Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 46 of 362
Found at i:13591280 original size:15 final size:15
Alignment explanation
Indices: 13591237--13591294 Score: 57
Period size: 15 Copynumber: 3.9 Consensus size: 15
13591227 CACTAAATGT
*
13591237 GTTAATTAGGCTTAAG
1 GTTAATTAAG-TTAAG
* *
13591253 ATTAACT-AGTTAAG
1 GTTAATTAAGTTAAG
13591267 GTTAATTAAGTTAAG
1 GTTAATTAAGTTAAG
*
13591282 TTTAATTAA-TTAA
1 GTTAATTAAGTTAA
13591295 ATATTAAACT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
14 14 0.40
15 16 0.46
16 5 0.14
ACGTcount: A:0.40, C:0.03, G:0.16, T:0.41
Consensus pattern (15 bp):
GTTAATTAAGTTAAG
Found at i:13595302 original size:14 final size:16
Alignment explanation
Indices: 13595276--13595307 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
13595266 AAATAAGAAC
13595276 AAGTACAATAAT-AGA
1 AAGTACAATAATAAGA
13595291 AAGTAC-ATAATAAGA
1 AAGTACAATAATAAGA
13595306 AA
1 AA
13595308 TAATTCAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.62, C:0.06, G:0.12, T:0.19
Consensus pattern (16 bp):
AAGTACAATAATAAGA
Found at i:13599620 original size:46 final size:46
Alignment explanation
Indices: 13599570--13599745 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
13599560 TGATTGAGCA
13599570 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
13599616 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
13599661 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
13599709 -CCTGAGCTCGTCGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
13599746 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 60 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:13599726 original size:93 final size:93
Alignment explanation
Indices: 13599567--13599738 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
13599557 GGATGATTGA
* *
13599567 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTCGAGT
13599632 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
13599660 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTCGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTCGAG
13599724 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
13599739 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTCGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:13608968 original size:39 final size:33
Alignment explanation
Indices: 13608892--13609001 Score: 148
Period size: 33 Copynumber: 3.3 Consensus size: 33
13608882 AGTGAATAAC
* * ** *
13608892 ACAGTATAAGTACAATCTGGGCGAAAGCTCTAT
1 ACAGTATCAGTACAGTCTGGGCCTAAGCCCTAT
* *
13608925 TCAGTATCAGTACAGTCTGGGCTTAAGCCCTAT
1 ACAGTATCAGTACAGTCTGGGCCTAAGCCCTAT
13608958 ACAGTATCAGTACAGTCTGGGCCTAAGCCCTAT
1 ACAGTATCAGTACAGTCTGGGCCTAAGCCCTAT
*
13608991 ACAGTAGCAGT
1 ACAGTATCAGT
13609002 GTGGGCCTAA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 68 1.00
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (33 bp):
ACAGTATCAGTACAGTCTGGGCCTAAGCCCTAT
Found at i:13609006 original size:28 final size:28
Alignment explanation
Indices: 13608932--13609015 Score: 98
Period size: 33 Copynumber: 2.9 Consensus size: 28
13608922 TATTCAGTAT
*
13608932 CAGTA-CAGTCTGGGCTTAAGCCCTATA
1 CAGTAGCAGTCTGGGCCTAAGCCCTATA
13608959 CAGTATCAGTACAGTCTGGGCCTAAGCCCTATA
1 CAG--T-AG--CAGTCTGGGCCTAAGCCCTATA
*
13608992 CAGTAGCAGTGTGGGCCTAAGCCC
1 CAGTAGCAGTCTGGGCCTAAGCCC
13609016 AATGTAGTAA
Statistics
Matches: 49, Mismatches: 2, Indels: 11
0.79 0.03 0.18
Matches are distributed among these distances:
27 3 0.06
28 17 0.35
29 1 0.02
30 3 0.06
31 1 0.02
33 24 0.49
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (28 bp):
CAGTAGCAGTCTGGGCCTAAGCCCTATA
Found at i:13609415 original size:27 final size:26
Alignment explanation
Indices: 13609385--13609467 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
13609375 GGGCATAATC
*
13609385 GTCATTTTACCATACAGGGGTATTACA
1 GTCATTTTACC-TACAGGGGCATTACA
* *
13609412 GTCACTTTACCCTACAGGGGCATTACG
1 GTCATTTTA-CCTACAGGGGCATTACA
* *
13609439 GTCTTTTTACCTATTAGGGGCATTACA
1 GTCATTTTACCTA-CAGGGGCATTACA
13609466 GT
1 GT
13609468 GTTTTGGTAA
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
26 4 0.09
27 41 0.87
28 2 0.04
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (26 bp):
GTCATTTTACCTACAGGGGCATTACA
Found at i:13609513 original size:27 final size:27
Alignment explanation
Indices: 13609483--13609560 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
13609473 GGTAAATCTA
*
13609483 CAAACCAAGGGTATTTCAGTAATTTTG
1 CAAACCAAGGGTATTTCAGTAATTTAG
*
13609510 CAAACCAATGGTATTTCTA-TAATTTAG
1 CAAACCAAGGGTATTTC-AGTAATTTAG
* *
13609537 -AAAGTCAAGGGTATTTCTGTAATT
1 CAAA-CCAAGGGTATTTCAGTAATT
13609561 GTAATAGCCC
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 3 0.07
27 39 0.91
28 1 0.02
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.36
Consensus pattern (27 bp):
CAAACCAAGGGTATTTCAGTAATTTAG
Found at i:13610761 original size:18 final size:19
Alignment explanation
Indices: 13610728--13610763 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
13610718 TTAAATTTAG
*
13610728 TAAATTAATTGAATTATGT
1 TAAATTAAATGAATTATGT
13610747 TAAATTAAATG-ATTATG
1 TAAATTAAATGAATTATG
13610764 ATGCCAAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (19 bp):
TAAATTAAATGAATTATGT
Found at i:13611222 original size:68 final size:67
Alignment explanation
Indices: 13611143--13611292 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
13611133 CATCATGTGT
* * * *
13611143 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
13611205 ATGTAG
62 ATGTAG
** * *
13611211 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
13611276 AG
66 AG
13611278 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
13611293 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:13611248 original size:64 final size:64
Alignment explanation
Indices: 13611167--13611350 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
13611157 AGACATTATG
* *
13611167 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
13611231 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
13611296 AA
63 AA
* * * *
13611298 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
13611351 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:13613180 original size:27 final size:27
Alignment explanation
Indices: 13613133--13613369 Score: 169
Period size: 27 Copynumber: 8.9 Consensus size: 27
13613123 GTAATTATGT
*
13613133 AAATT-AGGGTATTTCTA-TAATTTTCC
1 AAATTAAGGGTATTTC-AGTAATTTTAC
*
13613159 AAATTAAGGGTATTTCAGTAATTTTCC
1 AAATTAAGGGTATTTCAGTAATTTTAC
* * ** *
13613186 AAATCAGGGGTATTTTGGTAATTTTAA
1 AAATTAAGGGTATTTCAGTAATTTTAC
* *
13613213 AAATTGAGGGTATTTCAATAATTTTAC
1 AAATTAAGGGTATTTCAGTAATTTTAC
* *
13613240 AAGTT-AGGTGTATTTC-GATAATTTTAT
1 AAATTAAGG-GTATTTCAG-TAATTTTAC
** * * *
13613267 AGGTTGAGGGTATTTCGGTAATTTCAC
1 AAATTAAGGGTATTTCAGTAATTTTAC
* * **
13613294 AAACTAGGGGTATTTTGGTAATTTTAC
1 AAATTAAGGGTATTTCAGTAATTTTAC
* ** **
13613321 AAACTAAGGGTATTTTGGTAATTTTGT
1 AAATTAAGGGTATTTCAGTAATTTTAC
**
13613348 AAACCAAGGGTA-TTCAGTAATT
1 AAATTAAGGGTATTTCAGTAATT
13613370 CTACCTTACA
Statistics
Matches: 173, Mismatches: 32, Indels: 12
0.80 0.15 0.06
Matches are distributed among these distances:
26 17 0.10
27 152 0.88
28 4 0.02
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (27 bp):
AAATTAAGGGTATTTCAGTAATTTTAC
Found at i:13613197 original size:54 final size:54
Alignment explanation
Indices: 13613139--13613345 Score: 195
Period size: 54 Copynumber: 3.8 Consensus size: 54
13613129 ATGTAAATTA
*
13613139 GGGTATTTCT-ATAATTTTCCAAATTAAGGGTATTTCAGTAATTTTCCAAATCAG
1 GGGTATTT-TGATAATTTTACAAATTAAGGGTATTTCAGTAATTTTCCAAATCAG
* * * * * * *
13613193 GGGTATTTTGGTAATTTTAAAAATTGAGGGTATTTCAATAATTTTACAAGTTAG
1 GGGTATTTTGATAATTTTACAAATTAAGGGTATTTCAGTAATTTTCCAAATCAG
* * * ** * *
13613247 GTGTATTTCGATAATTTTATAGGTTGAGGGTATTTCGGTAA-TTTCACAAA-CTAG
1 GGGTATTTTGATAATTTTACAAATTAAGGGTATTTCAGTAATTTTC-CAAATC-AG
* * **
13613301 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTT
1 GGGTATTTTGATAATTTTACAAATTAAGGGTATTTCAGTAATTTT
13613346 GTAAACCAAG
Statistics
Matches: 121, Mismatches: 28, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
53 4 0.03
54 114 0.94
55 3 0.02
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.43
Consensus pattern (54 bp):
GGGTATTTTGATAATTTTACAAATTAAGGGTATTTCAGTAATTTTCCAAATCAG
Found at i:13613395 original size:27 final size:26
Alignment explanation
Indices: 13613352--13613433 Score: 92
Period size: 27 Copynumber: 3.1 Consensus size: 26
13613342 TTTTGTAAAC
* *
13613352 CAAGGGTATTCAGTAATTCTACCTTA
1 CAAGGGCATTCAGTAATTCTACCCTA
13613378 CAAGGGCATTTCAGTAATTCTACCCTA
1 CAAGGGCA-TTCAGTAATTCTACCCTA
* * * *
13613405 TAGGGGCAATTCAGTAATACTAGCCTA
1 CAAGGGC-ATTCAGTAATTCTACCCTA
13613432 CA
1 CA
13613434 GAAATGAGAT
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
26 7 0.15
27 39 0.83
28 1 0.02
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (26 bp):
CAAGGGCATTCAGTAATTCTACCCTA
Found at i:13617655 original size:18 final size:18
Alignment explanation
Indices: 13617625--13617672 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
13617615 CAGTTTCTTT
*
13617625 CAGTAACATTTAGTCATC
1 CAGTAACAATTAGTCATC
*
13617643 C-GATAACAATTAGTTATC
1 CAG-TAACAATTAGTCATC
13617661 CAGTAACAATTA
1 CAGTAACAATTA
13617673 TTCGTTCAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
17 1 0.04
18 24 0.92
19 1 0.04
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (18 bp):
CAGTAACAATTAGTCATC
Found at i:13617784 original size:22 final size:22
Alignment explanation
Indices: 13617754--13617802 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
13617744 TCATTTAATC
*
13617754 ATTA-TTATTCAGTATCAGTCA
1 ATTATTTATTCAGTAACAGTCA
* *
13617775 TTTATTTATTTAGTAACAGTCA
1 ATTATTTATTCAGTAACAGTCA
13617797 ATTATT
1 ATTATT
13617803 CGGTAGCAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 3 0.13
22 20 0.87
ACGTcount: A:0.33, C:0.10, G:0.08, T:0.49
Consensus pattern (22 bp):
ATTATTTATTCAGTAACAGTCA
Found at i:13623613 original size:26 final size:25
Alignment explanation
Indices: 13623568--13623632 Score: 62
Period size: 26 Copynumber: 2.5 Consensus size: 25
13623558 AGAAATCTAA
13623568 CATCAATCATATAGTATTATCTCATG
1 CATCAATCATATAGTATTAT-TCATG
13623594 CATCAAT-ATATA-TAATTTATTCATG
1 CATCAATCATATAGT-A-TTATTCATG
*
13623619 TCATAAACTCATAT
1 -CATCAA-TCATAT
13623633 GCTAACACAA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
24 1 0.03
25 11 0.33
26 16 0.48
27 1 0.03
28 4 0.12
ACGTcount: A:0.38, C:0.17, G:0.05, T:0.40
Consensus pattern (25 bp):
CATCAATCATATAGTATTATTCATG
Found at i:13627063 original size:49 final size:49
Alignment explanation
Indices: 13627005--13627112 Score: 135
Period size: 49 Copynumber: 2.2 Consensus size: 49
13626995 CCAGGCATGA
* * *
13627005 TCTTACACTGGCTTTCATATAGCTAGGCCGCTACCATGTCCCAAACAGG
1 TCTTACACTGGCTCTCATATAGCGAGGCCGATACCATGTCCCAAACAGG
* * * ** *
13627054 TCTTACACTGGCTCTCATCTATCGATGTTGATGCCATGTCCCAAACAGG
1 TCTTACACTGGCTCTCATATAGCGAGGCCGATACCATGTCCCAAACAGG
13627103 TCTTACACTG
1 TCTTACACTG
13627113 ACACACCACA
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.30
Consensus pattern (49 bp):
TCTTACACTGGCTCTCATATAGCGAGGCCGATACCATGTCCCAAACAGG
Found at i:13627149 original size:44 final size:44
Alignment explanation
Indices: 13627086--13627287 Score: 314
Period size: 44 Copynumber: 4.6 Consensus size: 44
13627076 CGATGTTGAT
* *
13627086 GCCATGTCCCAAACAGGTCTTACACTGACACACCACAACCTGAC
1 GCCATGTCCCAGACAGGTCTTACACTGACACACCACAAGCTGAC
*
13627130 GCCATGTCCCAGACAGGTCTTACACTGACACACCACAAGCTAAC
1 GCCATGTCCCAGACAGGTCTTACACTGACACACCACAAGCTGAC
* * *
13627174 ACCATGTCCCAAACAGGTCTTACACTGACACACCACAAGTTGAC
1 GCCATGTCCCAGACAGGTCTTACACTGACACACCACAAGCTGAC
* * *
13627218 ACCATGTCCCAGACAGCTCTTACACTGACACACTACAAGCTGAC
1 GCCATGTCCCAGACAGGTCTTACACTGACACACCACAAGCTGAC
*
13627262 GCCATGTCCCAGACATGTCTTACACT
1 GCCATGTCCCAGACAGGTCTTACACT
13627288 AGCTCTCGTC
Statistics
Matches: 144, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 144 1.00
ACGTcount: A:0.31, C:0.36, G:0.14, T:0.18
Consensus pattern (44 bp):
GCCATGTCCCAGACAGGTCTTACACTGACACACCACAAGCTGAC
Found at i:13627282 original size:132 final size:137
Alignment explanation
Indices: 13627037--13627287 Score: 368
Period size: 132 Copynumber: 1.9 Consensus size: 137
13627027 CTAGGCCGCT
* * * * **
13627037 ACCATGTCCCAAACAGGTCTTACACTGGCTCTCATCTATCGATGTTGATGCCATGTCCCAAACAG
1 ACCATGTCCCAAACAGGTCTTACACTGGCACACATCCATCGAAGTTGACACCATGTCCCAAACAG
*
13627102 GTCTTACACTGACACACCACAACCTGACGCCATGTCCCAGACAGGTCTTACACTGACACACCACA
66 CTCTTACACTGACACACCACAACCTGACGCCATGTCCCAGACAGGTCTTACACTGACACACCACA
13627167 AGCTAAC
131 AGCTAAC
*
13627174 ACCATGTCCCAAACAGGTCTTACACT-G-ACACA-CCA-C-AAGTTGACACCATGTCCCAGACAG
1 ACCATGTCCCAAACAGGTCTTACACTGGCACACATCCATCGAAGTTGACACCATGTCCCAAACAG
* * *
13627234 CTCTTACACTGACACACTACAAGCTGACGCCATGTCCCAGACATGTCTTACACT
66 CTCTTACACTGACACACCACAACCTGACGCCATGTCCCAGACAGGTCTTACACT
13627288 AGCTCTCGTC
Statistics
Matches: 103, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
132 70 0.68
133 1 0.01
134 2 0.02
135 3 0.03
136 1 0.01
137 26 0.25
ACGTcount: A:0.30, C:0.35, G:0.15, T:0.21
Consensus pattern (137 bp):
ACCATGTCCCAAACAGGTCTTACACTGGCACACATCCATCGAAGTTGACACCATGTCCCAAACAG
CTCTTACACTGACACACCACAACCTGACGCCATGTCCCAGACAGGTCTTACACTGACACACCACA
AGCTAAC
Found at i:13628862 original size:19 final size:19
Alignment explanation
Indices: 13628838--13628877 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
13628828 TTCATGTGAG
13628838 TTTAATTCTTGCCTTTTTC
1 TTTAATTCTTGCCTTTTTC
13628857 TTTAATTCTTGCCTTTTTC
1 TTTAATTCTTGCCTTTTTC
13628876 TT
1 TT
13628878 GAAATTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.10, C:0.20, G:0.05, T:0.65
Consensus pattern (19 bp):
TTTAATTCTTGCCTTTTTC
Found at i:13628992 original size:19 final size:22
Alignment explanation
Indices: 13628968--13629007 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
13628958 AAAATTACCA
13628968 TTTATGA-AT-AC-TGGATTTT
1 TTTATGACATAACATGGATTTT
13628987 TTTATGACATAACATGGATTT
1 TTTATGACATAACATGGATTT
13629008 AGAGCTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.39
20 2 0.11
21 2 0.11
22 7 0.39
ACGTcount: A:0.30, C:0.07, G:0.15, T:0.47
Consensus pattern (22 bp):
TTTATGACATAACATGGATTTT
Found at i:13633392 original size:46 final size:46
Alignment explanation
Indices: 13633342--13633515 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
13633332 TGGTTGAGCA
13633342 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
13633388 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
13633433 CATCCGAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
13633481 -CCTGAGCTCGTTGATTTGAGTCCGAGTTCACTTAT
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
13633516 AAGCCGGTTA
Statistics
Matches: 107, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 5 0.05
46 59 0.55
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:13633500 original size:93 final size:93
Alignment explanation
Indices: 13633339--13633510 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
13633329 GGATGGTTGA
* *
13633339 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCGAACGTCCGAACTCGTTGAGT
13633404 TGAGTCCGAGTTCATGAAATGTAACTAG
66 TGAGTCCGAGTTCATGAAATGTAACTAG
* *
13633432 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCGAACG-CCTGAGCTCGTTGAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCGAACGTCC-GAACTCGTTGAG
13633496 TTGAGTCCGAGTTCA
65 TTGAGTCCGAGTTCA
13633511 CTTATAAGCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCATGAAATGTAACTAG
Found at i:13638561 original size:47 final size:47
Alignment explanation
Indices: 13638509--13638916 Score: 618
Period size: 47 Copynumber: 8.6 Consensus size: 47
13638499 GATAATTTTG
* * *
13638509 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
13638556 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
13638605 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
13638652 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
13638701 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
13638750 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
13638797 ATGTGAAAGTGTATATATGTGATGAGTCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
13638844 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
13638891 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
13638917 TCCCGAAGGG
Statistics
Matches: 334, Mismatches: 23, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
47 194 0.58
49 140 0.42
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:13638639 original size:96 final size:94
Alignment explanation
Indices: 13638509--13638916 Score: 618
Period size: 96 Copynumber: 4.3 Consensus size: 94
13638499 GATAATTTTG
* * *
13638509 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
13638574 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
13638605 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
13638670 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
13638701 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
13638766 ATGTGATAAGGCCTAATAGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
13638797 ATGTGAAAGTGTATATATGTGATGAGTCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * * * *
13638862 GTGACAGGGCCGAGTGGCCAACGTGATGG
66 GTGATAAGGCCTAATGGCCGATGTGATGA
*
13638891 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
13638917 TCCCGAAGGG
Statistics
Matches: 290, Mismatches: 20, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
94 97 0.33
96 148 0.51
98 45 0.16
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:13648449 original size:17 final size:18
Alignment explanation
Indices: 13648427--13648462 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
13648417 CACATTGAAG
13648427 TGTTTT-ATCGAAAACCT
1 TGTTTTAATCGAAAACCT
*
13648444 TGTTTTAATTGAAAACCT
1 TGTTTTAATCGAAAACCT
13648462 T
1 T
13648463 TCTTTAAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.44
Consensus pattern (18 bp):
TGTTTTAATCGAAAACCT
Found at i:13649775 original size:29 final size:28
Alignment explanation
Indices: 13649709--13649782 Score: 103
Period size: 28 Copynumber: 2.6 Consensus size: 28
13649699 AAGTCTACAT
* *
13649709 ACATGCATATGGCCCACTAGGCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
*
13649737 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCC-AATC
*
13649766 ACATTCATATGACCCAT
1 ACATTCATATGGCCCAT
13649783 CCAGCCCGAA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 21 0.52
29 19 0.47
ACGTcount: A:0.30, C:0.32, G:0.14, T:0.24
Consensus pattern (28 bp):
ACATTCATATGGCCCATTAGGCCCAATC
Found at i:13649789 original size:29 final size:28
Alignment explanation
Indices: 13649709--13649799 Score: 80
Period size: 29 Copynumber: 3.2 Consensus size: 28
13649699 AAGTCTACAT
* *
13649709 ACATGCATATGGCCCA-CTAGGCCCAATC
1 ACATTCATATGACCCATC-AGGCCCAATC
* * *
13649737 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGACCCATCAGGCCC-AATC
13649766 ACATTCATATGACCCATCCA-GCCCGAATC
1 ACATTCATATGACCCAT-CAGGCCC-AATC
13649795 A-ATTC
1 ACATTC
13649800 CAAGCCATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
28 24 0.45
29 28 0.53
30 1 0.02
ACGTcount: A:0.30, C:0.34, G:0.13, T:0.23
Consensus pattern (28 bp):
ACATTCATATGACCCATCAGGCCCAATC
Found at i:13653316 original size:93 final size:93
Alignment explanation
Indices: 13653204--13653375 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
13653194 GCCCATAAGT
* *
13653204 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
13653269 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
13653297 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
13653362 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
13653376 CAAATATCCT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:13653371 original size:46 final size:46
Alignment explanation
Indices: 13653196--13653371 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
13653186 TGTAACCCGC
* * *
13653196 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
13653242 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
13653292 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
13653335 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
13653372 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:13655796 original size:30 final size:30
Alignment explanation
Indices: 13655752--13655840 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
13655742 CAAAGATAAC
13655752 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
13655781 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
13655811 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
13655841 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:13655800 original size:15 final size:15
Alignment explanation
Indices: 13655752--13655831 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
13655742 CAAAGATAAC
*
13655752 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
13655766 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
13655781 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
13655796 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
13655811 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
13655826 AAGAAA
1 AAGAAA
13655832 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:13655840 original size:15 final size:15
Alignment explanation
Indices: 13655763--13655840 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
13655753 AGAAAACCGA
13655763 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
13655778 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
13655792 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
13655807 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
13655823 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
13655838 ATA
1 ATA
13655841 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:13658884 original size:93 final size:93
Alignment explanation
Indices: 13658772--13658943 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
13658762 GCCCATAAGT
* *
13658772 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
13658837 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
13658865 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
13658930 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
13658944 CAAATATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:13658939 original size:46 final size:46
Alignment explanation
Indices: 13658764--13658939 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
13658754 TGTAACCCGC
* *
13658764 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
13658810 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
13658856 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
13658903 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
13658940 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:13664569 original size:26 final size:26
Alignment explanation
Indices: 13664540--13664592 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13664530 TTTTGGGCTG
* * *
13664540 TTTATTGTTTTTGTTTTTTTATTATT
1 TTTATTATTTTGGTTTTTTTAATATT
13664566 TTTATTATTTTGGTTTTTTTAATATT
1 TTTATTATTTTGGTTTTTTTAATATT
13664592 T
1 T
13664593 ATTTTGGTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (26 bp):
TTTATTATTTTGGTTTTTTTAATATT
Found at i:13665057 original size:43 final size:45
Alignment explanation
Indices: 13664996--13665090 Score: 140
Period size: 43 Copynumber: 2.2 Consensus size: 45
13664986 CTTCTTTGGG
** *
13664996 AGATAAGATCTTCAATCTTCAGTCTGCTTTCTTGCTACCTCAGAA
1 AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAA
*
13665041 AGATAAGA-C-TCAATCTTCAACCTGCTCTCTTGCTACCTCAGAG
1 AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAA
13665084 AGATAAG
1 AGATAAG
13665091 GCCAGTGGTA
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
43 37 0.80
44 1 0.02
45 8 0.17
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (45 bp):
AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGAA
Found at i:13665245 original size:43 final size:45
Alignment explanation
Indices: 13665174--13665269 Score: 119
Period size: 43 Copynumber: 2.2 Consensus size: 45
13665164 ACTGTTTAGG
* **
13665174 GAGATAAGATCTTCAATTTTCAGTCTGCT-TCCTTGCTACCTCAG-
1 GAGATAAGATCTTCAATCTTCAACCTGCTCT-CTTGCTACCTCAGA
13665218 GAAGATAAGA-C-TCAATCTTCAACCTGCTCTCTTGCTACCTCAGA
1 G-AGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGA
13665262 GAGATAAG
1 GAGATAAG
13665270 GCTTGGGGAT
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
43 34 0.74
44 4 0.09
45 8 0.17
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (45 bp):
GAGATAAGATCTTCAATCTTCAACCTGCTCTCTTGCTACCTCAGA
Found at i:13665377 original size:176 final size:177
Alignment explanation
Indices: 13664837--13665865 Score: 1484
Period size: 176 Copynumber: 5.8 Consensus size: 177
13664827 AGATCTAAAA
* * * *
13664837 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAAT-TGCCAATCGGCTCTCTTGCTTC
1 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACT-CAATCT-TCAACCTGCTCTCTTGCTAC
* * * * * * *
13664901 CTCAAAAAGATAAGGCTAGTGGCTAAAATCTGCTCCATTGCCAATACATGGAGATAAGATTCGCC
64 CTCAGAGAGATAAGGCTTGGGGATTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCC
* *
13664966 -TCTTTCGATCTGCTCCACTACT-TCTTTGGGAGATAAGATCTTCAA-TCT
129 ATC-TTCGATCTGCTCCGCTACTGT-TTAGGGAGATAAGATCTTCAATTCT
* *
13665014 TCAGTCTGCTTTCTTGCTACCTCAGAAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCT
1 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCT
** * * *
13665079 CAGAGAGATAAGGCCAGTGGTACTTTAAATCTGCTCCATTGTCGATACATGGAGATAAGATTCAC
66 CAGAGAGATAAGGCTTG-GGGA--TTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGC
13665144 CATCTTCGATCTGCTCCGCTACTGTTTAGGGAGATAAGATCTTCAATT-T
128 CATCTTCGATCTGCTCCGCTACTGTTTAGGGAGATAAGATCTTCAATTCT
13665193 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCT
1 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCT
* * *
13665258 CAGAGAGATAAGGCTTGGGGATTAAATCTGCTCCATTACCGATACATGGAGATAAAATTTGCCAT
66 CAGAGAGATAAGGCTTGGGGATTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCAT
* *
13665323 CTTCGATCTGCTCTGCTACTGTTTAGGGAGATAAGGTCTTCAATTCT
131 CTTCGATCTGCTCCGCTACTGTTTAGGGAGATAAGATCTTCAATTCT
*
13665370 T-AGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTACTACCT
1 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCT
*
13665434 CAGAGAGATAAGGCTTGGGGCTTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCAT
66 CAGAGAGATAAGGCTTGGGGATTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCAT
13665499 CTTCGATCTGCTCCGCTACTGTTTAGGGAGATAAGATCTTCAA-TCT
131 CTTCGATCTGCTCCGCTACTGTTTAGGGAGATAAGATCTTCAATTCT
* * *
13665545 TCAGTCTACTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTTTAACCTGCTCTCTTGCTACTT
1 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCT
* * * *
13665610 CAGAAAGATAAAGCTTGGTGCA-TAAATCTGCTCCATTTCCGATACATGGAGATAAGATTCGCCA
66 CAGAGAGATAAGGCTTGG-GGATTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCA
* * *
13665674 TCTTTGATCTGCTCTGCTACTGTTTAGGGAGATAAGATCTTCAA-TAT
130 TCTTCGATCTGCTCCGCTACTGTTTAGGGAGATAAGATCTTCAATTCT
* * **
13665721 TCAGTCTACTTCTTTGCTACCTCAGGAAGATAAGACTACAATCGCCAACCTGCTCTCTTGCTACC
1 TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACT-CAATCTTCAACCTGCTCTCTTGCTACC
* * * *
13665786 TCAGAGAGATAAGGC-TGGTGGCTAAAATCTGCTCCATTGCTGATACATGGAGAAAAGATTCGCC
65 TCAGAGAGATAAGGCTTGG-GGATTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCC
*
13665850 ATCTTCGATCTACTCC
129 ATCTTCGATCTGCTCC
13665866 ACTGCAACTT
Statistics
Matches: 775, Mismatches: 65, Indels: 24
0.90 0.08 0.03
Matches are distributed among these distances:
175 4 0.01
176 483 0.62
177 126 0.16
178 3 0.00
179 155 0.20
180 4 0.01
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (177 bp):
TCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCAATCTTCAACCTGCTCTCTTGCTACCT
CAGAGAGATAAGGCTTGGGGATTAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCAT
CTTCGATCTGCTCCGCTACTGTTTAGGGAGATAAGATCTTCAATTCT
Found at i:13666750 original size:21 final size:21
Alignment explanation
Indices: 13666724--13666767 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
13666714 TTGAAAAAGA
*
13666724 AAGAATAATTCAAAGATATCC
1 AAGAATAATTCAAAGAAATCC
13666745 AAGAATAATTCAAAGAAATCC
1 AAGAATAATTCAAAGAAATCC
13666766 AA
1 AA
13666768 TTTGTTGGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.57, C:0.14, G:0.09, T:0.20
Consensus pattern (21 bp):
AAGAATAATTCAAAGAAATCC
Found at i:13667150 original size:60 final size:64
Alignment explanation
Indices: 13667010--13667169 Score: 172
Period size: 60 Copynumber: 2.6 Consensus size: 64
13667000 AATCCCCTTT
* * *
13667010 GGTCTCAAGGCGCCCTTTGC-AGGTTTTCACCTTGGCCTCTCAATTTTTCCTTTTATTTTTATTG
1 GGTCTCAAAGCGCCCTTTGCGA-GTTTTCACTTTGGCCTCTC-ATTTTTCCTTTTATTTTTATAG
13667074 A
64 A
* *
13667075 -GTCTCAAAGTGCCCTTTGCGAGTTTTCACTTTGGCC-C-C-TTTTTTCTTTT-TTTTTA-AGAA
1 GGTCTCAAAGCGCCCTTTGCGAGTTTTCACTTTGGCCTCTCATTTTTCCTTTTATTTTTATAG-A
* * *
13667134 GGTCTCAAAGCACCCTTTGTGGGTTTTCACTTTGGC
1 GGTCTCAAAGCGCCCTTTGCGAGTTTTCACTTTGGC
13667170 TTCTTCCCCT
Statistics
Matches: 83, Mismatches: 9, Indels: 11
0.81 0.09 0.11
Matches are distributed among these distances:
58 1 0.01
59 7 0.08
60 41 0.49
62 1 0.01
63 1 0.01
64 31 0.37
65 1 0.01
ACGTcount: A:0.14, C:0.24, G:0.18, T:0.44
Consensus pattern (64 bp):
GGTCTCAAAGCGCCCTTTGCGAGTTTTCACTTTGGCCTCTCATTTTTCCTTTTATTTTTATAGA
Found at i:13670258 original size:42 final size:42
Alignment explanation
Indices: 13670211--13670321 Score: 127
Period size: 42 Copynumber: 2.6 Consensus size: 42
13670201 AGCTCTCACA
*
13670211 AGCTTCTATTTAACTCATATGAGTTTTCGC-TT-AGCTCTATTG
1 AGCTTCTATTTAACTCTTATG-GTTTTC-CATTCAGCTCTATTG
* * *
13670253 AGCTTCTTTTTAACCCTTATGGGTTTCCATTCAGCTCTATTG
1 AGCTTCTATTTAACTCTTATGGTTTTCCATTCAGCTCTATTG
* * *
13670295 AGCTTCTCTTTATCTCTTATGGGTTTC
1 AGCTTCTATTTAACTCTTATGGTTTTC
13670322 TGTTCAACTC
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
40 1 0.02
41 7 0.12
42 52 0.87
ACGTcount: A:0.17, C:0.22, G:0.14, T:0.47
Consensus pattern (42 bp):
AGCTTCTATTTAACTCTTATGGTTTTCCATTCAGCTCTATTG
Found at i:13670340 original size:42 final size:42
Alignment explanation
Indices: 13670245--13670343 Score: 110
Period size: 42 Copynumber: 2.4 Consensus size: 42
13670235 TTTCGCTTAG
* * *
13670245 CTCTATTGAGCTTCTTTTTAACCCTTATGGGTTTCCATTCAG
1 CTCTATCGAGCTTCTCTTTAACCCTTATGGGTTTCCATTCAA
* * * **
13670287 CTCTATTGAGCTTCTCTTTATCTCTTATGGGTTTCTGTTCAA
1 CTCTATCGAGCTTCTCTTTAACCCTTATGGGTTTCCATTCAA
13670329 CTCT-TACGAGCTTCT
1 CTCTAT-CGAGCTTCT
13670344 GTTAAACCAT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
41 1 0.02
42 48 0.98
ACGTcount: A:0.15, C:0.24, G:0.14, T:0.46
Consensus pattern (42 bp):
CTCTATCGAGCTTCTCTTTAACCCTTATGGGTTTCCATTCAA
Found at i:13670934 original size:23 final size:24
Alignment explanation
Indices: 13670907--13670953 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
13670897 TGGTTAAGTG
13670907 ATGAAT-AGTT-TATAGGTATGTTA
1 ATGAATGAGTTGTATA-GTATGTTA
13670930 ATGAATGAGTTGGTATAGTATGTT
1 ATGAATGAGTT-GTATAGTATGTT
13670954 TGATATAAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 6 0.29
24 4 0.19
25 7 0.33
26 4 0.19
ACGTcount: A:0.32, C:0.00, G:0.26, T:0.43
Consensus pattern (24 bp):
ATGAATGAGTTGTATAGTATGTTA
Found at i:13672623 original size:141 final size:141
Alignment explanation
Indices: 13672369--13672789 Score: 707
Period size: 141 Copynumber: 3.0 Consensus size: 141
13672359 CTATAAAGGT
* * * *
13672369 TTTGAGATATCAAGGTTGTATAAACTTTTTCATAAAATTAAGTCGTTGAAATTGCTATGATAGGT
1 TTTGAGATATCAAGGTTGTATAGACTTGTTCATAAAATGAAGTGGTTGAAATTGCTATGATAGGT
*
13672434 TATTAGCTTGATGGATGGAATAGTATGTTTGATGAGATTATCGAGTAGTTGAACTTGTGATTATT
66 TATTAGCTTGATGGATGGAATAGTATGTTTGATGAGATTATCAAGTAGTTGAACTTGTGATTATT
*
13672499 GAATTTGAATG
131 GAATATGAATG
*
13672510 TTTGAGATATCAAGGTTGTATAGACTTGTTCATAAAATGAAGTGGTTAAAATTGCTATGATAGGT
1 TTTGAGATATCAAGGTTGTATAGACTTGTTCATAAAATGAAGTGGTTGAAATTGCTATGATAGGT
* * *
13672575 TATTAGCTTGATGGATAGAATAGCATGTTTGATGAGATTATCAAGTAGTTGAACTTGTGATTGTT
66 TATTAGCTTGATGGATGGAATAGTATGTTTGATGAGATTATCAAGTAGTTGAACTTGTGATTATT
13672640 GAATATGAATG
131 GAATATGAATG
*
13672651 TTTGAGATATCAAGGTTGTATAGACTTGTTCATAGAATGAAGTGGTTGAAATTGCTATGATAGGT
1 TTTGAGATATCAAGGTTGTATAGACTTGTTCATAAAATGAAGTGGTTGAAATTGCTATGATAGGT
* * *
13672716 TATTAGCTTGATGGATGGAATAGTATGCTTGATAAGATTATCAAGTAGTTGAACTTGTGATTGTT
66 TATTAGCTTGATGGATGGAATAGTATGTTTGATGAGATTATCAAGTAGTTGAACTTGTGATTATT
*
13672781 TAATATGAA
131 GAATATGAA
13672790 CTTAGTTTGA
Statistics
Matches: 263, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
141 263 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.39
Consensus pattern (141 bp):
TTTGAGATATCAAGGTTGTATAGACTTGTTCATAAAATGAAGTGGTTGAAATTGCTATGATAGGT
TATTAGCTTGATGGATGGAATAGTATGTTTGATGAGATTATCAAGTAGTTGAACTTGTGATTATT
GAATATGAATG
Found at i:13674064 original size:28 final size:31
Alignment explanation
Indices: 13674006--13674065 Score: 72
Period size: 32 Copynumber: 2.0 Consensus size: 31
13673996 TATCTAGTTG
*
13674006 TTTATGACATAATTGAATGTTTGAATGATTTA
1 TTTATGACATAATTGAA-GTTTGAATAATTTA
*
13674038 TTTATGACATACTTG-A-TTTGAA-AATTTA
1 TTTATGACATAATTGAAGTTTGAATAATTTA
13674066 AAATTGTTGC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
28 5 0.19
29 6 0.23
31 1 0.04
32 14 0.54
ACGTcount: A:0.35, C:0.05, G:0.13, T:0.47
Consensus pattern (31 bp):
TTTATGACATAATTGAAGTTTGAATAATTTA
Found at i:13675419 original size:24 final size:23
Alignment explanation
Indices: 13675375--13675447 Score: 74
Period size: 24 Copynumber: 3.0 Consensus size: 23
13675365 GAAACCTTAT
* * **
13675375 AATATATATAATTTATAAATATCT
1 AATATAAATATTTTAT-AATATAA
13675399 AATAATAAATATTTTATAATATAA
1 AAT-ATAAATATTTTATAATATAA
*
13675423 AATATGAATATTTTAATAATATAA
1 AATATAAATATTTT-ATAATATAA
13675447 A
1 A
13675448 TTAATCTACT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
23 10 0.24
24 21 0.50
25 11 0.26
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.42
Consensus pattern (23 bp):
AATATAAATATTTTATAATATAA
Found at i:13675814 original size:2 final size:2
Alignment explanation
Indices: 13675803--13675848 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
13675793 ATATGTATGC
13675803 CT CT -T CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
13675844 CT CT C
1 CT CT C
13675849 GTCAAATGGT
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 42 0.98
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:13684469 original size:49 final size:49
Alignment explanation
Indices: 13684328--13684581 Score: 260
Period size: 49 Copynumber: 5.1 Consensus size: 49
13684318 GATCCCATCA
* * **
13684328 GAACAAAGTAAAAAGATAAAACTTCGATTGAAAATGGGTTCTCGGCTCG
1 GAACAAAGTAAAAAGATAAAACCTCGATCGAAAACAGGTTCTCGGCTCG
* * *
13684377 GAACAAAGTAAAATGATATAAAACCTTGATCGAAAAC-GAGTTCTCGACTCG
1 GAACAAAGTAAAA--AGATAAAACCTCGATCGAAAACAG-GTTCTCGGCTCG
*
13684428 GAATAAAGTAAAAAGATAAAACCTCGATCGAAAACAGGTTCTCGGCTCG
1 GAACAAAGTAAAAAGATAAAACCTCGATCGAAAACAGGTTCTCGGCTCG
* * * * * * * *
13684477 AAACGAAGTAAAATGATATAAAACCTCGGTCGAAAA-TGAATTTTCGGCTCT
1 GAACAAAGTAAAA--AGATAAAACCTCGATCGAAAACAG-GTTCTCGGCTCG
* * **
13684528 AAATAAAGTAAAAAGATAAAACCTTAATCGAAAACAGGTTCTCGGCTCG
1 GAACAAAGTAAAAAGATAAAACCTCGATCGAAAACAGGTTCTCGGCTCG
13684577 GAACA
1 GAACA
13684582 TGATAAAAGG
Statistics
Matches: 166, Mismatches: 31, Indels: 16
0.78 0.15 0.08
Matches are distributed among these distances:
49 83 0.50
50 4 0.02
51 79 0.48
ACGTcount: A:0.43, C:0.17, G:0.19, T:0.21
Consensus pattern (49 bp):
GAACAAAGTAAAAAGATAAAACCTCGATCGAAAACAGGTTCTCGGCTCG
Found at i:13684510 original size:100 final size:100
Alignment explanation
Indices: 13684332--13684581 Score: 347
Period size: 100 Copynumber: 2.5 Consensus size: 100
13684322 CCATCAGAAC
* * ** *
13684332 AAAGTAAAAAGATAAAACTTCGATTGAAAATGGGTTCTCGGCTCGGAACAAAGTAAAATGATATA
1 AAAGTAAAAAGATAAAACCTCGATCGAAAACAGGTTCTCGGCTCGAAACAAAGTAAAATGATATA
* * *
13684397 AAACCTTGATCGAAAACGAGTTCTCGACTCGGAAT
66 AAACCTCGATCGAAAACGAATTCTCGACTCGAAAT
*
13684432 AAAGTAAAAAGATAAAACCTCGATCGAAAACAGGTTCTCGGCTCGAAACGAAGTAAAATGATATA
1 AAAGTAAAAAGATAAAACCTCGATCGAAAACAGGTTCTCGGCTCGAAACAAAGTAAAATGATATA
* * * * *
13684497 AAACCTCGGTCGAAAATGAATTTTCGGCTCTAAAT
66 AAACCTCGATCGAAAACGAATTCTCGACTCGAAAT
** *
13684532 AAAGTAAAAAGATAAAACCTTAATCGAAAACAGGTTCTCGGCTCGGAACA
1 AAAGTAAAAAGATAAAACCTCGATCGAAAACAGGTTCTCGGCTCGAAACA
13684582 TGATAAAAGG
Statistics
Matches: 132, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
100 132 1.00
ACGTcount: A:0.43, C:0.16, G:0.19, T:0.22
Consensus pattern (100 bp):
AAAGTAAAAAGATAAAACCTCGATCGAAAACAGGTTCTCGGCTCGAAACAAAGTAAAATGATATA
AAACCTCGATCGAAAACGAATTCTCGACTCGAAAT
Found at i:13684799 original size:7 final size:7
Alignment explanation
Indices: 13684787--13684814 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
13684777 CAGCAAATAT
13684787 GAGAGAA
1 GAGAGAA
13684794 GAGAGAA
1 GAGAGAA
13684801 GAGAGAA
1 GAGAGAA
13684808 GAGAGAA
1 GAGAGAA
13684815 AGGGGGCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00
Consensus pattern (7 bp):
GAGAGAA
Found at i:13692892 original size:48 final size:48
Alignment explanation
Indices: 13692810--13692903 Score: 111
Period size: 48 Copynumber: 2.0 Consensus size: 48
13692800 TTTCTTGGCT
* * *
13692810 TAAAAACGCCTACGTCAGCCTAACTTCCACCAATAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
* *
13692858 TAAAAACGCCTAAGTCAG-CTCAAC-TCGTAACAATAAAGTATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AACTTC-CAACAATAAAGGATTCAAC
13692904 AGAATTCCCT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
47 4 0.10
48 35 0.90
ACGTcount: A:0.39, C:0.28, G:0.12, T:0.21
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:13695400 original size:48 final size:48
Alignment explanation
Indices: 13695318--13695411 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 48
13695308 TTTCTTGGCT
* *
13695318 TAAAAACGCCTAAGTCAGCCTAACTTCCACCAATAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
*
13695366 TAAAAACGCCTAAGTCAG-CTCAAC-TCGCAACAATAAAGTATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AACTTC-CAACAATAAAGGATTCAAC
13695412 AGAATTCCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
47 4 0.10
48 37 0.90
ACGTcount: A:0.40, C:0.28, G:0.12, T:0.20
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:13697451 original size:26 final size:28
Alignment explanation
Indices: 13697408--13697463 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 28
13697398 AAATAAAAAT
*
13697408 ATTATCATAAATAAAAATA-TTAT-TTA
1 ATTATCATAAAGAAAAATATTTATCTTA
* *
13697434 ATTATCATTAAGATAAATATTTATCTTA
1 ATTATCATAAAGAAAAATATTTATCTTA
13697462 AT
1 AT
13697464 ATTTAAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 16 0.64
27 4 0.16
28 5 0.20
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (28 bp):
ATTATCATAAAGAAAAATATTTATCTTA
Found at i:13697503 original size:23 final size:23
Alignment explanation
Indices: 13697475--13697518 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
13697465 TTTAAATTTG
*
13697475 TTATCATTAATTT-TTTTAAAAAA
1 TTATCA-TAATTTAATTTAAAAAA
13697498 TTATCATAATTTAATTTAAAA
1 TTATCATAATTTAATTTAAAA
13697519 TTATTTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (23 bp):
TTATCATAATTTAATTTAAAAAA
Found at i:13699466 original size:18 final size:19
Alignment explanation
Indices: 13699443--13699479 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
13699433 AAACTTTTTT
*
13699443 CTTTTACTTTCCC-AAAAA
1 CTTTTACTTCCCCTAAAAA
13699461 CTTTTACTTCCCCTAAAAA
1 CTTTTACTTCCCCTAAAAA
13699480 AAAATTACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.32, C:0.30, G:0.00, T:0.38
Consensus pattern (19 bp):
CTTTTACTTCCCCTAAAAA
Found at i:13704155 original size:6 final size:6
Alignment explanation
Indices: 13704130--13704172 Score: 68
Period size: 6 Copynumber: 6.8 Consensus size: 6
13704120 GCAAATGAAT
13704130 CATTTC ACATTTC ACATTTC CATTTC CATTTC CATTTC CATTT
1 CATTTC -CATTTC -CATTTC CATTTC CATTTC CATTTC CATTT
13704173 TGAGAAAACC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 23 0.64
7 13 0.36
ACGTcount: A:0.21, C:0.30, G:0.00, T:0.49
Consensus pattern (6 bp):
CATTTC
Found at i:13704236 original size:45 final size:45
Alignment explanation
Indices: 13704159--13704262 Score: 124
Period size: 45 Copynumber: 2.4 Consensus size: 45
13704149 CCATTTCCAT
*
13704159 TTCCA-TT-TCCATTTTGAGAAAACCACATTCATTTCTAAATG-A
1 TTCCATTTCTCCATTTTGAGAAAACCACAGTCATTTCTAAATGTA
* * * *
13704201 TTCCATTTCTCCATTTTAGAGAAAACCATAGTCATTTTTTAATGTT
1 TTCCATTTCTCCATTTT-GAGAAAACCACAGTCATTTCTAAATGTA
*
13704247 TTCCATTTCTCTATTT
1 TTCCATTTCTCCATTT
13704263 CTATTCATTT
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
42 5 0.10
43 2 0.04
44 8 0.15
45 22 0.42
46 15 0.29
ACGTcount: A:0.28, C:0.20, G:0.07, T:0.45
Consensus pattern (45 bp):
TTCCATTTCTCCATTTTGAGAAAACCACAGTCATTTCTAAATGTA
Found at i:13716597 original size:48 final size:48
Alignment explanation
Indices: 13716517--13716736 Score: 235
Period size: 48 Copynumber: 4.5 Consensus size: 48
13716507 ACTAGGGTTC
*
13716517 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATA
1 TGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGATA
* * * * * **
13716565 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTATA
1 TGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGATA
* * ** *
13716613 TGAGAGCTAGTGTAAGACAATGTCTGGGACATGGCATTAGCCTCGACA
1 TGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGATA
* * * * *
13716661 TGTGGGCTAGTGTAAGACCATGTTTGGAACATGGCATTGGCAC-CAATATA
1 TGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGC-CTC--GATA
*
13716711 TGAGAGCCAGTGTAAGACCATGTCTG
1 TGAGAGCTAGTGTAAGACCATGTCTG
13716737 AGATATGACA
Statistics
Matches: 137, Mismatches: 32, Indels: 4
0.79 0.18 0.02
Matches are distributed among these distances:
48 112 0.82
49 1 0.01
50 24 0.18
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
TGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGATA
Found at i:13716681 original size:96 final size:98
Alignment explanation
Indices: 13716517--13716751 Score: 332
Period size: 96 Copynumber: 2.4 Consensus size: 98
13716507 ACTAGGGTTC
** *
13716517 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAAGA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTAGCCTCGACATGTGAGCCAGTGTAAGA
*
13716582 CCATGTTTGGAACATGGCA-TCG-A-CATTTATA
66 CCATGTTTGGAACATGGCATTCGCACCA-ATATA
* * *
13716613 TGAGAGCTAGTGTAAGACAATGTCTGGGACATGGCATTAGCCTCGACATGTGGGCTAGTGTAAGA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTAGCCTCGACATGTGAGCCAGTGTAAGA
*
13716678 CCATGTTTGGAACATGGCATTGGCACCAATATA
66 CCATGTTTGGAACATGGCATTCGCACCAATATA
* * * *
13716711 TGAGAGCCAGTGTAAGACCATGTCTGAGATATGACATTAGC
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTAGC
13716752 ATCTTACCCT
Statistics
Matches: 123, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
96 78 0.63
97 2 0.02
98 41 0.33
99 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.26
Consensus pattern (98 bp):
TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTAGCCTCGACATGTGAGCCAGTGTAAGA
CCATGTTTGGAACATGGCATTCGCACCAATATA
Found at i:13720551 original size:25 final size:25
Alignment explanation
Indices: 13720523--13720648 Score: 83
Period size: 25 Copynumber: 5.3 Consensus size: 25
13720513 CGAATGGCCA
13720523 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * *
13720548 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
13720570 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * *
13720595 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
13720617 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
*
13720642 GTGTGAT
1 ATGTGAT
13720649 AAGGCCGAAT
Statistics
Matches: 74, Mismatches: 13, Indels: 28
0.64 0.11 0.24
Matches are distributed among these distances:
22 16 0.22
23 18 0.24
24 18 0.24
25 22 0.30
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:13720566 original size:47 final size:47
Alignment explanation
Indices: 13720497--13720669 Score: 319
Period size: 47 Copynumber: 3.7 Consensus size: 47
13720487 TTTTATGTGT
*
13720497 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
13720544 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
13720591 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
* *
13720638 ATATGTGTGATAAGGCCGAATGGCTAATGTGA
1 ATATATGTGATAAGGCCGAATGGCCAATGTGA
13720670 AATATGTATG
Statistics
Matches: 123, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 123 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.25
Consensus pattern (47 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGC
Found at i:13720576 original size:22 final size:22
Alignment explanation
Indices: 13720505--13720623 Score: 66
Period size: 22 Copynumber: 5.1 Consensus size: 22
13720495 GTATATATGA
13720505 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
13720527 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
13720552 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
13720574 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
13720599 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
13720621 GAT
1 GAT
13720624 GAATGTGAAC
Statistics
Matches: 71, Mismatches: 12, Indels: 28
0.64 0.11 0.25
Matches are distributed among these distances:
22 19 0.27
23 18 0.25
24 18 0.25
25 16 0.23
ACGTcount: A:0.34, C:0.13, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:13720931 original size:37 final size:37
Alignment explanation
Indices: 13720871--13720977 Score: 171
Period size: 37 Copynumber: 2.9 Consensus size: 37
13720861 TGAAATATAT
13720871 TCCGGGTAAGA-CCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
13720907 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
13720944 TCTGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
13720978 TCGTCTGAGC
Statistics
Matches: 66, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
36 11 0.17
37 55 0.83
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:13724330 original size:48 final size:48
Alignment explanation
Indices: 13724259--13724742 Score: 851
Period size: 48 Copynumber: 10.0 Consensus size: 48
13724249 CAAGATAAAT
* *
13724259 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
13724307 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
13724355 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
13724403 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
** *
13724451 ATACATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
13724499 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
13724547 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATTTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
13724595 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTATGAG
13724645 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
13724693 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
13724741 AT
1 AT
13724743 GTGTGTATAT
Statistics
Matches: 417, Mismatches: 17, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
48 369 0.88
49 4 0.01
50 44 0.11
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:13724936 original size:37 final size:37
Alignment explanation
Indices: 13724883--13724985 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
13724873 GGAAATATAT
13724883 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
13724920 TCTGGGTAAGACCCGATGACTACGTATGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
13724957 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
13724986 GGACTATTCG
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:13728523 original size:13 final size:13
Alignment explanation
Indices: 13728505--13728544 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
13728495 CCACCACTTG
13728505 TTTCTTTATTTTT
1 TTTCTTTATTTTT
13728518 TTTCTTTATCATTTT
1 TTTCTTTAT--TTTT
*
13728533 TTTCTTTCTTTT
1 TTTCTTTATTTT
13728545 ACAATCACTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 12 0.50
15 12 0.50
ACGTcount: A:0.07, C:0.12, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTCTTTATTTTT
Found at i:13728580 original size:29 final size:27
Alignment explanation
Indices: 13728548--13728603 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 27
13728538 TTCTTTTACA
*
13728548 ATCACTTATTCCTTTTTTTTATTTTCTTT
1 ATCACTTATT-CTTTTTTTT-GTTTCTTT
* *
13728577 ATCATTTATTGTTTTTTTTGTTTCTTT
1 ATCACTTATTCTTTTTTTTGTTTCTTT
13728604 CTTTTACACT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 7 0.29
28 8 0.33
29 9 0.38
ACGTcount: A:0.12, C:0.12, G:0.04, T:0.71
Consensus pattern (27 bp):
ATCACTTATTCTTTTTTTTGTTTCTTT
Found at i:13728960 original size:22 final size:22
Alignment explanation
Indices: 13728932--13728976 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
13728922 TGGAGATGAC
*
13728932 TAGTTTTC-TTTTTTCTTTTTTT
1 TAGTTTTCATTTGTT-TTTTTTT
13728954 TAGTTTTCATTTGTTTTTTTTT
1 TAGTTTTCATTTGTTTTTTTTT
13728976 T
1 T
13728977 GGTTGTTGCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.07, C:0.07, G:0.07, T:0.80
Consensus pattern (22 bp):
TAGTTTTCATTTGTTTTTTTTT
Found at i:13733778 original size:21 final size:19
Alignment explanation
Indices: 13733725--13733778 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 19
13733715 AGGAACAGCA
13733725 CACGGCCGTGTGGCAGAGG
1 CACGGCCGTGTGGCAGAGG
* *
13733744 CACATGTCCATGTGGTACAGAGG
1 CAC--GGCCGTGTGG--CAGAGG
13733767 CACGGCCGTGTG
1 CACGGCCGTGTG
13733779 ATCAGGCCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
19 3 0.11
21 15 0.56
23 9 0.33
ACGTcount: A:0.19, C:0.26, G:0.39, T:0.17
Consensus pattern (19 bp):
CACGGCCGTGTGGCAGAGG
Found at i:13733865 original size:13 final size:13
Alignment explanation
Indices: 13733847--13733876 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
13733837 CCATGTGAAT
*
13733847 GTGTCACACGCTC
1 GTGTCACACGCCC
13733860 GTGTCACACGCCC
1 GTGTCACACGCCC
13733873 GTGT
1 GTGT
13733877 GGCAATTAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.13, C:0.37, G:0.27, T:0.23
Consensus pattern (13 bp):
GTGTCACACGCCC
Found at i:13752713 original size:47 final size:47
Alignment explanation
Indices: 13752598--13752799 Score: 296
Period size: 47 Copynumber: 4.3 Consensus size: 47
13752588 CTCGTAGTGA
13752598 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TAT
* *
13752647 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
* *
13752694 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
* * * * *
13752741 ATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTAT
1 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
*
13752788 AAATGTGATAAG
1 ATATGTGATAAG
13752800 TCCCGAAGGG
Statistics
Matches: 141, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
47 99 0.70
49 42 0.30
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
Found at i:13752974 original size:37 final size:37
Alignment explanation
Indices: 13752918--13752996 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
13752908 CCGAGCTCTA
* * *
13752918 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
13752955 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
13752992 AAGAC
1 AAGAC
13752997 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:13755633 original size:48 final size:48
Alignment explanation
Indices: 13755562--13755878 Score: 379
Period size: 48 Copynumber: 6.6 Consensus size: 48
13755552 TAAAGTACCA
* * *
13755562 ATGCCATGTCCCCGACATGGTCTTACATGAATC-CACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACA-CAAGCACACATATCATCGCCG
* **
13755610 ATGTCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAAGCACACATATCATCGCCG
* *
13755658 ATGCCATATCCCAGACATGGTCTTACACAGGCACACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAAGCACACATATCATCGCCG
* *
13755706 ATGCCATGTCCCAGACATGGTCTTACA-AAGGCGCAAATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAA-GCACACATATCATCGCCG
* * * *
13755754 ATGCCATGTTCCAGACATGGTCTTACACAGGCACATATATCAGCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAAGCACACATATCATCGCCG
** * * * **
13755802 ATGCCATGTCCTTGACATGGTCTTACATAGGCACACATCTCAGAT-GTTG
1 ATGCCATGTCCCAGACATGGTCTTACACAAGCACACATATC--ATCGCCG
*
13755851 ATACCATGTCCCAGACATGGTCTTACAC
1 ATGCCATGTCCCAGACATGGTCTTACAC
13755879 GAAATCTCAT
Statistics
Matches: 233, Mismatches: 31, Indels: 9
0.85 0.11 0.03
Matches are distributed among these distances:
47 2 0.01
48 203 0.87
49 27 0.12
50 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACAAGCACACATATCATCGCCG
Found at i:13755822 original size:144 final size:143
Alignment explanation
Indices: 13755562--13755877 Score: 429
Period size: 144 Copynumber: 2.2 Consensus size: 143
13755552 TAAAGTACCA
* * * *
13755562 ATGCCATGTCCCCGACATGGTCTTACATGAATCCACATATCATCGCCGATGTCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACA-GAAGCCAAATATCATCGCCGATGCCATGTCCCAGACA
* *
13755627 TGGTCTTACACTGGCACACATATCATCGCCGATGCCATATCCCAGACATGGTCTTACACAGGCAC
65 TGGTCTTACACAGGCACACATATCAGCGCCGATGCCATATCCCAGACATGGTCTTACACAGGCAC
13755692 ACATATC-ATCGCCG
130 ACATATCAAT-GCCG
*
13755706 ATGCCATGTCCCAGACATGGTCTTACA-AAGGCGCAAATATCATCGCCGATGCCATGTTCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACAGAA-GC-CAAATATCATCGCCGATGCCATGTCCCAGAC
* * ** *
13755770 ATGGTCTTACACAGGCACATATATCAGCGCCGATGCCATGTCCTTGACATGGTCTTACATAGGCA
64 ATGGTCTTACACAGGCACACATATCAGCGCCGATGCCATATCCCAGACATGGTCTTACACAGGCA
* **
13755835 CACATCTCAGATGTTG
129 CACATATCA-ATGCCG
*
13755851 ATACCATGTCCCAGACATGGTCTTACA
1 ATGCCATGTCCCAGACATGGTCTTACA
13755878 CGAAATCTCA
Statistics
Matches: 152, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
142 2 0.01
143 1 0.01
144 119 0.78
145 28 0.18
146 2 0.01
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (143 bp):
ATGCCATGTCCCAGACATGGTCTTACAGAAGCCAAATATCATCGCCGATGCCATGTCCCAGACAT
GGTCTTACACAGGCACACATATCAGCGCCGATGCCATATCCCAGACATGGTCTTACACAGGCACA
CATATCAATGCCG
Found at i:13760161 original size:27 final size:27
Alignment explanation
Indices: 13760125--13760181 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
13760115 CAGTATGTCA
* *
13760125 TTAACTTATAAAATCAAATATAAAACT
1 TTAACATATAAAACCAAATATAAAACT
13760152 TTAACATATAAAACCAAATATAAAACT
1 TTAACATATAAAACCAAATATAAAACT
13760179 TTA
1 TTA
13760182 CTCCCACTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (27 bp):
TTAACATATAAAACCAAATATAAAACT
Found at i:13760162 original size:15 final size:14
Alignment explanation
Indices: 13760140--13760181 Score: 52
Period size: 12 Copynumber: 3.1 Consensus size: 14
13760130 TTATAAAATC
13760140 AAATATAAAACTTT
1 AAATATAAAACTTT
*
13760154 AACATATAAAAC--C
1 AA-ATATAAAACTTT
13760167 AAATATAAAACTTT
1 AAATATAAAACTTT
13760181 A
1 A
13760182 CTCCCACTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
12 9 0.39
13 2 0.09
14 3 0.13
15 9 0.39
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.29
Consensus pattern (14 bp):
AAATATAAAACTTT
Found at i:13765009 original size:26 final size:26
Alignment explanation
Indices: 13764980--13765087 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
13764970 TGGTACAAAT
13764980 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
13765006 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
13765032 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
13765058 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
13765084 TGAT
1 TGAT
13765088 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:13766624 original size:26 final size:25
Alignment explanation
Indices: 13766572--13766624 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 25
13766562 TTTACAGTTT
13766572 TACCCCTAGTAGGTAAATTACCGAAA
1 TACCCCTAG-AGGTAAATTACCGAAA
*
13766598 TACCCCTAG-GGTTAAATTGACCTAAA
1 TACCCCTAGAGG-TAAATT-ACCGAAA
13766624 T
1 T
13766625 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 2 0.08
25 6 0.25
26 16 0.67
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (25 bp):
TACCCCTAGAGGTAAATTACCGAAA
Found at i:13772102 original size:26 final size:26
Alignment explanation
Indices: 13772063--13772170 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
13772053 TGGTACAAAT
13772063 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
13772089 TTATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
13772115 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
13772141 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
13772167 TGAT
1 TGAT
13772171 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.07, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:13776602 original size:15 final size:15
Alignment explanation
Indices: 13776582--13776611 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
13776572 GACTCTCAAG
*
13776582 AAAATAGAATTAGAA
1 AAAATAGAAATAGAA
13776597 AAAATAGAAATAGAA
1 AAAATAGAAATAGAA
13776612 TTTTTAGGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.13, T:0.17
Consensus pattern (15 bp):
AAAATAGAAATAGAA
Found at i:13781934 original size:44 final size:43
Alignment explanation
Indices: 13781818--13781942 Score: 198
Period size: 43 Copynumber: 2.9 Consensus size: 43
13781808 TATTTGAAAA
13781818 AAACGCCGCTAAAGGTCATGGCCTTTAGCGGCGCTTTTACCAC
1 AAACGCCGCTAAAGGTCATGGCCTTTAGCGGCGCTTTTACCAC
* *
13781861 AAACGCCACTAAAGGTCATGGCCTTTAGCGACGCTTTT-CTCAC
1 AAACGCCGCTAAAGGTCATGGCCTTTAGCGGCGCTTTTAC-CAC
*
13781904 AAACGCCGCTAAAAGGTTATGGCCTTTAGCGGCGCTTTT
1 AAACGCCGCT-AAAGGTCATGGCCTTTAGCGGCGCTTTT
13781943 TGACTTTTGC
Statistics
Matches: 75, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
42 1 0.01
43 48 0.64
44 26 0.35
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTAAAGGTCATGGCCTTTAGCGGCGCTTTTACCAC
Found at i:13783255 original size:44 final size:43
Alignment explanation
Indices: 13783133--13783257 Score: 196
Period size: 43 Copynumber: 2.9 Consensus size: 43
13783123 TATTTGAAAA
13783133 AAACGCCGCTAAAGGTCATGGCCTTTAGCGGCGCTTTTACCAC
1 AAACGCCGCTAAAGGTCATGGCCTTTAGCGGCGCTTTTACCAC
* * *
13783176 AAACGCCACTAAAGGTCATGGCCTTTAGCGACGCTTTTCCCAC
1 AAACGCCGCTAAAGGTCATGGCCTTTAGCGGCGCTTTTACCAC
* *
13783219 AAACGCCGCTAAAAGGTTATGGCCTTTAGTGGCGCTTTT
1 AAACGCCGCT-AAAGGTCATGGCCTTTAGCGGCGCTTTT
13783258 TGACTTTTGC
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
43 49 0.66
44 25 0.34
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTAAAGGTCATGGCCTTTAGCGGCGCTTTTACCAC
Found at i:13784533 original size:44 final size:43
Alignment explanation
Indices: 13784417--13784566 Score: 198
Period size: 43 Copynumber: 3.5 Consensus size: 43
13784407 TATTTGAAAA
*
13784417 AAACGCCG-TTAAAGGTCATGGCCTTTAGCGGCGCTTTTACCAC
1 AAACGCCGCTAAAAGGTCATGGCCTTTAGCGGCGCTTTT-CCAC
* *
13784460 AAACGCCACT-AAAGGTCATGGCCTTTAGCGACGCTTTTCTCAC
1 AAACGCCGCTAAAAGGTCATGGCCTTTAGCGGCGCTTTTC-CAC
*
13784503 AAACGCCGCTAAAAGGTTATGGCCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAAGGTCATGGCCTTTAGCGGCGCTTTT-CCAC
* *
13784547 AAATGCTGCTAAAA-GTCATG
1 AAACGCCGCTAAAAGGTCATG
13784567 AAATTTTAAA
Statistics
Matches: 95, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
42 1 0.01
43 51 0.54
44 42 0.44
45 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTAAAAGGTCATGGCCTTTAGCGGCGCTTTTCCAC
Found at i:13784748 original size:19 final size:19
Alignment explanation
Indices: 13784703--13784749 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
13784693 ATCAAATTAA
*
13784703 AATAAAAATAAAAATATAG
1 AATAAAAATAAAAATAAAG
* *
13784722 AATCAAAACT-AAAATAAAT
1 AAT-AAAAATAAAAATAAAG
13784741 AATAAAAAT
1 AATAAAAAT
13784750 TAGATTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 5 0.22
19 13 0.57
20 5 0.22
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (19 bp):
AATAAAAATAAAAATAAAG
Found at i:13788979 original size:7 final size:7
Alignment explanation
Indices: 13788967--13789074 Score: 60
Period size: 7 Copynumber: 15.1 Consensus size: 7
13788957 ACTAATTAAT
13788967 CTAAACC
1 CTAAACC
13788974 CTAAACC
1 CTAAACC
*
13788981 TCTTAACCC
1 -C-TAAACC
*
13788990 CT-ATCC
1 CTAAACC
*
13788996 CATAAACA
1 C-TAAACC
*
13789004 CTAAACT
1 CTAAACC
13789011 CTAAACC
1 CTAAACC
*
13789018 CTTAACC
1 CTAAACC
*
13789025 CTTAACC
1 CTAAACC
*
13789032 CCAAACC
1 CTAAACC
*
13789039 CTTACACC
1 C-TAAACC
*
13789047 TTAAACTC
1 CTAAAC-C
13789055 C--AACC
1 CTAAACC
*
13789060 CTAACCC
1 CTAAACC
13789067 CTAAACC
1 CTAAACC
13789074 C
1 C
13789075 ATAATTCATC
Statistics
Matches: 77, Mismatches: 16, Indels: 16
0.71 0.15 0.15
Matches are distributed among these distances:
5 2 0.03
6 7 0.09
7 53 0.69
8 10 0.13
9 5 0.06
ACGTcount: A:0.36, C:0.44, G:0.00, T:0.20
Consensus pattern (7 bp):
CTAAACC
Found at i:13789143 original size:21 final size:21
Alignment explanation
Indices: 13789117--13789201 Score: 89
Period size: 21 Copynumber: 3.9 Consensus size: 21
13789107 ACTCCTAAAC
*
13789117 CTTAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
* * *
13789138 CTTAAACTATAGTTAACTCATAAAC
1 CTTAAACCATA---AAC-CATATAT
*
13789163 CTTAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
13789184 CTTAAACCATAAACCATA
1 CTTAAACCATAAACCATA
13789202 AACTATAATG
Statistics
Matches: 51, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
21 31 0.61
22 3 0.06
24 3 0.06
25 14 0.27
ACGTcount: A:0.45, C:0.26, G:0.01, T:0.28
Consensus pattern (21 bp):
CTTAAACCATAAACCATATAT
Found at i:13789154 original size:46 final size:46
Alignment explanation
Indices: 13789101--13789190 Score: 171
Period size: 46 Copynumber: 2.0 Consensus size: 46
13789091 CTTCAAATAC
*
13789101 TAGTTAACTCCTAAACCTTAAACCCTAAACCATATATCTTAAACTA
1 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACTA
13789147 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAAC
1 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAAC
13789191 CATAAACCAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.42, C:0.26, G:0.02, T:0.30
Consensus pattern (46 bp):
TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACTA
Found at i:13789170 original size:7 final size:7
Alignment explanation
Indices: 13789156--13789209 Score: 54
Period size: 7 Copynumber: 7.7 Consensus size: 7
13789146 ATAGTTAACT
13789156 CATAAAC
1 CATAAAC
*
13789163 CTTAAAC
1 CATAAAC
*
13789170 CCTAAAC
1 CATAAAC
* *
13789177 CATATAT
1 CATAAAC
*
13789184 CTTAAAC
1 CATAAAC
13789191 CATAAAC
1 CATAAAC
13789198 CATAAAC
1 CATAAAC
*
13789205 TATAA
1 CATAA
13789210 TGATAATTAA
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (7 bp):
CATAAAC
Found at i:13789508 original size:81 final size:81
Alignment explanation
Indices: 13789373--13789609 Score: 309
Period size: 81 Copynumber: 2.9 Consensus size: 81
13789363 TAGCGGCGTT
* *
13789373 TTTCCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC
1 TTTCCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCATTTTTCCAAAAGCGCCGCTAATGCTC
**
13789438 TGGTTTTTAGCGGTGC
66 TGGTTTTTAGCGGCAC
*
13789454 TTTCCAAAAGCGCCACTAATGCTCTGGTTTTTAGCGGCATTTTTCCAAAAGCGCCGCTAATGCTC
1 TTTCCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCATTTTTCCAAAAGCGCCGCTAATGCTC
*
13789519 TGGTTTTTAGCGGCAT
66 TGGTTTTTAGCGGCAC
* * * * * * *
13789535 TTTGCAAAAAGCGCCGCTAATGCTCT-ATTTTTTGTGGCGTTTTTTACTAAAA-CGCCGCTATTG
1 TTT-CCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGC-ATTTTT-CCAAAAGCGCCGCTAATG
13789598 CTCT-GTTTTTAG
63 CTCTGGTTTTTAG
13789610 TGGCGTTTTT
Statistics
Matches: 139, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
81 95 0.68
82 39 0.28
83 5 0.04
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (81 bp):
TTTCCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCATTTTTCCAAAAGCGCCGCTAATGCTC
TGGTTTTTAGCGGCAC
Found at i:13789619 original size:41 final size:41
Alignment explanation
Indices: 13789360--13789619 Score: 348
Period size: 41 Copynumber: 6.4 Consensus size: 41
13789350 GTTATATGAC
13789360 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
*
13789401 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
* * *
13789442 TTTTAGCGGTG-CTTTCCAAAAGCGCCACTAATGCTCTGGT
1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
*
13789482 TTTTAGCGGCATTTTTCCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
* * * *
13789523 TTTTAGCGGCATTTTGCAAAAAGCGCCGCTAATGCTCT-AT
1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
* * * *
13789563 TTTTTGTGGCGTTTTTTACTAAAA-CGCCGCTATTGCTCT-GT
1 TTTTAGCGGCG-TTTTT-CCAAAAGCGCCGCTAATGCTCTGGT
*
13789604 TTTTAGTGGCGTTTTT
1 TTTTAGCGGCGTTTTT
13789620 GGTAAAACGC
Statistics
Matches: 196, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
40 49 0.25
41 142 0.72
42 5 0.03
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.37
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGT
Found at i:13789649 original size:41 final size:41
Alignment explanation
Indices: 13789360--13789649 Score: 172
Period size: 41 Copynumber: 7.1 Consensus size: 41
13789350 GTTATATGAC
* * *
13789360 TTTTAGCGGCG-TTTTT-CCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGTGGCGTTTTTTACTAAAA-CGCCGCTATTGCTCT-GT
* * *
13789401 TTTTAGCGGCG--TTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGTGGCGTTTTTTACTAAAA-CGCCGCTATTGCTCT-GT
* ** * * *
13789442 TTTTAG-CG-GTGCTTT-CCAAAAGCGCCACTAATGCTCTGGT
1 TTTTAGTGGCGTTTTTTACTAAAA-CGCCGCTATTGCTCT-GT
* * * *
13789482 TTTTAGCGGC-ATTTTT-CCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGTGGCGTTTTTTACTAAAA-CGCCGCTATTGCTCT-GT
* * * * * *
13789523 TTTTAGCGGC--ATTTTGCAAAAAGCGCCGCTAATGCTCTAT
1 TTTTAGTGGCGTTTTTTACTAAAA-CGCCGCTATTGCTCTGT
*
13789563 TTTTTGTGGCGTTTTTTACTAAAACGCCGCTATTGCTCTGT
1 TTTTAGTGGCGTTTTTTACTAAAACGCCGCTATTGCTCTGT
** *
13789604 TTTTAGTGGCG-TTTTTGGTAAAACGCCGCTATTGCTATGT
1 TTTTAGTGGCGTTTTTTACTAAAACGCCGCTATTGCTCTGT
13789644 GTTTTA
1 -TTTTA
13789650 CAATTTTTGC
Statistics
Matches: 218, Mismatches: 22, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
39 1 0.00
40 74 0.34
41 134 0.61
42 9 0.04
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (41 bp):
TTTTAGTGGCGTTTTTTACTAAAACGCCGCTATTGCTCTGT
Found at i:13789884 original size:26 final size:26
Alignment explanation
Indices: 13789849--13789956 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
13789839 TGAAATGCCC
13789849 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
13789875 ATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
13789901 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
13789927 ATCATGGAACATTTACCTAAGCCATT
1 ATCATGGAACATTTACCTAAACCATT
13789953 ATCA
1 ATCA
13789957 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:13795752 original size:26 final size:26
Alignment explanation
Indices: 13795716--13795767 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13795706 CACCACTGAA
* *
13795716 TCGGGGAATCATCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
13795742 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
13795768 CTTTTCATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.21, T:0.15
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:13795844 original size:70 final size:71
Alignment explanation
Indices: 13795728--13795878 Score: 241
Period size: 72 Copynumber: 2.1 Consensus size: 71
13795718 GGGGAATCAT
*
13795728 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTT-CATTTCAAATATACAATGG
1 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATACAATGG
13795792 ATATCG
66 ATATCG
* ***
13795798 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATACAATG
13795863 GATATCG
65 GATATCG
13795870 CACTTAGCA
1 CACTTAGCA
13795879 CCACCAATGA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 16 0.22
71 28 0.38
72 30 0.41
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (71 bp):
CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATACAATGG
ATATCG
Found at i:13795921 original size:104 final size:104
Alignment explanation
Indices: 13795797--13796020 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
13795787 AATGGATATC
13795797 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
13795862 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
13795901 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
13795966 GGATCACGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
**
13796005 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
13796021 TTTATATACA
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:13799717 original size:26 final size:26
Alignment explanation
Indices: 13799685--13799792 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
13799675 TGAAATGCCC
*
13799685 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
13799711 ATTATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
13799737 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
13799763 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
13799789 ATCA
1 ATCA
13799793 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:13802314 original size:31 final size:31
Alignment explanation
Indices: 13802279--13802341 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
13802269 TAGCCCCTAA
13802279 GCTCGTAAAATAAATTTCATTCAATTTCTTT
1 GCTCGTAAAATAAATTTCATTCAATTTCTTT
13802310 GCTCGTAAAATAAATTTCATTCAATTTCTTT
1 GCTCGTAAAATAAATTTCATTCAATTTCTTT
13802341 G
1 G
13802342 TACTTTAAGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.44
Consensus pattern (31 bp):
GCTCGTAAAATAAATTTCATTCAATTTCTTT
Found at i:13803769 original size:30 final size:30
Alignment explanation
Indices: 13803723--13803785 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
13803713 TTCAATCTTC
13803723 CCTACTGTTCAATAGAATTTCTATGGTAAT
1 CCTACTGTTCAATAGAATTTCTATGGTAAT
* *
13803753 CCTATTGTTTAATAGAATTTCTATGGTAAT
1 CCTACTGTTCAATAGAATTTCTATGGTAAT
13803783 CCT
1 CCT
13803786 CCAATAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.43
Consensus pattern (30 bp):
CCTACTGTTCAATAGAATTTCTATGGTAAT
Found at i:13821938 original size:16 final size:16
Alignment explanation
Indices: 13821926--13822012 Score: 95
Period size: 16 Copynumber: 5.4 Consensus size: 16
13821916 ATACAACACA
*
13821926 CACATACTACAACTTG
1 CACATACTACAACTCG
13821942 CACATACTACAACAT-G
1 CACATACTACAAC-TCG
** *
13821958 TGCATACTACAGCTCG
1 CACATACTACAACTCG
* *
13821974 CACATACTACGACTCA
1 CACATACTACAACTCG
13821990 CACATACTACAACTCG
1 CACATACTACAACTCG
*
13822006 TACATAC
1 CACATAC
13822013 AATAGCTAAC
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
15 1 0.02
16 56 0.97
17 1 0.02
ACGTcount: A:0.37, C:0.33, G:0.08, T:0.22
Consensus pattern (16 bp):
CACATACTACAACTCG
Found at i:13821954 original size:32 final size:32
Alignment explanation
Indices: 13821917--13822012 Score: 111
Period size: 32 Copynumber: 3.0 Consensus size: 32
13821907 ACTAAACCAA
*
13821917 TACAACACACACATACTACAACTTGCACATAC
1 TACAACACACACATACTACAACTCGCACATAC
**** *
13821949 TACAACATGTGCATACTACAGCTCGCACATAC
1 TACAACACACACATACTACAACTCGCACATAC
* * *
13821981 TACGACTCACACATACTACAACTCGTACATAC
1 TACAACACACACATACTACAACTCGCACATAC
13822013 AATAGCTAAC
Statistics
Matches: 50, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
32 50 1.00
ACGTcount: A:0.39, C:0.33, G:0.07, T:0.21
Consensus pattern (32 bp):
TACAACACACACATACTACAACTCGCACATAC
Found at i:13825694 original size:22 final size:22
Alignment explanation
Indices: 13825644--13825697 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
13825634 GCAAACTAAC
* * *
13825644 GAGCTCACAAAGCAGAAGTGAC
1 GAGCTCGCAAAACAGAAGTGAA
13825666 GAGCTCGCAAAACAGAAGTGAA
1 GAGCTCGCAAAACAGAAGTGAA
*
13825688 GATCTCGCAA
1 GAGCTCGCAA
13825698 TAAGGCCAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.41, C:0.22, G:0.26, T:0.11
Consensus pattern (22 bp):
GAGCTCGCAAAACAGAAGTGAA
Found at i:13830139 original size:19 final size:19
Alignment explanation
Indices: 13830080--13830143 Score: 69
Period size: 19 Copynumber: 3.3 Consensus size: 19
13830070 TACATAATAA
13830080 ATAATTAATAATAAAATGAT
1 ATAA-TAATAATAAAATGAT
* *
13830100 ATAGTAA-AATAAAAATAAT
1 ATAATAATAAT-AAAATGAT
13830119 ATAATGAATAATAAAA-GAT
1 ATAAT-AATAATAAAATGAT
13830138 ATAATA
1 ATAATA
13830144 TAGAATAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
18 4 0.11
19 21 0.57
20 9 0.24
21 3 0.08
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (19 bp):
ATAATAATAATAAAATGAT
Found at i:13830143 original size:27 final size:27
Alignment explanation
Indices: 13830073--13830143 Score: 67
Period size: 27 Copynumber: 2.6 Consensus size: 27
13830063 AAAATTATAC
13830073 ATAATAAATAAT-TAATAATAAAATGAT
1 ATAATAAA-AATATAATAATAAAATGAT
* * *
13830100 ATAGT-AAAATAAAAATAATATAATGA-
1 ATAATAAAAAT-ATAATAATAAAATGAT
13830126 ATAATAAAAGATATAATA
1 ATAATAAAA-ATATAATA
13830144 TAGAATAATT
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
25 3 0.09
26 6 0.17
27 24 0.69
28 2 0.06
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.30
Consensus pattern (27 bp):
ATAATAAAAATATAATAATAAAATGAT
Found at i:13831817 original size:90 final size:90
Alignment explanation
Indices: 13831701--13832026 Score: 463
Period size: 90 Copynumber: 3.6 Consensus size: 90
13831691 CCATGCTGAA
* * * * *
13831701 ATCTTTGATCTGTTCCCCGCCTAATACAGAGACGCCAAATCTACCATCTTCGATCTGCTTCAATG
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATCATCTTCGATCTGCTTCGATG
* *
13831766 TAAACACACAAATGTCAGATCTGCT
66 TAAACACACGAATGTCAAATCTGCT
* * * *
13831791 ATCCTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTACTTCGATG
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATCATCTTCGATCTGCTTCGATG
13831856 TAAACACACGAATGTCAAATCTGCT
66 TAAACACACGAATGTCAAATCTGCT
** * * *
13831881 ATCTTCGATCTGCTCCATGTCTATTACAGAGATGCCAAATCTGTCATCTTCGATCTGCTTCGATG
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATCATCTTCGATCTGCTTCGATG
*
13831946 TAAACATACGAATGTCAAATCTGCT
66 TAAACACACGAATGTCAAATCTGCT
* * * *
13831971 ATCTTTGATCTGCTCCCTGTCTAACACAGAGACGCCAAATCTATTATCTTCGATCT
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATCATCTTCGATCT
13832027 ACTTTGAATG
Statistics
Matches: 210, Mismatches: 26, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
90 210 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (90 bp):
ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATCATCTTCGATCTGCTTCGATG
TAAACACACGAATGTCAAATCTGCT
Found at i:13832010 original size:45 final size:45
Alignment explanation
Indices: 13831721--13832026 Score: 221
Period size: 45 Copynumber: 6.8 Consensus size: 45
13831711 TGTTCCCCGC
* * * * *
13831721 CTAATACAGAGACGCCAAATCTACCATCTTCGATCTGCTTCAATGT
1 CTAACACAGAGATGCCAAATCTGCTATCTTCGATCTGC-TCCATGT
* * * * * * * **
13831767 -AAACACACAAATGTCAGATCTGCTATCCTCAATCTGCTCCCCGT
1 CTAACACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCCATGT
* * * *
13831811 CTAATACAGAGACGCCAAATCTG-TCATCTTCGATCTACTTCGATGT
1 CTAACACAGAGATGCCAAATCTGCT-ATCTTCGATCTGC-TCCATGT
* *
13831857 -AAACACACGA-ATGTCAAATCTGCTATCTTCGATCTGCTCCATGT
1 CTAACACA-GAGATGCCAAATCTGCTATCTTCGATCTGCTCCATGT
** *
13831901 CTATTACAGAGATGCCAAATCTG-TCATCTTCGATCTGCTTCGATGT
1 CTAACACAGAGATGCCAAATCTGCT-ATCTTCGATCTGC-TCCATGT
* * * * *
13831947 -AAACATACGA-ATGTCAAATCTGCTATCTTTGATCTGCTCCCTGT
1 CTAACACA-GAGATGCCAAATCTGCTATCTTCGATCTGCTCCATGT
* **
13831991 CTAACACAGAGACGCCAAATCTATTATCTTCGATCT
1 CTAACACAGAGATGCCAAATCTGCTATCTTCGATCT
13832027 ACTTTGAATG
Statistics
Matches: 194, Mismatches: 53, Indels: 27
0.71 0.19 0.10
Matches are distributed among these distances:
44 21 0.11
45 157 0.81
46 16 0.08
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (45 bp):
CTAACACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCCATGT
Found at i:13832027 original size:180 final size:179
Alignment explanation
Indices: 13831721--13832360 Score: 883
Period size: 180 Copynumber: 3.6 Consensus size: 179
13831711 TGTTCCCCGC
** *
13831721 CTAATACAGAGACGCCAAATCTACCATCTTCGATCTGCTTCAATGTAAACACACAAATGTCAGAT
1 CTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCAATGTAAACACACGAATGTCAGAT
* * *
13831786 CTGCTATCCTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTACTT
66 CTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATCATCTTCGATCTACTT
*
13831851 CGATGTAAACACACGAATGTCAAATCTGCTATCTTCGATCTGCTCCATGT
131 CGATGTAAACACACGAATGTCAGATCTGCTATCTTCGATCTGCTCC-TGT
* * * * *
13831901 CTATTACAGAGATGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACATACGAATGTCAAAT
1 CTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCAATGTAAACACACGAATGTCAGAT
* * * *
13831966 CTGCTATCTTTGATCTGCTCCCTGTCTAACACAGAGACGCCAAATCTATTATCTTCGATCTAC-T
66 CTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATCATCTTCGATCTACTT
* *
13832030 ---T-T--------GAATGTCAGATATGTTATCTTCGATCTGCTCCCTGT
131 CGATGTAAACACACGAATGTCAGATCTGCTATCTTCGATCTGCT-CCTGT
* *
13832068 CTAATACAGAGACGTCAAATCTGTTATCTTCGATCTGCTTCAATGTAAACACACGAATGTCAGAT
1 CTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCAATGTAAACACACGAATGTCAGAT
* * * * *
13832133 CTGCTATCTTCGATCTGTTCCCCGTCTAATACAGAGACGCCAAATTTGTCATATTCGATCTGCTT
66 CTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATCATCTTCGATCTACTT
*
13832198 CGATGTAAACACACGAATGTCAGATCTACTATCTTCGATCTGCTCCTCGT
131 CGATGTAAACACACGAATGTCAGATCTGCTATCTTCGATCTGCTCCT-GT
* **
13832248 CTAATACAGAGATGCCAAATCTGTCATCTTTAATCTGCTTCAATGTAAACACACGAATGTCAGAT
1 CTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCAATGTAAACACACGAATGTCAGAT
* *
13832313 CTGCTATTTTCGATCTGCTCCCTGTCTAATACAGAGACGCCAAATCTA
66 CTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTA
13832361 CTATCAGTGA
Statistics
Matches: 398, Mismatches: 47, Indels: 30
0.84 0.10 0.06
Matches are distributed among these distances:
167 142 0.36
168 3 0.01
171 1 0.00
172 1 0.00
175 1 0.00
176 1 0.00
179 4 0.01
180 245 0.62
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (179 bp):
CTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCAATGTAAACACACGAATGTCAGAT
CTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTATCATCTTCGATCTACTT
CGATGTAAACACACGAATGTCAGATCTGCTATCTTCGATCTGCTCCTGT
Found at i:13832087 original size:77 final size:77
Alignment explanation
Indices: 13831955--13832103 Score: 235
Period size: 77 Copynumber: 1.9 Consensus size: 77
13831945 GTAAACATAC
* *
13831955 GAATGTCAAATCTGCTATCTTTGATCTGCTCCCTGTCTAACACAGAGACGCCAAATCTATTATCT
1 GAATGTCAAATATGCTATCTTCGATCTGCTCCCTGTCTAACACAGAGACGCCAAATCTATTATCT
13832020 TCGATCTACTTT
66 TCGATCTACTTT
* * * * *
13832032 GAATGTCAGATATGTTATCTTCGATCTGCTCCCTGTCTAATACAGAGACGTCAAATCTGTTATCT
1 GAATGTCAAATATGCTATCTTCGATCTGCTCCCTGTCTAACACAGAGACGCCAAATCTATTATCT
13832097 TCGATCT
66 TCGATCT
13832104 GCTTCAATGT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
77 65 1.00
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.36
Consensus pattern (77 bp):
GAATGTCAAATATGCTATCTTCGATCTGCTCCCTGTCTAACACAGAGACGCCAAATCTATTATCT
TCGATCTACTTT
Found at i:13832135 original size:45 final size:45
Alignment explanation
Indices: 13832032--13832331 Score: 200
Period size: 45 Copynumber: 6.7 Consensus size: 45
13832022 GATCTACTTT
* ** * *
13832032 GAATGTCAGATATGTTATCTTCGATCTGC-TCCCTGTCTAATACA
1 GAATGTCAGATCTGTTATCTTCGATCTGCTTCAATGTCAAACACA
* *
13832076 GAGACGTCAAATCTGTTATCTTCGATCTGCTTCAATGT-AAACACA
1 GA-ATGTCAGATCTGTTATCTTCGATCTGCTTCAATGTCAAACACA
* *** * *
13832121 CGAATGTCAGATCTGCTATCTTCGATCTG-TTCCCCGTCTAATACA
1 -GAATGTCAGATCTGTTATCTTCGATCTGCTTCAATGTCAAACACA
* * * * * * *
13832166 GAGACGCCAAATTTGTCATATTCGATCTGCTTCGATGT-AAACACA
1 GA-ATGTCAGATCTGTTATCTTCGATCTGCTTCAATGTCAAACACA
** * * *
13832211 CGAATGTCAGATCTACTATCTTCGATCTGC-TC-CTCGTCTAATACA
1 -GAATGTCAGATCTGTTATCTTCGATCTGCTTCAAT-GTCAAACACA
* * * **
13832256 GAGATGCCAAATCTGTCATCTTTAATCTGCTTCAATGT-AAACACA
1 GA-ATGTCAGATCTGTTATCTTCGATCTGCTTCAATGTCAAACACA
* *
13832301 CGAATGTCAGATCTGCTATTTTCGATCTGCT
1 -GAATGTCAGATCTGTTATCTTCGATCTGCT
13832332 CCCTGTCTAA
Statistics
Matches: 188, Mismatches: 55, Indels: 25
0.70 0.21 0.09
Matches are distributed among these distances:
43 1 0.01
44 15 0.08
45 151 0.80
46 20 0.11
47 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (45 bp):
GAATGTCAGATCTGTTATCTTCGATCTGCTTCAATGTCAAACACA
Found at i:13832190 original size:90 final size:90
Alignment explanation
Indices: 13832032--13832359 Score: 512
Period size: 90 Copynumber: 3.6 Consensus size: 90
13832022 GATCTACTTT
* * * * *
13832032 GAATGTCAGATATGTTATCTTCGATCTGCTCCCTGTCTAATACAGAGACGTCAAATCTGTTATCT
1 GAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCT
13832097 TCGATCTGCTTCAATGTAAACACAC
66 TCGATCTGCTTCAATGTAAACACAC
* * *
13832122 GAATGTCAGATCTGCTATCTTCGATCTGTTCCCCGTCTAATACAGAGACGCCAAATTTGTCATAT
1 GAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCT
*
13832187 TCGATCTGCTTCGATGTAAACACAC
66 TCGATCTGCTTCAATGTAAACACAC
* * *
13832212 GAATGTCAGATCTACTATCTTCGATCTGCTCCTCGTCTAATACAGAGATGCCAAATCTGTCATCT
1 GAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCT
**
13832277 TTAATCTGCTTCAATGTAAACACAC
66 TCGATCTGCTTCAATGTAAACACAC
* *
13832302 GAATGTCAGATCTGCTATTTTCGATCTGCTCCCTGTCTAATACAGAGACGCCAAATCT
1 GAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCT
13832360 ACTATCAGTG
Statistics
Matches: 215, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
90 215 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (90 bp):
GAATGTCAGATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCT
TCGATCTGCTTCAATGTAAACACAC
Found at i:13832232 original size:257 final size:257
Alignment explanation
Indices: 13831776--13832269 Score: 765
Period size: 257 Copynumber: 1.9 Consensus size: 257
13831766 TAAACACACA
*
13831776 AATGTCAGATCTGCTATCCTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTT
1 AATGTCAGATATGCTATCCTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTT
* * *
13831841 CGATCTACTTCGATGTAAACACACGAATGTCAAATCTGCTATCTTCGATCTGCTCCATGTCTATT
66 CGATCTACTTCAATGTAAACACACGAATGTCAAATCTGCTATCTTCGATCTGCTCCACGTCTAAT
* * * *
13831906 ACAGAGATGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACATACGAATGTCAAATCTGCT
131 ACAGAGACGCCAAATCTGTCATATTCGATCTGCTTCGATGTAAACACACGAATGTCAAATCTACT
*
13831971 ATCTTTGATCTGCTCC-CTGTCTAACACAGAGACGCCAAATCTATTATCTTCGATCTACTTTG
196 ATCTTCGATCTGCTCCTC-GTCTAACACAGAGACGCCAAATCTATTATCTTCGATCTACTTTG
* * * * * *
13832033 AATGTCAGATATGTTATCTTCGATCTGCTCCCTGTCTAATACAGAGACGTCAAATCTGTTATCTT
1 AATGTCAGATATGCTATCCTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTT
* * * *
13832098 CGATCTGCTTCAATGTAAACACACGAATGTCAGATCTGCTATCTTCGATCTGTTCCCCGTCTAAT
66 CGATCTACTTCAATGTAAACACACGAATGTCAAATCTGCTATCTTCGATCTGCTCCACGTCTAAT
* *
13832163 ACAGAGACGCCAAATTTGTCATATTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCTACT
131 ACAGAGACGCCAAATCTGTCATATTCGATCTGCTTCGATGTAAACACACGAATGTCAAATCTACT
* *
13832228 ATCTTCGATCTGCTCCTCGTCTAATACAGAGATGCCAAATCT
196 ATCTTCGATCTGCTCCTCGTCTAACACAGAGACGCCAAATCT
13832270 GTCATCTTTA
Statistics
Matches: 213, Mismatches: 23, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
257 212 1.00
258 1 0.00
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (257 bp):
AATGTCAGATATGCTATCCTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTT
CGATCTACTTCAATGTAAACACACGAATGTCAAATCTGCTATCTTCGATCTGCTCCACGTCTAAT
ACAGAGACGCCAAATCTGTCATATTCGATCTGCTTCGATGTAAACACACGAATGTCAAATCTACT
ATCTTCGATCTGCTCCTCGTCTAACACAGAGACGCCAAATCTATTATCTTCGATCTACTTTG
Found at i:13832356 original size:347 final size:347
Alignment explanation
Indices: 13831701--13832365 Score: 1073
Period size: 347 Copynumber: 1.9 Consensus size: 347
13831691 CCATGCTGAA
* *
13831701 ATCTTTGATCTGTTCCCCGCCTAATACAGAGACGCCAAATCTACCATCTTCGATCTGCTTCAATG
1 ATCTTCGATCTGCTCCCCGCCTAATACAGAGACGCCAAATCTACCATCTTCGATCTGCTTCAATG
13831766 TAAACACACAAATGTCAGATCTGCTATCCTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAAT
66 TAAACACACAAATGTCAGATCTGCTATCCTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAAT
* *
13831831 CTGTCATCTTCGATCTACTTCGATGTAAACACACGAATGTCAAATCTGCTATCTTCGATCTGCTC
131 CTGTCATATTCGATCTACTTCGATGTAAACACACGAATGTCAAATCTACTATCTTCGATCTGCTC
* * * *
13831896 CATGTCTATTACAGAGATGCCAAATCTGTCATCTTCGATCTGCTTCGATGTAAACATACGAATGT
196 CATGTCTAATACAGAGATGCCAAATCTGTCATCTTCAATCTGCTTCAATGTAAACACACGAATGT
*
13831961 CAAATCTGCTATCTTTGATCTGCTCCCTGTCTAACACAGAGACGCCAAATCTATTATCTTCGATC
261 CAAATCTGCTATCTTTGATCTGCTCCCTGTCTAACACAGAGACGCCAAATCTACTATCTTCGATC
13832026 TACTTTGAATGTCAGATATGTT
326 TACTTTGAATGTCAGATATGTT
* * * ***
13832048 ATCTTCGATCTGCTCCCTGTCTAATACAGAGACGTCAAATCTGTTATCTTCGATCTGCTTCAATG
1 ATCTTCGATCTGCTCCCCGCCTAATACAGAGACGCCAAATCTACCATCTTCGATCTGCTTCAATG
* * * *
13832113 TAAACACACGAATGTCAGATCTGCTATCTTCGATCTGTTCCCCGTCTAATACAGAGACGCCAAAT
66 TAAACACACAAATGTCAGATCTGCTATCCTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAAT
* * *
13832178 TTGTCATATTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCTACTATCTTCGATCTGCTC
131 CTGTCATATTCGATCTACTTCGATGTAAACACACGAATGTCAAATCTACTATCTTCGATCTGCTC
*
13832243 C-TCGTCTAATACAGAGATGCCAAATCTGTCATCTTTAATCTGCTTCAATGTAAACACACGAATG
196 CAT-GTCTAATACAGAGATGCCAAATCTGTCATCTTCAATCTGCTTCAATGTAAACACACGAATG
* *
13832307 TCAGATCTGCTAT-TTTCGATCTGCTCCCTGTCTAATACAGAGACGCCAAATCTACTATC
260 TCAAATCTGCTATCTTT-GATCTGCTCCCTGTCTAACACAGAGACGCCAAATCTACTATC
13832366 AGTGATCTAC
Statistics
Matches: 291, Mismatches: 25, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
346 4 0.01
347 287 0.99
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (347 bp):
ATCTTCGATCTGCTCCCCGCCTAATACAGAGACGCCAAATCTACCATCTTCGATCTGCTTCAATG
TAAACACACAAATGTCAGATCTGCTATCCTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAAT
CTGTCATATTCGATCTACTTCGATGTAAACACACGAATGTCAAATCTACTATCTTCGATCTGCTC
CATGTCTAATACAGAGATGCCAAATCTGTCATCTTCAATCTGCTTCAATGTAAACACACGAATGT
CAAATCTGCTATCTTTGATCTGCTCCCTGTCTAACACAGAGACGCCAAATCTACTATCTTCGATC
TACTTTGAATGTCAGATATGTT
Found at i:13841472 original size:46 final size:47
Alignment explanation
Indices: 13841404--13841494 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 47
13841394 GGAAGAGATG
13841404 CCCAATCAAAACTTCCGCAATGATAAAGGACTTCATTAGGAGCCATC
1 CCCAATCAAAACTTCCGCAATGATAAAGGACTTCATTAGGAGCCATC
13841451 CCCAATC-AAACTTCCGCAATGATAAAGGACTTCATTAGGAGCCA
1 CCCAATCAAAACTTCCGCAATGATAAAGGACTTCATTAGGAGCCA
13841495 CCCAAGGGGC
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
46 37 0.84
47 7 0.16
ACGTcount: A:0.36, C:0.27, G:0.15, T:0.21
Consensus pattern (47 bp):
CCCAATCAAAACTTCCGCAATGATAAAGGACTTCATTAGGAGCCATC
Found at i:13844024 original size:23 final size:24
Alignment explanation
Indices: 13843984--13844038 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 24
13843974 AATATATGAA
*
13843984 AATATATTATATGATATAATAA-CTT
1 AATATA-TATATGATATAA-AATATT
*
13844009 AATATATATAT-TTATAAAATATT
1 AATATATATATGATATAAAATATT
13844032 AATATAT
1 AATATAT
13844039 TAAATAGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 2 0.07
23 14 0.52
24 5 0.19
25 6 0.22
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (24 bp):
AATATATATATGATATAAAATATT
Found at i:13844190 original size:18 final size:20
Alignment explanation
Indices: 13844158--13844221 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
13844148 TACATAATAA
*
13844158 ATAATTAATAATAAAATGAT
1 ATAATGAATAATAAAATGAT
* *
13844178 ATAGT-AA-AATAAAAATAAT
1 ATAATGAATAAT-AAAATGAT
*
13844197 ATAATGAATAATAAAAAGAT
1 ATAATGAATAATAAAATGAT
13844217 ATAAT
1 ATAAT
13844222 ATAGAGTAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
18 3 0.08
19 13 0.36
20 17 0.47
21 3 0.08
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (20 bp):
ATAATGAATAATAAAATGAT
Found at i:13844198 original size:19 final size:21
Alignment explanation
Indices: 13844153--13844221 Score: 67
Period size: 19 Copynumber: 3.5 Consensus size: 21
13844143 AATTATACAT
*
13844153 AATAA-ATAATTAATAAT-AA
1 AATAATATAATGAATAATAAA
* *
13844172 AATGATATAGT-AA-AATAAA
1 AATAATATAATGAATAATAAA
13844191 AATAATATAATGAATAATAAA
1 AATAATATAATGAATAATAAA
*
13844212 AA-GATATAAT
1 AATAATATAAT
13844222 ATAGAGTAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
18 3 0.07
19 17 0.41
20 13 0.32
21 8 0.20
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (21 bp):
AATAATATAATGAATAATAAA
Found at i:13851693 original size:22 final size:23
Alignment explanation
Indices: 13851665--13851716 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
13851655 TTTTTGAATT
13851665 AAAAAAAT-ATATCAA-ACATTCC
1 AAAAAAATAATATCAAGA-ATTCC
*
13851687 AAAAAAATCAATATCAAGAATTTC
1 AAAAAAAT-AATATCAAGAATTCC
13851711 AAAAAA
1 AAAAAA
13851717 TTAAAAGGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
22 8 0.31
24 17 0.65
25 1 0.04
ACGTcount: A:0.63, C:0.13, G:0.02, T:0.21
Consensus pattern (23 bp):
AAAAAAATAATATCAAGAATTCC
Found at i:13855818 original size:43 final size:43
Alignment explanation
Indices: 13855753--13855840 Score: 158
Period size: 43 Copynumber: 2.0 Consensus size: 43
13855743 AAGGAATGCT
*
13855753 TAGGATTCGAATATCATAACACCATGGTTAATGAGATCCCGTG
1 TAGGATTCGAATATCATAACACCATGGTTAATGAGATCCCATG
*
13855796 TAGGATTCGAATATCATGACACCATGGTTAATGAGATCCCATG
1 TAGGATTCGAATATCATAACACCATGGTTAATGAGATCCCATG
13855839 TA
1 TA
13855841 AGACCATGTC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (43 bp):
TAGGATTCGAATATCATAACACCATGGTTAATGAGATCCCATG
Found at i:13861097 original size:48 final size:47
Alignment explanation
Indices: 13861034--13861156 Score: 210
Period size: 48 Copynumber: 2.6 Consensus size: 47
13861024 GTATTGGCAC
13861034 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
13861081 TAAGAAAAGGAGTACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGA-TACCATGTAAGACCATGTTTGGAACATGGCATTTGG
**
13861129 TAAGATAAGGATATTATGTAAGACCATG
1 TAAGATAAGGATACCATGTAAGACCATG
13861157 CCAAGGCATG
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
47 25 0.35
48 46 0.65
ACGTcount: A:0.37, C:0.11, G:0.25, T:0.27
Consensus pattern (47 bp):
TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Done.