119804847 AATCTC
1 AATCTC
119804853 GATGGGAACC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.48, C:0.23, G:0.08, T:0.21
Consensus pattern (30 bp):
AATCTCAAAAGAAATCAAAAGACAATCTTC
Found at i:119807983 original size:50 final size:51
Alignment explanation
Indices: 119807906--119808034 Score: 206
Period size: 50 Copynumber: 2.5 Consensus size: 51
119807896 GACCATGGCA
* *
119807906 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
*
119807957 A-AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* *
119808007 ACAAGTGAAAAGTGGTAGCTTCGGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
119808035 TTGATCAGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
50 47 0.66
51 24 0.34
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:119808048 original size:31 final size:31
Alignment explanation
Indices: 119808010--119808158 Score: 217
Period size: 31 Copynumber: 4.8 Consensus size: 31
119808000 ACAAATGACA
*
119808010 AGTGAAAAGTGGTAGCTTCGGCTACTTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
119808041 AGTGAAAAGTGGTAGCTTCTGCTATCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
119808072 AGTGAAAAATGGTAGCTCCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
119808103 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
119808134 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
119808159 AAGTGACAAG
Statistics
Matches: 106, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 106 1.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:119808262 original size:47 final size:46
Alignment explanation
Indices: 119808176--119808350 Score: 138
Period size: 47 Copynumber: 3.7 Consensus size: 46
119808166 AAGTGATTTC
* * * * *
119808176 CGTATGAGACCATATTTGGGATATGACATCGATGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCGATGAGATATATGATA
* *
119808222 CTGTATAAGACCATATCTGGGATATGGCATC-AGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCGA-TGAGATATATGATA
* * * * *
119808269 CGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTA
1 CGTATAAGACCATATCTGGGATATGGCATCG--ATGAGATATATGA-TA
* * * *
119808318 CGTGTAAGATCATAGT-TGGGCTATGACATCGAT
1 CGTATAAGACCATA-TCTGGGATATGGCATCGAT
119808351 ATATAAAGAT
Statistics
Matches: 107, Mismatches: 15, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
46 28 0.26
47 39 0.36
48 11 0.10
49 29 0.27
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCGATGAGATATATGATA
Found at i:119808288 original size:46 final size:49
Alignment explanation
Indices: 119808227--119808352 Score: 168
Period size: 49 Copynumber: 2.6 Consensus size: 49
119808217 TGCTACTGTA
* * *
119808227 TAAGACCATATCTGGGATATGGCATC-A-GTGAGATATGTGATT-CGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGAGATATGTGATTACGTG
*
119808273 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGAGATATGTGATTACGTG
* * *
119808322 TAAGATCATAGTTGGGCTATGACATCGATAT
1 TAAGACCATAGCTGGGCTATGGCATCGATAT
119808353 ATAAAGATGT
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
46 24 0.34
47 1 0.01
48 13 0.19
49 32 0.46
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (49 bp):
TAAGACCATAGCTGGGCTATGGCATCGATATGAGATATGTGATTACGTG
Found at i:119810501 original size:22 final size:21
Alignment explanation
Indices: 119810476--119810516 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
119810466 TTATCCATTC
*
119810476 TAAATTGTTTTATTATGTATTT
1 TAAATTATTTT-TTATGTATTT
*
119810498 TAAATTATTTTTTTTGTAT
1 TAAATTATTTTTTATGTAT
119810517 ATTATTACTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.66
Consensus pattern (21 bp):
TAAATTATTTTTTATGTATTT
Found at i:119814782 original size:19 final size:20
Alignment explanation
Indices: 119814755--119814797 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
119814745 TCTTTTTGCA
* *
119814755 TTCATTCATTTGCATTACAT
1 TTCATTCATATGCATTAAAT
119814775 TTCA-TCATATGCATTAAAT
1 TTCATTCATATGCATTAAAT
119814794 TTCA
1 TTCA
119814798 CGAAAAGACC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.30, C:0.19, G:0.05, T:0.47
Consensus pattern (20 bp):
TTCATTCATATGCATTAAAT
Found at i:119823335 original size:44 final size:44
Alignment explanation
Indices: 119823272--119823356 Score: 134
Period size: 44 Copynumber: 1.9 Consensus size: 44
119823262 AGTTACCAGG
* * *
119823272 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTC
1 GCAAACCTCATCTCCCTGAAGATGCAGTGGAGCAGATTGAAGTC
*
119823316 GCAAACCTCATCTCCCTGAAGATGCAGTGGAGCAGGTTGAA
1 GCAAACCTCATCTCCCTGAAGATGCAGTGGAGCAGATTGAA
119823357 ATTATCAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (44 bp):
GCAAACCTCATCTCCCTGAAGATGCAGTGGAGCAGATTGAAGTC
Found at i:119823346 original size:227 final size:225
Alignment explanation
Indices: 119822947--119823370 Score: 557
Period size: 227 Copynumber: 1.9 Consensus size: 225
119822937 GAGCATATCG
***
119822947 AAGATAGCAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTATGGCTAAATCCTATACCTCT
1 AAGATAGCAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAACTAAATCCTATACCTCT
* * * *
119823012 GAAGATGCAGTGGGTCAGATCAAATCTATCATGGCAAATCTTATCTATCTGAAATTGCAGTAGAG
66 GAAGATGCAGTAGGTCAGATCAAATCTACCAGGGCAAATCTTATCTACCTGAAATTGCAGTAGAG
* * * *
119823077 CAGATTAAAGCCATTAGCATTATCTCCCTGAAGATGCAGTGGAG-TGGTTTGAAATTACCAAGTC
131 CAGATTAAAGCCA-TAACATCATCTCCCTGAAGATGCAGTGGAGCAGG-TTGAAATTACCAAATC
119823141 TTAGTTCCCTGAAGTTGCAGTGGAATAGACTA
194 TTAGTTCCCTGAAGTTGCAGTGGAATAGACTA
* * * *
119823173 AAGATAGCAAATCTTATTTCTCTGAAGTTGTAGTAGAGCAGATTAAAACTATAAATCCTATGCCT
1 AAGATAGCAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAAC--TAAATCCTATACCT
* * * * * *
119823238 CTGAAGTTGCAGTAGGTCGGATCAAGT-TACCAGGGCAAATCTTATCTCCCTGAAGTTGCAGTGG
64 CTGAAGATGCAGTAGGTCAGATCAAATCTACCAGGGCAAATCTTATCTACCTGAAATTGCAGTAG
* * *
119823302 AGCAGATTGAAGTCGCA-AACCTCATCTCCCTGAAGATGCAGTGGAGCAGGTTGAAATTATCAAA
129 AGCAGATTAAAG-C-CATAACATCATCTCCCTGAAGATGCAGTGGAGCAGGTTGAAATTACCAAA
119823366 TCTTA
192 TCTTA
119823371 AAACCCTTTG
Statistics
Matches: 169, Mismatches: 24, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
226 43 0.25
227 85 0.50
228 39 0.23
229 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (225 bp):
AAGATAGCAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTAAAACTAAATCCTATACCTCT
GAAGATGCAGTAGGTCAGATCAAATCTACCAGGGCAAATCTTATCTACCTGAAATTGCAGTAGAG
CAGATTAAAGCCATAACATCATCTCCCTGAAGATGCAGTGGAGCAGGTTGAAATTACCAAATCTT
AGTTCCCTGAAGTTGCAGTGGAATAGACTA
Found at i:119840849 original size:27 final size:27
Alignment explanation
Indices: 119840784--119840853 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
119840774 CAGATTTTAG
* *
119840784 ATTGTTGGATTTTGATATATGTCTTGA
1 ATTGTTGGATATTGATATATGTCTTAA
* *
119840811 ATTGGTTAGATATTGAT-TATGTTTTAA
1 ATT-GTTGGATATTGATATATGTCTTAA
119840838 CATTGTTGGATATTGA
1 -ATTGTTGGATATTGA
119840854 ATTGATTATT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 22 0.61
28 14 0.39
ACGTcount: A:0.26, C:0.03, G:0.21, T:0.50
Consensus pattern (27 bp):
ATTGTTGGATATTGATATATGTCTTAA
Found at i:119840858 original size:32 final size:33
Alignment explanation
Indices: 119840822--119840889 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 33
119840812 TTGGTTAGAT
119840822 ATTG-ATTATGTTTTAA-CATTGTTGGATATTGA
1 ATTGTATTATGTTTTAAGC-TTGTTGGATATTGA
119840854 ATTGATTATTATGTTTTAAGCTTGTTGGATATTGA
1 ATTG--TATTATGTTTTAAGCTTGTTGGATATTGA
119840889 A
1 A
119840890 ATTATTGATA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
32 4 0.12
35 27 0.84
36 1 0.03
ACGTcount: A:0.28, C:0.03, G:0.19, T:0.50
Consensus pattern (33 bp):
ATTGTATTATGTTTTAAGCTTGTTGGATATTGA
Found at i:119842260 original size:34 final size:35
Alignment explanation
Indices: 119842194--119842260 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
119842184 CAAACACCAG
119842194 AAAATATTTTCCAGTAAGTCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAGTCATTTTACAGAAAAGT
* *
119842229 AAAATATTTTCCAG-AATTCATTTTACGGAAAA
1 AAAATATTTTCCAGTAAGTCATTTTACAGAAAA
119842261 CATTTTACAG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 16 0.53
35 14 0.47
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.34
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAGTCATTTTACAGAAAAGT
Found at i:119844994 original size:503 final size:497
Alignment explanation
Indices: 119844053--119845056 Score: 1909
Period size: 503 Copynumber: 2.0 Consensus size: 497
119844043 GAACAGCTGA
119844053 TGGGACTGGAAAAGAGAGTCTTAATATTAAGGATTTGATCTAAACACTAAACATGGAGCCAGCCA
1 TGGGACTGGAAAAGAGAGTCTTAATATTAAGGATTTGATCTAAACACTAAACATGGAGCCAGCCA
*
119844118 GAGCACAAAGGAAAGATAGTGATCTGAGACATAAAAATCATCGAAGTGAAGAACAGCAGCCAAAA
66 GAACACAAAGGAAAGATAGTGATCTGAGACATAAAAATCATCGAAGTGAAGAACAGCAGCCAAAA
119844183 TATCCAGATCCAGATCATCATCATTGTTTCAGACATGACAATTTCTCATACTGTAACAAGTTAAC
131 TATCCAGATCCAGATCATCATCATTGTTTCAGACATGACAATTTCTCATACTGTAACAAGTTAAC
119844248 AACGGCAATAACATTGTAACGATCAAAAAGAAAAGGTCATATACTAGTTTGCTACTACCATTCCT
196 AACGGCAATAACATTGTAACGATCAAAAAGAAAAGGTCATATACTAGTTTGCTACTACCATTCCT
*
119844313 AAACTTAAAGGGTGACTGGTTTGATCATAACTCAAATCACTCATCTTCCGGTGGAGGGATGAGGA
261 AAACTTAAAGGGTGACAGGTTTGATCATAACTCAAATCACTCATCTTCCGGTGGAGGGATGAGGA
*
119844378 TCCAACCCACCATCTTTCGAATATTGAAAATTTAAATTAAAAAGTGGAAAACAAAGAAGACAGAT
326 TCCAACCCACCATCTTTCGAATATTGAAAATTTAAATTAAAAAATGGAAAACAAAGAAGACAGAT
*
119844443 AATTTGTAGTGAGATATACCTGCAAGCAGCGTTTTTCTTATTCTGATCTTGTTATATGTTTTGTG
391 AATTTGTAGTGAGATATAACTGCAAGCAGCGTTTTTCTTATTCTGATCTTGTTATATGTTTTGTG
119844508 ATAAGAAGAAAGCGGACACTGGCCAGGGGGATTATATAAGAT
456 ATAAGAAGAAAGCGGACACTGGCCAGGGGGATTATATAAGAT
119844550 TGGGACTGGAAAAGAGAGTCTTAATATTAAGGATTTGATCTAAACACTAAACATGGAGCCAGCCA
1 TGGGACTGGAAAAGAGAGTCTTAATATTAAGGATTTGATCTAAACACTAAACATGGAGCCAGCCA
119844615 GAACACAAAGGAAAGATAGTGATCTGAGACATAAAAATCATCGAAGTGAAGAACAGCAGCCAAAA
66 GAACACAAAGGAAAGATAGTGATCTGAGACATAAAAATCATCGAAGTGAAGAACAGCAGCC-AAA
*
119844680 TATCCAGATCCAGATCCAGATCATCATCATTGTTTCAGACATTACAATTTCTCATACTGTAACAA
130 -AT----ATCCAGATCCAGATCATCATCATTGTTTCAGACATGACAATTTCTCATACTGTAACAA
119844745 GTTAACAACGGCAATAACATTGTAACGATCAAAAAGAAAAGGTCATATACTAGTTTGCTACTACC
190 GTTAACAACGGCAATAACATTGTAACGATCAAAAAGAAAAGGTCATATACTAGTTTGCTACTACC
119844810 ATTCCTAAACTTAAAGGGTGACAGGTTTGATCATAACTCAAATCACTCATCTTCCGGTGGAGGGA
255 ATTCCTAAACTTAAAGGGTGACAGGTTTGATCATAACTCAAATCACTCATCTTCCGGTGGAGGGA
119844875 TGAGGATCCAACCCACCATCTTTCGAATATTGAAAATTTAAATTAAAAAATGGAAAACAAAGAAG
320 TGAGGATCCAACCCACCATCTTTCGAATATTGAAAATTTAAATTAAAAAATGGAAAACAAAGAAG
119844940 ACAGATAATTTGTAGTGAGATATAACTGCAAGCAGCGTTTTTCTTATTCTGATCTTGTTATATGT
385 ACAGATAATTTGTAGTGAGATATAACTGCAAGCAGCGTTTTTCTTATTCTGATCTTGTTATATGT
119845005 TTTGTGATAAGAAGAAAGCGGACACTGGCCAGGGGGATTATATAAGAT
450 TTTGTGATAAGAAGAAAGCGGACACTGGCCAGGGGGATTATATAAGAT
119845053 TGGG
1 TGGG
119845057 GAAATGATAA
Statistics
Matches: 496, Mismatches: 5, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
497 125 0.25
498 3 0.01
499 2 0.00
503 366 0.74
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (497 bp):
TGGGACTGGAAAAGAGAGTCTTAATATTAAGGATTTGATCTAAACACTAAACATGGAGCCAGCCA
GAACACAAAGGAAAGATAGTGATCTGAGACATAAAAATCATCGAAGTGAAGAACAGCAGCCAAAA
TATCCAGATCCAGATCATCATCATTGTTTCAGACATGACAATTTCTCATACTGTAACAAGTTAAC
AACGGCAATAACATTGTAACGATCAAAAAGAAAAGGTCATATACTAGTTTGCTACTACCATTCCT
AAACTTAAAGGGTGACAGGTTTGATCATAACTCAAATCACTCATCTTCCGGTGGAGGGATGAGGA
TCCAACCCACCATCTTTCGAATATTGAAAATTTAAATTAAAAAATGGAAAACAAAGAAGACAGAT
AATTTGTAGTGAGATATAACTGCAAGCAGCGTTTTTCTTATTCTGATCTTGTTATATGTTTTGTG
ATAAGAAGAAAGCGGACACTGGCCAGGGGGATTATATAAGAT
Found at i:119846157 original size:21 final size:21
Alignment explanation
Indices: 119846133--119846176 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
119846123 AATTAGAATA
119846133 TTAGAAACAAGTTATCCTATC
1 TTAGAAACAAGTTATCCTATC
119846154 TTAGAAACAAGTTATCCTATC
1 TTAGAAACAAGTTATCCTATC
119846175 TT
1 TT
119846177 GTTCAAGCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.36
Consensus pattern (21 bp):
TTAGAAACAAGTTATCCTATC
Found at i:119847187 original size:21 final size:21
Alignment explanation
Indices: 119847161--119847217 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
119847151 ATATCCTTTT
* *
119847161 CCGGTTCAGTATTTTTGGTGC
1 CCGGTTCAGTATTTTTAGTGA
*
119847182 CCGGTTCAGT-TGTTTTAGTTA
1 CCGGTTCAGTAT-TTTTAGTGA
119847203 CCGGTTCAG-ATTTTT
1 CCGGTTCAGTATTTTT
119847218 TATGTGTTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
20 5 0.16
21 26 0.84
ACGTcount: A:0.12, C:0.18, G:0.25, T:0.46
Consensus pattern (21 bp):
CCGGTTCAGTATTTTTAGTGA
Found at i:119847543 original size:26 final size:26
Alignment explanation
Indices: 119847514--119847566 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
119847504 TCAGATGGGC
119847514 CCTTTTATTATTATTTTGTTCTCTTA
1 CCTTTTATTATTATTTTGTTCTCTTA
119847540 CCTTTTATTATTATTTTGTTCTCTTA
1 CCTTTTATTATTATTTTGTTCTCTTA
119847566 C
1 C
119847567 TTTGGGCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.15, C:0.17, G:0.04, T:0.64
Consensus pattern (26 bp):
CCTTTTATTATTATTTTGTTCTCTTA
Found at i:119858469 original size:78 final size:78
Alignment explanation
Indices: 119858340--119858490 Score: 239
Period size: 78 Copynumber: 1.9 Consensus size: 78
119858330 CTCATATTCT
* * *
119858340 ACCATTAAACCATGATCCCTTGATCTCACCAGCTGGGAGAGTCGGTGATCATGTTGATAATGATC
1 ACCATTAAACCATGATCCCTTGATCGCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGATC
119858405 ACCATGGAGTTCG
66 ACCATGGAGTTCG
* * * *
119858418 ACCATTAAACCCTGATCCCTTGATCGCATCAGCTAGGAGAGTTGGTGATCATGTTGATAGCGATC
1 ACCATTAAACCATGATCCCTTGATCGCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGATC
119858483 ACCATGGA
66 ACCATGGA
119858491 CTTTGTGTAC
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
78 66 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (78 bp):
ACCATTAAACCATGATCCCTTGATCGCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGATC
ACCATGGAGTTCG
Found at i:119863885 original size:219 final size:217
Alignment explanation
Indices: 119863504--119864150 Score: 934
Period size: 219 Copynumber: 3.0 Consensus size: 217
119863494 TTCAGATTTA
* *
119863504 TGCTTATATTCGTTTTTTTAAATCTTGTGATGCCGTCATTTTTTTGATAGTTTATAGCCTGTTAT
1 TGCTTATATTCGTCTTTTTAAATCTTGTGAT--CGTCATTTTTTTGATAGTTTATCGCCTGTTAT
* *
119863569 GTGTTTTATTT-TTTTTGTCGGTTGTTTTTTTCCCTCTGTAATCTGTATTGAGGGACATTTTCTT
64 GTGTTTTATTTATTTTTTTC-GTTGTTTGTTT-CCTCTGTAAT-TGTATTGAGGGACATTTTCTT
* * *
119863633 GCAAATCTTTGAGTCCTATTTATGAGATTTTATAGCGAAGATATATTTCTAACAACTATATAAGC
126 GGAAATCTTTGAGTCCTATTTATGAGATTTTATAGCGAAGATATGTTTCTAACAACTATATAAGT
*
119863698 ATCTACCCTAAAACCCTTATGAAACAC
191 ATCTACCCTAAAACCCTAATGAAACAC
* *
119863725 TGCTTATAGTCATCTTTTTAAATCTTGTGAT-GTCATTTTTTTGATAGTTTATCGCCTGTTATGT
1 TGCTTATATTCGTCTTTTTAAATCTTGTGATCGTCATTTTTTTGATAGTTTATCGCCTGTTATGT
*
119863789 GTTTTATTTATTTTTTTCAGTTGTTTGTTTGCCTCTGTAATATATATTGAGGGACATTTTCTTGG
66 GTTTTATTTATTTTTTTC-GTTGTTTGTTT-CCTCTGTAAT-TGTATTGAGGGACATTTTCTTGG
* *
119863854 AAATCTTTGAGTCCTATTTATGAGATTTTATAGCGAAGATATGTTTATAATAACTATATAAGTAT
128 AAATCTTTGAGTCCTATTTATGAGATTTTATAGCGAAGATATGTTTCTAACAACTATATAAGTAT
119863919 CTACCCTAAAACCCTAATGAAACAC
193 CTACCCTAAAACCCTAATGAAACAC
*
119863944 TGCTTATATTCGTCTTTTTAAATCTTGTGATGTCGTCATTTTTTTGATAGTTTATCACCTGTTAT
1 TGCTTATATTCGTCTTTTTAAATCTTGTGA--TCGTCATTTTTTTGATAGTTTATCGCCTGTTAT
* * * * *
119864009 CTGTTTTATTTTATTTTTTTCGATTGGTTGCTTCC-C--T--TTGTATTGAGGGACTTTTTCATG
64 GTGTTTTA-TTTATTTTTTTCG-TTGTTTGTTTCCTCTGTAATTGTATTGAGGGACATTTTCTTG
119864069 GAAATCTTT-AGTCCTATTTAT-ATGATTTTATAGCGAAGATATGTTTCTAACAACTATATAAGT
127 GAAATCTTTGAGTCCTATTTATGA-GATTTTATAGCGAAGATATGTTTCTAACAACTATATAAGT
*
119864132 ATCTAACCTAAAACCCTAA
191 ATCTACCCTAAAACCCTAA
119864151 CTGATTAGCA
Statistics
Matches: 391, Mismatches: 28, Indels: 20
0.89 0.06 0.05
Matches are distributed among these distances:
214 1 0.00
215 68 0.17
216 28 0.07
217 1 0.00
218 41 0.10
219 162 0.41
221 30 0.08
222 40 0.10
223 20 0.05
ACGTcount: A:0.25, C:0.14, G:0.14, T:0.47
Consensus pattern (217 bp):
TGCTTATATTCGTCTTTTTAAATCTTGTGATCGTCATTTTTTTGATAGTTTATCGCCTGTTATGT
GTTTTATTTATTTTTTTCGTTGTTTGTTTCCTCTGTAATTGTATTGAGGGACATTTTCTTGGAAA
TCTTTGAGTCCTATTTATGAGATTTTATAGCGAAGATATGTTTCTAACAACTATATAAGTATCTA
CCCTAAAACCCTAATGAAACAC
Found at i:119877149 original size:19 final size:20
Alignment explanation
Indices: 119877107--119877279 Score: 145
Period size: 21 Copynumber: 8.4 Consensus size: 20
119877097 TCCATAATAT
* * *
119877107 CCCGGTTCGATTTTTTTGAA
1 CCCGGTTCGGTTTTTATGAC
*
119877127 CCCGGTTCTGTTTTTATG-C
1 CCCGGTTCGGTTTTTATGAC
*
119877146 CCCGGTTCGGTTTTTTTGGAC
1 CCCGGTTCGGTTTTTAT-GAC
** *
119877167 CCCGGTTCAATTTTCTTAGGA-
1 CCCGGTTC-GGTTT-TTATGAC
*
119877188 CCCGGCTCGGTTTTTATGAC
1 CCCGGTTCGGTTTTTATGAC
*
119877208 CCCGGTTCGAATTTTT-TAGAAC
1 CCCGGTTCG-GTTTTTAT-G-AC
*
119877230 CCCGGTTCGGTTTTTAGGAC
1 CCCGGTTCGGTTTTTATGAC
* *
119877250 TCCGGTTCGGTTTTTTATGAT
1 CCCGGTTCGG-TTTTTATGAC
119877271 CCCGGTTCG
1 CCCGGTTCG
119877280 ATTTAGGGTT
Statistics
Matches: 121, Mismatches: 22, Indels: 19
0.75 0.14 0.12
Matches are distributed among these distances:
19 20 0.17
20 39 0.32
21 44 0.36
22 16 0.13
23 2 0.02
ACGTcount: A:0.12, C:0.24, G:0.24, T:0.40
Consensus pattern (20 bp):
CCCGGTTCGGTTTTTATGAC
Found at i:119877161 original size:21 final size:21
Alignment explanation
Indices: 119877107--119877279 Score: 151
Period size: 20 Copynumber: 8.4 Consensus size: 21
119877097 TCCATAATAT
* * *
119877107 CCCGGTTCGATTTTTT-TGAA
1 CCCGGTTCGGTTTTTTAGGAC
* *
119877127 CCCGGTTCTG-TTTTTATG-C
1 CCCGGTTCGGTTTTTTAGGAC
*
119877146 CCCGGTTCGGTTTTTTTGGAC
1 CCCGGTTCGGTTTTTTAGGAC
**
119877167 CCCGGTTCAATTTTCTTAGGA-
1 CCCGGTTCGGTTTT-TTAGGAC
* *
119877188 CCCGGCTCGG-TTTTTATGAC
1 CCCGGTTCGGTTTTTTAGGAC
* *
119877208 CCCGGTTCGAATTTTTTAGAAC
1 CCCGGTTCG-GTTTTTTAGGAC
119877230 CCCGGTTCGG-TTTTTAGGAC
1 CCCGGTTCGGTTTTTTAGGAC
* * *
119877250 TCCGGTTCGGTTTTTTATGAT
1 CCCGGTTCGGTTTTTTAGGAC
119877271 CCCGGTTCG
1 CCCGGTTCG
119877280 ATTTAGGGTT
Statistics
Matches: 122, Mismatches: 23, Indels: 15
0.76 0.14 0.09
Matches are distributed among these distances:
19 19 0.16
20 45 0.37
21 36 0.30
22 22 0.18
ACGTcount: A:0.12, C:0.24, G:0.24, T:0.40
Consensus pattern (21 bp):
CCCGGTTCGGTTTTTTAGGAC
Found at i:119877296 original size:7 final size:7
Alignment explanation
Indices: 119877281--119882356 Score: 8881
Period size: 7 Copynumber: 727.7 Consensus size: 7
119877271 CCCGGTTCGA
119877281 TTTAGGG
1 TTTAGGG
*
119877288 TTTATGG
1 TTTAGGG
*
119877295 TTTGGGG
1 TTTAGGG
119877302 TTTAGGG
1 TTTAGGG
*
119877309 TTTTAGAGT
1 -TTTAG-GG
119877318 TTTAGGG
1 TTTAGGG
119877325 TTTAGGG
1 TTTAGGG
119877332 TTTTAGGG
1 -TTTAGGG
119877340 TTTAGGG
1 TTTAGGG
*
119877347 TTTATGG
1 TTTAGGG
119877354 TTTAGGG
1 TTTAGGG
119877361 TTTAGGG
1 TTTAGGG
119877368 TTTAGGG
1 TTTAGGG
119877375 TTTAGGG
1 TTTAGGG
*
119877382 TTCAGGG
1 TTTAGGG
*
119877389 TTCAGGG
1 TTTAGGG
*
119877396 TTCAGGG
1 TTTAGGG
*
119877403 TTCAGGG
1 TTTAGGG
*
119877410 TTCAGGG
1 TTTAGGG
*
119877417 TTCAGGGG
1 TTTA-GGG
*
119877425 TTTGGGG
1 TTTAGGG
*
119877432 TTTGGGG
1 TTTAGGG
*
119877439 TTTGGGG
1 TTTAGGG
*
119877446 TTTGGGG
1 TTTAGGG
*
119877453 TGTAGGG
1 TTTAGGG
119877460 TTTTAGGG
1 -TTTAGGG
*
119877468 TTTGGGG
1 TTTAGGG
*
119877475 TGTAGGG
1 TTTAGGG
119877482 TTTTAGGG
1 -TTTAGGG
119877490 TTTAGGG
1 TTTAGGG
*
119877497 TTTGGGG
1 TTTAGGG
*
119877504 TGTAGGG
1 TTTAGGG
119877511 TTTTAGGG
1 -TTTAGGG
119877519 TTTAGGG
1 TTTAGGG
*
119877526 TTTGGGG
1 TTTAGGG
*
119877533 TGTAGGG
1 TTTAGGG
*
119877540 TTTGGGG
1 TTTAGGG
*
119877547 TTTGGGG
1 TTTAGGG
*
119877554 TGTAGGG
1 TTTAGGG
*
119877561 TTTGGGG
1 TTTAGGG
119877568 TTTAGGG
1 TTTAGGG
*
119877575 TTTGGGG
1 TTTAGGG
*
119877582 TTTGGGG
1 TTTAGGG
119877589 TTTAGGG
1 TTTAGGG
119877596 TTTAGGG
1 TTTAGGG
*
119877603 TTTGGGG
1 TTTAGGG
119877610 TTT-GGG
1 TTTAGGG
119877616 TTTAGGG
1 TTTAGGG
119877623 TTTAGGG
1 TTTAGGG
119877630 TTTTAGGG
1 -TTTAGGG
119877638 TTTTAGGG
1 -TTTAGGG
119877646 TTTAGGG
1 TTTAGGG
119877653 TTTAGGG
1 TTTAGGG
119877660 TTTAGGG
1 TTTAGGG
119877667 TTTTAGGG
1 -TTTAGGG
119877675 TTTAGGG
1 TTTAGGG
119877682 TTTAGGG
1 TTTAGGG
119877689 TTTAGGG
1 TTTAGGG
119877696 TTTTAGGG
1 -TTTAGGG
119877704 TTTGAGGG
1 TTT-AGGG
119877712 TTTAGGG
1 TTTAGGG
119877719 TTTAGGG
1 TTTAGGG
119877726 TTTAGGG
1 TTTAGGG
119877733 TTTAGGG
1 TTTAGGG
119877740 TTTTAGGG
1 -TTTAGGG
119877748 TTTAGGG
1 TTTAGGG
119877755 TTTAGGG
1 TTTAGGG
119877762 TTTAGGG
1 TTTAGGG
119877769 TTTAGGG
1 TTTAGGG
119877776 TTTTAGGG
1 -TTTAGGG
119877784 TTTAGGG
1 TTTAGGG
119877791 TTTAGGG
1 TTTAGGG
119877798 TTTAGGG
1 TTTAGGG
119877805 TTTAGGG
1 TTTAGGG
119877812 TTTAGGG
1 TTTAGGG
119877819 TTTAGGG
1 TTTAGGG
119877826 TTTAGGG
1 TTTAGGG
119877833 TTTTTAGGG
1 --TTTAGGG
119877842 TTTAGGG
1 TTTAGGG
119877849 TTTTTAGGG
1 --TTTAGGG
119877858 TTTAGGG
1 TTTAGGG
119877865 TTTAGGG
1 TTTAGGG
119877872 TTTAGGG
1 TTTAGGG
119877879 TTTAGGG
1 TTTAGGG
119877886 TTTAGGG
1 TTTAGGG
119877893 TTTAGGG
1 TTTAGGG
119877900 TTTAGGG
1 TTTAGGG
119877907 TTTAGGG
1 TTTAGGG
119877914 TTTAGGG
1 TTTAGGG
119877921 TTTAGGG
1 TTTAGGG
119877928 TTTAGGG
1 TTTAGGG
119877935 -TTAGGG
1 TTTAGGG
119877941 TTTAGGG
1 TTTAGGG
119877948 TTTAGGG
1 TTTAGGG
119877955 TTTAGGG
1 TTTAGGG
119877962 TTTAGGG
1 TTTAGGG
119877969 TTTAGGG
1 TTTAGGG
119877976 TTTAGGG
1 TTTAGGG
119877983 TTTAGGG
1 TTTAGGG
119877990 TTTAGGG
1 TTTAGGG
119877997 TTTAGGG
1 TTTAGGG
119878004 TTTAGGG
1 TTTAGGG
119878011 TTTAGGG
1 TTTAGGG
119878018 TTTAGGG
1 TTTAGGG
119878025 TTTAGGG
1 TTTAGGG
119878032 TTTAGGG
1 TTTAGGG
119878039 TTTAGGG
1 TTTAGGG
119878046 TTTAGGG
1 TTTAGGG
119878053 TTTAGGG
1 TTTAGGG
119878060 TTTAGGG
1 TTTAGGG
119878067 TTTAGGG
1 TTTAGGG
119878074 TTTAGGG
1 TTTAGGG
119878081 TTTAGGG
1 TTTAGGG
119878088 TTTAGGG
1 TTTAGGG
119878095 TTTAGGG
1 TTTAGGG
119878102 TTTAGGG
1 TTTAGGG
119878109 TTTAGGG
1 TTTAGGG
119878116 TTTAGGG
1 TTTAGGG
119878123 TTTAGGG
1 TTTAGGG
119878130 TTTTAGGG
1 -TTTAGGG
119878138 TTTAGGG
1 TTTAGGG
119878145 TTTAGGG
1 TTTAGGG
119878152 TTTAGGG
1 TTTAGGG
119878159 TTTAGGG
1 TTTAGGG
119878166 TTTA-GG
1 TTTAGGG
119878172 TTTAGGG
1 TTTAGGG
119878179 TTTAGGG
1 TTTAGGG
119878186 TTTAGGG
1 TTTAGGG
119878193 -TTAGGG
1 TTTAGGG
119878199 TTTA-GG
1 TTTAGGG
119878205 --TAGGG
1 TTTAGGG
119878210 TTTAGGG
1 TTTAGGG
119878217 --TAGGG
1 TTTAGGG
119878222 TTTAGGG
1 TTTAGGG
119878229 TTTAGGG
1 TTTAGGG
119878236 TTTAGGG
1 TTTAGGG
119878243 TTTAGGG
1 TTTAGGG
119878250 TTTAGGG
1 TTTAGGG
119878257 TTTAGGG
1 TTTAGGG
119878264 TTTAGGG
1 TTTAGGG
119878271 TTTAGGG
1 TTTAGGG
119878278 TTTAGGG
1 TTTAGGG
119878285 TTTAGGG
1 TTTAGGG
119878292 TTTAGGG
1 TTTAGGG
119878299 TTTAGGG
1 TTTAGGG
119878306 TTTAGGG
1 TTTAGGG
119878313 TTTAGGG
1 TTTAGGG
119878320 TTTAGGG
1 TTTAGGG
119878327 TTTAGGG
1 TTTAGGG
119878334 TTTAGGG
1 TTTAGGG
119878341 -TTAGGG
1 TTTAGGG
119878347 TTTAGGG
1 TTTAGGG
119878354 -TTAGGG
1 TTTAGGG
119878360 TTTAGGG
1 TTTAGGG
119878367 TTTAGGG
1 TTTAGGG
119878374 TTTAGGG
1 TTTAGGG
119878381 TTTAGGG
1 TTTAGGG
119878388 TTTTAGGG
1 -TTTAGGG
119878396 TTTTAGGG
1 -TTTAGGG
119878404 TTTAGGG
1 TTTAGGG
119878411 TTTAGGG
1 TTTAGGG
119878418 TTTAGGG
1 TTTAGGG
119878425 TTTAGGG
1 TTTAGGG
119878432 -TTAGGG
1 TTTAGGG
119878438 TTTAGGG
1 TTTAGGG
119878445 TTTAGGG
1 TTTAGGG
119878452 TTTAGGG
1 TTTAGGG
119878459 TTTAGGG
1 TTTAGGG
119878466 TTTAGGG
1 TTTAGGG
119878473 TTTAGGG
1 TTTAGGG
119878480 TTTAGGG
1 TTTAGGG
119878487 TTTAGGG
1 TTTAGGG
119878494 TTTAGGG
1 TTTAGGG
119878501 -TTAGGG
1 TTTAGGG
119878507 TTTAGGG
1 TTTAGGG
119878514 TTTAGGG
1 TTTAGGG
119878521 TTTA-GG
1 TTTAGGG
119878527 TTTAGGG
1 TTTAGGG
119878534 TTTAGGG
1 TTTAGGG
119878541 TTTAGGG
1 TTTAGGG
119878548 TTTAGGG
1 TTTAGGG
119878555 TTTAGGG
1 TTTAGGG
119878562 TTTAGGG
1 TTTAGGG
119878569 TTTAGGG
1 TTTAGGG
119878576 TTTAGGG
1 TTTAGGG
119878583 TTTA-GG
1 TTTAGGG
119878589 TTT--GG
1 TTTAGGG
119878594 TTTAGGG
1 TTTAGGG
119878601 -TTAGGG
1 TTTAGGG
119878607 TTTAGGG
1 TTTAGGG
119878614 TTTAGGG
1 TTTAGGG
119878621 TTTAGGG
1 TTTAGGG
119878628 TTTAGGG
1 TTTAGGG
119878635 TTTAGGG
1 TTTAGGG
119878642 -TTAGGG
1 TTTAGGG
119878648 TTTAGGG
1 TTTAGGG
119878655 TTTAGGG
1 TTTAGGG
119878662 TTTAGGG
1 TTTAGGG
119878669 TTTAGGG
1 TTTAGGG
119878676 TTTAGGG
1 TTTAGGG
119878683 TTTAGGG
1 TTTAGGG
119878690 TTTAGGG
1 TTTAGGG
119878697 TTTAGGG
1 TTTAGGG
119878704 TTTAGGG
1 TTTAGGG
119878711 TTTAGGG
1 TTTAGGG
119878718 TTTA-GG
1 TTTAGGG
119878724 TTTAGGG
1 TTTAGGG
119878731 TTTAGGG
1 TTTAGGG
119878738 TTTAGGG
1 TTTAGGG
119878745 -TTA-GG
1 TTTAGGG
119878750 TTTAGGG
1 TTTAGGG
119878757 TTTAGGG
1 TTTAGGG
119878764 TTTAGGG
1 TTTAGGG
119878771 TTTAGGG
1 TTTAGGG
119878778 TTTAGGG
1 TTTAGGG
119878785 TTTAGGG
1 TTTAGGG
119878792 TTTAGGG
1 TTTAGGG
119878799 TTTA-GG
1 TTTAGGG
119878805 TTTAGGG
1 TTTAGGG
119878812 TTTAGGG
1 TTTAGGG
119878819 TTTAGGG
1 TTTAGGG
119878826 TTTAGGG
1 TTTAGGG
119878833 TTTAGGG
1 TTTAGGG
119878840 TTTAGGG
1 TTTAGGG
119878847 TTTAGGG
1 TTTAGGG
119878854 TTTAGGG
1 TTTAGGG
119878861 TTTAGGG
1 TTTAGGG
119878868 TTTAGGG
1 TTTAGGG
119878875 TTTA-GG
1 TTTAGGG
119878881 TTTAGGG
1 TTTAGGG
119878888 TTTAGGG
1 TTTAGGG
119878895 TTTAGGG
1 TTTAGGG
119878902 TTTAGGG
1 TTTAGGG
119878909 TTTA-GG
1 TTTAGGG
119878915 TTTAGGG
1 TTTAGGG
119878922 TTTAGGG
1 TTTAGGG
119878929 TTTAGGG
1 TTTAGGG
119878936 TTTAGGG
1 TTTAGGG
119878943 TTTAGGG
1 TTTAGGG
119878950 TTTAGGG
1 TTTAGGG
119878957 TTTAGGG
1 TTTAGGG
119878964 TTTAGGG
1 TTTAGGG
119878971 TTTAGGG
1 TTTAGGG
119878978 TTTAGGG
1 TTTAGGG
119878985 TTTAGGG
1 TTTAGGG
119878992 -TTAGGG
1 TTTAGGG
119878998 TTTAGGG
1 TTTAGGG
119879005 TTTAGGG
1 TTTAGGG
119879012 TTTAGGG
1 TTTAGGG
119879019 TTTAGGG
1 TTTAGGG
119879026 TTTAGGG
1 TTTAGGG
119879033 TTTAGGG
1 TTTAGGG
119879040 -TTAGGG
1 TTTAGGG
119879046 TTTAGGG
1 TTTAGGG
119879053 TTTAGGG
1 TTTAGGG
119879060 TTTAGGG
1 TTTAGGG
119879067 TTTAGGG
1 TTTAGGG
119879074 -TTAGGG
1 TTTAGGG
119879080 TTTAGGG
1 TTTAGGG
119879087 TTTAGGG
1 TTTAGGG
119879094 TTTAGGG
1 TTTAGGG
119879101 TTTAGGG
1 TTTAGGG
119879108 TTTAGGG
1 TTTAGGG
119879115 TTTAGGG
1 TTTAGGG
119879122 TTTAGGG
1 TTTAGGG
119879129 TTTAGGG
1 TTTAGGG
119879136 TTTAGGG
1 TTTAGGG
119879143 TTTAGGG
1 TTTAGGG
119879150 TTTAGGG
1 TTTAGGG
119879157 TTTAGGG
1 TTTAGGG
119879164 TTTAGGG
1 TTTAGGG
119879171 TTTAGGG
1 TTTAGGG
119879178 TTTAGGG
1 TTTAGGG
119879185 TTTAGGG
1 TTTAGGG
119879192 TTTAGGG
1 TTTAGGG
119879199 TTTAGGG
1 TTTAGGG
119879206 TTTAGGG
1 TTTAGGG
119879213 TTTAGGG
1 TTTAGGG
119879220 TTTAGGG
1 TTTAGGG
119879227 TTTAGGTTAG
1 TTTAGG---G
119879237 TTT-GGG
1 TTTAGGG
119879243 TTTAGGG
1 TTTAGGG
119879250 TTTAGGG
1 TTTAGGG
119879257 TTTAGGG
1 TTTAGGG
119879264 TTTAGGG
1 TTTAGGG
119879271 TTTAGGG
1 TTTAGGG
119879278 TTTAGGG
1 TTTAGGG
119879285 TTTAGGG
1 TTTAGGG
119879292 -TTA-GG
1 TTTAGGG
119879297 TTTAGGG
1 TTTAGGG
119879304 TTTAGGG
1 TTTAGGG
119879311 TTTAGGG
1 TTTAGGG
119879318 TTTAGGG
1 TTTAGGG
119879325 TTTAGGG
1 TTTAGGG
119879332 TTTAGGG
1 TTTAGGG
119879339 TTTAGGG
1 TTTAGGG
119879346 TTTAGGG
1 TTTAGGG
119879353 -TTAGGG
1 TTTAGGG
119879359 TTTAGGG
1 TTTAGGG
119879366 TTTAGGG
1 TTTAGGG
119879373 TTTAGGG
1 TTTAGGG
119879380 TTTAGGG
1 TTTAGGG
119879387 TTTA-GG
1 TTTAGGG
119879393 TTTAGGG
1 TTTAGGG
119879400 TTTAGGG
1 TTTAGGG
119879407 TTTAGGG
1 TTTAGGG
119879414 TTTAGGG
1 TTTAGGG
119879421 TTTAGGG
1 TTTAGGG
119879428 TTTAGGG
1 TTTAGGG
119879435 TTTA-GG
1 TTTAGGG
119879441 TTTAGGG
1 TTTAGGG
119879448 TTTAGGG
1 TTTAGGG
119879455 TTTAGGG
1 TTTAGGG
119879462 TTTA-GG
1 TTTAGGG
119879468 -TTA-GG
1 TTTAGGG
119879473 TTTAGGG
1 TTTAGGG
119879480 TTTAGGG
1 TTTAGGG
119879487 TTTAGGG
1 TTTAGGG
119879494 TTTAGGG
1 TTTAGGG
119879501 TTTAGGG
1 TTTAGGG
119879508 TTTAGGG
1 TTTAGGG
119879515 TTTAGGG
1 TTTAGGG
119879522 TTTAGGG
1 TTTAGGG
119879529 TTTA-GG
1 TTTAGGG
119879535 -TTAGGG
1 TTTAGGG
119879541 TTTAGGG
1 TTTAGGG
119879548 TTTAGGG
1 TTTAGGG
119879555 -TTAGGG
1 TTTAGGG
119879561 TTTAGGG
1 TTTAGGG
119879568 TTTAGGG
1 TTTAGGG
119879575 TTTAGGG
1 TTTAGGG
119879582 TTTAGGG
1 TTTAGGG
119879589 TTTAGGG
1 TTTAGGG
119879596 TTTAGGG
1 TTTAGGG
119879603 TTTAGGG
1 TTTAGGG
119879610 TTTAGGG
1 TTTAGGG
119879617 TTTAGGG
1 TTTAGGG
119879624 TTTAGGG
1 TTTAGGG
119879631 TTTAGGG
1 TTTAGGG
119879638 TTTAGGG
1 TTTAGGG
119879645 TTTAGGG
1 TTTAGGG
119879652 TTTAGGG
1 TTTAGGG
119879659 TTTAGGG
1 TTTAGGG
119879666 TTTAGGG
1 TTTAGGG
119879673 TTTAGGG
1 TTTAGGG
119879680 TTTA-GG
1 TTTAGGG
119879686 TTTAGGG
1 TTTAGGG
119879693 TTTAGGG
1 TTTAGGG
119879700 TTTAGGG
1 TTTAGGG
119879707 TTTAGGG
1 TTTAGGG
119879714 TTTAGGG
1 TTTAGGG
119879721 TTTAGGG
1 TTTAGGG
119879728 TTTAGGG
1 TTTAGGG
119879735 TTTAGGG
1 TTTAGGG
119879742 TTTAGGG
1 TTTAGGG
119879749 TTTAGGG
1 TTTAGGG
119879756 TTTAGGG
1 TTTAGGG
119879763 TTTAGGG
1 TTTAGGG
119879770 TTTAGGG
1 TTTAGGG
119879777 TTTA-GG
1 TTTAGGG
119879783 -TTAGGG
1 TTTAGGG
119879789 TTTAGGG
1 TTTAGGG
119879796 TTTAGGG
1 TTTAGGG
119879803 TTTAGGG
1 TTTAGGG
119879810 TTTAGGG
1 TTTAGGG
119879817 TTTAGGG
1 TTTAGGG
119879824 TTTAGGG
1 TTTAGGG
119879831 TTTAGGG
1 TTTAGGG
*
119879838 TTTTGGGGG
1 -TTT-AGGG
119879847 TTTAGGG
1 TTTAGGG
119879854 TTTAGGG
1 TTTAGGG
119879861 TTTAGGG
1 TTTAGGG
119879868 TTTTAGGG
1 -TTTAGGG
119879876 TTTAGGG
1 TTTAGGG
119879883 TTTAGGG
1 TTTAGGG
119879890 TTTAGGG
1 TTTAGGG
119879897 TTTAGGG
1 TTTAGGG
119879904 TTTAGGG
1 TTTAGGG
119879911 TTTAGGG
1 TTTAGGG
119879918 TTTA-GG
1 TTTAGGG
119879924 TTTAGGG
1 TTTAGGG
119879931 TTTAGGG
1 TTTAGGG
119879938 TTTAGGG
1 TTTAGGG
119879945 TTTAGGG
1 TTTAGGG
119879952 TTTAGGG
1 TTTAGGG
119879959 TTTAGGG
1 TTTAGGG
119879966 TTTAGGG
1 TTTAGGG
119879973 TTTAGGG
1 TTTAGGG
119879980 TTTAGGG
1 TTTAGGG
119879987 TTTAGGG
1 TTTAGGG
119879994 TTTAGGG
1 TTTAGGG
119880001 TTTAGGG
1 TTTAGGG
119880008 TTTAGGG
1 TTTAGGG
119880015 TTTTAGGG
1 -TTTAGGG
119880023 TTTAGGG
1 TTTAGGG
119880030 TTTAGGG
1 TTTAGGG
119880037 TTTAGGG
1 TTTAGGG
119880044 TTTAGGG
1 TTTAGGG
119880051 TTTAGGG
1 TTTAGGG
119880058 TTTAGGG
1 TTTAGGG
119880065 TTTAGGG
1 TTTAGGG
119880072 TTTAGGG
1 TTTAGGG
119880079 TTTAGGG
1 TTTAGGG
119880086 TTTAGGG
1 TTTAGGG
119880093 TTTAGGG
1 TTTAGGG
119880100 TTTAGGG
1 TTTAGGG
119880107 TTTAGGG
1 TTTAGGG
119880114 TTTAGGG
1 TTTAGGG
119880121 TTTAGGG
1 TTTAGGG
119880128 TTTAGGG
1 TTTAGGG
119880135 TTTAGGG
1 TTTAGGG
119880142 TTTAGGG
1 TTTAGGG
119880149 TTTAGGG
1 TTTAGGG
119880156 TTTAGGG
1 TTTAGGG
119880163 TTTAGGG
1 TTTAGGG
119880170 TTTAGGG
1 TTTAGGG
119880177 TTTAGGG
1 TTTAGGG
119880184 TTTAGGG
1 TTTAGGG
119880191 TTTAGGG
1 TTTAGGG
119880198 TTTAGGG
1 TTTAGGG
119880205 -TTAGGG
1 TTTAGGG
119880211 TTTAGGG
1 TTTAGGG
119880218 TTTAGGG
1 TTTAGGG
119880225 TTTAGGG
1 TTTAGGG
119880232 TTTAGGG
1 TTTAGGG
119880239 TTTTAGGG
1 -TTTAGGG
119880247 TTTAGGG
1 TTTAGGG
119880254 TTTAGGG
1 TTTAGGG
119880261 TTTAGGG
1 TTTAGGG
119880268 TTTAGGGG
1 TTTA-GGG
*
119880276 GTTAGGG
1 TTTAGGG
119880283 TTTAGGG
1 TTTAGGG
119880290 TTTAGGG
1 TTTAGGG
119880297 -TTA-GG
1 TTTAGGG
119880302 TTTAGGG
1 TTTAGGG
119880309 TTTAGGG
1 TTTAGGG
119880316 TTTAGGG
1 TTTAGGG
119880323 TTTAGGG
1 TTTAGGG
119880330 TTTAGGG
1 TTTAGGG
119880337 TTTAGGG
1 TTTAGGG
119880344 TTTAGGG
1 TTTAGGG
119880351 TTTAGGG
1 TTTAGGG
119880358 TTTAGGG
1 TTTAGGG
119880365 TTTAGGG
1 TTTAGGG
*
119880372 TTTAGGT
1 TTTAGGG
119880379 TTTAGGG
1 TTTAGGG
119880386 TTTAGGG
1 TTTAGGG
119880393 TTTAGGG
1 TTTAGGG
119880400 TTTAGGG
1 TTTAGGG
119880407 TTTAGGG
1 TTTAGGG
119880414 TTTAGGG
1 TTTAGGG
119880421 TTTAGGG
1 TTTAGGG
119880428 TTTAGGG
1 TTTAGGG
119880435 TTTA-GG
1 TTTAGGG
119880441 TTTAGGG
1 TTTAGGG
119880448 TTTAGGG
1 TTTAGGG
119880455 TTTAGGG
1 TTTAGGG
119880462 TTTTAGGG
1 -TTTAGGG
119880470 TTTAGGG
1 TTTAGGG
119880477 TTTAGGG
1 TTTAGGG
119880484 TTTAGGG
1 TTTAGGG
119880491 TTTAGGG
1 TTTAGGG
119880498 TTTAGGG
1 TTTAGGG
119880505 TTTA-GG
1 TTTAGGG
119880511 TTTAGGG
1 TTTAGGG
119880518 TTTAGGG
1 TTTAGGG
119880525 TTTAGGG
1 TTTAGGG
119880532 TTTAGGG
1 TTTAGGG
119880539 TTTAGGG
1 TTTAGGG
119880546 TTTAGGG
1 TTTAGGG
119880553 TTTAGGG
1 TTTAGGG
119880560 TTTAGGG
1 TTTAGGG
119880567 TTTAGGG
1 TTTAGGG
119880574 TTTAGGG
1 TTTAGGG
119880581 TTTTTAGGG
1 --TTTAGGG
119880590 TTTAGGG
1 TTTAGGG
119880597 TTTAGGG
1 TTTAGGG
119880604 TTTTTAGGG
1 --TTTAGGG
119880613 TTTAGGG
1 TTTAGGG
119880620 TTTAGGG
1 TTTAGGG
119880627 TTTAGGG
1 TTTAGGG
119880634 TTTAGGG
1 TTTAGGG
119880641 TTTAGGG
1 TTTAGGG
119880648 TTTAGGG
1 TTTAGGG
119880655 TTTAGGG
1 TTTAGGG
119880662 TTTAGGG
1 TTTAGGG
119880669 TTTAGGG
1 TTTAGGG
119880676 TTTAGGG
1 TTTAGGG
119880683 -TTAGGG
1 TTTAGGG
119880689 -TTAGGG
1 TTTAGGG
119880695 TTTAGGG
1 TTTAGGG
119880702 TTTAGGG
1 TTTAGGG
119880709 TTTAGGG
1 TTTAGGG
119880716 TTTAGGG
1 TTTAGGG
119880723 TTTAGGG
1 TTTAGGG
119880730 TTTAGGG
1 TTTAGGG
119880737 TTTAGGG
1 TTTAGGG
119880744 TTTAGGG
1 TTTAGGG
119880751 TTTAGGG
1 TTTAGGG
119880758 TTTAGGGG
1 TTTA-GGG
119880766 TTT-GGG
1 TTTAGGG
*
119880772 GTTAGGG
1 TTTAGGG
119880779 TTTAGGG
1 TTTAGGG
119880786 TTTAGGG
1 TTTAGGG
119880793 TTTAGGG
1 TTTAGGG
119880800 TTTAGGG
1 TTTAGGG
119880807 TTTAGGG
1 TTTAGGG
119880814 TTTAGGG
1 TTTAGGG
119880821 TTTAGGG
1 TTTAGGG
119880828 TTTAGGG
1 TTTAGGG
119880835 TTTAGGG
1 TTTAGGG
119880842 TTTAGGG
1 TTTAGGG
119880849 TTTAGGG
1 TTTAGGG
119880856 TTTAGGG
1 TTTAGGG
119880863 TTTAGGG
1 TTTAGGG
119880870 TTTAGGG
1 TTTAGGG
119880877 TTTAGGG
1 TTTAGGG
119880884 TTTAGGG
1 TTTAGGG
119880891 TTTAGGG
1 TTTAGGG
119880898 TTTAGGG
1 TTTAGGG
119880905 TTTAGGG
1 TTTAGGG
119880912 TTTAGGG
1 TTTAGGG
119880919 TTTAGGG
1 TTTAGGG
119880926 TTTAGGG
1 TTTAGGG
119880933 TTTAGGG
1 TTTAGGG
119880940 TTTAGGG
1 TTTAGGG
119880947 TTTAGGG
1 TTTAGGG
119880954 TTTAGGG
1 TTTAGGG
119880961 TTTAGGG
1 TTTAGGG
119880968 TTTAGGG
1 TTTAGGG
119880975 TTTAGGG
1 TTTAGGG
119880982 TTTAGGG
1 TTTAGGG
119880989 TTTAGGG
1 TTTAGGG
119880996 TTTAGGG
1 TTTAGGG
119881003 TTTAGGG
1 TTTAGGG
119881010 TTTAGGG
1 TTTAGGG
119881017 TTTAGGG
1 TTTAGGG
119881024 TTTAGGG
1 TTTAGGG
119881031 TTTAGGG
1 TTTAGGG
119881038 TTTAGGG
1 TTTAGGG
119881045 TTTAGGG
1 TTTAGGG
119881052 TTTAGGG
1 TTTAGGG
119881059 TTTAGGG
1 TTTAGGG
119881066 TTTAGGG
1 TTTAGGG
119881073 TTTAGGG
1 TTTAGGG
119881080 TTTAGGG
1 TTTAGGG
119881087 TTTAGGG
1 TTTAGGG
119881094 TTTAGGG
1 TTTAGGG
119881101 TTTTA-GG
1 -TTTAGGG
119881108 TTTAGGG
1 TTTAGGG
119881115 TTTTAGGG
1 -TTTAGGG
119881123 TTTAGGG
1 TTTAGGG
119881130 TTTAGGG
1 TTTAGGG
119881137 TTTAGGG
1 TTTAGGG
119881144 TTTAGGG
1 TTTAGGG
119881151 TTTTAGGG
1 -TTTAGGG
119881159 TTTAGGG
1 TTTAGGG
119881166 TTTAGGG
1 TTTAGGG
119881173 TTTAGGG
1 TTTAGGG
119881180 TTTAGGG
1 TTTAGGG
119881187 TTTAGGG
1 TTTAGGG
119881194 TTTAGGG
1 TTTAGGG
119881201 TTTAGGG
1 TTTAGGG
119881208 TTTTAGGG
1 -TTTAGGG
119881216 TTTA-GG
1 TTTAGGG
119881222 TTTAGGG
1 TTTAGGG
119881229 TTTAGGG
1 TTTAGGG
119881236 TTTAGGG
1 TTTAGGG
119881243 TTTAGGG
1 TTTAGGG
119881250 TTTAGGG
1 TTTAGGG
119881257 TTTAGGG
1 TTTAGGG
119881264 -TT-GGG
1 TTTAGGG
119881269 TTTAGGG
1 TTTAGGG
119881276 TTTAGGG
1 TTTAGGG
119881283 TTTTAGGG
1 -TTTAGGG
119881291 TTTAGGG
1 TTTAGGG
119881298 TTTAGGG
1 TTTAGGG
119881305 TTTAGGG
1 TTTAGGG
119881312 TTTAGGG
1 TTTAGGG
119881319 TTTAGGG
1 TTTAGGG
119881326 TTTAGGG
1 TTTAGGG
119881333 TTTAGGG
1 TTTAGGG
119881340 TTTAGGG
1 TTTAGGG
119881347 TTTAGGG
1 TTTAGGG
119881354 TTTAGGG
1 TTTAGGG
119881361 TTTAGGG
1 TTTAGGG
119881368 TTTAGGG
1 TTTAGGG
119881375 TTTAGGG
1 TTTAGGG
119881382 TTTAGGG
1 TTTAGGG
119881389 TTT--GG
1 TTTAGGG
119881394 TTTAGGG
1 TTTAGGG
119881401 TTTTAGGG
1 -TTTAGGG
119881409 TTTAGGG
1 TTTAGGG
119881416 TTTAGGG
1 TTTAGGG
119881423 TTTAGGG
1 TTTAGGG
119881430 TTTAGGG
1 TTTAGGG
119881437 -TTAGGG
1 TTTAGGG
119881443 TTTAGGG
1 TTTAGGG
119881450 TTTAGGG
1 TTTAGGG
119881457 TTTAGGG
1 TTTAGGG
119881464 TTTAGGG
1 TTTAGGG
119881471 TTTAGGG
1 TTTAGGG
119881478 TTTAGGG
1 TTTAGGG
119881485 TTTAGGG
1 TTTAGGG
119881492 TTTAGGG
1 TTTAGGG
119881499 TTTAGGG
1 TTTAGGG
119881506 TTTAGGG
1 TTTAGGG
119881513 TTTAGGG
1 TTTAGGG
119881520 TTTAGGG
1 TTTAGGG
119881527 TTTAGGG
1 TTTAGGG
119881534 TTTAGGG
1 TTTAGGG
119881541 TTTTTTAGGG
1 ---TTTAGGG
119881551 TTTAGGG
1 TTTAGGG
119881558 TTTAGGG
1 TTTAGGG
119881565 TTTAGGG
1 TTTAGGG
119881572 TTTAGGG
1 TTTAGGG
119881579 TTTAGGG
1 TTTAGGG
119881586 TTTAGGG
1 TTTAGGG
119881593 TTTAGGG
1 TTTAGGG
119881600 TTTAGGG
1 TTTAGGG
119881607 TTTAGGG
1 TTTAGGG
119881614 TTTAGGG
1 TTTAGGG
119881621 TTTAGGG
1 TTTAGGG
119881628 TTTAGGG
1 TTTAGGG
119881635 TTTAGGG
1 TTTAGGG
119881642 TTTAGGG
1 TTTAGGG
119881649 TTTAGGG
1 TTTAGGG
119881656 TTTAGGG
1 TTTAGGG
119881663 TTTAGGG
1 TTTAGGG
119881670 TTTAGGG
1 TTTAGGG
119881677 TTTAGGG
1 TTTAGGG
119881684 TTTAGGG
1 TTTAGGG
119881691 TTTAGGG
1 TTTAGGG
119881698 TTTAGGGG
1 TTTA-GGG
119881706 TTT-GGG
1 TTTAGGG
119881712 TTTTAGGG
1 -TTTAGGG
119881720 TTTAGGG
1 TTTAGGG
119881727 TTTAGGG
1 TTTAGGG
119881734 TTTAGGG
1 TTTAGGG
119881741 TTTAGGG
1 TTTAGGG
119881748 TTTAGGG
1 TTTAGGG
119881755 TTTAGGG
1 TTTAGGG
119881762 TTTAGGG
1 TTTAGGG
119881769 TTTAGGG
1 TTTAGGG
119881776 TTTAGGG
1 TTTAGGG
119881783 TTTAGGG
1 TTTAGGG
119881790 TTTAGGG
1 TTTAGGG
119881797 TTTAGGG
1 TTTAGGG
119881804 TTTAGGG
1 TTTAGGG
119881811 TTTAGGG
1 TTTAGGG
119881818 TTTAGGG
1 TTTAGGG
119881825 TTTAGGG
1 TTTAGGG
119881832 TTTAGGG
1 TTTAGGG
119881839 TTTAGGG
1 TTTAGGG
119881846 TTTAGGG
1 TTTAGGG
119881853 TTTAGGG
1 TTTAGGG
119881860 TTTA-GG
1 TTTAGGG
119881866 TTTAGGG
1 TTTAGGG
119881873 -TTAGGG
1 TTTAGGG
119881879 TTTAGGG
1 TTTAGGG
119881886 TTTAGGG
1 TTTAGGG
119881893 TTTAGGG
1 TTTAGGG
119881900 TTTAGGG
1 TTTAGGG
119881907 TTTAGGG
1 TTTAGGG
119881914 TTTAGGG
1 TTTAGGG
119881921 TTTAGGG
1 TTTAGGG
119881928 TTTAGGG
1 TTTAGGG
119881935 TTTAGGG
1 TTTAGGG
119881942 TTTTAGGG
1 -TTTAGGG
119881950 TTTAGGG
1 TTTAGGG
119881957 TTTAGGG
1 TTTAGGG
119881964 TTTAGGG
1 TTTAGGG
119881971 TTTAGGG
1 TTTAGGG
119881978 TTTAGGG
1 TTTAGGG
119881985 TTTAGGG
1 TTTAGGG
119881992 TTTTAGGG
1 -TTTAGGG
119882000 TTTAGGG
1 TTTAGGG
119882007 TTTAGGG
1 TTTAGGG
119882014 TTTAGGG
1 TTTAGGG
119882021 TTTA-GG
1 TTTAGGG
119882027 TTTAGGG
1 TTTAGGG
119882034 TTTAGGG
1 TTTAGGG
119882041 TTTAGGG
1 TTTAGGG
119882048 TTTAGGG
1 TTTAGGG
119882055 TTTA-GG
1 TTTAGGG
119882061 TTTAGGG
1 TTTAGGG
119882068 TTTAGGG
1 TTTAGGG
119882075 TTTAGGG
1 TTTAGGG
119882082 TTTAGGG
1 TTTAGGG
*
119882089 TTTTTGGG
1 -TTTAGGG
119882097 TTTAGGG
1 TTTAGGG
119882104 TTTAGGG
1 TTTAGGG
119882111 TTTAGGG
1 TTTAGGG
119882118 TTTAGGG
1 TTTAGGG
119882125 TTTAGGG
1 TTTAGGG
119882132 TTTAGGG
1 TTTAGGG
119882139 TTTAGGG
1 TTTAGGG
119882146 TTTAGGG
1 TTTAGGG
119882153 TTTAGGG
1 TTTAGGG
119882160 TTTAGGG
1 TTTAGGG
119882167 TTTAGGG
1 TTTAGGG
119882174 TTTAGGG
1 TTTAGGG
119882181 TTT---G
1 TTTAGGG
119882185 TTTAGGG
1 TTTAGGG
119882192 TTTAGGG
1 TTTAGGG
119882199 TTTAGGG
1 TTTAGGG
119882206 TTTAGGG
1 TTTAGGG
119882213 TTTAGGG
1 TTTAGGG
119882220 TTTAGGG
1 TTTAGGG
119882227 TTTTAGGG
1 -TTTAGGG
119882235 TTTAGGG
1 TTTAGGG
119882242 TTTAGGG
1 TTTAGGG
119882249 TTTAGGG
1 TTTAGGG
119882256 TTTAGGG
1 TTTAGGG
119882263 TTTAGGG
1 TTTAGGG
119882270 TTTAGGG
1 TTTAGGG
119882277 TTTAGGG
1 TTTAGGG
119882284 TTTAGGG
1 TTTAGGG
119882291 TTTTAGGG
1 -TTTAGGG
119882299 TTT--GG
1 TTTAGGG
119882304 TTTAGGG
1 TTTAGGG
119882311 -TT-GGG
1 TTTAGGG
119882316 TTTAGGG
1 TTTAGGG
119882323 TTTAGGG
1 TTTAGGG
119882330 TTTAGGG
1 TTTAGGG
119882337 TTTAGGG
1 TTTAGGG
119882344 TTTTAGGG
1 -TTTAGGG
119882352 TTTAG
1 TTTAG
Statistics
Matches: 4905, Mismatches: 45, Indels: 238
0.95 0.01 0.05
Matches are distributed among these distances:
4 6 0.00
5 45 0.01
6 272 0.06
7 4290 0.87
8 247 0.05
9 34 0.01
10 11 0.00
ACGTcount: A:0.14, C:0.00, G:0.43, T:0.43
Consensus pattern (7 bp):
TTTAGGG
Done.