Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 37 of 362
Found at i:10864121 original size:13 final size:14
Alignment explanation
Indices: 10864105--10864133 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
10864095 ATTTGTTTTC
10864105 TTTATTTA-TTTAT
1 TTTATTTACTTTAT
10864118 TTTATTTACTTTAT
1 TTTATTTACTTTAT
10864132 TT
1 TT
10864134 AAATATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTATTTACTTTAT
Found at i:10869783 original size:23 final size:23
Alignment explanation
Indices: 10869746--10869791 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
10869736 AATACATATG
*
10869746 TATTACAAATGTACA-TATGTATT
1 TATTACAAATATACACTAT-TATT
*
10869769 TATTACACATATACACTATTATT
1 TATTACAAATATACACTATTATT
10869792 ACCACACAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 17 0.85
24 3 0.15
ACGTcount: A:0.39, C:0.13, G:0.04, T:0.43
Consensus pattern (23 bp):
TATTACAAATATACACTATTATT
Found at i:10869831 original size:13 final size:14
Alignment explanation
Indices: 10869815--10869843 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
10869805 CATAATTTGA
10869815 TTTATTTA-TTTAT
1 TTTATTTACTTTAT
10869828 TTTATTTACTTTAT
1 TTTATTTACTTTAT
10869842 TT
1 TT
10869844 AATTAATATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTATTTACTTTAT
Found at i:10877313 original size:9 final size:9
Alignment explanation
Indices: 10877301--10877338 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
10877291 TAAAAATTTA
10877301 TAAAAAAAT
1 TAAAAAAAT
10877310 T--AAAAAT
1 TAAAAAAAT
10877317 TAAAAATAAT
1 TAAAAA-AAT
10877327 TAAAAAAAT
1 TAAAAAAAT
10877336 TAA
1 TAA
10877339 TGTGACAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
7 7 0.27
9 10 0.38
10 9 0.35
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (9 bp):
TAAAAAAAT
Found at i:10877327 original size:17 final size:19
Alignment explanation
Indices: 10877291--10877332 Score: 61
Period size: 17 Copynumber: 2.3 Consensus size: 19
10877281 TATAAAATCC
10877291 TAAAAATTTATAAAAAAAT
1 TAAAAATTTATAAAAAAAT
*
10877310 TAAAAA-TTA-AAAATAAT
1 TAAAAATTTATAAAAAAAT
10877327 TAAAAA
1 TAAAAA
10877333 AATTAATGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 13 0.59
18 3 0.14
19 6 0.27
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (19 bp):
TAAAAATTTATAAAAAAAT
Found at i:10881194 original size:216 final size:214
Alignment explanation
Indices: 10880768--10881203 Score: 579
Period size: 214 Copynumber: 2.0 Consensus size: 214
10880758 TTAATCCATT
* * * * *
10880768 TTCATTAATTGTCATTGATTAAGTAATAGAAAACTAAAGTGGCAGTTCTAAATTGATAAAATATG
1 TTCATTAACTGTCATTGACTAAGCAATAGAAAACTAAAGTGCCAGTTCTAAATTGATAAAATAAG
*
10880833 AAATTTAGCTATATGAAATTTATACATTATATAAATTTGATCTCAAATTTTTAAAAAATTAACCC
66 AAATTTAGCTATATGAAAGTTATACATTATATAAATTTGATCTCAAATTTTTAAAAAATTAACCC
* * * * * * **
10880898 TCATTATTTACGTATTATGTAATTAAGTCATTACATACATGGGCATCCCTTCTTGGTTTACACCT
131 TCAATATTTACATATTATGTAATTAAGCCATGACATACATGAGCATCCCTTCCTAATTTACACCT
*
10880963 TCCAAAAATACCCATACCA
196 TCCAAAAACACCCATACCA
* *** * *
10880982 TTCATTAACTGTCATTGACTAAGCAATGGAAAACTTTTGTGACCA-TTCTAAATTGGTATAATAA
1 TTCATTAACTGTCATTGACTAAGCAATAGAAAACTAAAGTG-CCAGTTCTAAATTGATAAAATAA
* * * * *
10881046 GAAATTTA-ATCATCTGACAGTTATACATTATATCAATTTGATCTCAATTTTTTAAAAAAAATTA
65 GAAATTTAGCT-ATATGAAAGTTATACATTATATAAATTTGATCTCAAATTTTT--AAAAAATTA
*
10881110 ACCCTCAATATTTACATATTATGTAATTAAGCCATGACATACATTAGCATCCCTTCCTAATTTAC
127 ACCCTCAATATTTACATATTATGTAATTAAGCCATGACATACATGAGCATCCCTTCCTAATTTAC
10881175 ACCTTCCAAAAACACCCATACCA
192 ACCTTCCAAAAACACCCATACCA
10881198 TTCATT
1 TTCATT
10881204 CGACTCATTC
Statistics
Matches: 191, Mismatches: 27, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
213 1 0.01
214 95 0.50
215 2 0.01
216 93 0.49
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.36
Consensus pattern (214 bp):
TTCATTAACTGTCATTGACTAAGCAATAGAAAACTAAAGTGCCAGTTCTAAATTGATAAAATAAG
AAATTTAGCTATATGAAAGTTATACATTATATAAATTTGATCTCAAATTTTTAAAAAATTAACCC
TCAATATTTACATATTATGTAATTAAGCCATGACATACATGAGCATCCCTTCCTAATTTACACCT
TCCAAAAACACCCATACCA
Found at i:10895841 original size:49 final size:49
Alignment explanation
Indices: 10895786--10895980 Score: 309
Period size: 49 Copynumber: 4.0 Consensus size: 49
10895776 TTCGTTTTCT
* * *
10895786 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCACAAATCACATAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAAATCACATAC
* * *
10895835 CGATGCCATAGCCCAGCTATGGTCTTACACGAAATCACATATCACTTAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAAATCACATAC
* *
10895884 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACTTAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAAATCACATAC
10895933 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCACAT
1 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACA-AATCACAT
10895981 GTTCACATGT
Statistics
Matches: 137, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
49 131 0.96
50 6 0.04
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (49 bp):
CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAAATCACATAC
Found at i:10897299 original size:37 final size:37
Alignment explanation
Indices: 10897234--10897379 Score: 233
Period size: 37 Copynumber: 4.0 Consensus size: 37
10897224 TACGTATGAT
* *
10897234 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
* *
10897269 CACCTATCACTTTGTTTCTTGATCACATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
10897306 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
10897343 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
10897380 TAAAGCTATC
Statistics
Matches: 102, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 90 0.88
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:10897396 original size:46 final size:46
Alignment explanation
Indices: 10897343--10897709 Score: 446
Period size: 46 Copynumber: 7.6 Consensus size: 46
10897333 TAAGTGTAGC
* **
10897343 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
10897389 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
10897435 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
10897487 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
10897539 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
10897585 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
10897631 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
10897683 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
10897710 AGTACTCAAA
Statistics
Matches: 291, Mismatches: 17, Indels: 26
0.87 0.05 0.08
Matches are distributed among these distances:
46 155 0.53
48 1 0.00
49 1 0.00
50 2 0.01
51 3 0.01
52 129 0.44
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:10897462 original size:52 final size:52
Alignment explanation
Indices: 10897386--10897703 Score: 426
Period size: 52 Copynumber: 6.3 Consensus size: 52
10897376 TAGCTAAAGC
* *
10897386 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
10897439 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * *
10897491 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
10897543 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
10897589 TATCAC-TTT-A----TCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
10897635 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
10897687 TATCACTTTATCACTTG
1 TATCACTTT-TCACTTG
10897704 ATCAGAAGTA
Statistics
Matches: 239, Mismatches: 16, Indels: 20
0.87 0.06 0.07
Matches are distributed among these distances:
46 84 0.35
47 2 0.01
48 2 0.01
52 133 0.56
53 18 0.08
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:10897465 original size:98 final size:98
Alignment explanation
Indices: 10897343--10897709 Score: 503
Period size: 98 Copynumber: 3.7 Consensus size: 98
10897333 TAAGTGTAGC
* * * * *
10897343 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACT
10897408 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
10897442 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCACTTG
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTT--A----
* *
10897507 TCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTAT
60 TCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
10897546 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTATCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTT
*
10897605 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* * *
10897638 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTT
10897703 GATCAGA
66 GATCAGA
10897710 AGTACTCAAA
Statistics
Matches: 239, Mismatches: 17, Indels: 25
0.85 0.06 0.09
Matches are distributed among these distances:
92 39 0.16
96 1 0.00
98 150 0.63
99 9 0.04
101 1 0.00
104 39 0.16
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:10897584 original size:196 final size:196
Alignment explanation
Indices: 10897343--10897695 Score: 607
Period size: 196 Copynumber: 1.8 Consensus size: 196
10897333 TAAGTGTAGC
* * * * *
10897343 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCACT
*
10897408 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTTCACTTGTCACTTGATCAGATAAGT
66 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
* *
10897473 GTAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
131 GTAGCCAAAGCTACCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
10897538 T
196 T
*
10897539 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTATCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCACT
*
10897604 TGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
66 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
*
10897669 GTAGCTAAAGCTACCACTTATCACTTT
131 GTAGCCAAAGCTACCACTTATCACTTT
10897696 ATCACTTGAT
Statistics
Matches: 146, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
196 146 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (196 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCACT
TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
GTAGCCAAAGCTACCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
T
Found at i:10899727 original size:2 final size:2
Alignment explanation
Indices: 10899720--10900005 Score: 159
Period size: 2 Copynumber: 149.5 Consensus size: 2
10899710 CTATTACAGG
* * * *
10899720 GA GA GA GA GA GG GA GA GG GA GA GA -A G- GA GA GG GA G- GG GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * *
10899759 GG GC G- GA GA GA GA GA GA GA GA GA GA GA GA GA GG GA GA GC GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * * *
10899800 GG GA -A GG GG GA GA GA GA GG GA GA GA GG GA GA GA GG GA GA -A
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * *
10899840 CA -A GG GA TGG GG GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA -GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * *
10899882 GA GA GA GG GA GA GA G- GA GG GA GA GA GA GG GA GA GG GG GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * * *
10899923 GA GA GA GG GA GC GA GG GA G- GG GA G- GG GA -A GA GA GA GG GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * *
10899962 GA GA GA GA GG GA G- GG GA G- GG GA G- GG GA GA GA GA GA GA GG
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
10900001 GA GA G
1 GA GA G
10900006 TGAGTTTATT
Statistics
Matches: 217, Mismatches: 52, Indels: 30
0.73 0.17 0.10
Matches are distributed among these distances:
1 14 0.06
2 202 0.93
3 1 0.00
ACGTcount: A:0.37, C:0.01, G:0.61, T:0.00
Consensus pattern (2 bp):
GA
Found at i:10899947 original size:5 final size:5
Alignment explanation
Indices: 10899937--10899989 Score: 52
Period size: 5 Copynumber: 10.0 Consensus size: 5
10899927 GAGGGAGCGA
* * *
10899937 GGGAG GGGAG GGGAA GAGAG AGGGAG AGAGAG AGGGAG GGGAG GGGAG
1 GGGAG GGGAG GGGAG GGGAG -GGGAG -GGGAG -GGGAG GGGAG GGGAG
10899985 GGGAG
1 GGGAG
10899990 AGAGAGAGAG
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
5 27 0.66
6 14 0.34
ACGTcount: A:0.30, C:0.00, G:0.70, T:0.00
Consensus pattern (5 bp):
GGGAG
Found at i:10900402 original size:30 final size:31
Alignment explanation
Indices: 10900324--10900388 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
10900314 CAGTCTAGTG
10900324 ACTTAAA-GACAAACTTTTGAATAATTAAATA
1 ACTTAAACGA-AAACTTTTGAATAATTAAATA
*
10900355 ACTTAAACGAAAACTTTTGAATAATTTAATA
1 ACTTAAACGAAAACTTTTGAATAATTAAATA
10900386 ACT
1 ACT
10900389 AAATTGTAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 30 0.94
32 2 0.06
ACGTcount: A:0.49, C:0.11, G:0.06, T:0.34
Consensus pattern (31 bp):
ACTTAAACGAAAACTTTTGAATAATTAAATA
Found at i:10902442 original size:36 final size:36
Alignment explanation
Indices: 10902393--10902469 Score: 145
Period size: 36 Copynumber: 2.1 Consensus size: 36
10902383 CAATGAAGCT
10902393 CACAAGTGCATGAAAGAAAAGTATGAAAATATTTGA
1 CACAAGTGCATGAAAGAAAAGTATGAAAATATTTGA
*
10902429 CACAAGTGTATGAAAGAAAAGTATGAAAATATTTGA
1 CACAAGTGCATGAAAGAAAAGTATGAAAATATTTGA
10902465 CACAA
1 CACAA
10902470 ATGTTGTTTG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.51, C:0.09, G:0.18, T:0.22
Consensus pattern (36 bp):
CACAAGTGCATGAAAGAAAAGTATGAAAATATTTGA
Found at i:10902754 original size:20 final size:20
Alignment explanation
Indices: 10902719--10902764 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
10902709 TTGATAAAAC
*
10902719 CGATACCAAGATAAAGTTAT
1 CGATACCAAGATAAAGGTAT
10902739 CGATACCAA-ATAAAAGGTAT
1 CGATACCAAGAT-AAAGGTAT
*
10902759 CTATAC
1 CGATAC
10902765 TAGATAGATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 2 0.09
20 21 0.91
ACGTcount: A:0.46, C:0.17, G:0.13, T:0.24
Consensus pattern (20 bp):
CGATACCAAGATAAAGGTAT
Found at i:10905478 original size:21 final size:19
Alignment explanation
Indices: 10905440--10905480 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
10905430 AAAGGGTGAG
*
10905440 AAATACAAATTTTAGGGAA
1 AAATAAAAATTTTAGGGAA
10905459 AAATAAAAAGTTTTGAGGGAA
1 AAATAAAAA-TTTT-AGGGAA
10905480 A
1 A
10905481 TTCTATTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
20 4 0.21
21 7 0.37
ACGTcount: A:0.54, C:0.02, G:0.20, T:0.24
Consensus pattern (19 bp):
AAATAAAAATTTTAGGGAA
Found at i:10911011 original size:24 final size:24
Alignment explanation
Indices: 10910975--10911023 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
10910965 TATCTAATGT
* *
10910975 TATATGAAAGCCTTTGTGGCTATC
1 TATATGAAAGCCTCTATGGCTATC
*
10910999 TATATGAACGCCTCTATGGCTATC
1 TATATGAAAGCCTCTATGGCTATC
10911023 T
1 T
10911024 TGTGAATGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.37
Consensus pattern (24 bp):
TATATGAAAGCCTCTATGGCTATC
Found at i:10917054 original size:25 final size:25
Alignment explanation
Indices: 10917021--10917080 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
10917011 GCCCTCTATC
*
10917021 GAGCTATATAATAG-GAAGCTCATAT
1 GAGCCATATAA-AGAGAAGCTCATAT
* *
10917046 GAGCCATATAACGAGAAGCTCATGT
1 GAGCCATATAAAGAGAAGCTCATAT
10917071 GAGCCA-ATAA
1 GAGCCATATAA
10917081 CGGGTAGCTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 5 0.16
25 26 0.84
ACGTcount: A:0.40, C:0.17, G:0.22, T:0.22
Consensus pattern (25 bp):
GAGCCATATAAAGAGAAGCTCATAT
Found at i:10917089 original size:24 final size:25
Alignment explanation
Indices: 10917035--10917082 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
10917025 TATATAATAG
10917035 GAAGCTCATATGAGCCATATAACGA
1 GAAGCTCATATGAGCCATATAACGA
*
10917060 GAAGCTCATGTGAGCCA-ATAACG
1 GAAGCTCATATGAGCCATATAACG
10917083 GGTAGCTTCG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 6 0.27
25 16 0.73
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.19
Consensus pattern (25 bp):
GAAGCTCATATGAGCCATATAACGA
Found at i:10917136 original size:25 final size:24
Alignment explanation
Indices: 10917094--10917176 Score: 87
Period size: 25 Copynumber: 3.4 Consensus size: 24
10917084 GTAGCTTCGA
* *
10917094 AGAGCCATTAAACTGGAAGCTCTAG
1 AGAGCCATT-ATCGGGAAGCTCTAG
* * *
10917119 ATAGCCATGTATCGGGAAGTTCAAG
1 AGAGCCAT-TATCGGGAAGCTCTAG
*
10917144 AGAGCCA-TATCGGAAAGCTCTAG
1 AGAGCCATTATCGGGAAGCTCTAG
10917167 AGAGCCATTA
1 AGAGCCATTA
10917177 ATCAAGAAAC
Statistics
Matches: 47, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
23 20 0.43
24 2 0.04
25 24 0.51
26 1 0.02
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.20
Consensus pattern (24 bp):
AGAGCCATTATCGGGAAGCTCTAG
Found at i:10917168 original size:23 final size:23
Alignment explanation
Indices: 10917110--10917174 Score: 76
Period size: 23 Copynumber: 2.7 Consensus size: 23
10917100 ATTAAACTGG
* *
10917110 AAGCTCTAGATAGCCATGTATCGGG
1 AAGCTCTAGAGAGCCA--TATCGGA
* *
10917135 AAGTTCAAGAGAGCCATATCGGA
1 AAGCTCTAGAGAGCCATATCGGA
10917158 AAGCTCTAGAGAGCCAT
1 AAGCTCTAGAGAGCCAT
10917175 TAATCAAGAA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
23 21 0.62
25 13 0.38
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (23 bp):
AAGCTCTAGAGAGCCATATCGGA
Found at i:10917196 original size:26 final size:27
Alignment explanation
Indices: 10917167--10917226 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 27
10917157 AAAGCTCTAG
10917167 AGAGCCATTAATCAAGAAACTCAC-AA
1 AGAGCCATTAATCAAGAAACTCACGAA
* * *
10917193 AGAGCCTTTAATCAGGAAGCTCACGAA
1 AGAGCCATTAATCAAGAAACTCACGAA
10917220 A-AGCCAT
1 AGAGCCAT
10917227 ATAACGGGAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 26 0.90
27 3 0.10
ACGTcount: A:0.43, C:0.23, G:0.17, T:0.17
Consensus pattern (27 bp):
AGAGCCATTAATCAAGAAACTCACGAA
Found at i:10921348 original size:45 final size:45
Alignment explanation
Indices: 10921298--10921471 Score: 201
Period size: 45 Copynumber: 3.9 Consensus size: 45
10921288 ATACCATAAA
* ** *
10921298 CGAGTAAGACCACGACTGAAAGAAATTATGGCATCATGATT-TTAAT
1 CGAGTAAGACCATGACTGAAAGATGTTATGGCATCACGATTCTT--T
* *
10921344 -GAGTAAAACAATGACTGAAAGATGTTATGGCATCACGATTCTTT
1 CGAGTAAGACCATGACTGAAAGATGTTATGGCATCACGATTCTTT
* *
10921388 CGAGTAAGACCATGACTGAAAGATGTTATGGCATCACGATCCTAT
1 CGAGTAAGACCATGACTGAAAGATGTTATGGCATCACGATTCTTT
* * *
10921433 CGGGTAAGACCAT-AGTTGAAAGATGCTATGGCATCACGA
1 CGAGTAAGACCATGA-CTGAAAGATGTTATGGCATCACGA
10921472 ATCAAACGAA
Statistics
Matches: 112, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
44 2 0.02
45 108 0.96
46 2 0.02
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (45 bp):
CGAGTAAGACCATGACTGAAAGATGTTATGGCATCACGATTCTTT
Found at i:10921486 original size:45 final size:44
Alignment explanation
Indices: 10921359--10921513 Score: 168
Period size: 45 Copynumber: 3.5 Consensus size: 44
10921349 AAACAATGAC
* * * *
10921359 TGAAAGATGTTATGGCATCACGATTCTTTCGAGTAAGACCATGAC
1 TGAAAGATGCTATGGCATCACGAATCTATCGAGTAAGACCATG-T
* *
10921404 TGAAAGATGTTATGGCATCACG-ATCCTATCGGGTAAGACCATAGT
1 TGAAAGATGCTATGGCATCACGAAT-CTATCGAGTAAGACCAT-GT
* * *
10921449 TGAAAGATGCTATGGCATCACGAATCAAACGAATAAGACCATGGT
1 TGAAAGATGCTATGGCATCACGAATCTATCGAGTAAGACCAT-GT
**
10921494 TGAAAGACACTATGGCATCA
1 TGAAAGATGCTATGGCATCA
10921514 AGACAAGAAT
Statistics
Matches: 95, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
44 1 0.01
45 91 0.96
46 3 0.03
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.25
Consensus pattern (44 bp):
TGAAAGATGCTATGGCATCACGAATCTATCGAGTAAGACCATGT
Found at i:10921529 original size:45 final size:44
Alignment explanation
Indices: 10921437--10921555 Score: 132
Period size: 45 Copynumber: 2.7 Consensus size: 44
10921427 TCCTATCGGG
* ** * *
10921437 TAAGACCATAGTTGAAAGATGCTATGGCATCACGAATCAAACGAA
1 TAAGACCATGGTTGAAAGACACTATGGCATCAAGAA-CAAACAAA
*
10921482 TAAGACCATGGTTGAAAGACACTATGGCATCAAG-ACAAGAATAAA
1 TAAGACCATGGTTGAAAGACACTATGGCATCAAGAAC-A-AACAAA
* *
10921527 TAAGACCAAGGTTGAAAGACACCATGGCA
1 TAAGACCATGGTTGAAAGACACTATGGCA
10921556 CACTCTGATC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
43 1 0.02
44 2 0.03
45 61 0.95
ACGTcount: A:0.44, C:0.18, G:0.21, T:0.18
Consensus pattern (44 bp):
TAAGACCATGGTTGAAAGACACTATGGCATCAAGAACAAACAAA
Found at i:10923575 original size:42 final size:42
Alignment explanation
Indices: 10923519--10923611 Score: 141
Period size: 42 Copynumber: 2.2 Consensus size: 42
10923509 TGGGACACTT
*
10923519 CCGTGTGTCTCTATTTCAAATGTTACACGGCTTGAGACACGG
1 CCGTGTGTCCCTATTTCAAATGTTACACGGCTTGAGACACGG
**
10923561 CCGTGTGTCCCTATTTTGAATGTTACACGGCTTGAGACACGG
1 CCGTGTGTCCCTATTTCAAATGTTACACGGCTTGAGACACGG
**
10923603 GTGTGTGTC
1 CCGTGTGTC
10923612 TCAGCTGTGT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.18, C:0.23, G:0.27, T:0.32
Consensus pattern (42 bp):
CCGTGTGTCCCTATTTCAAATGTTACACGGCTTGAGACACGG
Found at i:10928950 original size:46 final size:46
Alignment explanation
Indices: 10928833--10929142 Score: 415
Period size: 46 Copynumber: 6.7 Consensus size: 46
10928823 GCTACCTGAT
10928833 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * * *
10928879 GGGAAAATGAATAAGACCATCGTTGAAAGATACCATGGCAACGTGAT
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
10928926 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACGTGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
10928972 ACGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
10929018 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
10929064 GGGAAAATGAATAAGACCAAGGTTGAAAGATACCATGGCAACATGAC
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
10929111 A-GAAAATGAGTAAAACCATAGTTGAAAGATAC
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATAC
10929143 TATGACATCA
Statistics
Matches: 232, Mismatches: 30, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
46 151 0.65
47 81 0.35
ACGTcount: A:0.43, C:0.15, G:0.24, T:0.19
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:10929104 original size:93 final size:93
Alignment explanation
Indices: 10928826--10929142 Score: 485
Period size: 93 Copynumber: 3.4 Consensus size: 93
10928816 GGAGTGTGCT
*
10928826 ACCTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAAT
1 ACCTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAAT
*
10928891 AAGACCATCGTTGAAAGATACCATGGCA
66 AAGACCATGGTTGAAAGATACCATGGCA
* * * * * ***
10928919 ACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACGTGATACG-AAATGAAT
1 ACCTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAAT
10928983 AAGACCATGGTTGAAAGATACCATGGCA
66 AAGACCATGGTTGAAAGATACCATGGCA
10929011 ACCTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAAT
1 ACCTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAAT
*
10929076 AAGACCAAGGTTGAAAGATACCATGGCA
66 AAGACCATGGTTGAAAGATACCATGGCA
* * *
10929104 ACATGACA-GAAAATGAGTAAAACCATAGTTGAAAGATAC
1 ACCTGACATG-AAATGAGTAAGACCATGGTTGAAAGATAC
10929143 TATGACATCA
Statistics
Matches: 202, Mismatches: 20, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
92 84 0.42
93 118 0.58
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.19
Consensus pattern (93 bp):
ACCTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAAT
AAGACCATGGTTGAAAGATACCATGGCA
Found at i:10931105 original size:53 final size:52
Alignment explanation
Indices: 10930957--10931112 Score: 181
Period size: 52 Copynumber: 3.0 Consensus size: 52
10930947 TGACGGAAAA
*
10930957 GATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTAC
1 GATGTGATATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTAC
* * * **
10931009 AATGTGAT-T-CGAGTTCCCGTATAAAACCATAGCTGGGCTATGGCATCGGTGT
1 GATGTGATATGTGA-TT-CCGTATAAGACCATAGCTGGGCTATGGCATCGGTAC
** * *
10931061 GATGTGATAATGTGATTCCGTATAAGACCATTTCTAGGATATGGCATCGGTA
1 GATGTGAT-ATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTA
10931113 TGTTATGTGA
Statistics
Matches: 85, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
50 1 0.01
51 3 0.04
52 47 0.55
53 29 0.34
54 3 0.04
55 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (52 bp):
GATGTGATATGTGATTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTAC
Found at i:10943071 original size:115 final size:115
Alignment explanation
Indices: 10942866--10943099 Score: 360
Period size: 115 Copynumber: 2.0 Consensus size: 115
10942856 AATTTAGAGT
* * *
10942866 GGTTCGACCCCAATTGCCTACTCCACTACCTTAGCTTTCTACAACCAAGGAATTTCCTAAATTCA
1 GGTTCGACCCCAATTGCCTACTCCACAACCTTAGCTTTCTACAACCAAAGAATTTCCCAAATTCA
*
10942931 CTAATTTGAGAACCTTTGAGAACAATGTTTAACCTTACAAACTCCCTTAA
66 CTAATTTGAGAACCTTTGAGAACAATGTTTAACCTTACAAACTACCTTAA
* * * * *
10942981 GGTTCGGCCCCAATTGCCTACTCTACAACTTTAGCTTTCTACAACTAAAGATTTTCCCAAATTCA
1 GGTTCGACCCCAATTGCCTACTCCACAACCTTAGCTTTCTACAACCAAAGAATTTCCCAAATTCA
* * *
10943046 CTAATTTGATAACCTTTGAGGACAATGTTTAACCTTACAAACTACTTTAA
66 CTAATTTGAGAACCTTTGAGAACAATGTTTAACCTTACAAACTACCTTAA
10943096 GGTT
1 GGTT
10943100 TCTACTCAAA
Statistics
Matches: 107, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
115 107 1.00
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.32
Consensus pattern (115 bp):
GGTTCGACCCCAATTGCCTACTCCACAACCTTAGCTTTCTACAACCAAAGAATTTCCCAAATTCA
CTAATTTGAGAACCTTTGAGAACAATGTTTAACCTTACAAACTACCTTAA
Found at i:10943202 original size:41 final size:41
Alignment explanation
Indices: 10943157--10943237 Score: 144
Period size: 41 Copynumber: 2.0 Consensus size: 41
10943147 GTAAACAAAG
10943157 AAAGAACCCATACAGGATAAAAGTGTTTGCAAATTAAGCTT
1 AAAGAACCCATACAGGATAAAAGTGTTTGCAAATTAAGCTT
* *
10943198 AAAGAATCCATACAGGATCAAAGTGTTTGCAAATTAAGCT
1 AAAGAACCCATACAGGATAAAAGTGTTTGCAAATTAAGCT
10943238 CAATTACAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.25
Consensus pattern (41 bp):
AAAGAACCCATACAGGATAAAAGTGTTTGCAAATTAAGCTT
Found at i:10952937 original size:23 final size:23
Alignment explanation
Indices: 10952910--10952955 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
10952900 CACCAAAATT
10952910 ACAAGAAAATGGATTAAATTGAC
1 ACAAGAAAATGGATTAAATTGAC
10952933 ACAAGAAAATGGATTAAATTGAC
1 ACAAGAAAATGGATTAAATTGAC
10952956 TTATCAATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.52, C:0.09, G:0.17, T:0.22
Consensus pattern (23 bp):
ACAAGAAAATGGATTAAATTGAC
Found at i:10953028 original size:20 final size:18
Alignment explanation
Indices: 10952990--10953033 Score: 63
Period size: 20 Copynumber: 2.4 Consensus size: 18
10952980 AAACCCTAAT
10952990 TTTCCC-TTTTCTTTTTC
1 TTTCCCTTTTTCTTTTTC
10953007 TTTCCCTTTTTCCTTCTTTC
1 TTTCCCTTTTT-CTT-TTTC
10953027 TTTCCCT
1 TTTCCCT
10953034 GCTAATCGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.25
18 4 0.17
19 3 0.12
20 11 0.46
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTCCCTTTTTCTTTTTC
Found at i:10959977 original size:18 final size:18
Alignment explanation
Indices: 10959950--10960012 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 18
10959940 TCAGAATTCT
*
10959950 TCAATTTATACAACTTAA
1 TCAATATATACAACTTAA
* *
10959968 TCAATATATA-AAGATTCA
1 TCAATATATACAA-CTTAA
* *
10959986 -CTATTTATACAACTTAA
1 TCAATATATACAACTTAA
10960003 TCAATATATA
1 TCAATATATA
10960013 AAGATTCACT
Statistics
Matches: 33, Mismatches: 9, Indels: 6
0.69 0.19 0.12
Matches are distributed among these distances:
17 12 0.36
18 21 0.64
ACGTcount: A:0.46, C:0.14, G:0.02, T:0.38
Consensus pattern (18 bp):
TCAATATATACAACTTAA
Found at i:10959999 original size:35 final size:35
Alignment explanation
Indices: 10959953--10960024 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
10959943 GAATTCTTCA
10959953 ATTTATACAACTTAATCAATATATAAAGATTCACT
1 ATTTATACAACTTAATCAATATATAAAGATTCACT
10959988 ATTTATACAACTTAATCAATATATAAAGATTCACT
1 ATTTATACAACTTAATCAATATATAAAGATTCACT
10960023 AT
1 AT
10960025 CTTCCTAAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.46, C:0.14, G:0.03, T:0.38
Consensus pattern (35 bp):
ATTTATACAACTTAATCAATATATAAAGATTCACT
Found at i:10967600 original size:23 final size:22
Alignment explanation
Indices: 10967564--10967607 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
10967554 TTTATAAAAT
*
10967564 TTAGTTTAGTTTTCTTTCATTC
1 TTAGTTTAGATTTCTTTCATTC
10967586 TTAGTTTTAGATTTCTTTCATT
1 TTAG-TTTAGATTTCTTTCATT
10967608 TGCTCTTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.16, C:0.11, G:0.09, T:0.64
Consensus pattern (22 bp):
TTAGTTTAGATTTCTTTCATTC
Found at i:10968186 original size:15 final size:14
Alignment explanation
Indices: 10968163--10968197 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
10968153 TCTTGAGCTT
10968163 TTATTTCTTTTATG
1 TTATTTCTTTTATG
*
10968177 TTATTATCTTTTATT
1 TTATT-TCTTTTATG
10968192 TTATTT
1 TTATTT
10968198 TATTATTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.17, C:0.06, G:0.03, T:0.74
Consensus pattern (14 bp):
TTATTTCTTTTATG
Found at i:10968514 original size:21 final size:21
Alignment explanation
Indices: 10968488--10968529 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
10968478 TGATGATTTT
10968488 GAATG-TTGTTCATGGCATGTA
1 GAATGTTTG-TCATGGCATGTA
10968509 GAATGTTTGTCATGGCATGTA
1 GAATGTTTGTCATGGCATGTA
10968530 ATTGAAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.24, C:0.10, G:0.29, T:0.38
Consensus pattern (21 bp):
GAATGTTTGTCATGGCATGTA
Found at i:10978746 original size:31 final size:29
Alignment explanation
Indices: 10978711--10978793 Score: 71
Period size: 31 Copynumber: 2.8 Consensus size: 29
10978701 TGATAAAGCC
10978711 AAGTTTAGGTACCAATTTGAACCAAGAAACT
1 AAGTTTAGGTACCAATTTGAACCAA-AAA-T
* * * * *
10978742 AAGTTCAGGTGCCAAATTGGA-CTAAAAT
1 AAGTTTAGGTACCAATTTGAACCAAAAAT
10978770 AAGTTTTAGGTACCAAATTT-AACC
1 AAG-TTTAGGTACC-AATTTGAACC
10978794 TTAAAGCCAA
Statistics
Matches: 40, Mismatches: 9, Indels: 7
0.71 0.16 0.12
Matches are distributed among these distances:
28 4 0.10
29 12 0.30
30 7 0.17
31 17 0.43
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.28
Consensus pattern (29 bp):
AAGTTTAGGTACCAATTTGAACCAAAAAT
Found at i:10993807 original size:20 final size:20
Alignment explanation
Indices: 10993771--10993810 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
10993761 TTAAAAAATT
*
10993771 ATAATTTTTATACTTTTTAA
1 ATAATTTTAATACTTTTTAA
10993791 ATAATTTTAATGA-TTTTTAA
1 ATAATTTTAAT-ACTTTTTAA
10993811 TTTTAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 17 0.94
21 1 0.06
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (20 bp):
ATAATTTTAATACTTTTTAA
Found at i:10993837 original size:18 final size:19
Alignment explanation
Indices: 10993803--10993840 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
10993793 AATTTTAATG
10993803 ATTTTTAATTTTAAAAAAT
1 ATTTTTAATTTTAAAAAAT
10993822 ATTTTTAATTTTAAAAAAT
1 ATTTTTAATTTTAAAAAAT
10993841 TAATTAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTTTTAATTTTAAAAAAT
Found at i:10993847 original size:18 final size:19
Alignment explanation
Indices: 10993807--10993847 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
10993797 TTAATGATTT
**
10993807 TTAATTTTAAAAAATATTT
1 TTAATTTTAAAAAATATAA
10993826 TTAATTTTAAAAAAT-TAA
1 TTAATTTTAAAAAATATAA
10993844 TTAA
1 TTAA
10993848 ATATTGATCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
TTAATTTTAAAAAATATAA
Found at i:10995951 original size:12 final size:12
Alignment explanation
Indices: 10995934--10995963 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
10995924 TTAGGCTATT
10995934 ACATGGCCTAGC
1 ACATGGCCTAGC
*
10995946 ACATGGCCTGGC
1 ACATGGCCTAGC
10995958 ACATGG
1 ACATGG
10995964 ACGTGTGAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.30, G:0.30, T:0.17
Consensus pattern (12 bp):
ACATGGCCTAGC
Found at i:11017348 original size:75 final size:77
Alignment explanation
Indices: 11017269--11017421 Score: 213
Period size: 75 Copynumber: 2.0 Consensus size: 77
11017259 CAATTTTTAA
*
11017269 GGTAAATTGTAAATAAGTATAT-TATTGATGTAAAAATATAATA-GA-ATACAATACAAACAAAT
1 GGTAAATTGTAAATAAGTATATATATTGATGTAAAAATATAATACAATATACAATACAAAC-AAT
*
11017331 TTTTTATTTTTTT
65 TTGTTATTTTTTT
* * *
11017344 GGTAAATTGTAAATAAGTATATACTATTGGTGTAAAAATTTATTACAATATACAATACAAACAAT
1 GGTAAATTGTAAATAAGTATATA-TATTGATGTAAAAATATAATACAATATACAATACAAACAAT
*
11017409 TTGTTCTTTTTTT
65 TTGTTATTTTTTT
11017422 TTATAAACAT
Statistics
Matches: 68, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
75 22 0.32
77 18 0.26
78 15 0.22
79 13 0.19
ACGTcount: A:0.42, C:0.06, G:0.10, T:0.42
Consensus pattern (77 bp):
GGTAAATTGTAAATAAGTATATATATTGATGTAAAAATATAATACAATATACAATACAAACAATT
TGTTATTTTTTT
Found at i:11017703 original size:6 final size:6
Alignment explanation
Indices: 11017689--11017722 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
11017679 TTCCACTTCA
* *
11017689 ACCTAC ACCTCC ACCTCC ACCTCC ACCTCT ACCT
1 ACCTCC ACCTCC ACCTCC ACCTCC ACCTCC ACCT
11017723 TGATCTTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.21, C:0.59, G:0.00, T:0.21
Consensus pattern (6 bp):
ACCTCC
Found at i:11023613 original size:68 final size:67
Alignment explanation
Indices: 11023541--11023690 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
11023531 CATCATGTGT
* * * *
11023541 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
11023603 ATGTAG
62 ATGTAG
** * *
11023609 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
11023674 AG
66 AG
11023676 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
11023691 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:11023646 original size:64 final size:64
Alignment explanation
Indices: 11023565--11023748 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
11023555 AGACATTATG
* *
11023565 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
11023629 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
11023694 AA
63 AA
* * * * *
11023696 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCTCCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
11023749 CGAACTATAT
Statistics
Matches: 97, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 21 0.22
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:11028242 original size:31 final size:31
Alignment explanation
Indices: 11028176--11028244 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
11028166 AGAAGGCACA
*
11028176 TGTCAGGCGACACCAGTAGAAGAAGAGAGAC
1 TGTCAGGCGACACCAGTAGAAGAAGAGACAC
* * * * *
11028207 TGTCAGGCGACACTAGTGGAAGGAGGGACAT
1 TGTCAGGCGACACCAGTAGAAGAAGAGACAC
11028238 TGTCAGG
1 TGTCAGG
11028245 TGGCACCGAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.32, C:0.17, G:0.36, T:0.14
Consensus pattern (31 bp):
TGTCAGGCGACACCAGTAGAAGAAGAGACAC
Found at i:11028312 original size:30 final size:29
Alignment explanation
Indices: 11028278--11028346 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 29
11028268 AAATTGAACA
*
11028278 GTTGTAGCAATTTGTGTGTTTTCTTGAATT
1 GTTGTAGCAATTT-TGTGTTTTCTTGAATG
* *
11028308 GTTGTAGTAAATTTTGTGTTTTGTTGAATG
1 GTTGTAG-CAATTTTGTGTTTTCTTGAATG
11028338 GTTGTAGCA
1 GTTGTAGCA
11028347 GTTAACCAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.03
30 28 0.82
31 5 0.15
ACGTcount: A:0.19, C:0.04, G:0.26, T:0.51
Consensus pattern (29 bp):
GTTGTAGCAATTTTGTGTTTTCTTGAATG
Found at i:11029625 original size:39 final size:39
Alignment explanation
Indices: 11029574--11029648 Score: 116
Period size: 39 Copynumber: 1.9 Consensus size: 39
11029564 ATGAAGCCTG
*
11029574 CTAGGCACTAAGCCTGATTAACACTA-GCACATAGCCCTA
1 CTAGGCACTAAGCCTGAATAACA-TAGGCACATAGCCCTA
*
11029613 CTAGGCATTAAGCCTGAATAACATAGGCACATAGCC
1 CTAGGCACTAAGCCTGAATAACATAGGCACATAGCC
11029649 TGAATAACAC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
38 2 0.06
39 31 0.94
ACGTcount: A:0.35, C:0.28, G:0.17, T:0.20
Consensus pattern (39 bp):
CTAGGCACTAAGCCTGAATAACATAGGCACATAGCCCTA
Found at i:11029648 original size:22 final size:22
Alignment explanation
Indices: 11029623--11029669 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
11029613 CTAGGCATTA
* *
11029623 AGCCTGAATAACATAGGCACAT
1 AGCCTGAATAACACAAGCACAT
11029645 AGCCTGAATAACACAAGCACAT
1 AGCCTGAATAACACAAGCACAT
11029667 AGC
1 AGC
11029670 AGGCACTAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.43, C:0.26, G:0.17, T:0.15
Consensus pattern (22 bp):
AGCCTGAATAACACAAGCACAT
Found at i:11034308 original size:24 final size:24
Alignment explanation
Indices: 11034276--11034325 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
11034266 ATACCAAGAC
* *
11034276 AAGTGTACCATTTACAACAAAATT
1 AAGTATACCATCTACAACAAAATT
11034300 AAGTATACCATCTACAACAAAATT
1 AAGTATACCATCTACAACAAAATT
11034324 AA
1 AA
11034326 TCTTGTTAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.18, G:0.06, T:0.26
Consensus pattern (24 bp):
AAGTATACCATCTACAACAAAATT
Found at i:11035337 original size:88 final size:88
Alignment explanation
Indices: 11035245--11035406 Score: 227
Period size: 88 Copynumber: 1.8 Consensus size: 88
11035235 AACCTCAAAC
* *
11035245 ATACCATTGT-AATATTTAATTAATTTTTTTATACTAATTAAGTAAGAAGCATACAAATAAGTAA
1 ATACCATT-TCAATATTTAATTAATTTTTTTATACTAATTAAATAACAAGCATACAAATAAGTAA
11035309 CAATACAAAAAGAAAATCTAATAT
65 CAATACAAAAAGAAAATCTAATAT
* * * * * *
11035333 ATACCATTTCAGTATTTATTTAGTTTTTTTGTACTAATTAAATGACAAGCATACAAATAAGTAAT
1 ATACCATTTCAATATTTAATTAATTTTTTTATACTAATTAAATAACAAGCATACAAATAAGTAAC
*
11035398 ACTACAAAA
66 AATACAAAA
11035407 CCAATTAAAA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
87 1 0.02
88 63 0.98
ACGTcount: A:0.46, C:0.10, G:0.07, T:0.36
Consensus pattern (88 bp):
ATACCATTTCAATATTTAATTAATTTTTTTATACTAATTAAATAACAAGCATACAAATAAGTAAC
AATACAAAAAGAAAATCTAATAT
Found at i:11037906 original size:5 final size:5
Alignment explanation
Indices: 11037896--11037923 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
11037886 TATATATATA
11037896 ATAAT ATAAT ATAAT ATAAT ATAAT ATA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATA
11037924 CTTAATTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATAAT
Found at i:11038745 original size:5 final size:5
Alignment explanation
Indices: 11038702--11038728 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
11038692 TATTAAATAT
11038702 TAAAA TAAAA TAAAA TAAAA TAAAA TA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TA
11038729 TTTTTAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
TAAAA
Found at i:11041722 original size:39 final size:41
Alignment explanation
Indices: 11041643--11041733 Score: 141
Period size: 39 Copynumber: 2.3 Consensus size: 41
11041633 TAAAAAGTAT
* *
11041643 TTATATTAAAAAACACTATCATAAATATAATAAATGTTTTA
1 TTATATTAAAAAACACTATAATAAATATAATAAATATTTTA
11041684 TTATATTAAAAAACAC-A-AATAAATATAATAAATATTTTA
1 TTATATTAAAAAACACTATAATAAATATAATAAATATTTTA
*
11041723 TTGTATTAAAA
1 TTATATTAAAA
11041734 TTTTGTATTT
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
39 30 0.64
40 1 0.02
41 16 0.34
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.38
Consensus pattern (41 bp):
TTATATTAAAAAACACTATAATAAATATAATAAATATTTTA
Found at i:11041849 original size:20 final size:19
Alignment explanation
Indices: 11041807--11041878 Score: 67
Period size: 20 Copynumber: 3.7 Consensus size: 19
11041797 CTAATAAATT
*
11041807 TAATTATTATTAAAT-TA-A
1 TAATTAATA-TAAATATATA
11041825 TAATTTAATATAAATATATA
1 TAA-TTAATATAAATATATA
* * *
11041845 TAATTATTATTTAACATATA
1 TAATTAATA-TAAATATATA
11041865 TAATTAATATAAAT
1 TAATTAATATAAAT
11041879 TTTTTATAAT
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
18 8 0.19
19 15 0.35
20 20 0.47
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (19 bp):
TAATTAATATAAATATATA
Found at i:11047158 original size:31 final size:31
Alignment explanation
Indices: 11047092--11047183 Score: 105
Period size: 31 Copynumber: 2.9 Consensus size: 31
11047082 AACTATGAAG
* * *
11047092 TTTTTTACTCAATTTGGTACTTGAACTTATCA
1 TTTTTT-CTTAATTTGGTACTTAAATTTATCA
*
11047124 TTTTTTCTTAATTTGGTACTTAAATTTGGT-A
1 TTTTTTCTTAATTTGGTACTTAAATTT-ATCA
* *
11047155 TTTTTTCTTAATTTAGTACCTAAATTTAT
1 TTTTTTCTTAATTTGGTACTTAAATTTAT
11047184 TAAATGTTAT
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
30 1 0.02
31 44 0.85
32 7 0.13
ACGTcount: A:0.25, C:0.11, G:0.09, T:0.55
Consensus pattern (31 bp):
TTTTTTCTTAATTTGGTACTTAAATTTATCA
Found at i:11047626 original size:60 final size:57
Alignment explanation
Indices: 11047556--11047726 Score: 200
Period size: 60 Copynumber: 2.9 Consensus size: 57
11047546 ATATCGAATA
* *
11047556 AAAAAAAGTTTAGGTATCAAATTAGGAAAAAGA-GTCAAATTCAGGTACCAAATTGGACTC
1 AAAAAAAGTTTAAGTA-CAAATTAGGAAAAA-ATGTCAAATTCAGGTACCAAATTAGA--C
** * **
11047616 CCAAAAAGTTTAAGTACCAAGTTAGGAAAAAATGTCAAATTTGGGTACCAAATTAGAC
1 AAAAAAAGTTTAAGTA-CAAATTAGGAAAAAATGTCAAATTCAGGTACCAAATTAGAC
* *
11047674 AAAAAAAGTTTAAGTACTAAATTAGGAAAAAATATCAAGTTCAGGTACCAAAT
1 AAAAAAAGTTTAAGTAC-AAATTAGGAAAAAATGTCAAATTCAGGTACCAAAT
11047727 GTTATATTAA
Statistics
Matches: 94, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
57 1 0.01
58 45 0.48
59 1 0.01
60 47 0.50
ACGTcount: A:0.48, C:0.12, G:0.16, T:0.24
Consensus pattern (57 bp):
AAAAAAAGTTTAAGTACAAATTAGGAAAAAATGTCAAATTCAGGTACCAAATTAGAC
Found at i:11047704 original size:27 final size:27
Alignment explanation
Indices: 11047618--11047705 Score: 79
Period size: 27 Copynumber: 3.1 Consensus size: 27
11047608 TTGGACTCCC
*
11047618 AAAAAGTTTAAGTACCAAGTTAGGAAA
1 AAAAAGTTTAAGTACCAAATTAGGAAA
* **
11047645 AAATGTCAAATTTGGGTACCAAATTA-GACAA
1 AAA----AAGTTTAAGTACCAAATTAGGA-AA
*
11047676 AAAAAGTTTAAGTACTAAATTAGGAAA
1 AAAAAGTTTAAGTACCAAATTAGGAAA
11047703 AAA
1 AAA
11047706 TATCAAGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
27 23 0.49
28 2 0.04
30 2 0.04
31 20 0.43
ACGTcount: A:0.52, C:0.08, G:0.16, T:0.24
Consensus pattern (27 bp):
AAAAAGTTTAAGTACCAAATTAGGAAA
Found at i:11047706 original size:58 final size:59
Alignment explanation
Indices: 11047556--11047726 Score: 204
Period size: 58 Copynumber: 2.9 Consensus size: 59
11047546 ATATCGAATA
* *
11047556 AAAAAAAGTTTAGGTA-TCAAATTAGGAAAAAGA-GTCAAATTCAGGTACCAAATTGGACTC
1 AAAAAAAGTTTAAGTACT-AAATTAGGAAAAA-ATGTCAAATTCAGGTACCAAATTAGAC-C
** * * **
11047616 CCAAAAAGTTTAAGTACCAAGTTAGGAAAAAATGTCAAATTTGGGTACCAAATTAGA-C
1 AAAAAAAGTTTAAGTACTAAATTAGGAAAAAATGTCAAATTCAGGTACCAAATTAGACC
* *
11047674 AAAAAAAGTTTAAGTACTAAATTAGGAAAAAATATCAAGTTCAGGTACCAAAT
1 AAAAAAAGTTTAAGTACTAAATTAGGAAAAAATGTCAAATTCAGGTACCAAAT
11047727 GTTATATTAA
Statistics
Matches: 93, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
58 46 0.49
59 1 0.01
60 46 0.49
ACGTcount: A:0.48, C:0.12, G:0.16, T:0.24
Consensus pattern (59 bp):
AAAAAAAGTTTAAGTACTAAATTAGGAAAAAATGTCAAATTCAGGTACCAAATTAGACC
Found at i:11047871 original size:24 final size:24
Alignment explanation
Indices: 11047827--11047872 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
11047817 ATATTTATGT
* *
11047827 TTAATTTAAATTATAATAAATTAG
1 TTAATTAAAAATATAATAAATTAG
11047851 TTAATTAAAAATATTAA-AAATT
1 TTAATTAAAAATA-TAATAAATT
11047873 GTATACAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 16 0.84
25 3 0.16
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (24 bp):
TTAATTAAAAATATAATAAATTAG
Found at i:11048369 original size:22 final size:23
Alignment explanation
Indices: 11048343--11048388 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
11048333 GACTTTGTTA
11048343 TGGGA-TGTTTTATTTTTGCTAT
1 TGGGATTGTTTTATTTTTGCTAT
* *
11048365 TGGGATTGTTTTCTTTTTGTTAT
1 TGGGATTGTTTTATTTTTGCTAT
11048388 T
1 T
11048389 TCTACTAGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.11, C:0.04, G:0.22, T:0.63
Consensus pattern (23 bp):
TGGGATTGTTTTATTTTTGCTAT
Found at i:11050660 original size:49 final size:47
Alignment explanation
Indices: 11050542--11050720 Score: 175
Period size: 47 Copynumber: 3.7 Consensus size: 47
11050532 AGGGTATAAT
* **
11050542 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATAAATCAA
* * *
11050589 GTCGATGCCATGTCCCAAACATGGTCTTACACTGACT-ATTGAAATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCA-T-AAATC-AA
* * **
11050638 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGAACCTC-TATA-CGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT-G-A-CTCATAAATCAA
* *
11050686 GCCGATGCCATGTCCTAGACATTGTCTTACACTGA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA
11050721 AATATCTTGT
Statistics
Matches: 110, Mismatches: 15, Indels: 15
0.79 0.11 0.11
Matches are distributed among these distances:
46 2 0.02
47 36 0.33
48 33 0.30
49 32 0.29
50 3 0.03
51 2 0.02
52 2 0.02
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATAAATCAA
Found at i:11050706 original size:48 final size:47
Alignment explanation
Indices: 11050541--11050719 Score: 170
Period size: 49 Copynumber: 3.7 Consensus size: 47
11050531 TAGGGTATAA
* *
11050541 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGG-CTCATCCATCAAG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGAC-C-TCTAT-ACG
* * *
11050590 T--CGATGCCATGTCCCAAACATGGTCTTACACT-GA-CTATTGAAATCG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGACCT-CT-ATA-CG
* *
11050636 AGGCCGACGCCATGTCCCAGACATGGTCTTACACTGGAACCTCTATACG
1 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTGG-ACCTCTATACG
* *
11050685 TGCCGATGCCATGTCCTAGACATTGTCTTACACTG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTG
11050720 AAATATCTTG
Statistics
Matches: 106, Mismatches: 14, Indels: 21
0.75 0.10 0.15
Matches are distributed among these distances:
44 1 0.01
45 2 0.02
46 3 0.03
47 30 0.28
48 31 0.29
49 32 0.30
50 3 0.03
51 2 0.02
52 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (47 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGACCTCTATACG
Found at i:11050830 original size:46 final size:47
Alignment explanation
Indices: 11050735--11050862 Score: 134
Period size: 46 Copynumber: 2.7 Consensus size: 47
11050725 TCTTGTAGCC
* *
11050735 GATGCATATCCCAAACATGTCTTACCCTGGCT-TACATCTCGAGGCT
1 GATGCATATCCCAAACATGTCTTACACTGGCTCTACATCTCAAGGCT
* * * * * *
11050781 GATGCATCTCCCAAACATGTCTTACACTAGCTCT-CGTTTCAATGTT
1 GATGCATATCCCAAACATGTCTTACACTGGCTCTACATCTCAAGGCT
* *
11050827 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT
1 GATG-CATATCCCAAACAT-GTCTTACACTGGCTCT
11050863 TATAATGTGG
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
46 40 0.59
47 13 0.19
48 15 0.22
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.30
Consensus pattern (47 bp):
GATGCATATCCCAAACATGTCTTACACTGGCTCTACATCTCAAGGCT
Found at i:11053212 original size:46 final size:46
Alignment explanation
Indices: 11053067--11053332 Score: 184
Period size: 46 Copynumber: 5.7 Consensus size: 46
11053057 AGGGTATAAT
* * * *
11053067 GCCGATGCATGTCCTAGACATGGTCTTACACTAGCTCTCACATATCCG-T
1 GCCGATGCATGTCCCAGACAT-GTCTTACACTGGCTCT--CATCT-CGAG
* * * * * *
11053116 GCTGATTCCATGTCCCAGGCATGGTCTTACACT-G-ACACATCTC-ATA
1 GCCGA-TGCATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCGA-G
* *
11053162 GCCGATGCATGTCCCATACATGTCTTACATTGGCT-TACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGAG
* * * * *
11053208 GCCGATGCATGTCCTAGACATGTCTTACAGTAGCTCTCGTCTCGAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAG
* * * *
11053254 GCAGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGAG
* *
11053302 GCCAATGCATGTCCTAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
11053333 AGCACACAAA
Statistics
Matches: 171, Mismatches: 35, Indels: 25
0.74 0.15 0.11
Matches are distributed among these distances:
44 9 0.05
45 15 0.09
46 68 0.40
47 26 0.15
48 23 0.13
49 6 0.04
50 24 0.14
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAG
Found at i:11053282 original size:94 final size:92
Alignment explanation
Indices: 11053165--11053335 Score: 238
Period size: 94 Copynumber: 1.8 Consensus size: 92
11053155 TCTCATAGCC
* * * *
11053165 GATGCATGTCCCATACATGTCTTACATTGGCT-TACAT-CTCGAGGCCGATGCATGTCCTAGACA
1 GATGCATGTCCCAAACATGTCTTACACTGGCTCT-CATAAT-GAGGCCAATGCATGTCCTAGACA
*
11053228 TGTCTTACAGTAGCTCTCGTCTCGATGCA
64 TGTCTTACACTAGCTCTCGTCTCGATGCA
*
11053257 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTGGCCAATGCATGTCCTAGACA
1 GATG-CATGTCCCAAACAT-GTCTTACACTGGCTCTCATAATGAGGCCAATGCATGTCCTAGACA
11053322 TGTCTTACACTAGC
64 TGTCTTACACTAGC
11053336 ACACAAATAA
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
92 4 0.06
93 13 0.19
94 50 0.72
95 2 0.03
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (92 bp):
GATGCATGTCCCAAACATGTCTTACACTGGCTCTCATAATGAGGCCAATGCATGTCCTAGACATG
TCTTACACTAGCTCTCGTCTCGATGCA
Found at i:11053323 original size:140 final size:140
Alignment explanation
Indices: 11053067--11053330 Score: 329
Period size: 140 Copynumber: 1.9 Consensus size: 140
11053057 AGGGTATAAT
* *
11053067 GCCGATGCATGTCCTAGACATGGTCTTACACTAGCTCTCACATATCCGTGCTGATTCCATGTCCC
1 GCCGATGCATGTCCTAGACATGGTCTTACACTAGCTCT-ACATATCCGTGCAGATGCCATGTCCC
** * * *
11053132 AGGCATGGTCTTACACTGACACATCTCATAGCCGATGCATGTCCCATACATGTCTTACATTGGCT
65 AAACATGGTCTTACACTGACACATCTAATAGCCAATGCATGTCCCAGACATGTCTTACATTGGCT
11053197 TACATCTCGAG
130 TACATCTCGAG
* * *
11053208 GCCGATGCATGTCCTAGACAT-GTCTTACAGTAGCTCT-CGTCT-CGATGCAGATGCCATGTCCC
1 GCCGATGCATGTCCTAGACATGGTCTTACACTAGCTCTACATATCCG-TGCAGATGCCATGTCCC
* * * *
11053270 AAACATGGTCTTACACTGGCTC-TCATAATGTGGCCAATGCATGTCCTAGACATGTCTTACA
65 AAACATGGTCTTACACTGACACATC-TAA--TAGCCAATGCATGTCCCAGACATGTCTTACA
11053331 CTAGCACACA
Statistics
Matches: 105, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
137 4 0.04
138 38 0.36
140 42 0.40
141 21 0.20
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (140 bp):
GCCGATGCATGTCCTAGACATGGTCTTACACTAGCTCTACATATCCGTGCAGATGCCATGTCCCA
AACATGGTCTTACACTGACACATCTAATAGCCAATGCATGTCCCAGACATGTCTTACATTGGCTT
ACATCTCGAG
Found at i:11062536 original size:22 final size:20
Alignment explanation
Indices: 11062508--11062554 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 20
11062498 ATATAATTTT
11062508 TTTATAAACTAATATAATATA
1 TTTATAAACTAA-ATAATATA
11062529 CTTTAT-AACTAAATAATATA
1 -TTTATAAACTAAATAATATA
11062549 TTTATA
1 TTTATA
11062555 TAGTTTTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.21
20 8 0.33
21 6 0.25
22 5 0.21
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.45
Consensus pattern (20 bp):
TTTATAAACTAAATAATATA
Found at i:11062546 original size:20 final size:20
Alignment explanation
Indices: 11062496--11062554 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 20
11062486 AATAATGTTA
* *
11062496 TAATATAATTTTTTTATAAAC
1 TAATATAATATATTTAT-AAC
11062517 TAATATAATATACTTTATAAC
1 TAATATAATATA-TTTATAAC
11062538 TAA-ATAATATATTTATA
1 TAATATAATATATTTATA
11062555 TAGTTTTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.17
20 8 0.23
21 16 0.46
22 5 0.14
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (20 bp):
TAATATAATATATTTATAAC
Found at i:11068430 original size:48 final size:48
Alignment explanation
Indices: 11068275--11068731 Score: 299
Period size: 48 Copynumber: 9.7 Consensus size: 48
11068265 TGTGTGTGCT
*
11068275 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCACGA-TATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAAC-ATTATGAGAGCC
* ** * * *** * * *
11068322 AGTGTAACACCATGTCTGAAACATGGCATTGACGTTGA-TATGTGCGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-AACATTATGAGAGCC
*
11068370 AGTGTATA-ACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCC
1 AGTGTA-AGACCATGTCTGGGACATGGCATCGGCAACATTATGAGAGCC
* * * * * ** ** *
11068418 AATGTAATACCATGTTTGGAACATGACATCGGCAATGTTGCGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAACATTATGAGAGCC
* * ** * * * *
11068466 AGTGTAATACCATGTCTGGGACATGGCATCGGTATTGA-TACGTGCGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA-ACATTATGAGAGCC
* *
11068514 AGTGTAAGACCATGTCTGGGACATGGCATTGGCTACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAACATTATGAGAGCC
* * * * ** * *
11068562 AGCGTAAGACCATGTTTGGAACATGGCATCGGTAATGTTGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAACATTATGAGAGCC
* * * * *
11068610 AGTGTAAGACCATGTCAGGGACATGGCAT-TG----A-TATGTGCGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAACATTATGAGAGCC
* ** * * *
11068652 AGTGTAAGACCATGTCTGAGACATGGCATCGGCCTCGA-CACGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAAC-ATTATGAGAGCC
* *
11068700 AGTGTAAGACCATGTTTGGAACATGGCATCGG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG
11068732 TATTTCAGCC
Statistics
Matches: 316, Mismatches: 81, Indels: 25
0.75 0.19 0.06
Matches are distributed among these distances:
42 34 0.11
43 1 0.00
47 25 0.08
48 255 0.81
49 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCAACATTATGAGAGCC
Found at i:11068560 original size:144 final size:142
Alignment explanation
Indices: 11068275--11068731 Score: 552
Period size: 144 Copynumber: 3.2 Consensus size: 142
11068265 TGTGTGTGCT
* * * * * ** *
11068275 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCACGATATGAGAGCCAGTGTAACACCATGTCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTGCGAGAGCTAGTGTAACACCATGTCT
** *
11068339 GAAACATGGCATTGACGTTGATATGTGCGCTAGTGTATA-ACCATGTCTGGGACATGGCATCGGC
66 GGGACATGGCATCGA--TTGATATGTGCGCTAGTGTA-AGACCATGTCTGGGACATGGCATCGGC
*
11068403 CACATTATGAGAGCC
128 TACATTATGAGAGCC
* * * *
11068418 AATGTAATACCATGTTTGGAACATGACATCGGCAATGTTGCGAGAGCTAGTGTAATACCATGTCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTGCGAGAGCTAGTGTAACACCATGTCT
* *
11068483 GGGACATGGCATCGGTATTGATACGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCT
66 GGGACATGGCATC-G-ATTGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCT
11068548 ACATTATGAGAGCC
129 ACATTATGAGAGCC
* * * * *
11068562 AGCGTAAGACCATGTTTGGAACATGGCATCGGTAATGTTGTGAGAGCTAGTGTAAGACCATGTCA
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTGCGAGAGCTAGTGTAACACCATGTCT
*
11068627 GGGACATGG---C-ATTGATATGTGCGCTAGTGTAAGACCATGTCTGAGACATGGCATCGGCCT-
66 GGGACATGGCATCGATTGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTA
* * *
11068687 CGA-CACGTGAGCC
130 C-ATTATGAGAGCC
11068700 AGTGTAAGACCATGTTTGGAACATGGCATCGG
1 AGTGTAAGACCATGTTTGGAACATGGCATCGG
11068732 TATTTCAGCC
Statistics
Matches: 275, Mismatches: 33, Indels: 17
0.85 0.10 0.05
Matches are distributed among these distances:
138 83 0.30
139 3 0.01
141 1 0.00
143 21 0.08
144 165 0.60
145 1 0.00
146 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (142 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTGCGAGAGCTAGTGTAACACCATGTCT
GGGACATGGCATCGATTGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAC
ATTATGAGAGCC
Found at i:11070106 original size:30 final size:30
Alignment explanation
Indices: 11070063--11070121 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
11070053 GGAGGTGGAA
*
11070063 TGGGAAGGAAGTAAAAGTTTTAGAGGGAAAG
1 TGGGAAGGAAGTAAAAATTTT-GAGGGAAAG
* *
11070094 TGGG-AGGGAGTAAAAATTTTGGGGGAAA
1 TGGGAAGGAAGTAAAAATTTTGAGGGAAA
11070122 ATAAAAAGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 7 0.28
30 14 0.56
31 4 0.16
ACGTcount: A:0.39, C:0.00, G:0.41, T:0.20
Consensus pattern (30 bp):
TGGGAAGGAAGTAAAAATTTTGAGGGAAAG
Found at i:11070350 original size:9 final size:9
Alignment explanation
Indices: 11070336--11070372 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
11070326 TATAGTTTGA
11070336 TATTCGAAT
1 TATTCGAAT
11070345 TATTCGAAT
1 TATTCGAAT
*
11070354 TATTCGAGT
1 TATTCGAAT
11070363 TATTCGAAT
1 TATTCGAAT
11070372 T
1 T
11070373 TGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:11072891 original size:22 final size:22
Alignment explanation
Indices: 11072863--11072907 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
11072853 GCATCATCAC
11072863 CAGATGTGATTACGAGTACTTT
1 CAGATGTGATTACGAGTACTTT
11072885 CAGATGTGATTACGAGTACTTT
1 CAGATGTGATTACGAGTACTTT
11072907 C
1 C
11072908 TCTCTTCATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.36
Consensus pattern (22 bp):
CAGATGTGATTACGAGTACTTT
Found at i:11077612 original size:11 final size:11
Alignment explanation
Indices: 11077577--11077625 Score: 55
Period size: 11 Copynumber: 4.4 Consensus size: 11
11077567 CAAATCACTT
11077577 TTCAATTTCAAA
1 TTCAA-TTCAAA
* *
11077589 TTCACTTTAAA
1 TTCAATTCAAA
11077600 TTCAA-TCACAA
1 TTCAATTCA-AA
11077611 TTCAATTCAAA
1 TTCAATTCAAA
11077622 TTCA
1 TTCA
11077626 CTTTTCCACT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
10 2 0.06
11 22 0.71
12 7 0.23
ACGTcount: A:0.41, C:0.20, G:0.00, T:0.39
Consensus pattern (11 bp):
TTCAATTCAAA
Found at i:11078626 original size:16 final size:16
Alignment explanation
Indices: 11078605--11078639 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
11078595 TATTTATTTG
11078605 TAATATAATAATTTTA
1 TAATATAATAATTTTA
**
11078621 TAATATAATTTTTTTA
1 TAATATAATAATTTTA
11078637 TAA
1 TAA
11078640 ATTAATATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TAATATAATAATTTTA
Found at i:11080094 original size:18 final size:18
Alignment explanation
Indices: 11080055--11080093 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
11080045 TAATAGGGGC
*
11080055 AAAA-ATGTAATTTTGCT
1 AAAATATGTAATTGTGCT
11080072 AAAATATGTAAATTGTGCT
1 AAAATATGT-AATTGTGCT
11080091 AAA
1 AAA
11080094 TTGAATGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 4 0.21
18 4 0.21
19 11 0.58
ACGTcount: A:0.46, C:0.05, G:0.13, T:0.36
Consensus pattern (18 bp):
AAAATATGTAATTGTGCT
Found at i:11097244 original size:17 final size:17
Alignment explanation
Indices: 11097222--11097281 Score: 59
Period size: 17 Copynumber: 3.5 Consensus size: 17
11097212 AACTTACCAT
11097222 ACCCAATACCCACATAA
1 ACCCAATACCCACATAA
* * *
11097239 ACCCAA-ACCAAAAATCAT
1 ACCCAATACC-CACAT-AA
*
11097257 ACCCAATACCCACACAA
1 ACCCAATACCCACATAA
11097274 ACCCAATA
1 ACCCAATA
11097282 ACCAAGGTTG
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
16 3 0.09
17 18 0.55
18 9 0.27
19 3 0.09
ACGTcount: A:0.50, C:0.40, G:0.00, T:0.10
Consensus pattern (17 bp):
ACCCAATACCCACATAA
Found at i:11103761 original size:8 final size:8
Alignment explanation
Indices: 11103748--11103776 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
11103738 AAATACCGAT
11103748 TTTCGGCA
1 TTTCGGCA
11103756 TTTCGGCA
1 TTTCGGCA
11103764 TTTCGGCA
1 TTTCGGCA
11103772 TTTCG
1 TTTCG
11103777 ACTTTTGCTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.10, C:0.24, G:0.24, T:0.41
Consensus pattern (8 bp):
TTTCGGCA
Found at i:11104993 original size:26 final size:26
Alignment explanation
Indices: 11104962--11105069 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
11104952 TGAAATGCCC
*
11104962 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
11104988 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
11105014 ATCATAGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
11105040 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
11105066 ATCA
1 ATCA
11105070 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:11106135 original size:13 final size:12
Alignment explanation
Indices: 11106109--11106160 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 12
11106099 ATAGAAGATA
11106109 TTATTTTATTTTAT
1 TTATTTTA--TTAT
11106123 TTAGTTTTATTAT
1 TTA-TTTTATTAT
11106136 TTA-TTT-TTAT
1 TTATTTTATTAT
11106146 TTATTTTTATTAT
1 TTA-TTTTATTAT
11106159 TT
1 TT
11106161 TAGGATTAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
10 7 0.21
11 3 0.09
12 3 0.09
13 13 0.38
14 3 0.09
15 5 0.15
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (12 bp):
TTATTTTATTAT
Found at i:11106136 original size:23 final size:24
Alignment explanation
Indices: 11106107--11106162 Score: 89
Period size: 23 Copynumber: 2.4 Consensus size: 24
11106097 AAATAGAAGA
11106107 TATTATTTTA-TTTTATTTAGTTT
1 TATTATTTTATTTTTATTTAGTTT
*
11106130 TATTA-TTTATTTTTATTTATTTT
1 TATTATTTTATTTTTATTTAGTTT
11106153 TATTATTTTA
1 TATTATTTTA
11106163 GGATTAAGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 4 0.13
23 22 0.73
24 4 0.13
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (24 bp):
TATTATTTTATTTTTATTTAGTTT
Found at i:11121030 original size:201 final size:201
Alignment explanation
Indices: 11120667--11121067 Score: 637
Period size: 201 Copynumber: 2.0 Consensus size: 201
11120657 ACGCCAAATG
*
11120667 ACGTTCGAGCAAAAACTCACAGTTAACAGGTGCAAGATTGACAGGTGTAGAAGCAGGGTTAGCAC
1 ACGTTCAAGCAAAAACTCACAGTTAACAGGTGCAAGATTGACAGGTGTAGAAGCAGGGTTAGCAC
* * * *
11120732 TAGTAATCTGCTGAAACGCTCTAATCATAGCTTCTATAAAGAGGGTCTACACCCTTATTAGGTAT
66 TAGTAATCTACTGAAACGCTCGAATCATAGCTTCTATAAAGAGGGTCTACACCCTCATCAGGTAT
* *
11120797 GTTCACTCTACGCAGCGGCACAAGAGGTGCAAAGAACGTACCATCCTCTTGAGCGCTAGCTCTCG
131 GTTCACTCTACGCAGCGGCACAAGAAGTGCAAAGAACGTACCATCCTCTTGAGCGCTAGCTCTCA
11120862 CATTAC
196 CATTAC
* *
11120868 ACGTTCAAGCAAAAACTCATAGTTAACAGGTGCAAGATTGACAGGTGTAGGAGCAGGGTTAGCAC
1 ACGTTCAAGCAAAAACTCACAGTTAACAGGTGCAAGATTGACAGGTGTAGAAGCAGGGTTAGCAC
*
11120933 TAGTAATCTACTGAAATGCTCGAATCATAGCTTCTATAAAGAGGGTCTACACCCTCATCAGGTAT
66 TAGTAATCTACTGAAACGCTCGAATCATAGCTTCTATAAAGAGGGTCTACACCCTCATCAGGTAT
* * *
11120998 GTTCACTCTACGC-G-GTG-ATATAGAAAGTGCAAAGAATGTACCATCTTCTTGAGCGCTAGCTC
131 GTTCACTCTACGCAGCG-GCACA-AG-AAGTGCAAAGAACGTACCATCCTCTTGAGCGCTAGCTC
11121060 TCACATTA
193 TCACATTA
11121068 ACACATCTAG
Statistics
Matches: 184, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
199 3 0.02
200 4 0.02
201 177 0.96
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (201 bp):
ACGTTCAAGCAAAAACTCACAGTTAACAGGTGCAAGATTGACAGGTGTAGAAGCAGGGTTAGCAC
TAGTAATCTACTGAAACGCTCGAATCATAGCTTCTATAAAGAGGGTCTACACCCTCATCAGGTAT
GTTCACTCTACGCAGCGGCACAAGAAGTGCAAAGAACGTACCATCCTCTTGAGCGCTAGCTCTCA
CATTAC
Found at i:11121525 original size:20 final size:20
Alignment explanation
Indices: 11121500--11121544 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
11121490 TTATCTCGAG
11121500 TAATTATGATTGAAATAAGT
1 TAATTATGATTGAAATAAGT
11121520 TAATTATGATTGAAATAAGT
1 TAATTATGATTGAAATAAGT
*
11121540 GAATT
1 TAATT
11121545 TTACTTAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.44, C:0.00, G:0.16, T:0.40
Consensus pattern (20 bp):
TAATTATGATTGAAATAAGT
Found at i:11124935 original size:21 final size:18
Alignment explanation
Indices: 11124906--11124946 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 18
11124896 AACCGTGACA
11124906 TTACATAATCTGAATGATCT
1 TTACATAATCTG-AT-ATCT
11124926 TTACAATAATCTGATATCT
1 TTAC-ATAATCTGATATCT
11124945 TT
1 TT
11124947 TTCAAAACTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 6 0.30
21 8 0.40
ACGTcount: A:0.34, C:0.15, G:0.07, T:0.44
Consensus pattern (18 bp):
TTACATAATCTGATATCT
Found at i:11129345 original size:23 final size:22
Alignment explanation
Indices: 11129285--11129349 Score: 80
Period size: 23 Copynumber: 3.0 Consensus size: 22
11129275 CCTGATCAAT
11129285 ATACGACACATAAGTGCCTG-A
1 ATACGACACATAAGTGCCTGAA
* *
11129306 A-ACGACACACGAGGTGCCTGAA
1 ATACGACACA-TAAGTGCCTGAA
11129328 ATACGACACATAAAGTGCCTGA
1 ATACGACACAT-AAGTGCCTGA
11129350 TCGGCAAAGC
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
20 8 0.22
21 9 0.25
22 2 0.06
23 17 0.47
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (22 bp):
ATACGACACATAAGTGCCTGAA
Found at i:11129739 original size:13 final size:13
Alignment explanation
Indices: 11129708--11129745 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
11129698 TATTCATAAA
11129708 TTAATTCACTTTAT
1 TTAATTCA-TTTAT
11129722 TTAATTCATATT-T
1 TTAATTCAT-TTAT
11129735 TTAATTCATTT
1 TTAATTCATTT
11129746 TCCAATCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 2 0.09
13 11 0.48
14 10 0.43
ACGTcount: A:0.29, C:0.11, G:0.00, T:0.61
Consensus pattern (13 bp):
TTAATTCATTTAT
Found at i:11131181 original size:5 final size:5
Alignment explanation
Indices: 11131171--11131224 Score: 65
Period size: 5 Copynumber: 11.0 Consensus size: 5
11131161 TATTTATTTC
* * * *
11131171 ATAAT ATAAT ATAAC ATAAT ATAAT ATAAT ATAAT -TATT ATAAT TTAAC
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
11131220 ATAAT
1 ATAAT
11131225 TAAATTTATA
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
4 3 0.08
5 37 0.93
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.41
Consensus pattern (5 bp):
ATAAT
Found at i:11132254 original size:6 final size:6
Alignment explanation
Indices: 11132235--11132275 Score: 57
Period size: 6 Copynumber: 6.8 Consensus size: 6
11132225 TTGTATTTGT
*
11132235 ATCTGG ATAC-GG ATCTGG ATCTAG ATCTGG ATCTGG ATCTG
1 ATCTGG AT-CTGG ATCTGG ATCTGG ATCTGG ATCTGG ATCTG
11132276 TAATTGCATC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 1 0.03
6 29 0.94
7 1 0.03
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (6 bp):
ATCTGG
Found at i:11135399 original size:20 final size:19
Alignment explanation
Indices: 11135362--11135405 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
11135352 CTGTTTTGTT
*
11135362 ATGGGCCAACTGTATTGAA
1 ATGGGCCAACTATATTGAA
* *
11135381 ATGGGCCCAACTATGTTGAT
1 ATGGG-CCAACTATATTGAA
11135401 ATGGG
1 ATGGG
11135406 TTAAGGCCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (19 bp):
ATGGGCCAACTATATTGAA
Found at i:11136315 original size:27 final size:27
Alignment explanation
Indices: 11136249--11136303 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
11136239 ATCAATAAAG
*
11136249 TACATTATTTATTACTTTCATATTTTC
1 TACATTCTTTATTACTTTCATATTTTC
11136276 TACATTCTTTATTACTTTCATATTTTC
1 TACATTCTTTATTACTTTCATATTTTC
11136303 T
1 T
11136304 TTGTTCTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.24, C:0.16, G:0.00, T:0.60
Consensus pattern (27 bp):
TACATTCTTTATTACTTTCATATTTTC
Found at i:11143260 original size:28 final size:27
Alignment explanation
Indices: 11143227--11143279 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
11143217 TTAAAATCTA
*
11143227 AAAAATAAAGAGATTAAATTCCTAAAAT
1 AAAAATAAAGAAATTAAATT-CTAAAAT
* *
11143255 AAAAATCAAGAAATTGAATTCTAAA
1 AAAAATAAAGAAATTAAATTCTAAA
11143280 TTTACGAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 5 0.23
28 17 0.77
ACGTcount: A:0.60, C:0.08, G:0.08, T:0.25
Consensus pattern (27 bp):
AAAAATAAAGAAATTAAATTCTAAAAT
Found at i:11149822 original size:19 final size:19
Alignment explanation
Indices: 11149776--11149822 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
11149766 TTATCATTTA
* *
11149776 AAATTTACTTTTTTCAATT
1 AAATTTATTTTTTTCAAAT
11149795 ACAATTTATTTTTTTCAAAT
1 A-AATTTATTTTTTTCAAAT
11149815 AAATTTAT
1 AAATTTAT
11149823 AATGAAAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 8 0.32
20 17 0.68
ACGTcount: A:0.36, C:0.09, G:0.00, T:0.55
Consensus pattern (19 bp):
AAATTTATTTTTTTCAAAT
Found at i:11152528 original size:32 final size:32
Alignment explanation
Indices: 11152505--11152623 Score: 150
Period size: 32 Copynumber: 3.8 Consensus size: 32
11152495 TAACAAACGT
** *
11152505 CCCATTTTGGTAATTAATATTGTAGCAAACAA
1 CCCATTTCAGTAACTAATATTGTAGCAAACAA
* * *
11152537 CCCATTTCGGTAGCTAATATCGTAGCAAACAA
1 CCCATTTCAGTAACTAATATTGTAGCAAACAA
* * *
11152569 CCCATTTCAGTAATTAATAATGTAGCAAACGA
1 CCCATTTCAGTAACTAATATTGTAGCAAACAA
11152601 CCCATTTCAGTAACTAAT-TTGTA
1 CCCATTTCAGTAACTAATATTGTA
11152624 AGGTAACCCA
Statistics
Matches: 75, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
31 4 0.05
32 71 0.95
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.31
Consensus pattern (32 bp):
CCCATTTCAGTAACTAATATTGTAGCAAACAA
Found at i:11159248 original size:163 final size:161
Alignment explanation
Indices: 11158937--11159265 Score: 559
Period size: 163 Copynumber: 2.0 Consensus size: 161
11158927 GATGACCATT
* * * *
11158937 TAAGGAACATGCAAGACCATGGATATATAGTGGTTCCTTGTCCTAAAAGTAGCATATGAAATAAG
1 TAAGGAACATGCAAGACCATAGATATATACTAGTTCATTGTCCTAAAAGTAGCATATGAAATAAG
* *
11159002 CATTTATCTTTATGTGATTCCATCATCTGAAAACATGATAAGCCATTCAACATAACACTAGGATG
66 CATCTATCTTTATGTGATTCCATCATCTGAAAACATGATAAGCCACTCAACATAACACTAGGATG
11159067 TTAAGATTAGGTGCTAATTGATAATTGAGTG
131 TTAAGATTAGGTGCTAATTGATAATTGAGTG
*
11159098 TAAGGAACATGCAAGACCATAGATATATACTAGTTCATTGTCCTACAAGTAGCATATGAAATAAG
1 TAAGGAACATGCAAGACCATAGATATATACTAGTTCATTGTCCTAAAAGTAGCATATGAAATAAG
* *
11159163 CATCTATCTTTATATGTGATTCCATCATCTGAAAACATGATAAGCCACTCAGCTTAACACTAGGA
66 CATCTATC-TT-TATGTGATTCCATCATCTGAAAACATGATAAGCCACTCAACATAACACTAGGA
11159228 TGTTAAGATTAGGTGCTAATTGATAATTGAGTG
129 TGTTAAGATTAGGTGCTAATTGATAATTGAGTG
11159261 TAAGG
1 TAAGG
11159266 TGATAATCTT
Statistics
Matches: 157, Mismatches: 9, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
161 67 0.43
162 2 0.01
163 88 0.56
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (161 bp):
TAAGGAACATGCAAGACCATAGATATATACTAGTTCATTGTCCTAAAAGTAGCATATGAAATAAG
CATCTATCTTTATGTGATTCCATCATCTGAAAACATGATAAGCCACTCAACATAACACTAGGATG
TTAAGATTAGGTGCTAATTGATAATTGAGTG
Found at i:11167928 original size:483 final size:483
Alignment explanation
Indices: 11167022--11167991 Score: 1620
Period size: 483 Copynumber: 2.0 Consensus size: 483
11167012 CACAACTTCA
*
11167022 TGCAGTTGGGTTCTCTCCTCTTGAGTTGCACTGAGCAGCTGCCCTGCTTCCAGAAGCTCATTCTC
1 TGCAGTTGGGTTCTCTCCTCTTGAGTTGCACTGAGCAGCTGCCCTGCTTCCAAAAGCTCATTCTC
* * * * *
11167087 CTTCTGGCATAGTAGATCCTTTCCCTTCACGACTTCGTCATTTAACTGATTGCAAACAGATTTAA
66 CTTCAGGCATAATAGATCCTTTCCCTTCACAACTTCATCATTTAACTGATTGCAAACAGATCTAA
* *
11167152 CTGAAACTAGCTCATTCTCCAAGTTCTGCACCTTATCCTTGAGATGTGAGTTTACCATTTGCGTT
131 CTGAAACTAGCCCATTCTCCAAGTTCTGCACCTTATCCTTGAGATGTAAGTTTACCATTTGCGTT
11167217 TCTTCAAACTTGATCCCCATTATCCTCAGTTTTCCCTCAAGATCATCATTGAAACATTTGAGTTT
196 TCTTCAAACTTGATCCCCATTATCCTCAGTTTTCCCTCAAGATCATCATTGAAACATTTGAGTTT
11167282 ATCCAGATTGGCCATGAGATGCTTTATTTCAACAAAATTATCAGTAATAATGTCCTTGAGAATAA
261 ATCCAGATTGGCCATGAGATGCTTTATTTCAACAAAATTATCAGTAATAATGTCCTTGAGAATAA
* * *
11167347 GCGAAATGTTACTTTGAGATACTGCTTCAGCAAAGACAGCGCAGTTTTCCTCTTCTAGATTGTGT
326 GAGAAATGTTACTTTGAGATACTGCTTCAGCAAAGACAGCACAATTTTCCTCTTCTAGATTGTGT
*
11167412 TTCTCCTTGCCCAAGTCTGAAACAAACTTCATCAAAGTCCTTTTCTCATCTAGCACCTTGTGGTT
391 TTCTCCTTGCCCAAATCTGAAACAAACTTCATCAAAGTCCTTTTCTCATCTAGCACCTTGTGGTT
11167477 CTCTTCAACTGAACTTTGATATGCCCTT
456 CTCTTCAACTGAACTTTGATATGCCCTT
* * * * *
11167505 TGCAGTTGGTTTCTCTCCTCTTGAGTTGCACTGAGCATCTTCTCTGCTTCCAAAAGCTCCTTCTC
1 TGCAGTTGGGTTCTCTCCTCTTGAGTTGCACTGAGCAGCTGCCCTGCTTCCAAAAGCTCATTCTC
11167570 CTTCAGGCATAATAGATCCTTTCCCTTCACAACTTCATCATTTAACTGATTGCAAACAGATCTAA
66 CTTCAGGCATAATAGATCCTTTCCCTTCACAACTTCATCATTTAACTGATTGCAAACAGATCTAA
*
11167635 CTGAAACTAGCCCATTCTCCAAGTTCTGCA-CTGTATCCTTGAGATGTAAGTTTACCATTTGTGT
131 CTGAAACTAGCCCATTCTCCAAGTTCTGCACCT-TATCCTTGAGATGTAAGTTTACCATTTGCGT
* * **
11167699 TTCTTCAAGCTTGATCTCCATTATCCTCAGTTTTCCCTCAAGATTGTCATTGAAACATTTGAGTT
195 TTCTTCAAACTTGATCCCCATTATCCTCAGTTTTCCCTCAAGATCATCATTGAAACATTTGAGTT
* *
11167764 TATCCAGATTGG-CACTGAGATGCTTTATTTCCACAAAATTATCAGTAATAATGTTCTTGAGAAT
260 TATCCAGATTGGCCA-TGAGATGCTTTATTTCAACAAAATTATCAGTAATAATGTCCTTGAGAAT
* * *
11167828 AAGAGCAATGTTACTTTGAGATATTGCTTCGGCAAAGACAGCACAATTTTCCTCTTCTAGATTGT
324 AAGAGAAATGTTACTTTGAGATACTGCTTCAGCAAAGACAGCACAATTTTCCTCTTCTAGATTGT
*** *
11167893 GTTTCTCCTTGCCCAAATCTGAAACTTCCTTCATCAAAGTCCTTTTCTCGTCTAGCACCTTGTGG
389 GTTTCTCCTTGCCCAAATCTGAAACAAACTTCATCAAAGTCCTTTTCTCATCTAGCACCTTGTGG
*
11167958 TTCTCTTCAATTGAACTTTGATATGCCCTT
454 TTCTCTTCAACTGAACTTTGATATGCCCTT
11167988 TGCA
1 TGCA
11167992 ACTCTGATAG
Statistics
Matches: 453, Mismatches: 32, Indels: 4
0.93 0.07 0.01
Matches are distributed among these distances:
482 4 0.01
483 449 0.99
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.36
Consensus pattern (483 bp):
TGCAGTTGGGTTCTCTCCTCTTGAGTTGCACTGAGCAGCTGCCCTGCTTCCAAAAGCTCATTCTC
CTTCAGGCATAATAGATCCTTTCCCTTCACAACTTCATCATTTAACTGATTGCAAACAGATCTAA
CTGAAACTAGCCCATTCTCCAAGTTCTGCACCTTATCCTTGAGATGTAAGTTTACCATTTGCGTT
TCTTCAAACTTGATCCCCATTATCCTCAGTTTTCCCTCAAGATCATCATTGAAACATTTGAGTTT
ATCCAGATTGGCCATGAGATGCTTTATTTCAACAAAATTATCAGTAATAATGTCCTTGAGAATAA
GAGAAATGTTACTTTGAGATACTGCTTCAGCAAAGACAGCACAATTTTCCTCTTCTAGATTGTGT
TTCTCCTTGCCCAAATCTGAAACAAACTTCATCAAAGTCCTTTTCTCATCTAGCACCTTGTGGTT
CTCTTCAACTGAACTTTGATATGCCCTT
Found at i:11170308 original size:855 final size:847
Alignment explanation
Indices: 11168651--11171575 Score: 3278
Period size: 855 Copynumber: 3.3 Consensus size: 847
11168641 CAGACTTTCT
* * * *
11168651 CCTTGTAGGAAATGGATCTGAGATTCCATAGAAGTAGCCCTGGTTTCATTCAACTTCACAAAACT
1 CCTTGTAGAAAATGGATCTGAGATTCCATAGAAGTAACTCGGGTTTCATTCAACTTCACAAAACT
* **
11168716 AGCATGTTGC-TGCTTTTCAGCATCTAATGACCTTTGTAG-TTCTTCTACTTCATGAAGCATTGA
66 AGCATGTT-CTTGCTTTTCAGCATCTAATGACTTTTGTAGCTT-TTCTACTTCATGAAGTGTTGA
* *
11168779 TTCTCTCTCTTTCTCCAGGA-CCTCATACTTTTCTTCTAATCCCTGATATCTATTTTCCAAATCT
129 TTCTCTCTCTTTCTCCA-GACCCACATATTTTTCTTCTAATCCCTGATATCT-TTTTCCAAATCT
* * *
11168843 TCCATCCTTTTCTGACTGATATTCAACTCAGAAATCAAACCTTCTCTCTGTGTTAGCAAACCAGA
192 TCCAGCCTTTTCTGACTGACATTCAACTCAG-AATCAAACCTTCTCTCTGTGTTAGCAGACCAGA
* *
11168908 CTTCTCATCACCAAGCAGCTGGTATGAAATTTCTAAGCTCTTTAATTTTGTAC-TCAATCCTTCA
256 CTTCTCATCACCAAGCAGCTGGTATGAAATTTCTAAGCTCTTTAATTTT-TCCTTCAAACCTTCA
* * * * *
11168972 ACTTCAGCATTTGCATCACAAAGATAATTCTTCACTTCTGAAAACTGCTCAGACTGAACCTTCAA
320 GCTTCAGCATTTGCATCACAAAGATGATTCTCCACTTCTGAAAATTGCTCGGACTGAACCTTCAA
*
11169037 TTCCTGATGCAGTGAGTTATTTTCTGTTGCAAGATTTTCAGCCTCTAGCTTCAGTTGCCCAAGCA
385 CTCCTGATGCAGTGAGTTATTTTCTGTTGCAAGATTTTCAGCCTCTAG-TTCAGTTGCCCAAGCA
* *
11169102 ATCCAATAAGAACTGAATTCTCAATTATGATTTGCTGATTTTCATCCAGAGACTTCAAAAGTGAA
449 ATCCAATAAGAACTGAATTCTCAATTATGAATTGCTGATTTTCATCCAGAGACTT-TAAAGTGAA
* * *
11169167 TTTTGCATCTTTTGGAGTCTGCCAAATATACAGTCAAGAACTGATTGGTCTTGTTTGATCATGTC
513 TTTTGCATCTTTTGGAGCCTGCCAAATATACAGTCAAGAACTGATTGGTCTTGTTTGAT-TTATC
* * *
11169232 ATCATAACTATGGATAGCATCAATCCCAAGAGTCCTCAACATCTGATTAAGCCCCATCCTCAATA
577 ATCATAACCATGGATA-CATCAATACCAAGAGTCCTCAACATCTGA-TAAGCCCCATCCTCAGTA
* *
11169297 TGGTAATTAGATCAAATAAGGATTTTATCTCCATCTGTTTTCTGGAATTTCCTAGCTCCAATTCA
640 TAGTAATTAGATCAAATAAGGATTTTATCTCCATCTGTTTT-TGGAATTTCCAAGCTCCAATTCA
* * ** * *
11169362 GAGATAAGTATTTCA-GACAATTTCAACGCTTCCAAGAGCTTCCTACACTCAAGCAATAGGGATA
704 GAGATAAGT-TTTTAGGA-AAATTGGAGGCTTCCAAGAGTTTCCTACACTCAAGCAATAGGGATA
* * *
11169426 AATTATTCTCTTCCAGATCTCGTGCACATCTCTGCAAAACGAAGGTTTCTACATGAGCATCCATG
767 AATTCTTCTCTTCCAGATCTTGTGCACATCTCTGCAAAATGAAGGTTTCTACATGAGCATCCATG
11169491 G-CCTTGTCAAGTTCC
832 GTCCTTGTCAAGTTCC
*
11169506 CCTTGTAGAAAATGGATCTGAGATACCATAGAAGTAACTCGGGTTTCATTCAACTTCACAAAACT
1 CCTTGTAGAAAATGGATCTGAGATTCCATAGAAGTAACTCGGGTTTCATTCAACTTCACAAAACT
* * * * * *
11169571 AGCATGTTCTTCCATTTCAGCATCCAATGACTTTTGTAGCTTTTGTACTCCATGAAGTGCTGATT
66 AGCATGTTCTTGCTTTTCAGCATCTAATGACTTTTGTAGCTTTTCTACTTCATGAAGTGTTGATT
* * *
11169636 CTCTCTCTTTCTCCAAACCCACATATTTTTCTTCTAATTCCTGATATCGTTTTTCCAAATCTTTC
131 CTCTCTCTTTCTCCAGACCCACATATTTTTCTTCTAATCCCTGATATC-TTTTTCCAAATCTTCC
* *
11169701 AGCCTTTTCTGGCTGACATTCAACTCAGAAGTCAAACCTTCTCTCTGTGTTAGCAGACCAAACTT
195 AGCCTTTTCTGACTGACATTCAACTCAGAA-TCAAACCTTCTCTCTGTGTTAGCAGACCAGACTT
11169766 CTCATCACCAAGCAGCTGGTATGAAATTTCTAAGCTCTTTAATTTTTCCTTCAAACCTTCAGCTT
259 CTCATCACCAAGCAGCTGGTATGAAATTTCTAAGCTCTTTAATTTTTCCTTCAAACCTTCAGCTT
*
11169831 CAGCATTTGCATCACAAAGATGATTCTCCACTTCTGAAAATTGCTCGGACTGAACCTTCAGCTCC
324 CAGCATTTGCATCACAAAGATGATTCTCCACTTCTGAAAATTGCTCGGACTGAACCTTCAACTCC
*
11169896 TGATGCAGTGAATTATTTTCTGTTGCAAGATTTTCAGCCTCTAGTTCCAGTTGCCCAAGCAATCC
389 TGATGCAGTGAGTTATTTTCTGTTGCAAGATTTTCAGCCTCTAGTT-CAGTTGCCCAAGCAATCC
* *
11169961 AATAAGAACTGAATTCTCAATTATGAACTGCTGATTTTCGTCCAGAGACTTTAGAAGTGAATTTT
453 AATAAGAACTGAATTCTCAATTATGAATTGCTGATTTTCATCCAGAGACTTTA-AAGTGAATTTT
** * *
11170026 GCATCTTTTGGAGCCTGCCTGATATACAGTCAAGTACTGATTGATCTTGTTTGATTGTATCATCA
517 GCATCTTTTGGAGCCTGCCAAATATACAGTCAAGAACTGATTGGTCTTGTTTGATT-TATCATCA
* * *
11170091 TAACCACGGATACCATCAAAACCAAGAGTCCTCAACATCTGATAGAGCCCCATCCTCAGTAAAGT
581 TAACCATGGATA-CATCAATACCAAGAGTCCTCAACATCTGATA-AGCCCCATCCTCAGTATAGT
* * * * * *
11170156 GATTTGATCAGATAAGGATTCTATCTCCACCTGTTTTTGGGAATTTCCAAGCTCCAACTCAGAGA
644 AATTAGATCAAATAAGGATTTTATCTCCATCTGTTTTT-GGAATTTCCAAGCTCCAATTCAGAGA
* * * *
11170221 TAAGTTTTTTGGATAATCTGGAGGCTTCCAAGAGTTTGCTACACTCACGCAATAGGGATAAATTC
708 TAAGTTTTTAGGAAAAT-TGGAGGCTTCCAAGAGTTTCCTACACTCAAGCAATAGGGATAAATTC
* * *
11170286 TTCACTTCGAGATCTTGTGCACATCTCTGCAAAATGAAGGTTTCTACATGAGCATTCATGGCCTT
772 TTCTCTTCCAGATCTTGTGCACATCTCTGCAAAATGAAGGTTTCTACATGAG----CAT--CCAT
*
11170351 GTCCAGTTCCTTCTCGTATTCTTTCTTCCTGCATAGACTTTCT
831 G----G-TCC-T-T-G-------------T-CA-AG---TTCC
* * ** * *
11170394 CCTTGTAGAAAATGGATTTGAGATTCCATAGAAGTGACTCGGACTTCATTCGACTTCACAAATCT
1 CCTTGTAGAAAATGGATCTGAGATTCCATAGAAGTAACTCGGGTTTCATTCAACTTCACAAAACT
* * * **
11170459 AGCATGTTCTTGCTTTTCCGCATCTAGTGACTTTTGTAGCTCTTCTACTTCACAAAGTGTTGATT
66 AGCATGTTCTTGCTTTTCAGCATCTAATGACTTTTGTAGCTTTTCTACTTCATGAAGTGTTGATT
* * *
11170524 CTCTCACTTTCTCCAGACCCACATATTTTTCCTCTAATCCCTGATATCTTTCCTCCAAATCTTCC
131 CTCTCTCTTTCTCCAGACCCACATATTTTTCTTCTAATCCCTGATATCTTT-TTCCAAATCTTCC
*
11170589 AGCCTTTTCTGACTGACATTCAACTCAGATATCAAACCTTCTCTCTGTGTTAGCAGGCCAGACTT
195 AGCCTTTTCTGACTGACATTCAACTCAGA-ATCAAACCTTCTCTCTGTGTTAGCAGACCAGACTT
* * * * ** * * *
11170654 CTCTTCACCAAGCAGCAGGCATGAACTTTCTAAGCTC-TTAAGTTTCGCTCTTGATA-TTTCAAG
259 CTCATCACCAAGCAGCTGGTATGAAATTTCTAAGCTCTTTAA-TTTTTC-CTTCAAACCTTC-AG
* * * * * * * *
11170717 -TTCAGCATTTGTATTAAAAAG-GGAAGTCTCCAATTCTGAGAACTT-CTCGAACTGAACCTTCA
321 CTTCAGCATTTGCATCACAAAGATG-ATTCTCCACTTCTGA-AAATTGCTCGGACTGAACCTTCA
* * * * * *
11170779 ACTCCTGGTGCAGTGAGTTCTTCTCTGTGGCAAGATTTTCTGCCTCAAGTTTCAGTTGCCCAAGC
384 ACTCCTGATGCAGTGAGTTATTTTCTGTTGCAAGATTTTCAGCCTCTAG-TTCAGTTGCCCAAGC
*
11170844 AATCCAATAAGAACTGAATTCTCAATTATGAATTGCTGATTATCATCCAGAGACTTTAAATGTGA
448 AATCCAATAAGAACTGAATTCTCAATTATGAATTGCTGATTTTCATCCAGAGACTTTAAA-GTGA
* * * *
11170909 GTTCTT-CATCTTTTGGATCCCT-CCAAATATACAGTCAAGGACTAATTGGTCTTGTTTGATCTT
512 ATT-TTGCATCTTTTGGA-GCCTGCCAAATATACAGTCAAGAACTGATTGGTCTTGTTTGAT-TT
** * *
11170972 ATCATCATAACCATGG--ACATCAATTTCAAGAG-CCTTCAGCATTTGATAAAGCCCCATCCTCA
574 ATCATCATAACCATGGATACATCAATACCAAGAGTCC-TCAACATCTGAT-AAGCCCCATCCTCA
* * **
11171034 GTATAGTAATTCGATCAAATAAGGATTTTATCTCCATCTCTTTTTTGGAATTTCTGAGCTCCAAT
637 GTATAGTAATTAGATCAAATAAGGATTTTATCTCCATCT-GTTTTTGGAATTTCCAAGCTCCAAT
* * *
11171099 TCAGAGATAAGTTTTTCAGAAAAATTGGAGGCTTCCAGGAGTTTCCTACACTCAAACAATAGGGA
701 TCAGAGATAAGTTTTT-AGGAAAATTGGAGGCTTCCAAGAGTTTCCTACACTCAAGCAATAGGGA
* * *
11171164 TAAATTCTTCTCTTCCATATCTTGTGCACATTTCTGCAAGATGAAGGTTTCTACATGAGCATTCA
765 TAAATTCTTCTCTTCCAGATCTTGTGCACATCTCTGCAAAATGAAGGTTTCTACATGAGCA-TC-
* *
11171229 TGGACCTGTCCAGTTCCTCTTCATATTCTTTCTTTCTGCACAGACTTTCC
828 ----CATG----G-------------TC---C-TTGT-CA-AG---TTCC
* * **
11171279 CCTTGTAGAAAACT-GATCTGAGATTCCATAGCAGTAACTCGGGTTTCATTCAACTGCATGAAAC
1 CCTTGTAGAAAA-TGGATCTGAGATTCCATAGAAGTAACTCGGGTTTCATTCAACTTCACAAAAC
* * * * *
11171343 TGGCATATTCTTGCTTTTCCA-CATCTAGTGACTTTTGTAGCTCTTCTACTTCACT-AAGTGTTA
65 TAGCATGTTCTTGCTTTT-CAGCATCTAATGACTTTTGTAGCTTTTCTACTTCA-TGAAGTGTTG
* ** * *
11171406 ATTCTCTCTCTTTCTCCAGGCCCATGTATTTTTCTTCTAAACCCTGATATCTTTTTTCCGAATCT
128 ATTCTCTCTCTTTCTCCAGACCCACATATTTTTCTTCTAATCCCTGATATC-TTTTTCCAAATCT
* * * * * * * * **
11171471 TCCAACCTTTCCTGACTGATACTCAACTCAGAAATCAAGCCTTCTCTTTGTCTTATCAGGGCAGA
192 TCCAGCCTTTTCTGACTGACATTCAACTCAG-AATCAAACCTTCTCTCTGTGTTAGCAGACCAGA
* * **
11171536 CTTCTCATCACCAAGCAGCAGGCATGAGTTTTCTAAGCTC
256 CTTCTCATCACCAAGCAGCTGGTATGAAATTTCTAAGCTC
11171576 ATTACCTTTA
Statistics
Matches: 1776, Mismatches: 206, Indels: 146
0.83 0.10 0.07
Matches are distributed among these distances:
854 17 0.01
855 724 0.41
856 3 0.00
859 3 0.00
861 4 0.00
865 1 0.00
867 2 0.00
868 1 0.00
869 1 0.00
870 1 0.00
880 1 0.00
881 2 0.00
882 1 0.00
883 1 0.00
884 4 0.00
885 463 0.26
886 18 0.01
887 10 0.01
888 492 0.28
889 20 0.01
897 3 0.00
899 1 0.00
900 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.35
Consensus pattern (847 bp):
CCTTGTAGAAAATGGATCTGAGATTCCATAGAAGTAACTCGGGTTTCATTCAACTTCACAAAACT
AGCATGTTCTTGCTTTTCAGCATCTAATGACTTTTGTAGCTTTTCTACTTCATGAAGTGTTGATT
CTCTCTCTTTCTCCAGACCCACATATTTTTCTTCTAATCCCTGATATCTTTTTCCAAATCTTCCA
GCCTTTTCTGACTGACATTCAACTCAGAATCAAACCTTCTCTCTGTGTTAGCAGACCAGACTTCT
CATCACCAAGCAGCTGGTATGAAATTTCTAAGCTCTTTAATTTTTCCTTCAAACCTTCAGCTTCA
GCATTTGCATCACAAAGATGATTCTCCACTTCTGAAAATTGCTCGGACTGAACCTTCAACTCCTG
ATGCAGTGAGTTATTTTCTGTTGCAAGATTTTCAGCCTCTAGTTCAGTTGCCCAAGCAATCCAAT
AAGAACTGAATTCTCAATTATGAATTGCTGATTTTCATCCAGAGACTTTAAAGTGAATTTTGCAT
CTTTTGGAGCCTGCCAAATATACAGTCAAGAACTGATTGGTCTTGTTTGATTTATCATCATAACC
ATGGATACATCAATACCAAGAGTCCTCAACATCTGATAAGCCCCATCCTCAGTATAGTAATTAGA
TCAAATAAGGATTTTATCTCCATCTGTTTTTGGAATTTCCAAGCTCCAATTCAGAGATAAGTTTT
TAGGAAAATTGGAGGCTTCCAAGAGTTTCCTACACTCAAGCAATAGGGATAAATTCTTCTCTTCC
AGATCTTGTGCACATCTCTGCAAAATGAAGGTTTCTACATGAGCATCCATGGTCCTTGTCAAGTT
CC
Found at i:11171623 original size:885 final size:884
Alignment explanation
Indices: 11169502--11171633 Score: 2784
Period size: 885 Copynumber: 2.4 Consensus size: 884
11169492 CCTTGTCAAG
*
11169502 TTCCCCTTGTAGAAAATGGATCTGAGATACCATAGAAGTAACTCGGGTTTCATTCAACTTCACAA
1 TTCCCCTTGTAGAAAATGGATCTGAGATTCCATAGAAGTAACTCGGGTTTCATTCAACTTCA-AA
* * * * * * *
11169567 AACTAGCATGTTCTTCCATTT-CAGCATCCAATGACTTTTGTAGCTTTTGTACTCCA-TGAAGTG
65 AACTAGCATGTTCTTGCTTTTCCA-CATCTAGTGACTTTTGTAGCTCTTCTACTTCACT-AAGTG
* * * *
11169630 CTGATTCTCTCTCTTTCTCCAAACCCACATATTTTTCTTCTAATTCCTGATATCGTTTTTCCAAA
128 TTGATTCTCTCTCTTTCTCCAGACCCACATATTTTTCTTCTAATCCCTGATATCTTTTTTCCAAA
* * * *
11169695 TCTTTCAGCCTTTTCTGGCTGACATTCAACTCAGAAGTCAAACCTTCTCTCTGTGTTAGCAGACC
193 TCTTCCAGCCTTTTCTGACTGACATTCAACTCAGAAATCAAACCTTCTCTCTGTGTTAGCAGGCC
* * * * * *
11169760 AAACTTCTCATCACCAAGCAGCTGGTATGAAATTTCTAAGCTCTTTAATTTTTCCTTCAAACCTT
258 AGACTTCTCATCACCAAGCAGCAGGCATGAAATTTCTAAGCTC-TTAA-CTTTCCCTCAATCCTT
* * * *
11169825 C-AGCTTCAGCATTTGCATCACAAAGATG-ATTCTCCACTTCTGAAAATTGCTCGGACTGAACCT
321 CAAG-TTCAGCATTTGCATCAAAAAG-GGAATTCTCCAATTCTGAAAATTGCTCGAACTGAACCT
* * * *
11169888 TCAGCTCCTGATGCAGTGAATTATTTTCTGTTGCAAGATTTTCAGCCTCTAGTTCCAGTTGCCCA
384 TCAACTCCTGATGCAGTGAATTATTCTCTGTGGCAAGATTTTCAGCCTCAAGTTCCAGTTGCCCA
* *
11169953 AGCAATCCAATAAGAACTGAATTCTCAATTATGAACTGCTGATTTTCGTCCAGAGACTTTAGAAG
449 AGCAATCCAATAAGAACTGAATTCTCAATTATGAACTGCTGATTATCATCCAGAGACTTTAGAAG
* ** * *
11170018 TGAATTTTGCATCTTTTGGAGCCTGCCTGATATACAGTCAAGTACTGATTGATCTTGTTTGATTG
514 TGAATTTTGCATCTTTTGGACCCTGCCAAATATACAGTCAAGGACTAATTGATCTTGTTTGATTG
*
11170083 TATCATCATAACCACGGATACCATCAAAACCAAGAGTCCTCAACATCTGATAGAGCCCCATCCTC
579 TATCATCATAACCACGGA-ACCATCAAAACCAAGAGTCCTCAACATCTGATAAAGCCCCATCCTC
* * * *
11170148 AGTAAAGTGATTTGATCAGATAAGGATTCTATCTCCACCTGTTTTTGGGAATTTCCAAGCTCCAA
643 AGTAAAGTAATTCGATCAAATAAGGATTCTATCTCCACCTCTTTTTGGGAATTTCCAAGCTCCAA
* * * * **
11170213 CTCAGAGATAAGTTTTTTGGATAATCTGGAGGCTTCCAAGAGTTTGCTACACTCACGCAATAGGG
708 CTCAGAGATAAGTTTTTAGAAAAATCTGGAGGCTTCCAAGAGTTTCCTACACTCAAACAATAGGG
*
11170278 ATAAATTCTTCACTTCGAGATCTTGTGCACATCTCTGCAAAATGAAGGTTTCTACATGAGCATTC
773 ATAAATTCTTCACTTCCAGATCTTGTGCACATCTCTGCAAAATGAAGGTTTCTACATGAGCATTC
* *
11170343 ATGGCCTTGTCCAGTTCCTTCTCGTATTCTTTCTTCCTGCATAGACT
838 ATGGCCTTGTCCAGTTCCTTCTCATATTCTTTCTTCCTGCACAGACT
* * * ** *
11170390 TTCTCCTTGTAGAAAATGGATTTGAGATTCCATAGAAGTGACTCGGACTTCATTCGACTTCACAA
1 TTCCCCTTGTAGAAAATGGATCTGAGATTCCATAGAAGTAACTCGGGTTTCATTCAACTTCA-AA
* * *
11170455 ATCTAGCATGTTCTTGCTTTTCCGCATCTAGTGACTTTTGTAGCTCTTCTACTTCACAAAGTGTT
65 AACTAGCATGTTCTTGCTTTTCCACATCTAGTGACTTTTGTAGCTCTTCTACTTCACTAAGTGTT
* * **
11170520 GATTCTCTCACTTTCTCCAGACCCACATATTTTTCCTCTAATCCCTGATATCTTTCCTCCAAATC
130 GATTCTCTCTCTTTCTCCAGACCCACATATTTTTCTTCTAATCCCTGATATCTTTTTTCCAAATC
*
11170585 TTCCAGCCTTTTCTGACTGACATTCAACTCAGATATCAAACCTTCTCTCTGTGTTAGCAGGCCAG
195 TTCCAGCCTTTTCTGACTGACATTCAACTCAGAAATCAAACCTTCTCTCTGTGTTAGCAGGCCAG
* * * ** **
11170650 ACTTCTCTTCACCAAGCAGCAGGCATGAACTTTCTAAGCTCTTAAGTTTCGCTCTTGATATTTCA
260 ACTTCTCATCACCAAGCAGCAGGCATGAAATTTCTAAGCTCTTAACTTTC-C-CTCAATCCTTCA
* * * *
11170715 AGTTCAGCATTTGTATTAAAAAGGGAAGTCTCCAATTCTGAGAACTT-CTCGAACTGAACCTTCA
323 AGTTCAGCATTTGCATCAAAAAGGGAATTCTCCAATTCTGA-AAATTGCTCGAACTGAACCTTCA
* * * * *
11170779 ACTCCTGGTGCAGTGAGTTCTTCTCTGTGGCAAGATTTTCTGCCTCAAGTTTCAGTTGCCCAAGC
387 ACTCCTGATGCAGTGAATTATTCTCTGTGGCAAGATTTTCAGCCTCAAGTTCCAGTTGCCCAAGC
*
11170844 AATCCAATAAGAACTGAATTCTCAATTATGAATTGCTGATTATCATCCAGAGACTTTA-AATGTG
452 AATCCAATAAGAACTGAATTCTCAATTATGAACTGCTGATTATCATCCAGAGACTTTAGAA-GTG
* *
11170908 AGTTCTT-CATCTTTTGGATCCCT-CCAAATATACAGTCAAGGACTAATTGGTCTTGTTTGATCT
516 AATT-TTGCATCTTTTGGA-CCCTGCCAAATATACAGTCAAGGACTAATTGATCTTGTTTGAT-T
* *** * *
11170971 -TATCATCATAACCATGG-A-CATCAATTTCAAGAG-CCTTCAGCATTTGATAAAGCCCCATCCT
578 GTATCATCATAACCACGGAACCATCAAAACCAAGAGTCC-TCAACATCTGATAAAGCCCCATCCT
* * * * **
11171032 CAGTATAGTAATTCGATCAAATAAGGATTTTATCTCCATCTCTTTTTTGGAATTTCTGAGCTCCA
642 CAGTAAAGTAATTCGATCAAATAAGGATTCTATCTCCACCTCTTTTTGGGAATTTCCAAGCTCCA
* *
11171097 ATTCAGAGATAAGTTTTTCAGAAAAAT-TGGAGGCTTCCAGGAGTTTCCTACACTCAAACAATAG
707 ACTCAGAGATAAGTTTTT-AGAAAAATCTGGAGGCTTCCAAGAGTTTCCTACACTCAAACAATAG
* * * *
11171161 GGATAAATTCTTCTCTTCCATATCTTGTGCACATTTCTGCAAGATGAAGGTTTCTACATGAGCAT
771 GGATAAATTCTTCACTTCCAGATCTTGTGCACATCTCTGCAAAATGAAGGTTTCTACATGAGCAT
*
11171226 TCATGGACC-TGTCCAGTTCC-TCTTCATATTCTTTCTTTCTGCACAGACT
836 TCATGG-CCTTGTCCAGTTCCTTC-TCATATTCTTTCTTCCTGCACAGACT
* * *
11171275 TTCCCCTTGTAGAAAACT-GATCTGAGATTCCATAGCAGTAACTCGGGTTTCATTCAACTGCATG
1 TTCCCCTTGTAGAAAA-TGGATCTGAGATTCCATAGAAGTAACTCGGGTTTCATTCAACTTCA-A
* *
11171339 AAACTGGCATATTCTTGCTTTTCCACATCTAGTGACTTTTGTAGCTCTTCTACTTCACTAAGTGT
64 AAACTAGCATGTTCTTGCTTTTCCACATCTAGTGACTTTTGTAGCTCTTCTACTTCACTAAGTGT
* * ** * *
11171404 TAATTCTCTCTCTTTCTCCAGGCCCATGTATTTTTCTTCTAAACCCTGATATCTTTTTTCCGAAT
129 TGATTCTCTCTCTTTCTCCAGACCCACATATTTTTCTTCTAATCCCTGATATCTTTTTTCCAAAT
* * * * * * * * *
11171469 CTTCCAACCTTTCCTGACTGATACTCAACTCAGAAATCAAGCCTTCTCTTTGTCTTATCAGGGCA
194 CTTCCAGCCTTTTCTGACTGACATTCAACTCAGAAATCAAACCTTCTCTCTGTGTTAGCAGGCCA
** * *
11171534 GACTTCTCATCACCAAGCAGCAGGCATGAGTTTTCTAAGCTCATTACCTTTACCCTCAATCCTCC
259 GACTTCTCATCACCAAGCAGCAGGCATGAAATTTCTAAGCTC-TTAACTTT-CCCTCAATCCTTC
*
11171599 AAGTTCAGCATGTGCATCAAAAAGGGAATTCTCCA
322 AAGTTCAGCATTTGCATCAAAAAGGGAATTCTCCA
11171634 GCACGTTATT
Statistics
Matches: 1075, Mismatches: 151, Indels: 39
0.85 0.12 0.03
Matches are distributed among these distances:
884 4 0.00
885 537 0.50
886 20 0.02
887 9 0.01
888 492 0.46
889 13 0.01
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (884 bp):
TTCCCCTTGTAGAAAATGGATCTGAGATTCCATAGAAGTAACTCGGGTTTCATTCAACTTCAAAA
ACTAGCATGTTCTTGCTTTTCCACATCTAGTGACTTTTGTAGCTCTTCTACTTCACTAAGTGTTG
ATTCTCTCTCTTTCTCCAGACCCACATATTTTTCTTCTAATCCCTGATATCTTTTTTCCAAATCT
TCCAGCCTTTTCTGACTGACATTCAACTCAGAAATCAAACCTTCTCTCTGTGTTAGCAGGCCAGA
CTTCTCATCACCAAGCAGCAGGCATGAAATTTCTAAGCTCTTAACTTTCCCTCAATCCTTCAAGT
TCAGCATTTGCATCAAAAAGGGAATTCTCCAATTCTGAAAATTGCTCGAACTGAACCTTCAACTC
CTGATGCAGTGAATTATTCTCTGTGGCAAGATTTTCAGCCTCAAGTTCCAGTTGCCCAAGCAATC
CAATAAGAACTGAATTCTCAATTATGAACTGCTGATTATCATCCAGAGACTTTAGAAGTGAATTT
TGCATCTTTTGGACCCTGCCAAATATACAGTCAAGGACTAATTGATCTTGTTTGATTGTATCATC
ATAACCACGGAACCATCAAAACCAAGAGTCCTCAACATCTGATAAAGCCCCATCCTCAGTAAAGT
AATTCGATCAAATAAGGATTCTATCTCCACCTCTTTTTGGGAATTTCCAAGCTCCAACTCAGAGA
TAAGTTTTTAGAAAAATCTGGAGGCTTCCAAGAGTTTCCTACACTCAAACAATAGGGATAAATTC
TTCACTTCCAGATCTTGTGCACATCTCTGCAAAATGAAGGTTTCTACATGAGCATTCATGGCCTT
GTCCAGTTCCTTCTCATATTCTTTCTTCCTGCACAGACT
Found at i:11177056 original size:37 final size:39
Alignment explanation
Indices: 11177015--11177099 Score: 93
Period size: 42 Copynumber: 2.2 Consensus size: 39
11177005 GGAATATTTT
* *
11177015 TATTTTATCT-TTTAA-TAATTTATTAGAATAAGTGAAC
1 TATTTTATATATTTAAGTAATTTATTAGAATAAGGGAAC
* *
11177052 TATTTTCTTTTATATTTAAGTAGTTTATTAGAATAAGGGAAC
1 TA--TT-TTATATATTTAAGTAATTTATTAGAATAAGGGAAC
11177094 TATTTT
1 TATTTT
11177100 CCCAATTAGG
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
37 2 0.05
39 4 0.10
40 6 0.15
41 5 0.13
42 22 0.56
ACGTcount: A:0.34, C:0.05, G:0.11, T:0.51
Consensus pattern (39 bp):
TATTTTATATATTTAAGTAATTTATTAGAATAAGGGAAC
Found at i:11180935 original size:19 final size:18
Alignment explanation
Indices: 11180906--11180945 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
11180896 GTATATATTT
11180906 TAAATTTATTTAGGTAGA
1 TAAATTTATTTAGGTAGA
11180924 TAAATCTTATTTAGGTAGA
1 TAAAT-TTATTTAGGTAGA
11180943 TAA
1 TAA
11180946 GTTTCATTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.40, C:0.03, G:0.15, T:0.42
Consensus pattern (18 bp):
TAAATTTATTTAGGTAGA
Found at i:11182738 original size:30 final size:30
Alignment explanation
Indices: 11182704--11182760 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
11182694 AAAATATGTT
*
11182704 ATAAGTTTTTGTATTTTTTATTTATTTTTA
1 ATAAGTTTTTGTATTTTTTATATATTTTTA
11182734 ATAAGTTTTTGTATTTTTTATATATTT
1 ATAAGTTTTTGTATTTTTTATATATTT
11182761 AGAACTTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.25, C:0.00, G:0.07, T:0.68
Consensus pattern (30 bp):
ATAAGTTTTTGTATTTTTTATATATTTTTA
Found at i:11189719 original size:21 final size:23
Alignment explanation
Indices: 11189672--11189725 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
11189662 CATTCAAGAT
**
11189672 AAAATAATATATAAAACTCTTTA
1 AAAATAATATATAAAACTAATTA
*
11189695 AAAATAATATAT-AAAC-AATTC
1 AAAATAATATATAAAACTAATTA
11189716 AAAAT-ATATA
1 AAAATAATATA
11189726 ATGTGTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.18
21 7 0.25
22 4 0.14
23 12 0.43
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.31
Consensus pattern (23 bp):
AAAATAATATATAAAACTAATTA
Found at i:11189959 original size:15 final size:15
Alignment explanation
Indices: 11189935--11189980 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
11189925 ATATAAATAG
*
11189935 AAATAAAAATATAAT
1 AAATAGAAATATAAT
11189950 AAATAGAAATATAAT
1 AAATAGAAATATAAT
11189965 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
11189981 ATAGATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:11189968 original size:23 final size:23
Alignment explanation
Indices: 11189902--11189968 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 23
11189892 TATAAGAAAA
*
11189902 ATAAT-AAT-GAAA-ATAATATT
1 ATAATAAATAGAAATATAATAAT
11189922 AGTATATAAATAGAAATA-AA-AAT
1 A-TA-ATAAATAGAAATATAATAAT
11189945 ATAATAAATAGAAATATAATAAT
1 ATAATAAATAGAAATATAATAAT
11189968 A
1 A
11189969 GTAGAAATAT
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
20 1 0.03
21 15 0.38
22 6 0.15
23 10 0.26
24 6 0.15
25 1 0.03
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (23 bp):
ATAATAAATAGAAATATAATAAT
Found at i:11189983 original size:44 final size:44
Alignment explanation
Indices: 11189929--11190012 Score: 102
Period size: 44 Copynumber: 1.9 Consensus size: 44
11189919 ATTAGTATAT
11189929 AAATAGAAATA-A-AAATATAATAAATAGA-AATATAATAATAGTAG
1 AAATAGAAATAGATAAATA-AA-AAATAGATAA-ATAATAATAGTAG
* *
11189973 AAATATAAATAGATAAATAAAAATTAGATAAATAATAATA
1 AAATAGAAATAGATAAATAAAAAATAGATAAATAATAATA
11190013 ATATTAGAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
44 25 0.71
45 5 0.14
46 5 0.14
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (44 bp):
AAATAGAAATAGATAAATAAAAAATAGATAAATAATAATAGTAG
Found at i:11190000 original size:15 final size:14
Alignment explanation
Indices: 11189927--11190012 Score: 59
Period size: 15 Copynumber: 5.9 Consensus size: 14
11189917 ATATTAGTAT
*
11189927 ATAAATAGAAATA-
1 ATAAATAAAAATAG
*
11189940 AAAATATAATAAATAG
1 ATAA-ATAA-AAATAG
*
11189956 A-AATATAATAATAG
1 ATAA-ATAAAAATAG
* *
11189970 TAGAAATATAAATAG
1 -ATAAATAAAAATAG
11189985 ATAAATAAAAATTAG
1 ATAAATAAAAA-TAG
*
11190000 ATAAATAATAATA
1 ATAAATAAAAATA
11190013 ATATTAGAAT
Statistics
Matches: 59, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
13 3 0.05
14 19 0.32
15 34 0.58
16 3 0.05
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.27
Consensus pattern (14 bp):
ATAAATAAAAATAG
Found at i:11191348 original size:32 final size:32
Alignment explanation
Indices: 11191275--11191366 Score: 94
Period size: 32 Copynumber: 2.8 Consensus size: 32
11191265 CCAACAAAGA
* * * *
11191275 TTAAGTACCAACTTAAGAAAAAAATGTCAAGT
1 TTAAGTACCAAATTAAAAAAAAAAGGTCAAAT
**
11191307 TTTGGTACCAAATTAAAAAAAAAAGGTCAAAT
1 TTAAGTACCAAATTAAAAAAAAAAGGTCAAAT
*
11191339 TTAAATACCAAATTGAACTAAAAAAAAG
1 TTAAGTACCAAATT-AA--AAAAAAAAG
11191367 TAAATACTAA
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
32 37 0.77
33 2 0.04
35 9 0.19
ACGTcount: A:0.54, C:0.11, G:0.11, T:0.24
Consensus pattern (32 bp):
TTAAGTACCAAATTAAAAAAAAAAGGTCAAAT
Found at i:11192967 original size:18 final size:19
Alignment explanation
Indices: 11192929--11192969 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
11192919 TTGGTTCATG
11192929 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
11192948 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
11192966 TTTC
1 TTTC
11192970 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:11193529 original size:25 final size:26
Alignment explanation
Indices: 11193495--11193566 Score: 78
Period size: 24 Copynumber: 2.9 Consensus size: 26
11193485 CACATATAAC
11193495 ATATAAATTCAATTCAATTCAATCA-
1 ATATAAATTCAATTCAATTCAATCAT
* *
11193520 ATATAAATTCAA-TAAATTC-ATTAT
1 ATATAAATTCAATTCAATTCAATCAT
* * *
11193544 ATATAAAATCAATCCATTTCAAT
1 ATATAAATTCAATTCAATTCAAT
11193567 TATAAAACAC
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
23 3 0.08
24 17 0.45
25 16 0.42
26 2 0.05
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.38
Consensus pattern (26 bp):
ATATAAATTCAATTCAATTCAATCAT
Found at i:11194435 original size:13 final size:12
Alignment explanation
Indices: 11194403--11194436 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
11194393 TTCTTATATA
11194403 TATATAATAACT
1 TATATAATAACT
11194415 TA-ATAATATACT
1 TATATAATA-ACT
11194427 TATATAATAA
1 TATATAATAA
11194437 GTAAACATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 6 0.30
12 8 0.40
13 6 0.30
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (12 bp):
TATATAATAACT
Found at i:11195068 original size:15 final size:15
Alignment explanation
Indices: 11195036--11195073 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
11195026 CCAATTATCC
11195036 TTAATTAAGTTAAAT
1 TTAATTAAGTTAAAT
*
11195051 TTACTTAA-TTAAATT
1 TTAATTAAGTTAAA-T
11195066 TTAATTAA
1 TTAATTAA
11195074 CCACTCACTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 5 0.25
15 15 0.75
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (15 bp):
TTAATTAAGTTAAAT
Found at i:11196697 original size:43 final size:41
Alignment explanation
Indices: 11196647--11196899 Score: 213
Period size: 43 Copynumber: 6.0 Consensus size: 41
11196637 AAACTTTAGC
* *
11196647 GGCGCTTTTTCCACAAACGCCGCTATAGAACATGACTTTTAT
1 GGCGC-TTTTCCACAAACGCCGCTAAAGAACATGACCTTTAT
* * * *
11196689 CGGTGCTTTACCGCAAACG-CGTTAAAGAACATGACCTTTAGT
1 -GGCGCTTTTCCACAAACGCCGCTAAAGAACATGACCTTTA-T
*** * ** * *
11196731 TATGCTTTTCTCACAAACACTACTAAATAACATGGCCTTTAGT
1 GGCGCTTTTC-CACAAACGCCGCTAAAGAACATGACCTTTA-T
**
11196774 GGCGCTTTTTTTACAAACGCCGCTAAAGAACATGACCTTTAAT
1 GGCGC-TTTTCCACAAACGCCGCTAAAGAACATGACCTTT-AT
* * *
11196817 GACGCTTTTCCCACAAACGCCGCTATAGAACA-GACCTTTAGC
1 GGCGCTTTT-CCACAAACGCCGCTAAAGAACATGACCTTTA-T
* *
11196859 GGCACTTTTCTCACGAACGCCGCTAAAGAACATGACCTTTA
1 GGCGCTTTTC-CACAAACGCCGCTAAAGAACATGACCTTTA
11196900 AAAAAATATT
Statistics
Matches: 166, Mismatches: 35, Indels: 18
0.76 0.16 0.08
Matches are distributed among these distances:
41 27 0.16
42 55 0.33
43 79 0.48
44 5 0.03
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (41 bp):
GGCGCTTTTCCACAAACGCCGCTAAAGAACATGACCTTTAT
Found at i:11196893 original size:85 final size:86
Alignment explanation
Indices: 11196649--11196900 Score: 285
Period size: 85 Copynumber: 3.0 Consensus size: 86
11196639 ACTTTAGCGG
* * * * * * *
11196649 CGCTTTTTCCACAAACGCCGCTATAGAACATGACTTTTATCGGTGCTTTAC-CGCAAACG-CGTT
1 CGCTTTTCCCACAAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTCTCACAAACGCCGCT
* *
11196712 AAAGAACATGACCTTTAGTTA
66 AAAGAACATGACCTTTAATGA
* * * ** * * * * * *
11196733 TGCTTTTCTCACAAACACTACTAAATAACATGGCCTTTAGTGGCGCTTTTTTTACAAACGCCGCT
1 CGCTTTTCCCACAAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTCTCACAAACGCCGCT
11196798 AAAGAACATGACCTTTAATGA
66 AAAGAACATGACCTTTAATGA
* *
11196819 CGCTTTTCCCACAAACGCCGCTATAGAACA-GACCTTTAGCGGCACTTTTCTCACGAACGCCGCT
1 CGCTTTTCCCACAAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTCTCACAAACGCCGCT
11196883 AAAGAACATGACCTTTAA
66 AAAGAACATGACCTTTAA
11196901 AAAAATATTT
Statistics
Matches: 133, Mismatches: 33, Indels: 3
0.79 0.20 0.02
Matches are distributed among these distances:
84 36 0.27
85 52 0.39
86 45 0.34
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (86 bp):
CGCTTTTCCCACAAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTCTCACAAACGCCGCT
AAAGAACATGACCTTTAATGA
Found at i:11197149 original size:6 final size:6
Alignment explanation
Indices: 11197103--11197131 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
11197093 CTTAAATATT
11197103 AAAATA AAAATA AAAATA AAAATA AAAAT
1 AAAATA AAAATA AAAATA AAAATA AAAAT
11197132 TTAGAATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:11204286 original size:26 final size:26
Alignment explanation
Indices: 11204231--11204303 Score: 92
Period size: 26 Copynumber: 2.8 Consensus size: 26
11204221 TCTCATCCCT
* **
11204231 ATTTTACCCCTAGCAAAATTTTGATG
1 ATTTTACCCCTAGTAAAATTTTGACA
11204257 ATTTTACCCCTAGTAAAATTTTGACA
1 ATTTTACCCCTAGTAAAATTTTGACA
* * *
11204283 ATTTTGCCTCTGGTAAAATTT
1 ATTTTACCCCTAGTAAAATTT
11204304 CGAGAAAATA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.30, C:0.18, G:0.11, T:0.41
Consensus pattern (26 bp):
ATTTTACCCCTAGTAAAATTTTGACA
Found at i:11207210 original size:46 final size:46
Alignment explanation
Indices: 11207158--11207568 Score: 529
Period size: 46 Copynumber: 9.0 Consensus size: 46
11207148 GCTTTCTGAA
*
11207158 ATGAAATGTGTAAGACCATGGCTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
11207204 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
11207250 ATAAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
11207296 ATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAACATTAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
11207342 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
11207388 ATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGA-
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * ** ** * *
11207433 CGGGAATGAATAAGACCATGGTTGAAAGATACCATGGCAATGTAAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*** * * * *
11207479 ATGAAATGAACAAGACCATGGTTGAAAGATACTATGACAACCTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * * * *
11207525 A-GAAAATGAGTAAAACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
11207569 TCAAAGATAA
Statistics
Matches: 325, Mismatches: 38, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
45 37 0.11
46 288 0.89
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Done.