Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 43 of 362
Found at i:12631086 original size:23 final size:23
Alignment explanation
Indices: 12631059--12631106 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
12631049 TAAGAAAAAT
12631059 AATGTAAAAAATAT-ATATGATAA
1 AATGTAAAAAATATAATAT-ATAA
* *
12631082 AATGTATATAATATAATATATAA
1 AATGTAAAAAATATAATATATAA
12631105 AA
1 AA
12631107 ATATCATATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 18 0.82
24 4 0.18
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.33
Consensus pattern (23 bp):
AATGTAAAAAATATAATATATAA
Found at i:12631126 original size:17 final size:17
Alignment explanation
Indices: 12631104--12631143 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
12631094 ATAATATATA
* *
12631104 AAAATATCATATGGAGT
1 AAAATATAATATGGAAT
*
12631121 AAAATATAATATGTAAT
1 AAAATATAATATGGAAT
12631138 AAAATA
1 AAAATA
12631144 ATATGAAAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.57, C:0.03, G:0.10, T:0.30
Consensus pattern (17 bp):
AAAATATAATATGGAAT
Found at i:12633229 original size:21 final size:20
Alignment explanation
Indices: 12633192--12633230 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
12633182 AATATAAATA
* *
12633192 TATTTATTAAATTTTATTTT
1 TATTTATAAAATATTATTTT
12633212 TATTTAATAAAATATTATT
1 TATTT-ATAAAATATTATT
12633231 AATATGTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
TATTTATAAAATATTATTTT
Found at i:12644765 original size:69 final size:69
Alignment explanation
Indices: 12644305--12644766 Score: 360
Period size: 69 Copynumber: 6.7 Consensus size: 69
12644295 CAAACTTTAG
* * * * * * * * *
12644305 TTTTATAGTTA-GAGATTTGCTTTCGTTAACTGTGTTGGGGGTTGCAGTTCTTCACCTATGAACC
1 TTTTATAGCTAGGAGCTTTGCTCTCGCTAACTGTGTTGGAGGTCGCGGCTCTTCACCTACGAACC
*
12644369 ATGA
66 TTGA
* * * * * * ** **
12644373 TTTTATAG-TTGTGTGCTTTTCTCTCGCTAACTGTGTTAGAGGTTGCAGCTCTTTGCCTGTGAAC
1 TTTTATAGCTAG-GAGCTTTGCTCTCGCTAACTGTGTTGGAGGTCGCGGCTCTTCACCTACGAAC
12644437 CTTGA
65 CTTGA
* * * * **
12644442 TTTTATATCTAGGAGCTTTGCTCTCACTAATTGTGTTAGAGGTCATGGCTCTTCACCTACGAACC
1 TTTTATAGCTAGGAGCTTTGCTCTCGCTAACTGTGTTGGAGGTCGCGGCTCTTCACCTACGAACC
*
12644507 TTTA
66 TTGA
* * * * * * *
12644511 TTTTAGAGCTAAGAACTTTCCTCTCGCTAACTGTGTTGGAGGTCGCAGCTTTTCGCCTA--AACC
1 TTTTATAGCTAGGAGCTTTGCTCTCGCTAACTGTGTTGGAGGTCGCGGCTCTTCACCTACGAACC
*
12644574 TTAA
66 TTGA
* * * * * * * **
12644578 TTTTACT-GATGGGAGTTTTGCTCTTGCTAACTATGTTGAAGGCCGCGAATCTTCACCTACGAAC
1 TTTTA-TAGCTAGGAGCTTTGCTCTCGCTAACTGTGTTGGAGGTCGCGGCTCTTCACCTACGAAC
*
12644642 CTTTA
65 CTTGA
* * * ** * **
12644647 TTTTACAGCTGGGTA-CTTTGCTCTCGCTAACTATGTTAAATGTTACGGCTCTTCACCTACGAAC
1 TTTTATAGCTAGG-AGCTTTGCTCTCGCTAACTGTGTTGGAGGTCGCGGCTCTTCACCTACGAAC
12644711 CTTGA
65 CTTGA
* *
12644716 TTTTATAGCTAGGAGCTTTGCTCTTGCTAGCTGTGTTGGAGGTCGCGGCTC
1 TTTTATAGCTAGGAGCTTTGCTCTCGCTAACTGTGTTGGAGGTCGCGGCTC
12644767 CTCGCTTGCG
Statistics
Matches: 304, Mismatches: 81, Indels: 17
0.76 0.20 0.04
Matches are distributed among these distances:
67 50 0.16
68 9 0.03
69 242 0.80
70 3 0.01
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.38
Consensus pattern (69 bp):
TTTTATAGCTAGGAGCTTTGCTCTCGCTAACTGTGTTGGAGGTCGCGGCTCTTCACCTACGAACC
TTGA
Found at i:12657501 original size:18 final size:18
Alignment explanation
Indices: 12657457--12657493 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
12657447 TTAAGTGAGA
*
12657457 AACTA-AAAACAGAGTTT
1 AACTAGAAAACAAAGTTT
12657474 AACTAGAAAACAAAGTTT
1 AACTAGAAAACAAAGTTT
12657492 AA
1 AA
12657494 TTGGAAAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.57, C:0.11, G:0.11, T:0.22
Consensus pattern (18 bp):
AACTAGAAAACAAAGTTT
Found at i:12657577 original size:23 final size:26
Alignment explanation
Indices: 12657551--12657605 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 26
12657541 ATCATTAACA
12657551 ATTAATT-ATTT-AC-ATTATTATAT
1 ATTAATTGATTTAACTATTATTATAT
*
12657574 ATT-ATTGGTTTAACTATTATTATAT
1 ATTAATTGATTTAACTATTATTATAT
*
12657599 AATAATT
1 ATTAATT
12657606 TATTAGTCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
22 3 0.12
23 6 0.23
24 2 0.08
25 12 0.46
26 3 0.12
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.55
Consensus pattern (26 bp):
ATTAATTGATTTAACTATTATTATAT
Found at i:12660513 original size:29 final size:29
Alignment explanation
Indices: 12660460--12660528 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 29
12660450 TCCTCTTAAA
*
12660460 TTTAAAATTTAGTTGTTGTAGTTTTA-TT
1 TTTAAAATTTAGTTGTTGTAGTTTTAGAT
* *
12660488 TTTAAGAATTTAGTT-TCTTTATTTTTAGAT
1 TTTAA-AATTTAGTTGT-TGTAGTTTTAGAT
12660518 TTTAAAATTTA
1 TTTAAAATTTA
12660529 AGTCCAACTG
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
28 6 0.17
29 23 0.66
30 6 0.17
ACGTcount: A:0.29, C:0.01, G:0.10, T:0.59
Consensus pattern (29 bp):
TTTAAAATTTAGTTGTTGTAGTTTTAGAT
Found at i:12662560 original size:20 final size:20
Alignment explanation
Indices: 12662535--12662574 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
12662525 CGTAAAATGA
*
12662535 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
12662555 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
12662575 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:12662564 original size:34 final size:35
Alignment explanation
Indices: 12662520--12662586 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
12662510 CAGTAAAATA
*
12662520 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
12662554 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
12662587 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:12662590 original size:14 final size:15
Alignment explanation
Indices: 12662514--12662590 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
12662504 GATTGCCAGT
* *
12662514 AAAAT-ATTTTCCGT
1 AAAATGATTTTCTGG
12662528 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
12662542 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
12662562 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
12662577 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
12662591 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 24 0.48
15 12 0.24
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:12666007 original size:2 final size:2
Alignment explanation
Indices: 12666000--12666034 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
12665990 AAGCTGCTTC
12666000 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
12666035 CCCCTTTTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:12675034 original size:2 final size:2
Alignment explanation
Indices: 12675029--12675080 Score: 95
Period size: 2 Copynumber: 26.0 Consensus size: 2
12675019 CACACAATAC
*
12675029 CA CA CA CA CA CA TA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
12675071 CA CA CA CA CA
1 CA CA CA CA CA
12675081 TATCAATTAC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.48, G:0.00, T:0.02
Consensus pattern (2 bp):
CA
Found at i:12675779 original size:42 final size:42
Alignment explanation
Indices: 12675730--12675840 Score: 120
Period size: 44 Copynumber: 2.6 Consensus size: 42
12675720 TTGATGCCGC
*
12675730 TGTCCCAGACAGTGTCTTACACGAAA-TCATATACGATGCCAA
1 TGTCCCAGACAGTGTCTTACACGAAATTCAAAT-CGATGCCAA
*
12675772 TGTCCCAGACA-TGATCTTACACGTAAATTTCAAATTGATGCCAA
1 TGTCCCAGACAGTG-TCTTACACG-AAA-TTCAAATCGATGCCAA
* *
12675816 CGCCCCAGACGAG-GTCTTACACGAA
1 TGTCCCAGAC-AGTGTCTTACACGAA
12675841 GTCACATATC
Statistics
Matches: 59, Mismatches: 4, Indels: 11
0.80 0.05 0.15
Matches are distributed among these distances:
41 2 0.03
42 20 0.34
43 5 0.08
44 25 0.42
45 7 0.12
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.23
Consensus pattern (42 bp):
TGTCCCAGACAGTGTCTTACACGAAATTCAAATCGATGCCAA
Found at i:12684655 original size:20 final size:20
Alignment explanation
Indices: 12684630--12684669 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
12684620 CCCAATCCTT
12684630 TCCCTTACAAGGATGATAGG
1 TCCCTTACAAGGATGATAGG
12684650 TCCCTTACAAGGATGATAGG
1 TCCCTTACAAGGATGATAGG
12684670 AGGGTGCCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (20 bp):
TCCCTTACAAGGATGATAGG
Found at i:12691986 original size:40 final size:40
Alignment explanation
Indices: 12691928--12692095 Score: 214
Period size: 40 Copynumber: 4.2 Consensus size: 40
12691918 TCTTCGGTAT
*
12691928 TTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
*
12691967 TTAGCCCGGATATAGCAACTCGGACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
* * * * *
12692007 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGAGAC
1 TTAGCCCGGATAT-AGCAACTCGCACAAATGCCTTCGGGTC
* * *
12692047 ATAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
*
12692087 TTAGTCCGG
1 TTAGCCCGG
12692096 TTATCATCCG
Statistics
Matches: 108, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
39 6 0.06
40 100 0.93
41 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
Found at i:12692128 original size:51 final size:51
Alignment explanation
Indices: 12692052--12692156 Score: 210
Period size: 51 Copynumber: 2.1 Consensus size: 51
12692042 GAGACATAGC
12692052 CCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATCAT
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATCAT
12692103 CCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATCAT
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATCAT
12692154 CCG
1 CCG
12692157 AATAATCATG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.27
Consensus pattern (51 bp):
CCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATCAT
Found at i:12694375 original size:210 final size:209
Alignment explanation
Indices: 12693947--12694528 Score: 648
Period size: 210 Copynumber: 2.8 Consensus size: 209
12693937 CATAGCAATC
* * * * *
12693947 TCACCTTAAAATGTTTACACTGAAGCAGATCCAAGATGACAGATCTTATCTCTCTGTAGTCGGCA
1 TCACCTTCAAATGTTTACGCTGAAGCAGATCCAAGATGGCAGATCTTATCTCTCTGTATTCAGCA
* * *
12694012 GGGAACAGATCGAAGATATAGGTGATTTGGCTTTCATGTGTTTACGATGAAGCAAATCTAAGATG
66 -GGAGCAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATG
* * **
12694077 ATTTGTTG-CATCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCTACTTTGATGGAAGGC
130 ATTTGTTGTC-TCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATGGAAGGC
* *
12694141 AGACACATAGCAGGTA
194 AAACACACAGCAGGTA
12694157 TCACCTTCAAATGTTTACGCTGAAGCAGATCCAAGATGGCAGATCTTATCTCTCTGTATTCAGCG
1 TCACCTTCAAATGTTTACGCTGAAGCAGATCCAAGATGGCAGATCTTATCTCTCTGTATTCAGC-
12694222 AGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATG
65 AGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATG
* * * *
12694287 ATTTGTCGTCTCTGTATTGTCAGAGAATAGATCGAAGTCTGGCATCTCCAGTTCAATGG-AGAGC
130 ATTTGTTGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATGGAAG-GC
*
12694351 AAATACACAGCA-G-A
194 AAACACACAGCAGGTA
* * * ** * *
12694365 TCAGACCTTCAGATGATTA-GACTAAAGCAAGATCCAAGATGGTTTG-GC--ATC-CT-TGTGCT
1 TC--ACCTTCAAATGTTTACG-CTGAAGC-AGATCCAAGATGG-CAGATCTTATCTCTCTGT-AT
* * * * * * *
12694424 T-A-AAGGAGCAAATCAAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTAAAGCAAATCTA
60 TCAGCAGGAGCAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTA
* * * * *
12694487 AGACGAATTGTTATCTTTGTATTGTCAGAGAACAAATTGAAG
125 AGATGATTTGTTGTCTCTGTATTGTCAGAGAACAAATCGAAG
12694529 AAGCGGATTT
Statistics
Matches: 322, Mismatches: 41, Indels: 23
0.83 0.11 0.06
Matches are distributed among these distances:
205 88 0.27
207 4 0.01
208 7 0.02
209 7 0.02
210 199 0.62
211 16 0.05
212 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (209 bp):
TCACCTTCAAATGTTTACGCTGAAGCAGATCCAAGATGGCAGATCTTATCTCTCTGTATTCAGCA
GGAGCAGATCGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGA
TTTGTTGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATGGAAGGCAA
ACACACAGCAGGTA
Found at i:12696546 original size:22 final size:20
Alignment explanation
Indices: 12696481--12696548 Score: 66
Period size: 20 Copynumber: 3.3 Consensus size: 20
12696471 ATTATTATTT
**
12696481 ATTATATATTATTTTACACAA
1 ATTAT-TATTATTTTACATTA
12696502 ATTATTATTATTTTACATT-
1 ATTATTATTATTTTACATTA
**
12696521 ATTATCTATATATTTTTTATTA
1 ATTAT-TAT-TATTTTACATTA
12696543 ATTATT
1 ATTATT
12696549 TGTACATATT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
19 5 0.12
20 15 0.38
21 15 0.38
22 5 0.12
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (20 bp):
ATTATTATTATTTTACATTA
Found at i:12696559 original size:35 final size:33
Alignment explanation
Indices: 12696503--12696569 Score: 91
Period size: 35 Copynumber: 2.0 Consensus size: 33
12696493 TTTACACAAA
*
12696503 TTATTATTATTTTACATTATTATCTATATATTTT
1 TTATTATTATTTTACATTATTATATAT-TATTTT
12696537 TTATTAATTATTTGTACA-TATTATATATTATTT
1 TTATT-ATTATTT-TACATTATTATATATTATTT
12696570 ATACATATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
34 10 0.33
35 16 0.53
36 4 0.13
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.63
Consensus pattern (33 bp):
TTATTATTATTTTACATTATTATATATTATTTT
Found at i:12699036 original size:20 final size:21
Alignment explanation
Indices: 12699011--12699049 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
12699001 TCCTTAAAAC
*
12699011 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCATGTGGA
12699031 AGGGCAACACGCCCATGTG
1 AGGGCAACACGCCCATGTG
12699050 ACGAACTCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.31, G:0.36, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCATGTGGA
Found at i:12700128 original size:47 final size:48
Alignment explanation
Indices: 12700057--12700322 Score: 212
Period size: 47 Copynumber: 5.7 Consensus size: 48
12700047 TGGGTAAGGT
* *
12700057 GCCGATGCCGTGTCCCAAACATGGTCTTACACTGGCTCAT-ATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAA
* * * * *
12700104 GTCGATGCCATGTCCCTGACATGGTTTTACACTAGCT-ATCATCTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTC-AA
* * * * * *
12700152 GCCGACG-CATGTTCCAAACAT-GTCTTACACTGGCTTA-CGTCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTC-AA
* * * *
12700198 GCTGATG-CATGTCCCAGACAT-GTCTTACACTAGCAC-TCGTCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAA
* * * ***
12700243 TGCCGATGCCATGTCCCAGACACGATCTTACACTGGCTC-TCATAATGTG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAT-CTCAA
12700292 GCCGATG-CATGTCCCAGACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
12700323 AGCCAACAAT
Statistics
Matches: 174, Mismatches: 37, Indels: 17
0.76 0.16 0.07
Matches are distributed among these distances:
45 1 0.01
46 70 0.40
47 74 0.43
48 28 0.16
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAA
Found at i:12700319 original size:140 final size:140
Alignment explanation
Indices: 12700067--12700322 Score: 320
Period size: 140 Copynumber: 1.8 Consensus size: 140
12700057 GCCGATGCCG
* * * * * * *
12700067 TGTCCCAAACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCTGACATGGTTTT
1 TGTCCCAAACATGGTCTTACACTAGCACATATCTCAAGCCGATGCCATGTCCCAGACACGATCTT
* *
12700132 ACACTAGCTATCATCTCGTAGCCGACGCATGTTCCAAACATGTCTTACACTGGCTTACGTCTCGA
66 ACACTAGCTATCATATCGTAGCCGACGCATGTCCCAAACATGTCTTACACTGGCTTACGTCTCGA
12700197 GGCTGATGCA
131 GGCTGATGCA
* *
12700207 TGTCCCAGACAT-GTCTTACACTAGCAC-TCGTCTCAATGCCGATGCCATGTCCCAGACACGATC
1 TGTCCCAAACATGGTCTTACACTAGCACAT-ATCTCAA-GCCGATGCCATGTCCCAGACACGATC
* * * * *
12700270 TTACACTGGCTCTCATAAT-GTGGCCGATGCATGTCCCAGACATGTCTTACACT
64 TTACACTAGCTATCAT-ATCGTAGCCGACGCATGTCCCAAACATGTCTTACACT
12700323 AGCCAACAAT
Statistics
Matches: 97, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
138 1 0.01
139 19 0.20
140 76 0.78
141 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (140 bp):
TGTCCCAAACATGGTCTTACACTAGCACATATCTCAAGCCGATGCCATGTCCCAGACACGATCTT
ACACTAGCTATCATATCGTAGCCGACGCATGTCCCAAACATGTCTTACACTGGCTTACGTCTCGA
GGCTGATGCA
Found at i:12701600 original size:18 final size:18
Alignment explanation
Indices: 12701577--12701611 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
12701567 TATCTTCAAT
*
12701577 ATTAAATATGTAAATATA
1 ATTAAATATCTAAATATA
*
12701595 ATTAAATTTCTAAATAT
1 ATTAAATATCTAAATAT
12701612 TTTATTTCAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (18 bp):
ATTAAATATCTAAATATA
Found at i:12703568 original size:15 final size:15
Alignment explanation
Indices: 12703548--12703579 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
12703538 ACAAAGTGTC
12703548 AATATATTAGTATTA
1 AATATATTAGTATTA
12703563 AATATATTAGTATTA
1 AATATATTAGTATTA
12703578 AA
1 AA
12703580 GTTTCGTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (15 bp):
AATATATTAGTATTA
Found at i:12711421 original size:30 final size:30
Alignment explanation
Indices: 12711380--12711436 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
12711370 ACGACCATGA
* *
12711380 CACACGGGTGTGTGGTTTGCTCGTGTGTCT
1 CACACGGGTGTGTGGATTGCCCGTGTGTCT
*
12711410 CACATGGGTGTGTGGATTGCCCGTGTG
1 CACACGGGTGTGTGGATTGCCCGTGTG
12711437 GAAGTGTCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.09, C:0.19, G:0.39, T:0.33
Consensus pattern (30 bp):
CACACGGGTGTGTGGATTGCCCGTGTGTCT
Found at i:12712154 original size:31 final size:31
Alignment explanation
Indices: 12712119--12712180 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
12712109 AGAATCGAGA
12712119 TTGAATTGATAAATTACCTAACTAGAAAAAT
1 TTGAATTGATAAATTACCTAACTAGAAAAAT
12712150 TTGAATTGATAAATTACCTAACTAGAAAAAT
1 TTGAATTGATAAATTACCTAACTAGAAAAAT
12712181 AAACTAACAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.32
Consensus pattern (31 bp):
TTGAATTGATAAATTACCTAACTAGAAAAAT
Found at i:12713297 original size:6 final size:6
Alignment explanation
Indices: 12713279--12713360 Score: 119
Period size: 6 Copynumber: 13.3 Consensus size: 6
12713269 ATAGGAAAAC
*
12713279 AAAATA AACATA AAAATA AAAATAAA AAAATA AAAATA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAAT--A AAAATA AAAATA AAAATA AAAATA
* *
12713329 AAAATA AAAATA AAAATA AACATA AAGATA AA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AA
12713361 TGGACTCAAT
Statistics
Matches: 70, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
6 64 0.91
8 6 0.09
ACGTcount: A:0.80, C:0.02, G:0.01, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:12714027 original size:30 final size:30
Alignment explanation
Indices: 12713991--12714050 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
12713981 TATTTTATTA
*
12713991 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTATTATTATTTTAAAGGCATTTG
* *
12714021 TTAATTTTATTATTATTTTAGAGGTATTTG
1 TTAATTTTATTATTATTTTAAAGGCATTTG
12714051 CTTGTTAAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.27, C:0.02, G:0.13, T:0.58
Consensus pattern (30 bp):
TTAATTTTATTATTATTTTAAAGGCATTTG
Found at i:12715257 original size:13 final size:14
Alignment explanation
Indices: 12715227--12715264 Score: 51
Period size: 13 Copynumber: 2.6 Consensus size: 14
12715217 GAGCGAACAA
12715227 AAATAATAAAGAAAT
1 AAATAA-AAAGAAAT
12715242 AAATAAAAAG-AAT
1 AAATAAAAAGAAAT
12715255 AAATAGAAAA
1 AAATA-AAAA
12715265 TAGTAAGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 8 0.36
14 8 0.36
15 6 0.27
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (14 bp):
AAATAAAAAGAAAT
Found at i:12718662 original size:6 final size:6
Alignment explanation
Indices: 12718648--12718834 Score: 154
Period size: 6 Copynumber: 30.8 Consensus size: 6
12718638 AACCAAAATG
* *
12718648 AGAAAC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
12718696 AGTAA-C ATAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
12718745 AGAATC AGTAA-C AGAATC AGAATC AGAATT AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* *
12718793 AGAATC AGAATC AGAATT ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
12718835 GTGAATGCAA
Statistics
Matches: 148, Mismatches: 17, Indels: 32
0.75 0.09 0.16
Matches are distributed among these distances:
5 11 0.07
6 124 0.84
7 10 0.07
8 3 0.02
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:12718753 original size:85 final size:85
Alignment explanation
Indices: 12718648--12718834 Score: 329
Period size: 85 Copynumber: 2.2 Consensus size: 85
12718638 AACCAAAATG
* *
12718648 AGAAACAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACATAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
*
12718713 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATTACGTGAC
* *
12718733 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATTAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
12718798 CAGAATCAGAATTACGTGAC
66 CAGAATCAGAATTACGTGAC
12718818 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
12718835 GTGAATGCAA
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 97 1.00
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
CAGAATCAGAATTACGTGAC
Found at i:12718989 original size:27 final size:26
Alignment explanation
Indices: 12718952--12719017 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
12718942 AGCATGGCTG
*
12718952 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
12718978 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
12719005 CCAGAATCAGATA
1 CCAGAA-CAGATA
12719018 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:12719022 original size:27 final size:27
Alignment explanation
Indices: 12718952--12719034 Score: 82
Period size: 27 Copynumber: 3.1 Consensus size: 27
12718942 AGCATGGCTG
* *
12718952 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
12718978 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
* *
12719005 CCAGAATCAGATAATGTGGCAAACCCA
1 CCAGAATCAGATAATGTGGCAGAGCCA
12719032 CCA
1 CCA
12719035 ACAGAATACG
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
25 1 0.02
26 4 0.09
27 39 0.83
28 3 0.06
ACGTcount: A:0.37, C:0.25, G:0.22, T:0.16
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:12719236 original size:22 final size:22
Alignment explanation
Indices: 12719189--12719246 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
12719179 GTAAATACGT
12719189 TTGGCAC-AAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
12719210 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
12719232 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
12719247 TAATAACGGG
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 6 0.20
22 24 0.80
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:12719413 original size:27 final size:26
Alignment explanation
Indices: 12719334--12719415 Score: 101
Period size: 27 Copynumber: 3.1 Consensus size: 26
12719324 TCGATCGGTC
** * *
12719334 AACAGATATTGTGATAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
12719360 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
12719387 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
12719414 AA
1 AA
12719416 TGCTTCCTCC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 41 0.84
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.21
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:12719464 original size:16 final size:16
Alignment explanation
Indices: 12719443--12719473 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
12719433 ATCCCAACCC
*
12719443 ATGCAACATGTCATGT
1 ATGCAAAATGTCATGT
12719459 ATGCAAAATGTCATG
1 ATGCAAAATGTCATG
12719474 CCCATATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.29
Consensus pattern (16 bp):
ATGCAAAATGTCATGT
Found at i:12719645 original size:27 final size:27
Alignment explanation
Indices: 12719615--12719810 Score: 230
Period size: 27 Copynumber: 7.3 Consensus size: 27
12719605 GGGGCAAAAT
* * * *
12719615 GGTAATTTTACCCCACAACGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
12719642 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
12719669 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
12719696 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
12719723 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
12719750 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
12719777 AGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
12719804 AGTAATT
1 GGTAATT
12719811 TCACAATCAA
Statistics
Matches: 147, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 147 1.00
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:12719845 original size:27 final size:27
Alignment explanation
Indices: 12719815--12720174 Score: 404
Period size: 27 Copynumber: 13.3 Consensus size: 27
12719805 GTAATTTCAC
* *
12719815 AATCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
12719842 AATCGAGGGTAAAATGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
12719869 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
12719896 AATCAAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
12719923 AA-CTGAGGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* ** *
12719950 AATCGAGTGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
12719977 AA-CTGAGGTTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
12720004 AATCGAGGGTAAAACGGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
12720031 AATTGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
12720058 AATCGAGGGTAAAACTGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
12720085 AA-CTGAGGGTAAAACGGTAATTTTAAAAA
1 AATC-GAGGGTAAAACGGTAATTCT--GTA
12720114 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
12720141 AATCGAGGGTAAAACGGTAATTATGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
12720168 AATCGAG
1 AATCGAG
12720175 ATTATTTTGG
Statistics
Matches: 280, Mismatches: 43, Indels: 20
0.82 0.13 0.06
Matches are distributed among these distances:
26 4 0.01
27 250 0.89
28 3 0.01
29 22 0.08
30 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:12719962 original size:108 final size:107
Alignment explanation
Indices: 12719820--12720174 Score: 480
Period size: 108 Copynumber: 3.3 Consensus size: 107
12719810 TTCACAATCA
* * * *
12719820 AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGATAATTTTGTAAACTGAGGGTAAACCA
1 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGATAATTTTGTAAACTGAGGGTAAAACG
* * **
12719885 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTGTAAACTG
66 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAA-TG
* *
12719928 AGGGTAAAACGGTAATTCTATAAATCGAGTGTAAAAT-AGTAATTTTGTAAACTGAGGTTAAAAC
1 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGA-TAATTTTGTAAACTGAGGGTAAAAC
* *
12719992 GGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTATAAATTG
65 GGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAA-TG
*
12720036 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACTG-TAATTCTGTAAACTGAGGGTAAAAC
1 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA-TGATAATTTTGTAAACTGAGGGTAAAAC
* *
12720100 GGTAATTTTAAAAAAATCGAGGGTAAAACGGTAATTCTGTAAATCG
65 GGTAATTCT--ATAAATCGAGGGTAAAACGGTAATTCTGTAAAT-G
* *
12720146 AGGGTAAAACGGTAATTATGTAAATCGAG
1 AGGGTAAAACGGTAATTCTATAAATCGAG
12720175 ATTATTTTGG
Statistics
Matches: 219, Mismatches: 22, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
107 1 0.00
108 159 0.73
109 2 0.01
110 57 0.26
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (107 bp):
AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGATAATTTTGTAAACTGAGGGTAAAACG
GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATG
Found at i:12720408 original size:17 final size:17
Alignment explanation
Indices: 12720388--12720431 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
12720378 AACTTATCCA
*
12720388 ATTGGGCCCGTAGGCCC
1 ATTGGGCCCATAGGCCC
**
12720405 ATTGGGCCCATAGGCTT
1 ATTGGGCCCATAGGCCC
12720422 ATTGGGCCCA
1 ATTGGGCCCA
12720432 CATGGCCCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.16, C:0.30, G:0.32, T:0.23
Consensus pattern (17 bp):
ATTGGGCCCATAGGCCC
Found at i:12722200 original size:6 final size:6
Alignment explanation
Indices: 12722189--12722369 Score: 160
Period size: 6 Copynumber: 29.8 Consensus size: 6
12722179 ACCAAAAATG
*
12722189 AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT AGTAA-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC
* *
12722237 AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* * *
12722286 AGTAA-C AGAATC AGAATC AGAATT AGTATT AGTAA-C AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC
* *
12722334 AGAATC AGAATT ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
12722370 GTGAATGCAA
Statistics
Matches: 145, Mismatches: 14, Indels: 32
0.76 0.07 0.17
Matches are distributed among these distances:
5 11 0.08
6 121 0.83
7 10 0.07
8 3 0.02
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:12722258 original size:85 final size:85
Alignment explanation
Indices: 12722167--12722369 Score: 302
Period size: 85 Copynumber: 2.4 Consensus size: 85
12722157 AAGAAACATT
*
12722167 ATCAGAATT-GG-AACCAAAAATGAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATAT
1 ATCAGAATTAGGTAA-C-AAAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATAT
12722230 TAGTAACAGAATCAGAATCAGA
64 TAGTAACAGAATCAGAATCAGA
* * * *
12722252 ATCAGAATTAGGTGACAGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATTAGTATTA
1 ATCAGAATTAGGTAACAAAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTA
12722317 GTAACAGAATCAGAATCAGA
66 GTAACAGAATCAGAATCAGA
* * *
12722337 ATCAGAATTACGTGACAGAATCAGAATCAGAAT
1 ATCAGAATTAGGTAACAAAATCAGAATCAGAAT
12722370 GTGAATGCAA
Statistics
Matches: 110, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
85 106 0.96
86 3 0.03
87 1 0.01
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (85 bp):
ATCAGAATTAGGTAACAAAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTA
GTAACAGAATCAGAATCAGA
Found at i:12722550 original size:27 final size:27
Alignment explanation
Indices: 12722487--12722560 Score: 73
Period size: 27 Copynumber: 2.8 Consensus size: 27
12722477 AGCATGGCTG
* *
12722487 CCAGAA-CAGATATCGTGACAGAGTCC
1 CCAGAATCAGATATTGTGGCAGAGTCC
*
12722513 CTAG-ATACAGATATTGTGGCAGAG-CC
1 CCAGAAT-CAGATATTGTGGCAGAGTCC
*
12722539 ACCAGAATCAGATAATGTGGCA
1 -CCAGAATCAGATATTGTGGCA
12722561 AACCCACCTA
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
25 1 0.03
26 5 0.13
27 31 0.79
28 2 0.05
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (27 bp):
CCAGAATCAGATATTGTGGCAGAGTCC
Found at i:12722773 original size:22 final size:22
Alignment explanation
Indices: 12722725--12722783 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
12722715 GTAAATACGT
*
12722725 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
12722747 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
12722769 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
12722784 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:12722950 original size:27 final size:26
Alignment explanation
Indices: 12722871--12722953 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
12722861 TCGATCGGTC
* * * *
12722871 AACAGATATTGTGACAGAGTCACTAA
1 AACAGATATTGTGCCAGAGCCACCAG
12722897 ATACAGATATTGTGCCAGAGCCACCAG
1 A-ACAGATATTGTGCCAGAGCCACCAG
* *
12722924 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGCCAGAGCCACCAG
12722951 AAC
1 AAC
12722954 GCTTCCTCCG
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 8 0.16
27 41 0.84
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGCCAGAGCCACCAG
Found at i:12723182 original size:27 final size:27
Alignment explanation
Indices: 12723152--12723347 Score: 203
Period size: 27 Copynumber: 7.3 Consensus size: 27
12723142 GGGGCAAAAT
* * * *
12723152 GGTAATTTTACCCCACAACGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
12723179 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
12723206 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
12723233 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
12723260 GGTAATTATATCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
12723287 AGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
12723314 AGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
12723341 AGTAATT
1 GGTAATT
12723348 TCACAATCAA
Statistics
Matches: 143, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 143 1.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:12723345 original size:54 final size:54
Alignment explanation
Indices: 12723152--12723347 Score: 232
Period size: 54 Copynumber: 3.6 Consensus size: 54
12723142 GGGGCAAAAT
* * * * *
12723152 GGTAATTTTACCCCACAACGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* *
12723206 GGTATTTCTACCCTACAAGGGTATTTC-GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTC
* * * * * *
12723260 GGTAATTATATCCTATAAGGGTATTTTAGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* * *
12723314 AGAAATTCTACCCTACAGGGGTATTTCAGTAATT
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATT
12723348 TCACAATCAA
Statistics
Matches: 119, Mismatches: 21, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
53 1 0.01
54 117 0.98
55 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
Found at i:12723382 original size:27 final size:27
Alignment explanation
Indices: 12723352--12723775 Score: 235
Period size: 27 Copynumber: 15.3 Consensus size: 27
12723342 GTAATTTCAC
* *
12723352 AATCAAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
12723379 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
12723406 AA-CTGAGGGTAAACCAGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
12723433 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
12723460 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
12723487 AA-CTGAGGGTAAAACAGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
12723514 AATCGAGGGTAAAA---TAATT-TG-A
1 AATCGAGGGTAAAACGGTAATTCTGTA
** * **
12723536 AAT--A--GTAATTCTGTAAACTGTGGGTA
1 AATCGAGGGTAAAACGGT-AA-T-TCTGTA
* ** * * *
12723562 AAACGGCAATTCTGTGAATCGAGGGTAAAACAGTAAT-TTTACA
1 AATC-G--A--GGGT-AA--AACGGT---A-A-T--TCTGT--A
* *
12723605 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** *
12723632 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * **
12723659 AA-CTGAGGGTAAAACTGTAATTTTAAAAA
1 AATC-GAGGGTAAAACGGTAATTCT--GTA
*
12723688 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
12723715 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
12723742 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
12723769 AATCGAG
1 AATCGAG
12723776 AGTACTTTGG
Statistics
Matches: 318, Mismatches: 44, Indels: 70
0.74 0.10 0.16
Matches are distributed among these distances:
18 4 0.01
20 1 0.00
21 1 0.00
22 6 0.02
23 2 0.01
24 6 0.02
25 1 0.00
26 6 0.02
27 233 0.73
28 3 0.01
29 24 0.08
30 2 0.01
31 2 0.01
32 1 0.00
35 6 0.02
36 2 0.01
37 2 0.01
38 4 0.01
40 3 0.01
41 3 0.01
42 2 0.01
43 4 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:12723433 original size:54 final size:54
Alignment explanation
Indices: 12723352--12723775 Score: 329
Period size: 54 Copynumber: 8.1 Consensus size: 54
12723342 GTAATTTCAC
* ** * *
12723352 AATCAAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATA
* * * * *
12723406 AA-CTGAGGGTAAACCAGTAATTTTGTAAATCAAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATA
*
12723460 AATCGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAAC-AGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTAAATC-GAGGGTAAAACGA-TAATTCTATA
*
12723514 AATCGAGGGT-AAA-A-TAATT-TG--AA---A---TA----G-TAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATA
* * * * * *
12723551 AACT-GTGGGTAAAACGGCAATTCTGTGAATCGAGGGTAAAAC-AGTAATTTTACA
1 AA-TCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTATA
** * *
12723605 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAA-TAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTCTATA
* * ** *
12723659 AA-CTGAGGGTAAAACTGTAATTTTAAAAAAATCGAGGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACAGTAATTCT--GTAAATCGAGGGTAAAACGATAATTCTATA
* * *
12723715 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATA
12723769 AATCGAG
1 AATCGAG
12723776 AGTACTTTGG
Statistics
Matches: 300, Mismatches: 39, Indels: 62
0.75 0.10 0.15
Matches are distributed among these distances:
37 16 0.05
38 4 0.01
40 4 0.01
41 2 0.01
42 2 0.01
43 2 0.01
45 1 0.00
46 1 0.00
48 2 0.01
49 2 0.01
50 2 0.01
51 5 0.02
52 1 0.00
53 7 0.02
54 201 0.67
55 1 0.00
56 46 0.15
57 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (54 bp):
AATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATA
Found at i:12723545 original size:64 final size:64
Alignment explanation
Indices: 12723471--12723591 Score: 197
Period size: 64 Copynumber: 1.9 Consensus size: 64
12723461 ATCGAGGGTA
*
12723471 AAATAGTAATTCTGTAAACTGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATAATTTG
1 AAATAGTAATTCTGTAAACTGAGGGTAAAACAGCAATTCTATAAATCGAGGGTAAAATAATTTG
* * * *
12723535 AAATAGTAATTCTGTAAACTGTGGGTAAAACGGCAATTCTGTGAATCGAGGGTAAAA
1 AAATAGTAATTCTGTAAACTGAGGGTAAAACAGCAATTCTATAAATCGAGGGTAAAA
12723592 CAGTAATTTT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 52 1.00
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.28
Consensus pattern (64 bp):
AAATAGTAATTCTGTAAACTGAGGGTAAAACAGCAATTCTATAAATCGAGGGTAAAATAATTTG
Found at i:12723561 original size:91 final size:91
Alignment explanation
Indices: 12723449--12723619 Score: 247
Period size: 91 Copynumber: 1.9 Consensus size: 91
12723439 GGGTAAAACG
* * *
12723449 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAACAGTAATTCTAT
1 GTAATTCTGTAAATCGAGGGTAAAACAGCAATTCTGTAAATC-GAGGGTAAAACAGTAATTCTAC
12723513 AAATCGAGGGTAAAATAATTTGAAATA
65 AAATCGAGGGTAAAATAATTTGAAATA
* * * *
12723540 GTAATTCTGTAAA-CTGTGGGTAAAACGGCAATTCTGTGAATCGAGGGTAAAACAGTAATTTTAC
1 GTAATTCTGTAAATC-GAGGGTAAAACAGCAATTCTGTAAATCGAGGGTAAAACAGTAATTCTAC
12723604 AAATCGAGGGTAAAAT
65 AAATCGAGGGTAAAAT
12723620 GGTAATTCTA
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
90 1 0.01
91 69 0.97
92 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (91 bp):
GTAATTCTGTAAATCGAGGGTAAAACAGCAATTCTGTAAATCGAGGGTAAAACAGTAATTCTACA
AATCGAGGGTAAAATAATTTGAAATA
Found at i:12723629 original size:118 final size:112
Alignment explanation
Indices: 12723438--12723755 Score: 360
Period size: 118 Copynumber: 2.8 Consensus size: 112
12723428 TTGTAAATCA
* *
12723438 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACT-GAGGGTAAAAC
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATT-T-TAAAATCGAGGGTAAAAC
* *
12723502 AGTAATTCTATAAATCGAGGGTAAAATAATTTGAAATAGTAATTCTGTAAACTG
64 GGTAATTCTATAAATCGAGGGTAAAAT-A----AAATAGTAATTCTATAAACTG
* * * *
12723556 TGGGTAAAACGGCAATTCTGTGAATCGAGGGTAAAACAGTAATTTTACAAATCGAGGGTAAAATG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTTA-AAATCGAGGGTAAAACG
12723621 GTAATTCTATAAATCGAGGG-----TAAAATAGTAATTCTATAAACTG
65 GTAATTCTATAAATCGAGGGTAAAATAAAATAGTAATTCTATAAACTG
* * ** * *
12723664 AGGGTAAAACTGTAATTTTAAAAAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
1 AGGGTAAAACGGTAATTCT--GTAAATCGAGGGTAAAACAGTAATTTTA-AAATCGAGGGTAAAA
*
12723729 CGGTAATTCTGTAAATCGAGGGTAAAA
63 CGGTAATTCTATAAATCGAGGGTAAAA
12723756 CGGTAATTCT
Statistics
Matches: 171, Mismatches: 20, Indels: 21
0.81 0.09 0.10
Matches are distributed among these distances:
108 35 0.20
110 58 0.34
112 1 0.01
113 1 0.01
116 2 0.01
117 4 0.02
118 70 0.41
ACGTcount: A:0.42, C:0.09, G:0.22, T:0.27
Consensus pattern (112 bp):
AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTTAAAATCGAGGGTAAAACGG
TAATTCTATAAATCGAGGGTAAAATAAAATAGTAATTCTATAAACTG
Found at i:12723654 original size:172 final size:173
Alignment explanation
Indices: 12723363--12723701 Score: 486
Period size: 172 Copynumber: 2.0 Consensus size: 173
12723353 ATCAAGGGTA
* * * *
12723363 AAATGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTAAACCAGTAATT
1 AAATAGTAATTCTGTAAATCGAGGGTAAAACGACAATTCTGTAAACTGAGGGTAAAACAGTAATT
** * *
12723428 TTGTAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGA
66 TTACAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATAAACTGA
*
12723493 GGGTAAAACAGTAATTCT-ATAAATCGAGGGTAAAATAATTTG
131 GGGTAAAACAGTAATTCTAAAAAATCGAGGGTAAAATAATTTG
* * *
12723535 AAATAGTAATTCTGTAAA-CTGTGGGTAAAACGGCAATTCTGTGAA-TCGAGGGTAAAACAGTAA
1 AAATAGTAATTCTGTAAATC-GAGGGTAAAACGACAATTCTGTAAACT-GAGGGTAAAACAGTAA
* *
12723598 TTTTACAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATAAACT
64 TTTTACAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATAAACT
* *
12723663 GAGGGTAAAACTGTAATTTTAAAAAAATCGAGGGTAAAA
129 GAGGGTAAAACAGTAATTCT-AAAAAATCGAGGGTAAAA
12723702 CGGTAATTCT
Statistics
Matches: 147, Mismatches: 16, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
171 2 0.01
172 129 0.88
174 16 0.11
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.28
Consensus pattern (173 bp):
AAATAGTAATTCTGTAAATCGAGGGTAAAACGACAATTCTGTAAACTGAGGGTAAAACAGTAATT
TTACAAATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATAAACTGA
GGGTAAAACAGTAATTCTAAAAAATCGAGGGTAAAATAATTTG
Found at i:12723659 original size:145 final size:143
Alignment explanation
Indices: 12723395--12723775 Score: 451
Period size: 145 Copynumber: 2.7 Consensus size: 143
12723385 GGGTAAAACG
* * * * *
12723395 ATAATTTTGTAAACTGAGGGTAAACCAGTAATTTTGTAAATCAAGGGTAAAACGGTAATTCTGTA
1 ATAATTCTGTAAACTG-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTA
*
12723460 AATCGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAACAGTAATTCTATAAA-TCGAGGG
65 AATCGAGGGTAAAATGGTAATTCTGTAAATC-GAGGGTAAAACAGTAATTCTATAAACT-GAGGG
12723523 TAAAA-TAATTTGAAA
128 TAAAACTAATTTGAAA
* * * * *
12723538 TAGTAATTCTGTAAACTGTGGGTAAAACGGCAATTCTGTGAATCGAGGGTAAAACAGTAATTTTA
1 -A-TAATTCTGTAAACTG-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTG
* * *
12723603 CAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATAAACTGAGGG
63 TAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAACTGAGGG
*
12723668 TAAAACTGTAATTTTAAA
128 TAAAAC--TAATTTGAAA
* *
12723686 A-AAATC-G---A---GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAA
1 ATAATTCTGTAAACTGGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAA
*
12723743 ATCGAGGGTAAAACGGTAATTCTGTAAATCGAG
66 ATCGAGGGTAAAATGGTAATTCTGTAAATCGAG
12723776 AGTACTTTGG
Statistics
Matches: 205, Mismatches: 26, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
137 73 0.36
141 1 0.00
144 2 0.01
145 117 0.57
146 2 0.01
147 1 0.00
148 9 0.04
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (143 bp):
ATAATTCTGTAAACTGGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAA
ATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAACTGAGGGTAA
AACTAATTTGAAA
Found at i:12723721 original size:83 final size:81
Alignment explanation
Indices: 12723540--12723763 Score: 281
Period size: 83 Copynumber: 2.7 Consensus size: 81
12723530 ATTTGAAATA
* * * * * * *
12723540 GTAATTCTGTAAA-CTGTGGGTAAAACGGCAATTCTGTGAATCGAGGGTAAAACAGTAATTTTAC
1 GTAATTCTATAAATC-GAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACAGTAATTTTAA
*
12723604 AAATCGAGGGTAAAATG
65 AAATCGAGGGTAAAACG
* *
12723621 GTAATTCTATAAATCGAGGGTAAAATAGTAATTCTATAAA-CTGAGGGTAAAACTGTAATTTTAA
1 GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATC-GAGGGTAAAACAGTAATTTT--
12723685 AAAAATCGAGGGTAAAACG
63 AAAAATCGAGGGTAAAACG
* * *
12723704 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATT
1 GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACAGTAATT
12723764 CTGTAAATCG
Statistics
Matches: 124, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
80 1 0.01
81 50 0.40
82 1 0.01
83 71 0.57
84 1 0.01
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (81 bp):
GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACAGTAATTTTAAA
AATCGAGGGTAAAACG
Found at i:12723726 original size:110 final size:108
Alignment explanation
Indices: 12723535--12723770 Score: 319
Period size: 110 Copynumber: 2.2 Consensus size: 108
12723525 AAATAATTTG
* ***
12723535 AAATAGTAATTCTGTAAACTGTGGGTAAAACGGCAATTCTGTGAATCGAGGGTAAAACAGTAATT
1 AAATAGTAATTCTGTAAACTGAGGGTAAAACGGCAATTCTAAAAATCGAGGGTAAAACAGTAATT
* *
12723600 TTACAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
66 CTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
* * * * *
12723643 AAATAGTAATTCTATAAACTGAGGGTAAAACTGTAATTTTAAAAAAATCGAGGGTAAAACGGTAA
1 AAATAGTAATTCTGTAAACTGAGGGTAAAACGGCAATTCT--AAAAATCGAGGGTAAAACAGTAA
* *
12723708 TTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
64 TTCTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
**
12723753 AAACGGTAATTCTGTAAA
1 AAATAGTAATTCTGTAAA
12723771 TCGAGAGTAC
Statistics
Matches: 110, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
108 35 0.32
110 75 0.68
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.28
Consensus pattern (108 bp):
AAATAGTAATTCTGTAAACTGAGGGTAAAACGGCAATTCTAAAAATCGAGGGTAAAACAGTAATT
CTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
Found at i:12723790 original size:27 final size:27
Alignment explanation
Indices: 12723540--12723775 Score: 269
Period size: 27 Copynumber: 8.7 Consensus size: 27
12723530 ATTTGAAATA
*
12723540 GTAATTCTGTAAA-CTGTGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
* * *
12723567 GCAATTCTGTGAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* ** *
12723594 GTAATTTTACAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
12723621 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
12723648 GTAATTCTATAAA-CTGAGGGTAAAACT
1 GTAATTCTGTAAATC-GAGGGTAAAACG
* **
12723675 GTAATTTTAAAAAAATCGAGGGTAAAACG
1 GTAATTCT--GTAAATCGAGGGTAAAACG
*
12723704 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
12723731 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
12723758 GTAATTCTGTAAATCGAG
1 GTAATTCTGTAAATCGAG
12723776 AGTACTTTGG
Statistics
Matches: 182, Mismatches: 22, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
26 1 0.01
27 157 0.86
28 1 0.01
29 22 0.12
30 1 0.01
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:12725207 original size:17 final size:17
Alignment explanation
Indices: 12725187--12725219 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
12725177 TTTATGAATT
12725187 ATATAATTTA-TGATGAG
1 ATAT-ATTTATTGATGAG
12725204 ATATATTTATTGATGA
1 ATATATTTATTGATGA
12725220 ATTGAGAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.39, C:0.00, G:0.15, T:0.45
Consensus pattern (17 bp):
ATATATTTATTGATGAG
Found at i:12748973 original size:24 final size:24
Alignment explanation
Indices: 12748941--12748988 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
12748931 CAACAACTTT
12748941 AGATAATATGAGATATGATCGAAA
1 AGATAATATGAGATATGATCGAAA
12748965 AGATAATATGAGATATGATCGAAA
1 AGATAATATGAGATATGATCGAAA
12748989 TTTATCAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.04, G:0.21, T:0.25
Consensus pattern (24 bp):
AGATAATATGAGATATGATCGAAA
Found at i:12755595 original size:6 final size:6
Alignment explanation
Indices: 12755578--12755627 Score: 91
Period size: 6 Copynumber: 8.2 Consensus size: 6
12755568 ATTAAAATAC
12755578 TTAAATA TTAAAA TTAAAA TTAAAA TTAAAA TTAAAA TTAAAA TTAAAA
1 TTAAA-A TTAAAA TTAAAA TTAAAA TTAAAA TTAAAA TTAAAA TTAAAA
12755627 T
1 T
12755628 ATTTGTTTAT
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
6 38 0.88
7 5 0.12
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (6 bp):
TTAAAA
Found at i:12760678 original size:33 final size:33
Alignment explanation
Indices: 12760636--12760702 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
12760626 TTAATGTTCT
12760636 CTTGTAGTTTCGTTCGACACTTAGTCAAACTGG
1 CTTGTAGTTTCGTTCGACACTTAGTCAAACTGG
* *
12760669 CTTGTAGTTTCGTTTGACACTTAGTCAAATTGG
1 CTTGTAGTTTCGTTCGACACTTAGTCAAACTGG
12760702 C
1 C
12760703 CTTAAATTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.39
Consensus pattern (33 bp):
CTTGTAGTTTCGTTCGACACTTAGTCAAACTGG
Found at i:12762774 original size:16 final size:16
Alignment explanation
Indices: 12762755--12762788 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
12762745 TAAAAACTTC
12762755 TAACACCCCTAACTCG
1 TAACACCCCTAACTCG
12762771 TAACACCCCTAACTCG
1 TAACACCCCTAACTCG
12762787 TA
1 TA
12762789 TACATCGCCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.32, C:0.41, G:0.06, T:0.21
Consensus pattern (16 bp):
TAACACCCCTAACTCG
Found at i:12764210 original size:42 final size:43
Alignment explanation
Indices: 12764160--12764259 Score: 114
Period size: 44 Copynumber: 2.3 Consensus size: 43
12764150 TCCTAGATAG
* *
12764160 GGTCTTACACGAAATCA-AA-TACAATGCCAATGTCTCAGACAT
1 GGTCTTACACGAAATCATAAGT-CAATGCCAACGTCCCAGACAT
* * *
12764202 GGTTTTACACGTAAATCATAAGTCGATGCCAACGTCCCAGACGT
1 GGTCTTACACG-AAATCATAAGTCAATGCCAACGTCCCAGACAT
*
12764246 GGTCTTACATGAAA
1 GGTCTTACACGAAA
12764260 ACACATATCA
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
42 10 0.21
43 9 0.19
44 28 0.58
45 1 0.02
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (43 bp):
GGTCTTACACGAAATCATAAGTCAATGCCAACGTCCCAGACAT
Found at i:12766649 original size:16 final size:16
Alignment explanation
Indices: 12766624--12766657 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
12766614 AAAAGTAAGA
*
12766624 TCATAAATTCATTCAT
1 TCATAAATTCAATCAT
*
12766640 TCATATATTCAATCAT
1 TCATAAATTCAATCAT
12766656 TC
1 TC
12766658 TAATCATAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.21, G:0.00, T:0.44
Consensus pattern (16 bp):
TCATAAATTCAATCAT
Found at i:12766854 original size:29 final size:30
Alignment explanation
Indices: 12766782--12766952 Score: 150
Period size: 29 Copynumber: 5.8 Consensus size: 30
12766772 GAAGAAGAGA
*
12766782 GGCAAAACTATAAAATCTGGAAAAACCAAT
1 GGCAAAACTATAAAATCTAGAAAAACCAAT
* *
12766812 GGCAGAACTATAAAATCTAGAATAA-CAAT
1 GGCAAAACTATAAAATCTAGAAAAACCAAT
* * *
12766841 TGAAAAACTGTAAAATCTAGAAAAACCAAGT
1 GGCAAAACTATAAAATCTAGAAAAACCAA-T
* * * * * *
12766872 GGCGAAACTATAAAATTTGGAATAA-TAGT
1 GGCAAAACTATAAAATCTAGAAAAACCAAT
* * *
12766901 GGCAAAACTGTGAAATCTAG-AAAACCAGT
1 GGCAAAACTATAAAATCTAGAAAAACCAAT
* * *
12766930 AGCAAAACTGTAAAATCTGGAAA
1 GGCAAAACTATAAAATCTAGAAA
12766953 CTGTTTGAGA
Statistics
Matches: 110, Mismatches: 27, Indels: 8
0.76 0.19 0.06
Matches are distributed among these distances:
28 3 0.03
29 60 0.55
30 28 0.25
31 19 0.17
ACGTcount: A:0.50, C:0.13, G:0.16, T:0.20
Consensus pattern (30 bp):
GGCAAAACTATAAAATCTAGAAAAACCAAT
Found at i:12766908 original size:60 final size:59
Alignment explanation
Indices: 12766782--12766951 Score: 193
Period size: 60 Copynumber: 2.9 Consensus size: 59
12766772 GAAGAAGAGA
* * *
12766782 GGCAAAACTATAAAATCTGGAAAAACCAA-TGGCAGAACTATAAAATCTAGAATAACAAT
1 GGCAAAACTGTAAAATCTAGAAAAACCAAGTGGCA-AACTATAAAATCTGGAATAACAAT
* * * * *
12766841 TGAAAAACTGTAAAATCTAGAAAAACCAAGTGGCGAAACTATAAAATTTGGAATAATAGT
1 GGCAAAACTGTAAAATCTAGAAAAACCAAGTGGC-AAACTATAAAATCTGGAATAACAAT
* * *
12766901 GGCAAAACTGTGAAATCTAG-AAAACC-AGTAGCAAAACTGTAAAATCTGGAA
1 GGCAAAACTGTAAAATCTAGAAAAACCAAGTGGC-AAACTATAAAATCTGGAA
12766952 ACTGTTTGAG
Statistics
Matches: 94, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
58 21 0.22
59 31 0.33
60 41 0.44
61 1 0.01
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.20
Consensus pattern (59 bp):
GGCAAAACTGTAAAATCTAGAAAAACCAAGTGGCAAACTATAAAATCTGGAATAACAAT
Found at i:12766938 original size:89 final size:90
Alignment explanation
Indices: 12766786--12766952 Score: 212
Period size: 89 Copynumber: 1.9 Consensus size: 90
12766776 AAGAGAGGCA
* *
12766786 AAACTATAAAATCTGGAAAAACCAATGGCAGAACTATAAAATCTAGAATAACAATTGAAAAACTG
1 AAACTATAAAATCTGGAAAAACCAATGGCAAAACTATAAAATCTAGAATAACAATAGAAAAACTG
12766851 TAAAATCTAGAAAAACCAAGTGGCG
66 TAAAATCTAGAAAAACCAAGTGGCG
* * * * * * * *
12766876 AAACTATAAAATTTGGAATAA-TAGTGGCAAAACTGTGAAATCTAGAA-AACCAGTAGCAAAACT
1 AAACTATAAAATCTGGAAAAACCAATGGCAAAACTATAAAATCTAGAATAA-CAATAGAAAAACT
*
12766939 GTAAAATCTGGAAA
65 GTAAAATCTAGAAA
12766953 CTGTTTGAGA
Statistics
Matches: 65, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
88 2 0.03
89 44 0.68
90 19 0.29
ACGTcount: A:0.51, C:0.13, G:0.16, T:0.20
Consensus pattern (90 bp):
AAACTATAAAATCTGGAAAAACCAATGGCAAAACTATAAAATCTAGAATAACAATAGAAAAACTG
TAAAATCTAGAAAAACCAAGTGGCG
Found at i:12767418 original size:32 final size:33
Alignment explanation
Indices: 12767382--12767448 Score: 82
Period size: 33 Copynumber: 2.1 Consensus size: 33
12767372 AAGAAAGATA
* *
12767382 AATTCTA-TTCGAATTTGAAAATGAGTAATTTG
1 AATTCTAGTTAGAATTTGAAAAGGAGTAATTTG
* * *
12767414 AATTCTAGTTAGGATTTTAAAAGGATTAATTTG
1 AATTCTAGTTAGAATTTGAAAAGGAGTAATTTG
12767447 AA
1 AA
12767449 ATAAATTAAG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
32 7 0.24
33 22 0.76
ACGTcount: A:0.39, C:0.04, G:0.16, T:0.40
Consensus pattern (33 bp):
AATTCTAGTTAGAATTTGAAAAGGAGTAATTTG
Found at i:12775536 original size:34 final size:34
Alignment explanation
Indices: 12775493--12775559 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
12775483 TTTACGAGTT
12775493 TGATTTACGGGAATGGAGTCCCGGGAATGCATTC
1 TGATTTACGGGAATGGAGTCCCGGGAATGCATTC
12775527 TGATTTACGGGAATGGAGTCCCGGGAATGCATT
1 TGATTTACGGGAATGGAGTCCCGGGAATGCATT
12775560 TTTCGACACC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.24, C:0.16, G:0.33, T:0.27
Consensus pattern (34 bp):
TGATTTACGGGAATGGAGTCCCGGGAATGCATTC
Found at i:12776627 original size:16 final size:16
Alignment explanation
Indices: 12776606--12776637 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
12776596 GGTCAATTTG
*
12776606 ACTTGTTGGACCTACA
1 ACTTGTTAGACCTACA
12776622 ACTTGTTAGACCTACA
1 ACTTGTTAGACCTACA
12776638 GGCTAACATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (16 bp):
ACTTGTTAGACCTACA
Found at i:12778657 original size:2 final size:2
Alignment explanation
Indices: 12778650--12778677 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
12778640 ATTCTTAATC
12778650 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12778678 TTCGGGATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:12780475 original size:108 final size:108
Alignment explanation
Indices: 12780363--12780575 Score: 338
Period size: 108 Copynumber: 2.0 Consensus size: 108
12780353 GAGGGTTAAA
* *
12780363 TTATTAACTTCTTAAAAA-TTAATACAAAATTGTAGAATGTATAAACATTGAAATCTATTAAACC
1 TTATT-ACTTCTTAAAAAGTTAATACAAAATTGTAGAATGTATAAACATTGAAAGCCATTAAACC
12780427 AATCAAAAAGTAGTATAAATTAATGAAAAAAGTGAACATCAAAT
65 AATCAAAAAGTAGTATAAATTAATGAAAAAAGTGAACATCAAAT
* * * * * *
12780471 TTATTATTTTTTAAAAAGTTATTACAAAATTTTAGAATGTATAAACATTGAAAGCCATTATATCA
1 TTATTACTTCTTAAAAAGTTAATACAAAATTGTAGAATGTATAAACATTGAAAGCCATTAAACCA
12780536 ATCAAAAAGTAGTATAAATTAATGAAAAAAGTGAACATCA
66 ATCAAAAAGTAGTATAAATTAATGAAAAAAGTGAACATCA
12780576 TCAAACTTTT
Statistics
Matches: 96, Mismatches: 8, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
107 10 0.10
108 86 0.90
ACGTcount: A:0.50, C:0.08, G:0.09, T:0.32
Consensus pattern (108 bp):
TTATTACTTCTTAAAAAGTTAATACAAAATTGTAGAATGTATAAACATTGAAAGCCATTAAACCA
ATCAAAAAGTAGTATAAATTAATGAAAAAAGTGAACATCAAAT
Found at i:12782837 original size:17 final size:17
Alignment explanation
Indices: 12782815--12782850 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
12782805 TTTACTGATC
*
12782815 AAATTCATACTCGATAA
1 AAATTCATACTAGATAA
12782832 AAATTCATACTAGATAA
1 AAATTCATACTAGATAA
12782849 AA
1 AA
12782851 CAAACCAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.53, C:0.14, G:0.06, T:0.28
Consensus pattern (17 bp):
AAATTCATACTAGATAA
Found at i:12785304 original size:30 final size:30
Alignment explanation
Indices: 12785270--12785329 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
12785260 AAAATGGAGG
12785270 TAAACCAAATAAGAAAAAAAGAACAACACA
1 TAAACCAAATAAGAAAAAAAGAACAACACA
*
12785300 TAAACCAAATAAGCAAAAAAGAACAACACA
1 TAAACCAAATAAGAAAAAAAGAACAACACA
12785330 CATCATCGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.68, C:0.18, G:0.07, T:0.07
Consensus pattern (30 bp):
TAAACCAAATAAGAAAAAAAGAACAACACA
Found at i:12790953 original size:21 final size:22
Alignment explanation
Indices: 12790927--12790967 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
12790917 CTCTTAATAC
12790927 AGGGGC-ACACGCCCGTGTGGG
1 AGGGGCAACACGCCCGTGTGGG
*
12790948 AGGGGCAACACGTCCGTGTG
1 AGGGGCAACACGCCCGTGTG
12790968 ACATTCAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.17, C:0.27, G:0.44, T:0.12
Consensus pattern (22 bp):
AGGGGCAACACGCCCGTGTGGG
Found at i:12794030 original size:20 final size:19
Alignment explanation
Indices: 12793990--12794031 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
12793980 CTTTCCAATT
*
12793990 TTTCTTACTTTCATTTGCA
1 TTTCTTACTTTCATTTCCA
12794009 TTTCATTACTTTCCA-TTCCA
1 TTTC-TTACTTT-CATTTCCA
12794029 TTT
1 TTT
12794032 ACTTTCTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 4 0.20
20 14 0.70
21 2 0.10
ACGTcount: A:0.17, C:0.24, G:0.02, T:0.57
Consensus pattern (19 bp):
TTTCTTACTTTCATTTCCA
Found at i:12795447 original size:46 final size:46
Alignment explanation
Indices: 12795176--12795448 Score: 379
Period size: 46 Copynumber: 6.0 Consensus size: 46
12795166 TTATCTTTGA
* * * * * *
12795176 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
* * ** ***
12795222 CAGGTTGCCATGGTATCTTTTAACCATGGTCTTATTCA-TTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
12795267 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
12795313 CCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
12795359 CATGTTGCCATGGTATCTTTTAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
12795405 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
12795449 TTCAGAAAGC
Statistics
Matches: 204, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
44 3 0.01
45 36 0.18
46 165 0.81
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:12801350 original size:17 final size:16
Alignment explanation
Indices: 12801303--12801351 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 16
12801293 AGGAATATAC
12801303 TAATAATGATATGAATAA
1 TAATAAT-ATAT-AATAA
*
12801321 TAGTAATAGTATAATAA
1 TAATAATA-TATAATAA
12801338 TAATAAATATATAA
1 TAAT-AATATATAA
12801352 AAAACAGAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 14 0.52
18 13 0.48
ACGTcount: A:0.57, C:0.00, G:0.08, T:0.35
Consensus pattern (16 bp):
TAATAATATATAATAA
Found at i:12803162 original size:44 final size:44
Alignment explanation
Indices: 12803052--12803163 Score: 206
Period size: 44 Copynumber: 2.5 Consensus size: 44
12803042 TCCTTGATCA
*
12803052 GCTCCACTGCAACTTCAGGGAGACAAGACATGCAACTTTGACCT
1 GCTCCACTGCAACTTCAGGGAGGCAAGACATGCAACTTTGACCT
*
12803096 GCTCCACTGCAACTTCAGGGAGGCAAGACTTGCAACTTTGACCT
1 GCTCCACTGCAACTTCAGGGAGGCAAGACATGCAACTTTGACCT
12803140 GCTCCACTGCAACTTCAGGGAGGC
1 GCTCCACTGCAACTTCAGGGAGGC
12803164 CAAATCTGGT
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
44 66 1.00
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (44 bp):
GCTCCACTGCAACTTCAGGGAGGCAAGACATGCAACTTTGACCT
Found at i:12803272 original size:13 final size:13
Alignment explanation
Indices: 12803254--12803290 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
12803244 ATGAATGGAC
12803254 AGTAAAAATAGAA
1 AGTAAAAATAGAA
12803267 AGTAAAAATAGAA
1 AGTAAAAATAGAA
* *
12803280 ATTGAAAATAG
1 AGTAAAAATAG
12803291 CTCAGCACGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.65, C:0.00, G:0.16, T:0.19
Consensus pattern (13 bp):
AGTAAAAATAGAA
Found at i:12803392 original size:74 final size:75
Alignment explanation
Indices: 12803270--12803436 Score: 228
Period size: 74 Copynumber: 2.2 Consensus size: 75
12803260 AATAGAAAGT
* * * * * *
12803270 AAAAATAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTTTCGCAATATGGG
1 AAAAACAGAAATTGAAAATACCTCAGCACGTGACCCAAGGCTCAACTCACCTCTCGCAAAATGAG
*
12803335 TTGATTTTTG
66 TTGATTTATG
* * *
12803345 AAAAACAGAAATT-AAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAAAATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCACGTGACCCAAGGCTCAACTCACCTCTCGCAAAATGAG
12803409 TTGATTTATG
66 TTGATTTATG
*
12803419 AAAAACATAAATTGAAAA
1 AAAAACAGAAATTGAAAA
12803437 GAAACAGAAA
Statistics
Matches: 80, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
74 64 0.80
75 16 0.20
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.24
Consensus pattern (75 bp):
AAAAACAGAAATTGAAAATACCTCAGCACGTGACCCAAGGCTCAACTCACCTCTCGCAAAATGAG
TTGATTTATG
Found at i:12803447 original size:17 final size:17
Alignment explanation
Indices: 12803421--12803453 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
12803411 GATTTATGAA
*
12803421 AAACATAAATTGAAAAG
1 AAACAGAAATTGAAAAG
12803438 AAACAGAAATTGAAAA
1 AAACAGAAATTGAAAA
12803454 CTCCTCAGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.67, C:0.06, G:0.12, T:0.15
Consensus pattern (17 bp):
AAACAGAAATTGAAAAG
Found at i:12803483 original size:166 final size:161
Alignment explanation
Indices: 12803270--12803679 Score: 447
Period size: 166 Copynumber: 2.5 Consensus size: 161
12803260 AATAGAAAGT
* * * * * *
12803270 AAAAATAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTTTCGCAATATGGG
1 AAAAACAGAAATTGAAAATACCTCAGCA-GTGAGCCGAGGTTCAACTCACCTCTCGCAATATGAG
*
12803335 TTGATTTTTGAAAAACAGAAATT-AAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTC
65 TTGATTTTTGAAAAA-A-AAATTGAAAATACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTC
* *
12803399 GCAAAATGAGTT-G-ATTTATGAAAA-ACATAAATTG
126 GCAAAATGAATTGGTATTTATGAAAAGA-AGAAATTG
*
12803433 AAAAGAAACAGAAATTGAAAACT-CCTCAGCATGTGAGCCGAGGTTCAACTCACCTCTAGCAATA
1 --AA-AAACAGAAATTGAAAA-TACCTCAGCA-GTGAGCCGAGGTTCAACTCACCTCTCGCAATA
* * *
12803497 TGAGTTGATTTTTTTTGAAAATAAAATTTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCAGC
61 TGAGTTGA---TTTTTGAAAA-AAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACC
* * *
12803562 TCTCGCAATATGAATTGGTTTTTGTGAAAAGAAGAAATTG
122 TCTCGCAAAATGAATTGGTATTTATGAAAAGAAGAAATTG
* * *
12803602 AAAAATAGAAATTGAAATTACCTCAGC-GTG-TCCTGAGGTTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCAGTGAGCC-GAGGTTCAACTCACCTCTCGCAATATGAG
*
12803665 TTGATTTTTGGAAAA
65 TTGATTTTTGAAAAA
12803680 GTAGGAATTA
Statistics
Matches: 211, Mismatches: 22, Indels: 29
0.81 0.08 0.11
Matches are distributed among these distances:
160 1 0.00
161 9 0.04
163 2 0.01
164 35 0.17
165 3 0.01
166 78 0.37
167 37 0.18
168 5 0.02
169 39 0.18
170 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (161 bp):
AAAAACAGAAATTGAAAATACCTCAGCAGTGAGCCGAGGTTCAACTCACCTCTCGCAATATGAGT
TGATTTTTGAAAAAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAAA
ATGAATTGGTATTTATGAAAAGAAGAAATTG
Found at i:12803603 original size:75 final size:77
Alignment explanation
Indices: 12803442--12803605 Score: 192
Period size: 75 Copynumber: 2.2 Consensus size: 77
12803432 GAAAAGAAAC
* * * *
12803442 AGAAATTGAAAACTCCTCAGCATGTGAGCCGAGGTTCAACTCACCTCTAGCAATATGAGTTGATT
1 AGAAATTGAAAACTCCTCAGCA-GTGACCCGAGGCTCAACTCACCTCTAGCAATATGAATTGAGT
* *
12803507 TTTTTTGAAAATA
65 TTTTGTGAAAAGA
* * * *
12803520 A-AATTTGAAAA-TACCTCAGC-GTGCCCCGAGGCTCAACTCAGCTCTCGCAATATGAATTG-GT
1 AGAAATTGAAAACT-CCTCAGCAGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAATTGAGT
12803581 TTTTGTGAAAAGA
65 TTTTGTGAAAAGA
12803594 AGAAATTGAAAA
1 AGAAATTGAAAA
12803606 ATAGAAATTG
Statistics
Matches: 73, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
74 13 0.18
75 42 0.58
76 1 0.01
77 16 0.22
78 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (77 bp):
AGAAATTGAAAACTCCTCAGCAGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAATTGAGTT
TTTGTGAAAAGA
Found at i:12803673 original size:89 final size:87
Alignment explanation
Indices: 12803514--12803704 Score: 258
Period size: 89 Copynumber: 2.2 Consensus size: 87
12803504 ATTTTTTTTG
*
12803514 AAAATAAAATTTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCAGCTCTCGCAATATGAATTG
1 AAAATAAAATTTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAATTG
*
12803579 GTTTTTGTGAAAAGAAGAAATTGA
66 ATTTTTG-GAAAAGAAGAAATT-A
* * * * *
12803603 AAAATAGAAA-TTGAAATTACCTCAGCGTGTCCTGAGGTTCAACTCACCTCTCGCAATATGAGTT
1 AAAATA-AAATTTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAATT
* *
12803667 GATTTTTGGAAAAGTAGGAATTA
65 GATTTTTGGAAAAGAAGAAATTA
*
12803690 AAAACAAAATTTGAA
1 AAAATAAAATTTGAA
12803705 CAAAAGAATT
Statistics
Matches: 90, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
86 3 0.03
87 11 0.12
88 12 0.13
89 61 0.68
90 3 0.03
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.27
Consensus pattern (87 bp):
AAAATAAAATTTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAATTG
ATTTTTGGAAAAGAAGAAATTA
Found at i:12809156 original size:61 final size:61
Alignment explanation
Indices: 12809061--12809179 Score: 238
Period size: 61 Copynumber: 2.0 Consensus size: 61
12809051 TTCTACTGCG
12809061 TCTTTACTCACTTCGATGTATGGTGCGTCGGTATAAATAGATGCTACAATGTCTTCTTGCA
1 TCTTTACTCACTTCGATGTATGGTGCGTCGGTATAAATAGATGCTACAATGTCTTCTTGCA
12809122 TCTTTACTCACTTCGATGTATGGTGCGTCGGTATAAATAGATGCTACAATGTCTTCTT
1 TCTTTACTCACTTCGATGTATGGTGCGTCGGTATAAATAGATGCTACAATGTCTTCTT
12809180 CTCCCTCGAC
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.39
Consensus pattern (61 bp):
TCTTTACTCACTTCGATGTATGGTGCGTCGGTATAAATAGATGCTACAATGTCTTCTTGCA
Found at i:12816062 original size:3 final size:3
Alignment explanation
Indices: 12816056--12816093 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
12816046 GACAATTTAG
*
12816056 AAT AAT AAT AAT AAT AAT AAC AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
12816094 ACGTATATAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:12816452 original size:31 final size:30
Alignment explanation
Indices: 12816416--12816474 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
12816406 TATTGAAAAC
* *
12816416 ATATACGTAATATATCTAGAACATATATGAT
1 ATATACATAATATAT-AAGAACATATATGAT
*
12816447 ATATACATAATATATAAGAATATATATG
1 ATATACATAATATATAAGAACATATATG
12816475 TAATAAAGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 11 0.44
31 14 0.56
ACGTcount: A:0.49, C:0.07, G:0.08, T:0.36
Consensus pattern (30 bp):
ATATACATAATATATAAGAACATATATGAT
Found at i:12827973 original size:15 final size:15
Alignment explanation
Indices: 12827953--12827983 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
12827943 ATTCGAATAA
12827953 ACGATTGGTGTAAAT
1 ACGATTGGTGTAAAT
*
12827968 ACGATTGTTGTAAAT
1 ACGATTGGTGTAAAT
12827983 A
1 A
12827984 TCCTTTTGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.35
Consensus pattern (15 bp):
ACGATTGGTGTAAAT
Found at i:12828110 original size:20 final size:20
Alignment explanation
Indices: 12828073--12828119 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
12828063 CTCAAAAAAT
**
12828073 TATAAAAAATTTCTAAAGAA
1 TATAAAAAATTTAAAAAGAA
*
12828093 TATATAAAATTTAAAAAG--
1 TATAAAAAATTTAAAAAGAA
12828111 TATAAAAAA
1 TATAAAAAA
12828120 CTCTAAACTG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
18 8 0.35
20 15 0.65
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (20 bp):
TATAAAAAATTTAAAAAGAA
Found at i:12829656 original size:49 final size:50
Alignment explanation
Indices: 12829584--12829679 Score: 131
Period size: 49 Copynumber: 1.9 Consensus size: 50
12829574 TAAACATTAA
* * *
12829584 AAAAATATTAAAGATGAATATAAAAA-CTTTTAATAAATAAAAAATATAT
1 AAAAATATTAAAGATGAAAATAAAAATATTTTAAAAAATAAAAAATATAT
* * *
12829633 AAAATTATTAAATATTAAAATAAAAATATTTTAAAAAATAAAAAATA
1 AAAAATATTAAAGATGAAAATAAAAATATTTTAAAAAATAAAAAATA
12829680 ATATGGGCGA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
49 22 0.55
50 18 0.45
ACGTcount: A:0.66, C:0.01, G:0.02, T:0.31
Consensus pattern (50 bp):
AAAAATATTAAAGATGAAAATAAAAATATTTTAAAAAATAAAAAATATAT
Found at i:12831339 original size:3 final size:3
Alignment explanation
Indices: 12831331--12831363 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
12831321 CCAAACAAAA
12831331 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
12831364 GCAGATTGGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:12835525 original size:15 final size:16
Alignment explanation
Indices: 12835505--12835534 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
12835495 GAAACCAACT
12835505 CAAAATC-AAATGATC
1 CAAAATCGAAATGATC
12835520 CAAAATCGAAATGAT
1 CAAAATCGAAATGAT
12835535 TCGAACAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.53, C:0.17, G:0.10, T:0.20
Consensus pattern (16 bp):
CAAAATCGAAATGATC
Found at i:12836867 original size:7 final size:8
Alignment explanation
Indices: 12836850--12836878 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
12836840 GAGCTTTGTT
12836850 AAATAAAA
1 AAATAAAA
12836858 AAATAAAA
1 AAATAAAA
12836866 AAATAAAA
1 AAATAAAA
12836874 AAATA
1 AAATA
12836879 TAACACATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (8 bp):
AAATAAAA
Found at i:12839573 original size:49 final size:47
Alignment explanation
Indices: 12839467--12839630 Score: 156
Period size: 49 Copynumber: 3.5 Consensus size: 47
12839457 GATGCCGACA
*
12839467 CCATGTCCCAGACATGGTCTTACACTGGCTAGCACATCAAAGTCGATG
1 CCATGTCCCAGACA-GGTCTTACATTGGCTAGCACATCAAAGTCGATG
** ** * *
12839515 CCATGTCCCAGACAGGTCTTACATTGGCTCTCATCTATTTATGTTGATG
1 CCATGTCCCAGACAGGTCTTACATTGGCTAGCA-C-ATCAAAGTCGATG
* * *
12839564 CCATGTCCCAGACAGGTCTTACATTGAC-A-CACAAC-AAG-CTGACG
1 CCATGTCCCAGACAGGTCTTACATTGGCTAGCACATCAAAGTC-GATG
* *
12839608 TCATGTCCTAGACAGGTCTTACA
1 CCATGTCCCAGACAGGTCTTACA
12839631 CTAGCTAGTA
Statistics
Matches: 97, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
44 26 0.27
45 1 0.01
46 1 0.01
47 18 0.19
48 15 0.15
49 36 0.37
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (47 bp):
CCATGTCCCAGACAGGTCTTACATTGGCTAGCACATCAAAGTCGATG
Found at i:12839680 original size:48 final size:47
Alignment explanation
Indices: 12839609--12839823 Score: 193
Period size: 48 Copynumber: 4.6 Consensus size: 47
12839599 AAGCTGACGT
* * * **
12839609 CATGTCCTAGACAGGTCTTACACTAGCTAGTATATTTCGAGGCTAATG
1 CATGTCCCAGACATGTCTTACACTAGCT-GTATATCTCGAGGCCGATG
* * ** * *
12839657 CATGTCCTAGACATGTCTTACACTAGCTCT-CGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTGTATATCTCGAGGCCGATG
* *
12839703 CATGTCCCCGACATGTCTTACACTGGCTGGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-GTATATCTCGAGGCCGATG
* * * * *
12839751 CATGTCCCAGACATGCCTTACACTGGCTCTCA-ATAT-GTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTGT-ATATCTCGAGGCCGATG
** *
12839797 CATGTTTCAGACATGTCTTACAATAGC
1 CATGTCCCAGACATGTCTTACACTAGC
12839824 ACACATATCA
Statistics
Matches: 137, Mismatches: 27, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
46 65 0.47
47 6 0.04
48 66 0.48
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTGTATATCTCGAGGCCGATG
Found at i:12839717 original size:46 final size:46
Alignment explanation
Indices: 12839468--12839818 Score: 183
Period size: 48 Copynumber: 7.5 Consensus size: 46
12839458 ATGCCGACAC
** * *
12839468 CATGTCCCAGACATGGTCTTACACTGGCTAGCA-CATCAAAGTCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCTCATC-TCAAGGCCGATG
* * * **
12839515 CCATGTCCCAGACAGGTCTTACATTGGCTCTCATCT-ATTTATGTTGATG
1 -CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCA---AGGCCGATG
* * * * * * * *
12839564 CCATGTCCCAGACAGGTCTTACATTGACACACA--ACAA-GCTGACG
1 -CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCAAGGCCGATG
* * * * * * * **
12839608 TCATGTCCTAGACAGGTCTTACACTAGCTAGTATATTTCGAGGCTAATG
1 -CATGTCCCAGACATGTCTTACACTGGCT-CT-CATCTCAAGGCCGATG
* * * *
12839657 CATGTCCTAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCAAGGCCGATG
* * * *
12839703 CATGTCCCCGACATGTCTTACACTGGCTGGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCT-CT-CATCTCAAGGCCGATG
* * **
12839751 CATGTCCCAGACATGCCTTACACTGGCTCTCAATAT-GTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTC-ATCTCAAGGCCGATG
**
12839797 CATGTTTCAGACATGTCTTACA
1 CATGTCCCAGACATGTCTTACA
12839819 ATAGCACACA
Statistics
Matches: 239, Mismatches: 51, Indels: 28
0.75 0.16 0.09
Matches are distributed among these distances:
44 28 0.12
45 1 0.00
46 64 0.27
47 22 0.09
48 82 0.34
49 42 0.18
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCAAGGCCGATG
Found at i:12839736 original size:94 final size:94
Alignment explanation
Indices: 12839609--12839781 Score: 247
Period size: 94 Copynumber: 1.8 Consensus size: 94
12839599 AAGCTGACGT
* * * * *
12839609 CATGTCCTAGACAGGTCTTACACTAGCTAGTATATTTCGAGGCTAATGCATGTCCTAGACATGTC
1 CATGTCCCAGACAGGTCTTACACTAGCTAGTATATCTCGAGGCCAATGCATGTCCCAGACATGCC
12839674 TTACACTAGCTCTCGTCTCAATGCCGATG
66 TTACACTAGCTCTCGTCTCAATGCCGATG
* * * * *
12839703 CATGTCCCCGACATGTCTTACACTGGCTGGTATATCTCGAGGCCGATGCATGTCCCAGACATGCC
1 CATGTCCCAGACAGGTCTTACACTAGCTAGTATATCTCGAGGCCAATGCATGTCCCAGACATGCC
*
12839768 TTACACTGGCTCTC
66 TTACACTAGCTCTC
12839782 AATATGTGGC
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
94 68 1.00
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (94 bp):
CATGTCCCAGACAGGTCTTACACTAGCTAGTATATCTCGAGGCCAATGCATGTCCCAGACATGCC
TTACACTAGCTCTCGTCTCAATGCCGATG
Found at i:12839794 original size:94 final size:93
Alignment explanation
Indices: 12839609--12839823 Score: 243
Period size: 94 Copynumber: 2.3 Consensus size: 93
12839599 AAGCTGACGT
* * * * * *
12839609 CATGTCCTAGACAGGTCTTACACTAGCTAGTATATTTCGAGGCTAATGCATGTCCTAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTAGTATATCTCGAGGCCAATGCATGTCCCAGACATGCC
* *
12839674 TTACACTAGCTCTCGTCTCAATGCCGATG
66 TTACACTAGCTCTCATAT-AATGCCGATG
* * * *
12839703 CATGTCCCCGACATGTCTTACACTGGCTGGTATATCTCGAGGCCGATGCATGTCCCAGACATGCC
1 CATGTCCCAGACATGTCTTACACTAGCTAGTATATCTCGAGGCCAATGCATGTCCCAGACATGCC
* *
12839768 TTACACTGGCTCTCA-ATATGTGGCCGATG
66 TTACACTAGCTCTCATATA-AT-GCCGATG
** *
12839797 CATGTTTCAGACATGTCTTACAATAGC
1 CATGTCCCAGACATGTCTTACACTAGC
12839824 ACACATATCA
Statistics
Matches: 100, Mismatches: 19, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
92 1 0.01
93 2 0.02
94 97 0.97
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTAGCTAGTATATCTCGAGGCCAATGCATGTCCCAGACATGCC
TTACACTAGCTCTCATATAATGCCGATG
Found at i:12840499 original size:20 final size:20
Alignment explanation
Indices: 12840474--12840512 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
12840464 AGAATTTCAA
12840474 TTATTTCACA-CATTTACAAC
1 TTATTTCACAGC-TTTACAAC
*
12840494 TTATTTTACAGCTTTACAA
1 TTATTTCACAGCTTTACAA
12840513 AATAGCCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.33, C:0.21, G:0.03, T:0.44
Consensus pattern (20 bp):
TTATTTCACAGCTTTACAAC
Found at i:12841739 original size:15 final size:16
Alignment explanation
Indices: 12841719--12841758 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
12841709 TAAATTGAAA
12841719 AAATGAAAAGTT-ATT
1 AAATGAAAAGTTAATT
* *
12841734 AAATGACAATTTAATT
1 AAATGAAAAGTTAATT
12841750 AAATGAAAA
1 AAATGAAAA
12841759 AGAAAACAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.57, C:0.03, G:0.10, T:0.30
Consensus pattern (16 bp):
AAATGAAAAGTTAATT
Found at i:12842561 original size:7 final size:7
Alignment explanation
Indices: 12842549--12842579 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
12842539 AATGCCCGAC
12842549 AAATGAT
1 AAATGAT
12842556 AAATGAT
1 AAATGAT
12842563 AAATGAT
1 AAATGAT
12842570 AAATGAT
1 AAATGAT
12842577 AAA
1 AAA
12842580 AATGTTAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.61, C:0.00, G:0.13, T:0.26
Consensus pattern (7 bp):
AAATGAT
Found at i:12854410 original size:13 final size:14
Alignment explanation
Indices: 12854387--12854424 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
12854377 AATGTTTTAT
12854387 AGTGA-ACATGTTA
1 AGTGATACATGTTA
12854400 A-TGATACATGTTA
1 AGTGATACATGTTA
*
12854413 AGTGATATATGT
1 AGTGATACATGT
12854425 GTGTATTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 3 0.14
13 10 0.45
14 9 0.41
ACGTcount: A:0.37, C:0.05, G:0.21, T:0.37
Consensus pattern (14 bp):
AGTGATACATGTTA
Found at i:12858003 original size:19 final size:20
Alignment explanation
Indices: 12857971--12858016 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 20
12857961 CGAAAAATGA
12857971 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
12857991 TTTCTGG-AAATGATTTACT
1 TTTCTGGAAAATGATTTACT
12858010 TTTCTGG
1 TTTCTGG
12858017 TATTTGGATG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 19 0.73
20 7 0.27
ACGTcount: A:0.24, C:0.11, G:0.17, T:0.48
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:12858124 original size:20 final size:20
Alignment explanation
Indices: 12858099--12858136 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
12858089 GTTTTTACAT
12858099 ATATTAATAAATTTATATAC
1 ATATTAATAAATTTATATAC
12858119 ATATTAATAAATTTATAT
1 ATATTAATAAATTTATAT
12858137 TTTAAATAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (20 bp):
ATATTAATAAATTTATATAC
Found at i:12858153 original size:28 final size:28
Alignment explanation
Indices: 12858122--12858178 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
12858112 TATATACATA
*
12858122 TTAATAAATTTATATTTTAAATAGTTTT
1 TTAATAAATTTATACTTTAAATAGTTTT
*
12858150 TTAATAAATTTATACTTTAAATTGTTTT
1 TTAATAAATTTATACTTTAAATAGTTTT
12858178 T
1 T
12858179 ACATATATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.58
Consensus pattern (28 bp):
TTAATAAATTTATACTTTAAATAGTTTT
Found at i:12859731 original size:22 final size:21
Alignment explanation
Indices: 12859701--12859747 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
12859691 TACAAATTAA
12859701 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
12859723 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
12859744 ATCT
1 ATCT
12859748 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:12859753 original size:19 final size:19
Alignment explanation
Indices: 12859718--12859796 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
12859708 AGATTACAAG
12859718 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
12859739 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
12859756 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
12859775 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
12859794 ATC
1 ATC
12859797 CTTAAATATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
20 1 0.02
21 8 0.14
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:12859773 original size:36 final size:38
Alignment explanation
Indices: 12859718--12859790 Score: 132
Period size: 36 Copynumber: 2.0 Consensus size: 38
12859708 AGATTACAAG
12859718 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
12859756 ATCATATC-T-AAGATTGCATATCATATCTAAGATTG
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTG
12859791 CATATCCTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 26 0.74
37 1 0.03
38 8 0.23
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (38 bp):
ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
Found at i:12860666 original size:41 final size:40
Alignment explanation
Indices: 12860619--12860758 Score: 124
Period size: 41 Copynumber: 3.4 Consensus size: 40
12860609 TAACCTGTTA
*
12860619 CCCTACTGCTTAGGGGATTAAGGCGGGTCTTCGATCTGCT
1 CCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCT
* * * * *
12860659 CCACTACTGCTTAGGGAGA-TAAGATCTGCAAAT-TT-AACCTGTT
1 CC-CTACTGCTTAGGG-GATTAAG----GCGAGTCTTCGATCTGCT
12860702 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCT
1 -CCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCT
*
12860743 CTGCTACTGCTTAGGG
1 C-CCTACTGCTTAGGG
12860759 AGATAAGATC
Statistics
Matches: 77, Mismatches: 12, Indels: 21
0.70 0.11 0.19
Matches are distributed among these distances:
39 4 0.05
40 5 0.06
41 35 0.45
42 4 0.05
43 22 0.29
44 4 0.05
45 3 0.04
ACGTcount: A:0.21, C:0.24, G:0.26, T:0.30
Consensus pattern (40 bp):
CCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCT
Found at i:12860696 original size:84 final size:84
Alignment explanation
Indices: 12860534--12860893 Score: 555
Period size: 84 Copynumber: 4.3 Consensus size: 84
12860524 ATCATCTTAG
* * * *
12860534 ACCCTACTGCTTAGGGGGTTAAGGTGCATTGTCTTCGATCTGCTCCGCTATTGCTTA-GG-GATA
1 ACCCTACTGCTTAGGGGATTAAGGCG-A--GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
12860597 AGATCTGCAAA-TTAACCTGTT
63 AGATCTGCAAATTTAACCTGTT
*
12860618 ACCCTACTGCTTAGGGGATTAAGGCGGGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
12860683 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
**
12860702 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCTGCTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
12860767 TCTGCAAATTTAACCTATT
66 TCTGCAAATTTAACCTGTT
* * * *
12860786 ACCCTACTACTTAAGGGATTAAGGCAAGTCTTCGAACTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
12860851 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
*
12860870 ACCCTACTACTTAGGGGATTAAGG
1 ACCCTACTGCTTAGGGGATTAAGG
12860894 AGCTGAATTT
Statistics
Matches: 256, Mismatches: 17, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
81 25 0.10
82 2 0.01
83 15 0.06
84 214 0.84
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (84 bp):
ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
TCTGCAAATTTAACCTGTT
Found at i:12861858 original size:7 final size:7
Alignment explanation
Indices: 12861846--12861893 Score: 64
Period size: 7 Copynumber: 6.9 Consensus size: 7
12861836 CACTCCATTT
12861846 TTTTTTC
1 TTTTTTC
12861853 TTTTTTC
1 TTTTTTC
12861860 -TTTTTC
1 TTTTTTC
12861866 TTTTTT-
1 TTTTTTC
12861872 TTCTTTTC
1 TT-TTTTC
12861880 TTTTTTCC
1 TTTTTT-C
12861888 TTTTTT
1 TTTTTT
12861894 TTGAAATAGA
Statistics
Matches: 37, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
6 8 0.22
7 20 0.54
8 9 0.24
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTTC
Found at i:12861871 original size:15 final size:14
Alignment explanation
Indices: 12861843--12861885 Score: 63
Period size: 13 Copynumber: 3.2 Consensus size: 14
12861833 AGCCACTCCA
12861843 TTTTT-TTTTCTTT
1 TTTTTCTTTTCTTT
*
12861856 TTTCT-TTTTCTTT
1 TTTTTCTTTTCTTT
12861869 TTTTTCTTTTCTTT
1 TTTTTCTTTTCTTT
12861883 TTT
1 TTT
12861886 CCTTTTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
13 16 0.59
14 11 0.41
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (14 bp):
TTTTTCTTTTCTTT
Found at i:12861871 original size:21 final size:22
Alignment explanation
Indices: 12861844--12861895 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
12861834 GCCACTCCAT
*
12861844 TTTTTTTTCTTTT-TTCTTTTTC
1 TTTTTTTTCTTTTCTT-TTTTCC
12861866 TTTTTTTTCTTTTCTTTTTTCC
1 TTTTTTTTCTTTTCTTTTTTCC
12861888 TTTTTTTT
1 TTTTTTTT
12861896 GAAATAGAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
22 26 0.93
23 2 0.07
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (22 bp):
TTTTTTTTCTTTTCTTTTTTCC
Found at i:12866539 original size:27 final size:27
Alignment explanation
Indices: 12866508--12866602 Score: 111
Period size: 27 Copynumber: 3.5 Consensus size: 27
12866498 TTAGTTTACC
* *
12866508 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTCAAATACCCTCGATTTGTA
* *
12866535 AAATTAC-CAAAGTACCCCCGATTTATA
1 AAATTACTCAAA-TACCCTCGATTTGTA
* *
12866562 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTCAAATACCCTCGATTTGTA
*
12866589 AAATTACTGAAATA
1 AAATTACTCAAATA
12866603 AGATAGAATT
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
26 3 0.05
27 50 0.88
28 4 0.07
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.29
Consensus pattern (27 bp):
AAATTACTCAAATACCCTCGATTTGTA
Found at i:12866637 original size:27 final size:27
Alignment explanation
Indices: 12866607--12866668 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
12866597 GAAATAAGAT
12866607 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
12866634 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
12866661 AAAATTAC
1 AGAATTAC
12866669 TGAAATACCC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.34, C:0.24, G:0.06, T:0.35
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:12866677 original size:27 final size:27
Alignment explanation
Indices: 12866620--12866733 Score: 104
Period size: 27 Copynumber: 4.2 Consensus size: 27
12866610 ATTACCATTT
* **
12866620 TACCCTCGATTTACAGAATTAC-CATTT
1 TACCCTCGATTTACAAAATTACTCA-AA
*
12866647 TACCCTCGATTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTCAAA
* * *
12866674 TACCCTTGGTTTACAAAATTACCCAAA
1 TACCCTCGATTTACAAAATTACTCAAA
** * **
12866701 TACCCTCGATCAATAAAATTACTGGAA
1 TACCCTCGATTTACAAAATTACTCAAA
12866728 TACCCT
1 TACCCT
12866734 TGTAGGGTAA
Statistics
Matches: 70, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
27 69 0.99
28 1 0.01
ACGTcount: A:0.36, C:0.25, G:0.08, T:0.31
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTCAAA
Found at i:12866694 original size:54 final size:54
Alignment explanation
Indices: 12866620--12866735 Score: 135
Period size: 54 Copynumber: 2.1 Consensus size: 54
12866610 ATTACCATTT
* * ** **
12866620 TACCCTCGATTTACAGAATTA-CCATTTTACCCTCGATTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACCCA-AATACCCTCGATCAACAAAATTACTGAAA
* * *
12866674 TACCCTTGGTTTACAAAATTACCCAAATACCCTCGATCAATAAAATTACTGGAA
1 TACCCTTGATTTACAAAATTACCCAAATACCCTCGATCAACAAAATTACTGAAA
12866728 TACCCTTG
1 TACCCTTG
12866736 TAGGGTAAAA
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 49 0.94
55 3 0.06
ACGTcount: A:0.35, C:0.25, G:0.09, T:0.31
Consensus pattern (54 bp):
TACCCTTGATTTACAAAATTACCCAAATACCCTCGATCAACAAAATTACTGAAA
Found at i:12866744 original size:27 final size:27
Alignment explanation
Indices: 12866717--12867034 Score: 414
Period size: 27 Copynumber: 11.8 Consensus size: 27
12866707 CGATCAATAA
* * *
12866717 AATTACTGGAATACCCTTGTAGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
12866744 AATTA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
*
12866771 AATTA-TCGCAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
*
12866798 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
12866825 AATTAC-CAGAATACCCCTATAAGGTAG
1 AATTACTGA-AATACCCCTGTAGGGTAG
*
12866852 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
12866879 AATTA-TCGAAATACCCCTATAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
12866906 AATTATTGCAATA-CCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
12866932 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
12866959 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
12866986 AATTA-TCGCAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
12867013 AATTACTGAAATACCCCTGTAG
1 AATTACTGAAATACCCCTGTAG
12867035 CTGGTAAAAT
Statistics
Matches: 261, Mismatches: 21, Indels: 18
0.87 0.07 0.06
Matches are distributed among these distances:
26 24 0.09
27 233 0.89
28 4 0.02
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:12867622 original size:27 final size:27
Alignment explanation
Indices: 12867592--12867960 Score: 506
Period size: 27 Copynumber: 13.7 Consensus size: 27
12867582 TATAATTGAA
12867592 CCTGTAGGGTAGAATTACCGAAATACC
1 CCTGTAGGGTAGAATTACCGAAATACC
*
12867619 CCTGTAGGGTAGAAATACCGAAATACC
1 CCTGTAGGGTAGAATTACCGAAATACC
* *
12867646 CTTATAGGGTAGAATTACCGAAATACC
1 CCTGTAGGGTAGAATTACCGAAATACC
**
12867673 CCTGTAGGGTAGAATTATTGAAATACC
1 CCTGTAGGGTAGAATTACCGAAATACC
* *
12867700 CCTATAGGGTAGAATTACCGCAATACC
1 CCTGTAGGGTAGAATTACCGAAATACC
*
12867727 CCTGTAGGGTAGAATTACCAAAATACC
1 CCTGTAGGGTAGAATTACCGAAATACC
*
12867754 CCTGTAGGGTAGAATTACCGGAATACC
1 CCTGTAGGGTAGAATTACCGAAATACC
* * *
12867781 CCTATAGGGTAGAATTACTGGAATACC
1 CCTGTAGGGTAGAATTACCGAAATACC
12867808 CCTGTAGGGTAGAATTACCGAAATACC
1 CCTGTAGGGTAGAATTACCGAAATACC
* * * *
12867835 CCTGTAAGGTTGAATTATCGCAATACC
1 CCTGTAGGGTAGAATTACCGAAATACC
* *
12867862 CCTGTAGGGTAAAATTACCGAAATACT
1 CCTGTAGGGTAGAATTACCGAAATACC
*
12867889 CCTGTAGGGTAGAATTACCAAAATACC
1 CCTGTAGGGTAGAATTACCGAAATACC
* * *
12867916 TCTGTAGGGTGGAATTACCGAGATA-C
1 CCTGTAGGGTAGAATTACCGAAATACC
* * *
12867942 CTTGTGGGGTAAAATTACC
1 CCTGTAGGGTAGAATTACC
12867961 ATTTTGCCCC
Statistics
Matches: 298, Mismatches: 44, Indels: 1
0.87 0.13 0.00
Matches are distributed among these distances:
26 15 0.05
27 283 0.95
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (27 bp):
CCTGTAGGGTAGAATTACCGAAATACC
Done.