Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 47 of 362
Found at i:13861276 original size:55 final size:54
Alignment explanation
Indices: 13861144--13861323 Score: 181
Period size: 55 Copynumber: 3.3 Consensus size: 54
13861134 TAAGGATATT
* * **
13861144 ATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATCAGAGGAAAAAAT--C
1 ATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTAT-A-AGGCAAAGGTCCC
* ** *
13861198 ATATAAGACCATGTTAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCC
1 ATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGGCAAAGGTCCC
* *
13861253 ATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC-AAGGACGCC
1 ATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGCAAAGGTC-CC
*
13861306 ACT-TAAGACCATGTCAAG
1 A-TGTAAGACCATGCCAAG
13861324 ACACAACAAT
Statistics
Matches: 106, Mismatches: 15, Indels: 11
0.80 0.11 0.08
Matches are distributed among these distances:
52 5 0.05
53 31 0.29
54 34 0.32
55 36 0.34
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
ATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGCAAAGGTCCC
Found at i:13861317 original size:53 final size:55
Alignment explanation
Indices: 13861144--13861326 Score: 173
Period size: 54 Copynumber: 3.4 Consensus size: 55
13861134 TAAGGATATT
* * * * **
13861144 ATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTATCAGAGG-AAA-AAATC
1 ATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTAT-A-AGGCAAAGGACCC
* * *
13861198 ATATAAGACCATGTTAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCC
1 ATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGACCC
* * *
13861253 ATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTT-C-ATAAGGC-AAGGACGCC
1 ATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGAC-CC
13861306 ACT-TAAGACCATGTCAAGACA
1 A-TGTAAGACCATGTCAAGACA
13861327 CAACAATGGT
Statistics
Matches: 107, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
52 5 0.05
53 29 0.27
54 37 0.35
55 36 0.34
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (55 bp):
ATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGACCC
Found at i:13868989 original size:33 final size:33
Alignment explanation
Indices: 13868941--13869012 Score: 117
Period size: 33 Copynumber: 2.2 Consensus size: 33
13868931 ATAGAATCAA
13868941 TACAGTCTGGACCAAAGCCCTATTCAGTACCAG
1 TACAGTCTGGACCAAAGCCCTATTCAGTACCAG
* * *
13868974 TACAGTTTGGGCCAAAGCCCTATTCAGTATCAG
1 TACAGTCTGGACCAAAGCCCTATTCAGTACCAG
13869007 TACAGT
1 TACAGT
13869013 GCAAAATGCA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.25
Consensus pattern (33 bp):
TACAGTCTGGACCAAAGCCCTATTCAGTACCAG
Found at i:13875894 original size:15 final size:15
Alignment explanation
Indices: 13875864--13875902 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
13875854 TATGTTAACT
13875864 TAATATATATAAGTTA
1 TAATA-ATATAAGTTA
*
13875880 TAATAATATATGTTA
1 TAATAATATAAGTTA
13875895 TAATAATA
1 TAATAATA
13875903 ATATTTAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (15 bp):
TAATAATATAAGTTA
Found at i:13877128 original size:43 final size:43
Alignment explanation
Indices: 13877080--13877165 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
13877070 TATGTGATTG
13877080 ATATTGAAATGGAAAAGATGAGAAATGAATATGAAATGAGAAA
1 ATATTGAAATGGAAAAGATGAGAAATGAATATGAAATGAGAAA
* ** * *
13877123 ATATTGAAATGGCAATTATGAGAAATGATTATGAGATGAGAAA
1 ATATTGAAATGGAAAAGATGAGAAATGAATATGAAATGAGAAA
13877166 TGAAATATGA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.51, C:0.01, G:0.23, T:0.24
Consensus pattern (43 bp):
ATATTGAAATGGAAAAGATGAGAAATGAATATGAAATGAGAAA
Found at i:13879607 original size:59 final size:59
Alignment explanation
Indices: 13879515--13879639 Score: 241
Period size: 59 Copynumber: 2.1 Consensus size: 59
13879505 ATTCCACAGA
13879515 ACCTACATAGAAGAAGATGTGATAGCAAACATAATAACATGATGAATAATATTAGGTAT
1 ACCTACATAGAAGAAGATGTGATAGCAAACATAATAACATGATGAATAATATTAGGTAT
13879574 ACCTACATAGAAGAAGATGTGATAGCAAACATAATAACATGATGAATAATATTAGGTAT
1 ACCTACATAGAAGAAGATGTGATAGCAAACATAATAACATGATGAATAATATTAGGTAT
*
13879633 AACTACA
1 ACCTACA
13879640 GCATGGAGAG
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 65 1.00
ACGTcount: A:0.48, C:0.11, G:0.16, T:0.25
Consensus pattern (59 bp):
ACCTACATAGAAGAAGATGTGATAGCAAACATAATAACATGATGAATAATATTAGGTAT
Found at i:13881132 original size:22 final size:22
Alignment explanation
Indices: 13881107--13881157 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
13881097 TAAAGAAGTG
13881107 ATTAAAAACTAAAATTTAACTA
1 ATTAAAAACTAAAATTTAACTA
*
13881129 ATTAAAAGCTAAAATTTAACTA
1 ATTAAAAACTAAAATTTAACTA
*
13881151 AGTAAAA
1 ATTAAAA
13881158 TTAAATAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.59, C:0.08, G:0.04, T:0.29
Consensus pattern (22 bp):
ATTAAAAACTAAAATTTAACTA
Found at i:13883926 original size:17 final size:17
Alignment explanation
Indices: 13883885--13884000 Score: 151
Period size: 17 Copynumber: 6.5 Consensus size: 17
13883875 CAATGATATG
*
13883885 CAATCTTAGATGTGATA
1 CAATCTTAGATATGATA
13883902 TGCAATCTTAGATATGATA
1 --CAATCTTAGATATGATA
*
13883921 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
13883939 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
13883956 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
13883974 CAATCTTAGATATGATATA
1 CAATCTTAGATATG--ATA
13883993 CAATCTTA
1 CAATCTTA
13884001 AAATATATGA
Statistics
Matches: 88, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
17 31 0.35
18 31 0.35
19 25 0.28
20 1 0.01
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:13883947 original size:35 final size:35
Alignment explanation
Indices: 13883885--13884000 Score: 196
Period size: 35 Copynumber: 3.2 Consensus size: 35
13883875 CAATGATATG
*
13883885 CAATCTTAGATGTGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
13883921 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
13883956 CAATCTTAGATATGATTGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATTGCAATCTTAGATATG--ATA
13883993 CAATCTTA
1 CAATCTTA
13884001 AAATATATGA
Statistics
Matches: 77, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
35 51 0.66
36 15 0.19
37 11 0.14
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:13885379 original size:26 final size:26
Alignment explanation
Indices: 13885350--13885424 Score: 141
Period size: 26 Copynumber: 2.9 Consensus size: 26
13885340 TGATACAAAT
13885350 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
13885376 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
13885402 TGATAATGGGGTAGGTAAATGTT
1 TGATAATGGGTTAGGTAAATGTT
13885425 AAATGTTTCA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.31, C:0.05, G:0.29, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:13892814 original size:1 final size:1
Alignment explanation
Indices: 13892808--13892882 Score: 51
Period size: 1 Copynumber: 75.0 Consensus size: 1
13892798 CTTCTATTTC
* * * * * * * * * *
13892808 AAAAAAAAAAGAAAAAAAATAAAAAAAAGAGACAAAAAAGAAAAAAGAAAAAAGAAAAAAGAGAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
13892873 AAAAGAAAAA
1 AAAAAAAAAA
13892883 TGGAGAGGCC
Statistics
Matches: 52, Mismatches: 22, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
1 52 1.00
ACGTcount: A:0.85, C:0.01, G:0.12, T:0.01
Consensus pattern (1 bp):
A
Found at i:13892824 original size:7 final size:7
Alignment explanation
Indices: 13892808--13892882 Score: 75
Period size: 7 Copynumber: 10.4 Consensus size: 7
13892798 CTTCTATTTC
13892808 AAAA-AA
1 AAAAGAA
13892814 AAAAGAA
1 AAAAGAA
13892821 AAAA-AA
1 AAAAGAA
13892827 TAAAA-AA
1 -AAAAGAA
*
13892834 AAGAGACAA
1 AA-A-AGAA
13892843 AAAAGAA
1 AAAAGAA
13892850 AAAAGAA
1 AAAAGAA
13892857 AAAAGAAA
1 AAAAG-AA
13892865 AAAGAGAA
1 AAA-AGAA
13892873 AAAAGAA
1 AAAAGAA
13892880 AAA
1 AAA
13892883 TGGAGAGGCC
Statistics
Matches: 61, Mismatches: 1, Indels: 13
0.81 0.01 0.17
Matches are distributed among these distances:
6 8 0.13
7 35 0.57
8 12 0.20
9 6 0.10
ACGTcount: A:0.85, C:0.01, G:0.12, T:0.01
Consensus pattern (7 bp):
AAAAGAA
Found at i:13892824 original size:9 final size:9
Alignment explanation
Indices: 13892810--13892882 Score: 74
Period size: 9 Copynumber: 7.6 Consensus size: 9
13892800 TCTATTTCAA
13892810 AAAAAAAAG
1 AAAAAAAAG
*
13892819 AAAAAAAAT
1 AAAAAAAAG
13892828 AAAAAAAAG
1 AAAAAAAAG
13892837 AGACAAAAAAG
1 A-A-AAAAAAG
*
13892848 AAAAAAGAAAA
1 -AAAAA-AAAG
13892859 AAGAAAAAAG
1 AA-AAAAAAG
*
13892869 AGAAAAAAG
1 AAAAAAAAG
13892878 AAAAA
1 AAAAA
13892883 TGGAGAGGCC
Statistics
Matches: 53, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
9 28 0.53
10 10 0.19
11 14 0.26
12 1 0.02
ACGTcount: A:0.85, C:0.01, G:0.12, T:0.01
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:13892846 original size:30 final size:29
Alignment explanation
Indices: 13892811--13892882 Score: 94
Period size: 30 Copynumber: 2.4 Consensus size: 29
13892801 CTATTTCAAA
*
13892811 AAAAAAAGAAAAAA-AATAAAA-AAAAGAG
1 AAAAAAAGAAAAAAGAA-AAAAGAAAAAAG
13892839 ACAAAAAAGAAAAAAGAAAAAAGAAAAAAG
1 A-AAAAAAGAAAAAAGAAAAAAGAAAAAAG
13892869 AGAAAAAAGAAAAA
1 A-AAAAAAGAAAAA
13892883 TGGAGAGGCC
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 1 0.03
29 17 0.44
30 21 0.54
ACGTcount: A:0.85, C:0.01, G:0.12, T:0.01
Consensus pattern (29 bp):
AAAAAAAGAAAAAAGAAAAAAGAAAAAAG
Found at i:13894106 original size:166 final size:165
Alignment explanation
Indices: 13893829--13894191 Score: 473
Period size: 166 Copynumber: 2.2 Consensus size: 165
13893819 ACAAAATTTA
* * *
13893829 GCGCCTTAATCCCCTAAGCAGTAGGCTAACATGTTAAATTTGCAGATCTTATCTCCCTAAGCAGT
1 GCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGCAGT
*
13893894 AGTAGAGCAGATAGAAGACTCACCTTAATCCCCTAAGCAATAGGGTAAC-AAGTTCGCAGATCTT
66 AGTAGAGCAGATAGAAGACTCACCTTAATCCCCTAAGCAATAGGGTAACGAAATTCGCAGATCTT
* **
13893958 ATCTCCCTAAGCAGTAGCGGAGCAAATCGATGACGACT
131 A--TCCCTAAGAAGTAGCGGAGCAAATCGAAAACGA-T
*
13893996 -CGCCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGCAGT
1 GCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGCAGT
* * * * * *
13894060 AGTGGAGCAGATCGAAGAC-CTGCCTTAATCCTCTAAGCAGTAGGGTAACAGGTTAAATTTGCAG
66 AGTAGAGCAGATAGAAGACTC-ACCTTAATCCCCTAAGCAATAGGGTAAC--G--AAATTCGCAG
* *
13894124 ATCTTATCCCTAAGAAGTAGCGGAGCAGATCGAAAATGAT
126 ATCTTATCCCTAAGAAGTAGCGGAGCAAATCGAAAACGAT
*
13894164 GCACCTTAA-CCCCTAAGCAGTAGGGTAA
1 GCGCCTTAATCCCCTAAGCAGTAGGGTAA
13894192 TAGACTAAAG
Statistics
Matches: 171, Mismatches: 18, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
165 1 0.01
166 102 0.60
168 19 0.11
169 35 0.20
171 14 0.08
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (165 bp):
GCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGCAGT
AGTAGAGCAGATAGAAGACTCACCTTAATCCCCTAAGCAATAGGGTAACGAAATTCGCAGATCTT
ATCCCTAAGAAGTAGCGGAGCAAATCGAAAACGAT
Found at i:13894125 original size:84 final size:85
Alignment explanation
Indices: 13893830--13894191 Score: 438
Period size: 84 Copynumber: 4.3 Consensus size: 85
13893820 CAAAATTTAG
* *
13893830 CGCCTTAATCCCCTAAGCAGTAGGCTAACATGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
** *
13893895 GTAGAGCAGATAGAAGA-CT
66 GCGGAGCAGATCGAAGACCT
* * * *
13893914 CACCTTAATCCCCTAAGCAATAGGGTAAC-----AAGTTCGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* *
13893974 GCGGAGCAAATCGATGACGACT
66 GCGGAGCAGATCGAAGAC--CT
* *
13893996 CGCCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
13894061 GTGGAGCAGATCGAAGACCT
66 GCGGAGCAGATCGAAGACCT
* *
13894081 -GCCTTAATCCTCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTA--TCCCTAAGAAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* **
13894143 GCGGAGCAGATCGAAAATGAT
66 GCGGAGCAGATCGAAGA-CCT
*
13894164 GCACCTTAA-CCCCTAAGCAGTAGGGTAA
1 -CGCCTTAATCCCCTAAGCAGTAGGGTAA
13894192 TAGACTAAAG
Statistics
Matches: 238, Mismatches: 29, Indels: 22
0.82 0.10 0.08
Matches are distributed among these distances:
79 41 0.17
82 55 0.23
83 1 0.00
84 90 0.38
85 8 0.03
87 43 0.18
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (85 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
GCGGAGCAGATCGAAGACCT
Found at i:13894137 original size:41 final size:41
Alignment explanation
Indices: 13894006--13894143 Score: 106
Period size: 41 Copynumber: 3.3 Consensus size: 41
13893996 CGCCTTAATC
* *
13894006 CCCTAAGTAGTAGGGTAACAGGTTAAATTTACAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTA--T
* * * **
13894049 CCCTAAGCAGTAGTGG-AGCAGATCGAAGACCTGC----CTTAAT
1 CCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTGCAGATCTT-AT
13894089 CCTCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTAT
1 CC-CTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTAT
*
13894131 CCCTAAGAAGTAG
1 CCCTAAGCAGTAG
13894144 CGGAGCAGAT
Statistics
Matches: 72, Mismatches: 13, Indels: 22
0.67 0.12 0.21
Matches are distributed among these distances:
39 4 0.06
40 7 0.10
41 29 0.40
42 5 0.07
43 20 0.28
44 4 0.06
45 3 0.04
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (41 bp):
CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTAT
Found at i:13894598 original size:206 final size:206
Alignment explanation
Indices: 13894202--13894780 Score: 890
Period size: 206 Copynumber: 2.8 Consensus size: 206
13894192 TAGACTAAAG
* * * * * * *
13894202 CATAGCAGATCTCACCTTTAGATGTTTATACTGAAACAGATCCAAGATGATTTGGCATCCTTGTG
1 CATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTG
* ** * * *
13894267 CTTACAAGGAGCAAATCGAAGACATA-CTGATTTGGCTTTCACGTGTTTACGATGAACCAAATCT
66 CTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGTTTTTGCGTGCTTACGCTGAAGCAAATCT
* *
13894331 AAGATGATTTGACATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACA
131 AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGCCTCCATATTCGACA
*
13894396 GAGGGTAGACA
196 GAGGGCAGACA
*
13894407 CATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGGTTTAGTATCCTTGTG
1 CATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTG
* * * *
13894472 CTTACACGGAGCAAATTGAAGACATAGCTAATTTGGTTTTTGCGTGCTTACGCTGAAGCAAGTCT
66 CTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGTTTTTGCGTGCTTACGCTGAAGCAAATCT
* * *
13894537 TAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAATGTTTGGCGCCTCCATATTCGACG
131 AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGCCTCCATATTCGACA
13894602 GAGGGCAGACA
196 GAGGGCAGACA
* * * * *
13894613 CATAGTAGATCTAACCTTCAAATGATTAGACTGAAGTAGATCCTAGATGGTTTGGTATCTTTGTG
1 CATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTG
13894678 CTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGTTTTTGCGTGCTTACGCTGAAGCAAATCT
66 CTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGTTTTTGCGTGCTTACGCTGAAGCAAATCT
13894743 AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAAT
131 AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAAT
13894781 TGAAGAAGTA
Statistics
Matches: 338, Mismatches: 35, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
205 81 0.24
206 257 0.76
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (206 bp):
CATAGCAGATCTAACCTTCAGATGATTAGACTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTG
CTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGTTTTTGCGTGCTTACGCTGAAGCAAATCT
AAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGCCTCCATATTCGACA
GAGGGCAGACA
Found at i:13895232 original size:18 final size:18
Alignment explanation
Indices: 13895184--13895314 Score: 194
Period size: 18 Copynumber: 7.3 Consensus size: 18
13895174 ATAATCTTCA
13895184 ATGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGAT
*
13895203 GTGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGAT
13895222 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
13895240 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
13895257 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
13895275 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
13895292 GTGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
13895310 ATGAT
1 ATGAT
13895315 AAACAATCTT
Statistics
Matches: 102, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
17 31 0.30
18 49 0.48
19 22 0.22
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (18 bp):
ATGATTGCAATCTTAGAT
Found at i:13895257 original size:35 final size:35
Alignment explanation
Indices: 13895184--13895325 Score: 221
Period size: 35 Copynumber: 3.9 Consensus size: 35
13895174 ATAATCTTCA
*
13895184 ATGATATGCAATCTTAGATGTGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGATA--CAATCTTAGAT
13895222 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
13895257 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
*
13895292 GTGATTGCAATCTTAGATATGATAAACAATCTTA
1 ATGATTGCAATCTTAGATATGAT--ACAATCTTA
13895326 AAAGATATGA
Statistics
Matches: 100, Mismatches: 2, Indels: 5
0.93 0.02 0.05
Matches are distributed among these distances:
35 68 0.68
37 27 0.27
38 5 0.05
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:13897154 original size:20 final size:20
Alignment explanation
Indices: 13897124--13897168 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
13897114 CTGTTTTATT
13897124 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
13897143 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
13897163 ATGGGC
1 ATGGGC
13897169 AAGACCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:13899542 original size:20 final size:22
Alignment explanation
Indices: 13899513--13899552 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
13899503 ATTGATTTAT
*
13899513 GGAAATTATA-AT-TATTATTA
1 GGAAAATATATATATATTATTA
13899533 GGAAAATATATATATATTAT
1 GGAAAATATATATATATTAT
13899553 CGTATTTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 2 0.12
22 6 0.35
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.42
Consensus pattern (22 bp):
GGAAAATATATATATATTATTA
Found at i:13901397 original size:20 final size:20
Alignment explanation
Indices: 13901367--13901411 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
13901357 CTGTTTTATT
13901367 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
13901386 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
13901406 ATGGGC
1 ATGGGC
13901412 AAGACCTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:13901574 original size:62 final size:61
Alignment explanation
Indices: 13901435--13901576 Score: 155
Period size: 61 Copynumber: 2.3 Consensus size: 61
13901425 TCTCGACTTG
* * * * * *
13901435 TAATAGGGCTACGGCCCGGACTGATACTGATATGGGCTAGGCCCAGTATGCTCTGATATTG
1 TAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGAAATTC
* *
13901496 TAATAGGGCTATGGCCCAGATTAATACTGATATGGGCTAAGGCCCAGT-TAACACT-AAATTC
1 TAATAGGGCTACGGCCCAGACTAATACTGATATGGGCT-AGGCCCAGTAT-ACACTGAAATTC
13901557 TGAATAGGGCTTA-GGCCCAG
1 T-AATAGGGC-TACGGCCCAG
13901577 TAAAGCTTGA
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
61 40 0.58
62 27 0.39
63 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (61 bp):
TAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGAAATTC
Found at i:13902406 original size:18 final size:18
Alignment explanation
Indices: 13902383--13902421 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
13902373 TCAATGTGAC
13902383 ACGCCGGATTCGGTCGTA
1 ACGCCGGATTCGGTCGTA
13902401 ACGCCGGATTCGGTCGTA
1 ACGCCGGATTCGGTCGTA
13902419 ACG
1 ACG
13902422 TCTGAGCCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.18, C:0.28, G:0.33, T:0.21
Consensus pattern (18 bp):
ACGCCGGATTCGGTCGTA
Found at i:13905138 original size:40 final size:39
Alignment explanation
Indices: 13905001--13905185 Score: 167
Period size: 40 Copynumber: 4.6 Consensus size: 39
13904991 TTGAATGCTG
* * * * *
13905001 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
13905041 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGC--GAGTTACTAA-A
*
13905083 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
13905123 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
13905162 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
13905186 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
39 34 0.28
40 47 0.39
41 13 0.11
42 26 0.22
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:13905167 original size:39 final size:40
Alignment explanation
Indices: 13905084--13905185 Score: 152
Period size: 39 Copynumber: 2.6 Consensus size: 40
13905074 GATACAAGTT
* *
13905084 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAA
*
13905124 CCGGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACTAAAA
1 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAA
* *
13905163 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGTTAAGTCCCGAAGGCATT
13905186 TGAACGAGGA
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
39 34 0.60
40 23 0.40
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAA
Found at i:13907846 original size:19 final size:19
Alignment explanation
Indices: 13907822--13907860 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
13907812 GAATGCAAAT
13907822 CAGAGTGGGAGACCGGGTG
1 CAGAGTGGGAGACCGGGTG
13907841 CAGAGTGGGAGACCGGGTG
1 CAGAGTGGGAGACCGGGTG
13907860 C
1 C
13907861 TACTGCTCGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.18, G:0.51, T:0.10
Consensus pattern (19 bp):
CAGAGTGGGAGACCGGGTG
Found at i:13913025 original size:40 final size:40
Alignment explanation
Indices: 13912901--13913085 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
13912891 TTGAATGCTG
* * *
13912901 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
13912941 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
* * *
13912981 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
13913021 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
13913060 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
13913086 AACGAGGAGC
Statistics
Matches: 121, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
39 35 0.29
40 76 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:13929220 original size:27 final size:27
Alignment explanation
Indices: 13929190--13929330 Score: 164
Period size: 27 Copynumber: 5.2 Consensus size: 27
13929180 GTAACGAAGT
13929190 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
13929217 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
* ** *
13929244 CACTAGAT-CAGATAATCATGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
13929271 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
* *
13929298 CACTAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
13929325 CACCAG
1 CACCAG
13929331 GAAGCTTCCT
Statistics
Matches: 96, Mismatches: 11, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
26 10 0.10
27 82 0.85
28 4 0.04
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:13929275 original size:54 final size:54
Alignment explanation
Indices: 13929208--13929330 Score: 219
Period size: 54 Copynumber: 2.3 Consensus size: 54
13929198 ACAGATATTG
*
13929208 TGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACTAGATCAGATAATCA
1 TGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACTAGATCAGATAATCA
**
13929262 TGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACTAGATCAGATAATTG
1 TGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACTAGATCAGATAATCA
13929316 TGGCATAGCCACCAG
1 TGGCATAGCCACCAG
13929331 GAAGCTTCCT
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 66 1.00
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
TGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACTAGATCAGATAATCA
Found at i:13930990 original size:26 final size:26
Alignment explanation
Indices: 13930958--13931058 Score: 175
Period size: 26 Copynumber: 3.9 Consensus size: 26
13930948 CCCATTATGA
*
13930958 AACATTTACCTAAACCATTATCATGG
1 AACATTTACCTAACCCATTATCATGG
13930984 AACATTTACCTAACCCATTATCATGG
1 AACATTTACCTAACCCATTATCATGG
* *
13931010 AATATTTACCTAATCCATTATCATGG
1 AACATTTACCTAACCCATTATCATGG
13931036 AACATTTACCTAACCCATTATCA
1 AACATTTACCTAACCCATTATCA
13931059 ATTTGCACCA
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 70 1.00
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
AACATTTACCTAACCCATTATCATGG
Found at i:13945088 original size:119 final size:119
Alignment explanation
Indices: 13944510--13945085 Score: 938
Period size: 119 Copynumber: 4.8 Consensus size: 119
13944500 TAGGCCGCAG
* *
13944510 TATAGTAGATCTAGCTTTTAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
1 TATAGCAGATCTAGCTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
13944575 TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAA
66 TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAA
*
13944629 TATAGCAGATCTAGCTTTCAGATGTTTATATTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
1 TATAGCAGATCTAGCTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
*
13944694 TTTACAAGAAACAAATCGAGGACATAGCAGAGTTGACTCTCAGATGTTCTCAAA
66 TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAA
13944748 TATAGCAGATCTAGCTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
1 TATAGCAGATCTAGCTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
* *
13944813 TTTACAAGAAACAAATCGAGGACATAACAGAGTTGACTCTCAGATGTTCTCAAA
66 TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAA
* *
13944867 TATAGCAGATCTAGCTTTTAGATGTTTATACTGAAGCAGATCCAAGATCATTTGGTATTCTTGTG
1 TATAGCAGATCTAGCTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
* *
13944932 TTTACAAGAAACAAATCGAGGACATAGTAGATTTGGCTCTCAGATGTTCTCAAA
66 TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAA
* * * * * *
13944986 TATAACAGATCTCA-CATTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTAGTATCCTTGT
1 TATAGCAGATCT-AGCTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGT
** * * * *
13945050 ACTTACAAGGAACAAATCGAAGATATAGCTGATTTG
65 GTTTACAAGAAACAAATCGAGGACATAGCAGATTTG
13945086 GCTTTCACGT
Statistics
Matches: 429, Mismatches: 27, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
119 428 1.00
120 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.32
Consensus pattern (119 bp):
TATAGCAGATCTAGCTTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTG
TTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAA
Found at i:13945410 original size:201 final size:201
Alignment explanation
Indices: 13945028--13945414 Score: 553
Period size: 201 Copynumber: 1.9 Consensus size: 201
13945018 GAAGCAGATC
* *
13945028 CAAGATGGTTTAGTATCCTTGTACTTACAAGGAACAAATCGAAGATATAGCTGATTTGGCTTTCA
1 CAAGATGGTTTAGCATCCTTGTACTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCA
* * * **
13945093 CGTGTTTACGTTGAAGCAAATCTAAGATGATTTGTTGTCTCTGTATTGTCAGAGAACAAATCGAA
66 CGAGTTTACGATAAAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAA
** * * ** * *
13945158 GTTTGGCATCTTCATTTTGATGGAAGGCAGACACACAGCAGATCTCACCTTCAGATGTTCTCAAA
131 GTCAGGCATCTCCACTTCAAGGGAAGGCAGACACACAGCAGATCACACCTTCAGATGTTCTCAAA
13945223 CAGACT
196 CAGACT
* *
13945229 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCA
1 CAAGATGGTTTAGCATCCTTGTACTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCA
*
13945294 CGAGTTTACGATAAAGTAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAA
66 CGAGTTTACGATAAAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAA
* * *
13945359 GTCAGGCATCTCCACTTCAACGGGGA-GCAGATACATAGCA-AGTCACACCTTCAGAT
131 GTCAGGCATCTCCACTTCAA-GGGAAGGCAGACACACAGCAGA-TCACACCTTCAGAT
13945415 AATTTCACTG
Statistics
Matches: 163, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
200 1 0.01
201 159 0.98
202 3 0.02
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (201 bp):
CAAGATGGTTTAGCATCCTTGTACTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCA
CGAGTTTACGATAAAGCAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAA
GTCAGGCATCTCCACTTCAAGGGAAGGCAGACACACAGCAGATCACACCTTCAGATGTTCTCAAA
CAGACT
Found at i:13947071 original size:10 final size:10
Alignment explanation
Indices: 13947043--13947082 Score: 55
Period size: 10 Copynumber: 4.1 Consensus size: 10
13947033 AATTTAGTCC
13947043 TATATTTTTA
1 TATATTTTTA
13947053 T-TATTTTTA
1 TATATTTTTA
*
13947062 TATATATTTA
1 TATATTTTTA
*
13947072 TATATTGTTA
1 TATATTTTTA
13947082 T
1 T
13947083 TTGTTTTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
9 9 0.35
10 17 0.65
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (10 bp):
TATATTTTTA
Found at i:13947342 original size:18 final size:20
Alignment explanation
Indices: 13947319--13947365 Score: 55
Period size: 18 Copynumber: 2.5 Consensus size: 20
13947309 TTATATAACA
13947319 TTTATTATGAT-TTA-TTTT
1 TTTATTATGATATTACTTTT
*
13947337 TTTATTCT-ATATTACTTTT
1 TTTATTATGATATTACTTTT
13947356 TTTATATATG
1 TTTAT-TATG
13947366 TTATGTATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
17 2 0.09
18 10 0.43
19 9 0.39
20 2 0.09
ACGTcount: A:0.23, C:0.04, G:0.04, T:0.68
Consensus pattern (20 bp):
TTTATTATGATATTACTTTT
Found at i:13949822 original size:31 final size:31
Alignment explanation
Indices: 13949787--13949850 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
13949777 ACCTCCCCAC
13949787 ATTTAAGATATACATTATCTTCAATGTACAA
1 ATTTAAGATATACATTATCTTCAATGTACAA
*
13949818 ATTTAAGATATACATTGTCTTCAATGTACAA
1 ATTTAAGATATACATTATCTTCAATGTACAA
13949849 AT
1 AT
13949851 AGACATAAGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.41, C:0.12, G:0.08, T:0.39
Consensus pattern (31 bp):
ATTTAAGATATACATTATCTTCAATGTACAA
Found at i:13950119 original size:19 final size:21
Alignment explanation
Indices: 13950097--13950140 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 21
13950087 AAATAAAAAT
*
13950097 AAAACAACTAAA-AAA-AAGA
1 AAAACAAATAAACAAAGAAGA
*
13950116 AAAAGAAATAAACAAAGAAGA
1 AAAACAAATAAACAAAGAAGA
13950137 AAAA
1 AAAA
13950141 ATGGTGCTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 10 0.48
20 3 0.14
21 8 0.38
ACGTcount: A:0.80, C:0.07, G:0.09, T:0.05
Consensus pattern (21 bp):
AAAACAAATAAACAAAGAAGA
Found at i:13951541 original size:23 final size:23
Alignment explanation
Indices: 13951512--13951556 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
13951502 AATTGAACAT
*
13951512 AAAATAAGCAA-AAAAACATAATA
1 AAAATAAG-AATAAAAAAATAATA
13951535 AAAATAAGAATAAAAAAATAAT
1 AAAATAAGAATAAAAAAATAAT
13951557 GAAAGTATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 2 0.10
23 18 0.90
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.16
Consensus pattern (23 bp):
AAAATAAGAATAAAAAAATAATA
Found at i:13951683 original size:13 final size:12
Alignment explanation
Indices: 13951667--13951731 Score: 71
Period size: 12 Copynumber: 5.2 Consensus size: 12
13951657 AAGACTAAGT
13951667 AATAATATAAGAA
1 AATAATA-AAGAA
13951680 AATAATAAATGAA
1 AATAATAAA-GAA
*
13951693 AATAATAATGAA
1 AATAATAAAGAA
13951705 AATAATAATA-AA
1 AATAATAA-AGAA
13951717 AATAACTAAA-AA
1 AATAA-TAAAGAA
13951729 AAT
1 AAT
13951732 CAGTATACGA
Statistics
Matches: 47, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
12 26 0.55
13 21 0.45
ACGTcount: A:0.71, C:0.02, G:0.05, T:0.23
Consensus pattern (12 bp):
AATAATAAAGAA
Found at i:13951685 original size:16 final size:14
Alignment explanation
Indices: 13951667--13951714 Score: 59
Period size: 13 Copynumber: 3.7 Consensus size: 14
13951657 AAGACTAAGT
*
13951667 AATAAT-ATAAGAA
1 AATAATAATATGAA
13951680 AATAATAA-ATGAA
1 AATAATAATATGAA
13951693 AATAAT-A-ATGAA
1 AATAATAATATGAA
13951705 AATAATAATA
1 AATAATAATA
13951715 AAAATAACTA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
12 12 0.39
13 17 0.55
14 2 0.06
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.25
Consensus pattern (14 bp):
AATAATAATATGAA
Found at i:13951704 original size:12 final size:12
Alignment explanation
Indices: 13951667--13951721 Score: 74
Period size: 12 Copynumber: 4.4 Consensus size: 12
13951657 AAGACTAAGT
*
13951667 AATAATATAAGAA
1 AATAATA-ATGAA
13951680 AATAATAAATGAA
1 AATAAT-AATGAA
13951693 AATAATAATGAA
1 AATAATAATGAA
*
13951705 AATAATAATAAA
1 AATAATAATGAA
13951717 AATAA
1 AATAA
13951722 CTAAAAAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
12 22 0.56
13 16 0.41
14 1 0.03
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (12 bp):
AATAATAATGAA
Found at i:13953666 original size:25 final size:25
Alignment explanation
Indices: 13953634--13953706 Score: 110
Period size: 25 Copynumber: 2.9 Consensus size: 25
13953624 AGAGTTACAT
*
13953634 ATTTATAGCTCATGAGAGCATACCA
1 ATTTATAGCTCGTGAGAGCATACCA
* *
13953659 ATTTATAGCTTGTGAGAGAATACCA
1 ATTTATAGCTCGTGAGAGCATACCA
*
13953684 ATTTGTAGCTCGTGAGAGCATAC
1 ATTTATAGCTCGTGAGAGCATAC
13953707 TGATCTTCAG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (25 bp):
ATTTATAGCTCGTGAGAGCATACCA
Found at i:13955459 original size:30 final size:30
Alignment explanation
Indices: 13955425--13955490 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
13955415 TAAAGGGGAC
*
13955425 ACGGTCTTGTTTAGGC-CTATGTTGGGCCAT
1 ACGGTCATGTTTAGGCTC-ATGTTGGGCCAT
* * *
13955455 ACGGTCATGTTTTGGCTCGTGTTGGGCTAT
1 ACGGTCATGTTTAGGCTCATGTTGGGCCAT
13955485 ACGGTC
1 ACGGTC
13955491 GTGTCCCATA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 30 0.97
31 1 0.03
ACGTcount: A:0.12, C:0.20, G:0.32, T:0.36
Consensus pattern (30 bp):
ACGGTCATGTTTAGGCTCATGTTGGGCCAT
Found at i:13960320 original size:46 final size:46
Alignment explanation
Indices: 13960243--13960386 Score: 167
Period size: 46 Copynumber: 3.3 Consensus size: 46
13960233 TGGAAAACTT
* * * *
13960243 GCACACTTAGTGC-CA-A-ATAAATAGCCAAAGCTGTTTCAATCTC
1 GCACACTAAGTGCACATATATATATAGCCAAAGCTATCTCAATCTC
13960286 GCACACTAAGTGCACATATATATATAGCCAAAGCTATCTCAATCTC
1 GCACACTAAGTGCACATATATATATAGCCAAAGCTATCTCAATCTC
* * * *
13960332 GCACACTAAGTGCA-A-ATATATAT--CCGAAGCTATCTCGATTTT
1 GCACACTAAGTGCACATATATATATAGCCAAAGCTATCTCAATCTC
13960374 GCACACTAAGTGC
1 GCACACTAAGTGC
13960387 CCAAAATTAG
Statistics
Matches: 90, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
42 28 0.31
43 12 0.13
44 10 0.11
45 2 0.02
46 38 0.42
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.26
Consensus pattern (46 bp):
GCACACTAAGTGCACATATATATATAGCCAAAGCTATCTCAATCTC
Found at i:13962241 original size:30 final size:30
Alignment explanation
Indices: 13962205--13962267 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
13962195 CTATTTCTAG
13962205 GATTGCATGCAACTCCACTCAATGATGCTA
1 GATTGCATGCAACTCCACTCAATGATGCTA
13962235 GATTGCATGCAACTCCACTCAATGATGCTA
1 GATTGCATGCAACTCCACTCAATGATGCTA
13962265 GAT
1 GAT
13962268 CTATTCTTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (30 bp):
GATTGCATGCAACTCCACTCAATGATGCTA
Found at i:13968140 original size:40 final size:39
Alignment explanation
Indices: 13968049--13968231 Score: 190
Period size: 40 Copynumber: 4.6 Consensus size: 39
13968039 TCCTCGTTCA
* * *
13968049 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* *
13968088 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* * *
13968127 GAATGCCTTCGGGACTTAACCCGGAACTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAGCCCGG-ATTTAGTAACTCGCAC
* * * *
13968167 AAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCAC
*
13968208 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
13968232 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
39 39 0.32
40 70 0.58
41 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
Found at i:13976020 original size:40 final size:39
Alignment explanation
Indices: 13975929--13976111 Score: 190
Period size: 40 Copynumber: 4.6 Consensus size: 39
13975919 TCCTCGTTCA
* * *
13975929 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* *
13975968 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* * *
13976007 GAATGCCTTCGGGACTTAACCCGGAACTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAGCCCGG-ATTTAGTAACTCGCAC
* * * *
13976047 AAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCAC
*
13976088 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
13976112 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
39 39 0.32
40 70 0.58
41 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
Found at i:13978890 original size:15 final size:15
Alignment explanation
Indices: 13978870--13978908 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
13978860 GCGTGTTTAA
13978870 ACCTTAGGATTGATG
1 ACCTTAGGATTGATG
13978885 ACCTTAGGATTGATG
1 ACCTTAGGATTGATG
*
13978900 ACCCTAGGA
1 ACCTTAGGA
13978909 AGTAATATAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (15 bp):
ACCTTAGGATTGATG
Found at i:13981484 original size:27 final size:26
Alignment explanation
Indices: 13981441--13981529 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 26
13981431 TTTAGTTTAC
* ** *
13981441 AAAATTACTGAAATACCTTCGACTTGT
1 AAAATTAC-CAAATACCCCCGACTTAT
*
13981468 AAAATTACCAAAGTACCCCCGATTTAT
1 AAAATTACCAAA-TACCCCCGACTTAT
* * *
13981495 AAAATTACCCAAATATCCTCGATTTAT
1 AAAATTA-CCAAATACCCCCGACTTAT
*
13981522 AGAATTAC
1 AAAATTAC
13981530 TATTTTACCC
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
26 4 0.08
27 43 0.83
28 5 0.10
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (26 bp):
AAAATTACCAAATACCCCCGACTTAT
Found at i:13981528 original size:54 final size:54
Alignment explanation
Indices: 13981436--13981747 Score: 142
Period size: 54 Copynumber: 5.8 Consensus size: 54
13981426 AATACTTTAG
** * * * *
13981436 TTTACAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCCCGA
1 TTTACAAAATTACCCAAATACCCTCGATTTATAGAATTACCAAAGTACCCCCGA
* * * *** *
13981490 TTTATAAAATTACCCAAATATCCTCGATTTATAGAATTACTATTTTACCCTCGA
1 TTTACAAAATTACCCAAATACCCTCGATTTATAGAATTACCAAAGTACCCCCGA
* **** **** *
13981544 TTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACCCAAATACCCTCGATTTATAGAATTACCAAAGTACCCCCGA
* * * ** * * **** *
13981598 TTTATAGAATTA-CTATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGA
1 TTTACAAAATTACCCA-AATACCCTCGATTTATAGAATTACCAAAGTACCCCCGA
* * ** * *** *
13981652 TTTATAGAATTA-CCATTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGA
1 TTTACAAAATTACCCA-AATACCCTCGATTTATAGAATTACCAAAGTACCCCCGA
* **** *
13981706 TTTACAGAATTACCGTTTTACCCTCAATTTATAGAATTACCA
1 TTTACAAAATTACCCAAATACCCTCGATTTATAGAATTACCA
13981748 TTTTACCCTC
Statistics
Matches: 219, Mismatches: 37, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
53 1 0.00
54 217 0.99
55 1 0.00
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.38
Consensus pattern (54 bp):
TTTACAAAATTACCCAAATACCCTCGATTTATAGAATTACCAAAGTACCCCCGA
Found at i:13981825 original size:27 final size:27
Alignment explanation
Indices: 13981511--13981817 Score: 452
Period size: 27 Copynumber: 11.4 Consensus size: 27
13981501 ACCCAAATAT
**
13981511 CCTCGATTTATAGAATTACTATTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
*
13981538 CCTCGATTTACAGAATTACCGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
13981565 CCTCGATTTATAGAATTACCGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
**
13981592 CCTCGATTTATAGAATTACTATTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* *
13981619 CCTCGATTTACAGAATTATCGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
*
13981646 CCTCGATTTATAGAATTACCATTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
**
13981673 CCTCGATTTATAGAATTACTATTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
*
13981700 CCTCGATTTACAGAATTACCGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* *
13981727 CCTCAATTTATAGAATTACCATTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
*
13981754 CCTCGATTTATAGAATTACCGTTTAAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* * * *
13981781 CCTCGATTTAAAAAATTACTGTTTTAT
1 CCTCGATTTATAGAATTACCGTTTTAC
13981808 CCTCGATTTA
1 CCTCGATTTA
13981818 CAAAATTATT
Statistics
Matches: 252, Mismatches: 28, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 252 1.00
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (27 bp):
CCTCGATTTATAGAATTACCGTTTTAC
Found at i:13981837 original size:81 final size:81
Alignment explanation
Indices: 13981511--13981817 Score: 524
Period size: 81 Copynumber: 3.8 Consensus size: 81
13981501 ACCCAAATAT
13981511 CCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAT
1 CCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAT
*
13981576 AGAATTACCGTTTTAC
66 AGAATTACCATTTTAC
*
13981592 CCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTAT
1 CCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAT
13981657 AGAATTACCATTTTAC
66 AGAATTACCATTTTAC
*
13981673 CCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTAT
1 CCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAT
13981738 AGAATTACCATTTTAC
66 AGAATTACCATTTTAC
** * * * * *
13981754 CCTCGATTTATAGAATTACCGTTTAACCCTCGATTTAAAAAATTACTGTTTTATCCTCGATTTA
1 CCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTA
13981818 CAAAATTATT
Statistics
Matches: 214, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
81 214 1.00
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (81 bp):
CCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAT
AGAATTACCATTTTAC
Found at i:13981901 original size:27 final size:27
Alignment explanation
Indices: 13981846--13981974 Score: 152
Period size: 27 Copynumber: 4.8 Consensus size: 27
13981836 CTTAGTTTAC
* **
13981846 AAAATTACCAAAATA-CCATCGATCAGT
1 AAAATTACCAAAATACCCCT-GATTTGT
*
13981873 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* *
13981900 AAAATTACTAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * *
13981927 AAAATTACTAAAATACCCTTGACTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
*
13981954 AAAATTACCGAAATACCCCTG
1 AAAATTACCAAAATACCCCTG
13981975 TAGGGTAGAA
Statistics
Matches: 88, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
27 85 0.97
28 3 0.03
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:13981904 original size:81 final size:81
Alignment explanation
Indices: 13981819--13981974 Score: 206
Period size: 81 Copynumber: 1.9 Consensus size: 81
13981809 CTCGATTTAC
* * *
13981819 AAAATTATTAAAATACCCTTAGTTTACAAAATTACCAAAATACCATCGA-TCAGTAAAATTACCA
1 AAAATTACTAAAATACCCCTAATTTACAAAATTACCAAAATACCATCGACT-AGTAAAATTACCA
13981883 AAATACCCCTGGTTTGT
65 AAATACCCCTGGTTTGT
** * * * * *
13981900 AAAATTACTAAAATACCCCTAATTTGTAAAATTACTAAAATACCCTTGACTTGTAAAATTACCGA
1 AAAATTACTAAAATACCCCTAATTTACAAAATTACCAAAATACCATCGACTAGTAAAATTACCAA
13981965 AATACCCCTG
66 AATACCCCTG
13981975 TAGGGTAGAA
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
81 63 0.98
82 1 0.02
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTAATTTACAAAATTACCAAAATACCATCGACTAGTAAAATTACCAA
AATACCCCTGGTTTGT
Found at i:13981986 original size:27 final size:27
Alignment explanation
Indices: 13981956--13982267 Score: 428
Period size: 27 Copynumber: 11.6 Consensus size: 27
13981946 TGACTTGTAA
13981956 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
13981983 AATTACTGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
13982010 CATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
13982037 AATTACC-AGAATACCCCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
13982064 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
13982091 AATTATCGCAATATCCCTGTAGGATAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
13982118 AATTACCGGAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
13982145 AATTACTGAAATGCCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
13982172 AATTACTGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
13982199 AAATACTGAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
*
13982226 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
13982253 AATTACCGAGATACC
1 AATTACCGAAATACC
13982268 TTGTGAGGTA
Statistics
Matches: 251, Mismatches: 32, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
26 1 0.00
27 249 0.99
28 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:13981987 original size:81 final size:81
Alignment explanation
Indices: 13981819--13982000 Score: 197
Period size: 81 Copynumber: 2.2 Consensus size: 81
13981809 CTCGATTTAC
* * *
13981819 AAAATTATTAAAATACCCTTAGTTTACAAAATTACCAAAATACCATCGATCAGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTAATTTACAAAATTACCAAAATACCATCGATCAGTAAAATTACCAA
**
13981884 AATACCCCTGGTTTGT
66 AATACCCCTGGTGGGT
** * * * * *
13981900 AAAATTACTAAAATACCCCTAATTTGTAAAATTACTAAAATACCCTTGA-CTTGTAAAATTACCG
1 AAAATTACTAAAATACCCCTAATTTACAAAATTACCAAAATACCATCGATC-AGTAAAATTACCA
13981964 AAATACCCCT-GTAGGGT
65 AAATACCCCTGGT-GGGT
* **
13981981 AGAATTACTGGAATACCCCT
1 AAAATTACTAAAATACCCCT
13982001 GTAGGGTAGC
Statistics
Matches: 84, Mismatches: 15, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
80 3 0.04
81 81 0.96
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.29
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTAATTTACAAAATTACCAAAATACCATCGATCAGTAAAATTACCAA
AATACCCCTGGTGGGT
Found at i:13982015 original size:81 final size:81
Alignment explanation
Indices: 13981871--13982285 Score: 422
Period size: 81 Copynumber: 5.1 Consensus size: 81
13981861 CCATCGATCA
* ** * * * ** *
13981871 GTAAAATTACCAAAATACCCCTGGT-TTGTAAAATTACTAAAATACCCCT-AATTTGTAAAATTA
1 GTAAAATTACCGAAATACCCCT-GTAGGGTAGAATTACTGAAATACCCCTGTA-GGGTAGAATTA
* *
13981934 CTAAAATACCCTTGACT-T
64 CTGAAATACCCTTGA-TAG
* * *
13981952 GTAAAATTACCGAAATACCCCTGTAGGGTAGAATTACTGGAATACCCCTGTAGGGTAGCATTACC
1 GTAAAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACT
*
13982017 GAAATACCCCTG-TAGG
66 GAAATACCCTTGATA-G
* *
13982033 GTAGAATTACC-AGAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTA-
1 GTAAAATTACCGA-AATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTAC
*
13982096 TCGCAATATCCC-TG-TAG
65 T-GAAATA-CCCTTGATAG
* * *
13982113 GATAAAATTACCGGAATACCCCTATAGGGTAGAATTACTGAAATGCCCCTGTAGGGTAGAATTAC
1 G-TAAAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTAC
13982178 TGAAATACCCTT-ATAGG
65 TGAAATACCCTTGATA-G
* *
13982195 GTAGAAA-TACTGAAATACCCCTGTAGGGTAAAATTACTGAAATACCCCTGTAGGGTAGAATTAC
1 GTA-AAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTAC
* *
13982259 CGAGATA-CCTTG-TGAG
65 TGAAATACCCTTGAT-AG
13982275 GTAAAATTACC
1 GTAAAATTACC
13982286 ATTTTGCCCC
Statistics
Matches: 282, Mismatches: 35, Indels: 35
0.80 0.10 0.10
Matches are distributed among these distances:
79 4 0.01
80 20 0.07
81 248 0.88
82 10 0.04
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (81 bp):
GTAAAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACT
GAAATACCCTTGATAG
Found at i:13982718 original size:6 final size:6
Alignment explanation
Indices: 13982687--13982774 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
13982677 TTGCATTCAC
* *
13982687 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
13982736 -TCACCTA ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
13982775 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 54 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:13982725 original size:31 final size:31
Alignment explanation
Indices: 13982687--13982765 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
13982677 TTGCATTCAC
* * *
13982687 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
*
13982718 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
13982749 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
13982766 AGTTCTGATA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTG
Found at i:13984776 original size:27 final size:26
Alignment explanation
Indices: 13984733--13984821 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 26
13984723 TTTAGTTTAC
* ** *
13984733 AAAATTACTGAAATACCTTCGACTTGT
1 AAAATTAC-CAAATACCCCCGACTTAT
*
13984760 AAAATTACCAAAGTACCCCCGATTTAT
1 AAAATTACCAAA-TACCCCCGACTTAT
* * *
13984787 AAAATTACCCAAATATCCTCGATTTAT
1 AAAATTA-CCAAATACCCCCGACTTAT
*
13984814 AGAATTAC
1 AAAATTAC
13984822 TATTTTACCA
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
26 4 0.08
27 43 0.83
28 5 0.10
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (26 bp):
AAAATTACCAAATACCCCCGACTTAT
Found at i:13984835 original size:27 final size:27
Alignment explanation
Indices: 13984803--13985109 Score: 434
Period size: 27 Copynumber: 11.4 Consensus size: 27
13984793 ACCCAAATAT
*
13984803 CCTCGATTTATAGAATTACTATTTTAC
1 CCTCGATTTATAGAATTACCATTTTAC
* * *
13984830 CATCGATTTACAGAATTACCGTTTTAC
1 CCTCGATTTATAGAATTACCATTTTAC
*
13984857 CCTCGATTTATAGAATTACCGTTTTAC
1 CCTCGATTTATAGAATTACCATTTTAC
* *
13984884 CCACGATTTACAGAATTACCATTTTAC
1 CCTCGATTTATAGAATTACCATTTTAC
13984911 CCTCGATTTATAGAATTACCATTTTAC
1 CCTCGATTTATAGAATTACCATTTTAC
*
13984938 CCTCGATTTATAGAATTACTATTTTAC
1 CCTCGATTTATAGAATTACCATTTTAC
* *
13984965 CCTCGATTTACAGAATTACTATTTTAC
1 CCTCGATTTATAGAATTACCATTTTAC
* *
13984992 CCTCGATTTACAGAATTACCGTTTTAC
1 CCTCGATTTATAGAATTACCATTTTAC
13985019 CCTCGATTTATAGAATTACCATTTTAC
1 CCTCGATTTATAGAATTACCATTTTAC
* *
13985046 CCTCGATTTATAGAATTACCGTTTAAC
1 CCTCGATTTATAGAATTACCATTTTAC
* * *** *
13985073 CCTCGATTTACAAAATTATTGTTTTAT
1 CCTCGATTTATAGAATTACCATTTTAC
13985100 CCTCGATTTA
1 CCTCGATTTA
13985110 CAAAATTTTT
Statistics
Matches: 255, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 255 1.00
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
CCTCGATTTATAGAATTACCATTTTAC
Found at i:13985150 original size:27 final size:26
Alignment explanation
Indices: 13985119--13985267 Score: 127
Period size: 27 Copynumber: 5.5 Consensus size: 26
13985109 ACAAAATTTT
*
13985119 TAAAATACCCTTAGTTTACAAAATTAC
1 TAAAATACCCTT-GTTTATAAAATTAC
* * * *
13985146 CAAAATACCCTCGATCAGTAAAATTAC
1 TAAAATACCCTTGTTTA-TAAAATTAC
* * *
13985173 CAAAATACCCCTGGTTTGTAAAATTAC
1 TAAAATA-CCCTTGTTTATAAAATTAC
*
13985200 TAAAATACCCTTGATTTGTAAAATTAC
1 TAAAATACCCTTG-TTTATAAAATTAC
* * *
13985227 TAAAATACCCCTGACTTGTAAAATTAC
1 TAAAATACCCTTG-TTTATAAAATTAC
**
13985254 CGAAATACCCTTGT
1 TAAAATACCCTTGT
13985268 AAGGTAGAAT
Statistics
Matches: 102, Mismatches: 17, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
26 8 0.08
27 88 0.86
28 6 0.06
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (26 bp):
TAAAATACCCTTGTTTATAAAATTAC
Found at i:13985158 original size:54 final size:54
Alignment explanation
Indices: 13985100--13985264 Score: 156
Period size: 54 Copynumber: 3.1 Consensus size: 54
13985090 ATTGTTTTAT
* ** *
13985100 CCTCGATTTACAAAATTTTTAAAATACCCTTAGTTTACAAAATTACCAAAATAC
1 CCTCGATTTATAAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAATAC
* * * ** *
13985154 CCTCGA-TCAGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATAC
1 CCTCGATTTA-TAAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAATAC
* * * *
13985208 CCTTGATTTGTAAAATTACTAAAATACCCCTGACTTGT--AAAATTACCGAAATAC
1 CCTCGATTTATAAAATTACTAAAATACCCCT-AGTT-TACAAAATTACCAAAATAC
13985262 CCT
1 CCT
13985265 TGTAAGGTAG
Statistics
Matches: 89, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
53 2 0.02
54 83 0.93
55 3 0.03
56 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.07, T:0.31
Consensus pattern (54 bp):
CCTCGATTTATAAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAATAC
Found at i:13985265 original size:54 final size:54
Alignment explanation
Indices: 13985138--13985293 Score: 188
Period size: 54 Copynumber: 2.9 Consensus size: 54
13985128 CTTAGTTTAC
* **
13985138 AAAATTACCAAAATACCCTCGATCAGTAAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCTTGATCAGTAAAATTACCAAAATACCCCTGACTTGT
* ** *
13985192 AAAATTACTAAAATACCCTTGATTTGTAAAATTACTAAAATACCCCTGACTTGT
1 AAAATTACCAAAATACCCTTGATCAGTAAAATTACCAAAATACCCCTGACTTGT
* * * * *
13985246 AAAATTACCGAAATACCCTTG-TAAGGTAGAATTATCGAAATACCCCTG
1 AAAATTACCAAAATACCCTTGATCA-GTAAAATTACCAAAATACCCCTG
13985294 TAGGGTAGAA
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
53 1 0.01
54 85 0.99
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.28
Consensus pattern (54 bp):
AAAATTACCAAAATACCCTTGATCAGTAAAATTACCAAAATACCCCTGACTTGT
Found at i:13985279 original size:81 final size:79
Alignment explanation
Indices: 13985119--13985361 Score: 199
Period size: 81 Copynumber: 3.0 Consensus size: 79
13985109 ACAAAATTTT
** *
13985119 TAAAATACCCTT-AGTTTACAAAATTACCAAAATA-CCCTCGATCAGTAAAATTACCAAAATACC
1 TAAAATACCCTTGA-TTTGTAAAATTACCAAAATACCCCT-GAT-AGTAAAATTACCGAAATA-C
* ** *
13985182 CCTGGT-TTGTAAAATTA
62 CCTTGTAAGGTAGAATTA
* *
13985199 CTAAAATACCCTTGATTTGTAAAATTACTAAAATACCCCTGACTTGTAAAATTACCGAAATACCC
1 -TAAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTGA-TAGTAAAATTACCGAAATACCC
13985264 TTGTAAGGTAGAATTA
64 TTGTAAGGTAGAATTA
* * ** * * *
13985280 TCGAAATACCCCTG-TAGGGTAGAATTACCAGAATACCCCTG-TAGGGTAGAATTACCGAAATAC
1 T-AAAATACCCTTGAT-TTGTAAAATTACCAAAATACCCCTGATA--GTAAAATTACCGAAATAC
* *
13985343 CCCTGTAGGGTAGAATTA
62 CCTTGTAAGGTAGAATTA
13985361 T
1 T
13985362 CGCAATATCC
Statistics
Matches: 134, Mismatches: 20, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
79 1 0.01
80 8 0.06
81 119 0.89
82 6 0.04
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.28
Consensus pattern (79 bp):
TAAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTGATAGTAAAATTACCGAAATACCCTT
GTAAGGTAGAATTA
Found at i:13985540 original size:27 final size:27
Alignment explanation
Indices: 13985248--13985532 Score: 410
Period size: 27 Copynumber: 10.6 Consensus size: 27
13985238 TGACTTGTAA
* *
13985248 AATTACCGAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
13985275 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
13985302 AATTACC-AGAATACCCCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
13985329 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
13985356 AATTATCGCAATATCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
13985383 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
13985410 AATTACTGAAATGCCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
13985437 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
13985464 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
13985491 AATTACTGAAATACCCCTGGAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
13985518 AATTACCGAGATACC
1 AATTACCGAAATACC
13985533 TTGTGAGGTA
Statistics
Matches: 231, Mismatches: 25, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
26 1 0.00
27 229 0.99
28 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:13985983 original size:6 final size:6
Alignment explanation
Indices: 13985952--13986039 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
13985942 TTGCATTCAC
* *
13985952 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
13986001 -TCACCTA ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
13986040 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 54 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:13985990 original size:31 final size:31
Alignment explanation
Indices: 13985952--13986030 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
13985942 TTGCATTCAC
* * *
13985952 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
*
13985983 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
13986014 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
13986031 AGTTCTGATA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTG
Found at i:13988035 original size:27 final size:26
Alignment explanation
Indices: 13987992--13988080 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 26
13987982 TTTAGTTTAC
* ** *
13987992 AAAATTACTGAAATACCTTCGACTTGT
1 AAAATTAC-CAAATACCCCCGACTTAT
*
13988019 AAAATTACCAAAGTACCCCCGATTTAT
1 AAAATTACCAAA-TACCCCCGACTTAT
* * *
13988046 AAAATTACCCAAATATCCTCGATTTAT
1 AAAATTA-CCAAATACCCCCGACTTAT
*
13988073 AGAATTAC
1 AAAATTAC
13988081 TATTTTACCC
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
26 4 0.08
27 43 0.83
28 5 0.10
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (26 bp):
AAAATTACCAAATACCCCCGACTTAT
Found at i:13988092 original size:27 final size:27
Alignment explanation
Indices: 13988062--13988368 Score: 461
Period size: 27 Copynumber: 11.4 Consensus size: 27
13988052 ACCCAAATAT
*
13988062 CCTCGATTTATAGAATTACTATTTTAC
1 CCTCGATTTATAGAATTACCATTTTAC
* *
13988089 CCTCGATTTACAGAATTACCGTTTTAC
1 CCTCGATTTATAGAATTACCATTTTAC
*
13988116 CCTCGATTTATAGAATTACCGTTTTAC
1 CCTCGATTTATAGAATTACCATTTTAC
*
13988143 CCTCGATTTACAGAATTACCATTTTAC
1 CCTCGATTTATAGAATTACCATTTTAC
13988170 CCTCGATTTATAGAATTACCATTTTAC
1 CCTCGATTTATAGAATTACCATTTTAC
*
13988197 CCTCGATTTATAGAATTACTATTTTAC
1 CCTCGATTTATAGAATTACCATTTTAC
* *
13988224 CCTCGATTTACAGAATTACTATTTTAC
1 CCTCGATTTATAGAATTACCATTTTAC
* *
13988251 CCTCGATTTACAGAATTACCGTTTTAC
1 CCTCGATTTATAGAATTACCATTTTAC
13988278 CCTCGATTTATAGAATTACCATTTTAC
1 CCTCGATTTATAGAATTACCATTTTAC
* *
13988305 CCTCGATTTATAGAATTACCGTTTAAC
1 CCTCGATTTATAGAATTACCATTTTAC
* * * *
13988332 CCTCGATTTACAAAATTACTATTTTAT
1 CCTCGATTTATAGAATTACCATTTTAC
*
13988359 CCTCAATTTA
1 CCTCGATTTA
13988369 CAAAATTATT
Statistics
Matches: 258, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 258 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.40
Consensus pattern (27 bp):
CCTCGATTTATAGAATTACCATTTTAC
Found at i:13988427 original size:27 final size:27
Alignment explanation
Indices: 13988397--13988525 Score: 145
Period size: 27 Copynumber: 4.8 Consensus size: 27
13988387 CTTAGTTTAC
*
13988397 AAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCCCT-GATCTGT
* *
13988424 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATCTGT
* ** *
13988451 AAAATTACTAAAATACCATTGATTTGT
1 AAAATTACCAAAATACCCCTGATCTGT
*
13988478 AAAATTACTAAAATACCCCTGA-CTTGT
1 AAAATTACCAAAATACCCCTGATC-TGT
*
13988505 AAAATTACCGAAATACCCCTG
1 AAAATTACCAAAATACCCCTG
13988526 TAGGGTAGAA
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
27 84 0.95
28 4 0.05
ACGTcount: A:0.42, C:0.22, G:0.09, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATCTGT
Found at i:13988455 original size:81 final size:81
Alignment explanation
Indices: 13988370--13988525 Score: 201
Period size: 81 Copynumber: 1.9 Consensus size: 81
13988360 CTCAATTTAC
* *
13988370 AAAATTATTAAAATACCCTT-AGTTTACAAAATTACCAAAATA-CCCTCGA-TCAGTAAAATTAC
1 AAAATTACTAAAATACCATTGA-TTTACAAAATTACCAAAATACCCCT-GACT-AGTAAAATTAC
13988432 CAAAATACCCCTGGTTTGT
63 CAAAATACCCCTGGTTTGT
** * * *
13988451 AAAATTACTAAAATACCATTGATTTGTAAAATTACTAAAATACCCCTGACTTGTAAAATTACCGA
1 AAAATTACTAAAATACCATTGATTTACAAAATTACCAAAATACCCCTGACTAGTAAAATTACCAA
13988516 AATACCCCTG
66 AATACCCCTG
13988526 TAGGGTAGAA
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
81 59 0.91
82 6 0.09
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (81 bp):
AAAATTACTAAAATACCATTGATTTACAAAATTACCAAAATACCCCTGACTAGTAAAATTACCAA
AATACCCCTGGTTTGT
Found at i:13988498 original size:54 final size:54
Alignment explanation
Indices: 13988370--13988521 Score: 178
Period size: 54 Copynumber: 2.8 Consensus size: 54
13988360 CTCAATTTAC
* * * ** *
13988370 AAAATTATTAAAATACCCTTAGTTTACAAAATTACCAAAATACCCTCGATCAGT
1 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCATCGATCAGT
* * * **
13988424 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCATTGATTTGT
1 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCATCGATCAGT
** *
13988478 AAAATTACTAAAATACCCCTGACTTGTAAAATTACCGAAATACC
1 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACC
13988522 CCTGTAGGGT
Statistics
Matches: 82, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 82 1.00
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (54 bp):
AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCATCGATCAGT
Found at i:13988537 original size:27 final size:27
Alignment explanation
Indices: 13988507--13988818 Score: 507
Period size: 27 Copynumber: 11.6 Consensus size: 27
13988497 TGACTTGTAA
13988507 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
13988534 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
13988561 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
13988588 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
13988615 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
13988642 AATTATCGCAATATCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
13988669 AATTATCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
13988696 AATTACTGAAATGCCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
13988723 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
13988750 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
13988777 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
13988804 AATTACCGAGATACC
1 AATTACCGAAATACC
13988819 TTGTGAGGTA
Statistics
Matches: 265, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 265 1.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:13988538 original size:81 final size:80
Alignment explanation
Indices: 13988397--13988810 Score: 374
Period size: 81 Copynumber: 5.1 Consensus size: 80
13988387 CTTAGTTTAC
* ** *
13988397 AAAATTACCAAAATA-CCCTCGATCAGTAAAATTACCAAAATACCCCTGGT-TTGTAAAATTACT
1 AAAATTACCAAAATACCCCT-GAT-AGTAAAATTACCGAAATACCCCT-GTAGGGTAGAATTACT
* * **
13988460 AAAATACCATTG-ATTTGT
63 GAAATACCACTGTA-GGGT
* *
13988478 AAAATTACTAAAATACCCCTGACTTGTAAAATTACCGAAATACCCCTGTAGGGTAGAATTA-TCG
1 AAAATTACCAAAATACCCCTGA-TAGTAAAATTACCGAAATACCCCTGTAGGGTAGAATTACT-G
*
13988542 AAATACCCCTGTAGGGT
64 AAATACCACTGTAGGGT
* * * *
13988559 AGAATTACCGAAATACCCCTG-TAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCG
1 AAAATTACCAAAATACCCCTGATA--GTAAAATTACCGAAATACCCCTGTAGGGTAGAATTACTG
*
13988623 AAATACCCCTGTAGGGT
64 AAATACCACTGTAGGGT
* * ** * * * *
13988640 AGAATTATCGCAATATCCCTG-TAGGATAGAATTATCGGAATACCCCTGTAGGGTAGAATTACTG
1 AAAATTACCAAAATACCCCTGATA-G-TAAAATTACCGAAATACCCCTGTAGGGTAGAATTACTG
* *
13988704 AAATGCCCCTGTAGGGT
64 AAATACCACTGTAGGGT
* * * * *
13988721 AGAATTACCGAAATACCCTTG-TAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACTG
1 AAAATTACCAAAATACCCCTGATA--GTAAAATTACCGAAATACCCCTGTAGGGTAGAATTACTG
*
13988785 AAATACCCCTGTAGGGT
64 AAATACCACTGTAGGGT
*
13988802 AGAATTACC
1 AAAATTACC
13988811 GAGATACCTT
Statistics
Matches: 291, Mismatches: 32, Indels: 20
0.85 0.09 0.06
Matches are distributed among these distances:
79 1 0.00
80 5 0.02
81 277 0.95
82 8 0.03
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (80 bp):
AAAATTACCAAAATACCCCTGATAGTAAAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAA
ATACCACTGTAGGGT
Found at i:13989276 original size:31 final size:31
Alignment explanation
Indices: 13989238--13989316 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
13989228 TTGCATTCAC
* * *
13989238 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
* *
13989269 ATTCTGATTCTAATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
13989300 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
13989317 AGTTCTGATA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTG
Found at i:13989277 original size:6 final size:6
Alignment explanation
Indices: 13989238--13989325 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
13989228 TTGCATTCAC
* * *
13989238 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
13989287 -TCACCTA ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
13989326 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 52 0.81
7 6 0.09
8 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:13990149 original size:22 final size:22
Alignment explanation
Indices: 13990097--13990230 Score: 130
Period size: 22 Copynumber: 6.0 Consensus size: 22
13990087 TGAGCTGATG
* * *
13990097 AACAATAAGCTCTATTGAACTGA
1 AACAGTAAGCTCTATCGAGCT-A
*
13990120 AACGGTAAGCTCTATCGAGCTA
1 AACAGTAAGCTCTATCGAGCTA
13990142 AACAGTAAGCTCTATCGAGCTA
1 AACAGTAAGCTCTATCGAGCTA
* *
13990164 AACAGTAAGCTC-ATACGACCTG
1 AACAGTAAGCTCTAT-CGAGCTA
*
13990186 AACAGTAAGCTCCAAT-GAGCTGAA
1 AACAGTAAGCT-CTATCGAGCT--A
13990210 AACAGTAAGCTCT-TACGAGCT
1 AACAGTAAGCTCTAT-CGAGCT
13990231 GATATATCTG
Statistics
Matches: 94, Mismatches: 10, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
21 2 0.02
22 55 0.59
23 19 0.20
24 18 0.19
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (22 bp):
AACAGTAAGCTCTATCGAGCTA
Found at i:13990190 original size:44 final size:43
Alignment explanation
Indices: 13990095--13990232 Score: 152
Period size: 44 Copynumber: 3.1 Consensus size: 43
13990085 CCTGAGCTGA
* * *
13990095 TGAACAATAAGCTCTATTGAACTGAAACGGTAAGCTCTATCGAGC
1 TGAACAGTAAGCTCTA-TGAGCTGAAACAGTAAGCTCTA-CGAGC
* *
13990140 TAAACAGTAAGCTCTATCGAGCT-AAACAGTAAGCTCATACGACC
1 TGAACAGTAAGCTCTAT-GAGCTGAAACAGTAAGCTC-TACGAGC
*
13990184 TGAACAGTAAGCTCCAATGAGCTGAAAACAGTAAGCTCTTACGAGC
1 TGAACAGTAAGCT-CTATGAGCTG-AAACAGTAAGCTC-TACGAGC
13990230 TGA
1 TGA
13990233 TATATCTGTA
Statistics
Matches: 79, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
44 34 0.43
45 23 0.29
46 22 0.28
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.22
Consensus pattern (43 bp):
TGAACAGTAAGCTCTATGAGCTGAAACAGTAAGCTCTACGAGC
Found at i:13991823 original size:20 final size:20
Alignment explanation
Indices: 13991777--13991826 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
13991767 TTTATTTTAT
13991777 TTTTATATTTTTAATTATTAA
1 TTTT-TATTTTTAATTATTAA
** *
13991798 GATTTATTTTTAGTTATTAA
1 TTTTTATTTTTAATTATTAA
13991818 TTTTTATTT
1 TTTTTATTT
13991827 CTTTGTCTCT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
20 22 0.92
21 2 0.08
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.68
Consensus pattern (20 bp):
TTTTTATTTTTAATTATTAA
Found at i:13995659 original size:18 final size:18
Alignment explanation
Indices: 13995638--13995688 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
13995628 TGAGGGCAGG
*
13995638 AATGAAGATGATGATGAT
1 AATGAAGATGATGATGAC
* *
13995656 AATGAAGACGACGATGAC
1 AATGAAGATGATGATGAC
* *
13995674 AAGGGAGATGATGAT
1 AATGAAGATGATGAT
13995689 AAGGATAAGC
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.43, C:0.06, G:0.31, T:0.20
Consensus pattern (18 bp):
AATGAAGATGATGATGAC
Found at i:13997534 original size:23 final size:22
Alignment explanation
Indices: 13997496--13997540 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
13997486 CATCTTTGCA
* *
13997496 TTTTTATTTTTGTTTTCTTTTG
1 TTTTTATTTTTCTTTTCGTTTG
13997518 TTTTTATTTTTCCTTTTCGTTTG
1 TTTTTATTTTT-CTTTTCGTTTG
13997541 CTTGATGACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.04, C:0.09, G:0.09, T:0.78
Consensus pattern (22 bp):
TTTTTATTTTTCTTTTCGTTTG
Found at i:13998466 original size:30 final size:30
Alignment explanation
Indices: 13998432--13998506 Score: 105
Period size: 30 Copynumber: 2.5 Consensus size: 30
13998422 GCCTAGGGGT
13998432 AAAATGGTCATTTTGTAAAAGTCTAGAGGC
1 AAAATGGTCATTTTGTAAAAGTCTAGAGGC
* * * * *
13998462 AAAATGATTATTTTGTGAAAGTCTAGGGGT
1 AAAATGGTCATTTTGTAAAAGTCTAGAGGC
13998492 AAAATGGTCATTTTG
1 AAAATGGTCATTTTG
13998507 CCCAATTATG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.35, C:0.07, G:0.24, T:0.35
Consensus pattern (30 bp):
AAAATGGTCATTTTGTAAAAGTCTAGAGGC
Found at i:13998977 original size:46 final size:46
Alignment explanation
Indices: 13998831--13999092 Score: 212
Period size: 46 Copynumber: 5.6 Consensus size: 46
13998821 TTATTTGTGT
* * *
13998831 GCTAGTGTAAGACATGTCTGAGACATGCATCGGCCAC-ATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGA
* * * * * *
13998877 GCCAGTGTAAGACCAAGTCTAGGACATGGCATCGGCATTGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAGA
* * *
13998925 GATAGTGCAAGACATGTCTGGGATATGCATCGGCCTCGAGATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AGA
*
13998971 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGTG-
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGAGA
* * * *
13999016 TC-AGTGTAAGACCATGTCTGGGACATGGCATCGACAC-AGATATGTGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTCGAGA--TGAGA
* *
13999065 GCTAGTGTAAGGCCATGTCTAGGACATG
1 GCTAGTGTAA-GACATGTCTGGGACATG
13999093 ACGTCAGCCT
Statistics
Matches: 171, Mismatches: 30, Indels: 27
0.75 0.13 0.12
Matches are distributed among these distances:
44 9 0.05
45 17 0.10
46 72 0.42
47 23 0.13
48 26 0.15
49 3 0.02
50 20 0.12
51 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGA
Found at i:14007036 original size:21 final size:18
Alignment explanation
Indices: 14007012--14007055 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 18
14007002 GCCAACCTGG
14007012 TTTAGGGTTTTAGTTAATAGT
1 TTTAGGGTTTTA-TT--TAGT
14007033 TTTAGGGTTTTATTTAGT
1 TTTAGGGTTTTATTTAGT
14007051 TTTAG
1 TTTAG
14007056 TTTATTTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 9 0.39
20 2 0.09
21 12 0.52
ACGTcount: A:0.20, C:0.00, G:0.23, T:0.57
Consensus pattern (18 bp):
TTTAGGGTTTTATTTAGT
Found at i:14012478 original size:7 final size:6
Alignment explanation
Indices: 14012437--14012477 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
14012427 ATAATTTAAT
*
14012437 AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
14012478 ACATATAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 26 0.84
8 5 0.16
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:14012478 original size:20 final size:20
Alignment explanation
Indices: 14012440--14012479 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
14012430 ATTTAATAAA
**
14012440 TAAAAATAAAAATCTAAAAC
1 TAAAAATAAAAATAAAAAAC
14012460 TAAAAATAAAAATAAAAAAC
1 TAAAAATAAAAATAAAAAAC
14012480 ATATAATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.17
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAAAC
Found at i:14012512 original size:9 final size:9
Alignment explanation
Indices: 14012498--14012573 Score: 100
Period size: 9 Copynumber: 8.4 Consensus size: 9
14012488 TTATACAAAC
*
14012498 AATTCAGTT
1 AATTCGGTT
*
14012507 AATTCAGTT
1 AATTCGGTT
*
14012516 AATTCGGGT
1 AATTCGGTT
14012525 AATTCGAG-T
1 AATTCG-GTT
*
14012534 AATTCGGGT
1 AATTCGGTT
14012543 AATTCGGTT
1 AATTCGGTT
14012552 AATTCGGTT
1 AATTCGGTT
14012561 AATTCGGTT
1 AATTCGGTT
14012570 AATT
1 AATT
14012574 TTATACTTAT
Statistics
Matches: 62, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
8 1 0.02
9 60 0.97
10 1 0.02
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.41
Consensus pattern (9 bp):
AATTCGGTT
Found at i:14014319 original size:17 final size:17
Alignment explanation
Indices: 14014297--14014339 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
14014287 ATAATTGCAA
*
14014297 TTTTTTTTGT-TTTTACT
1 TTTTTTTTCTATTTT-CT
14014314 TTTTTTTTCTATTTTCT
1 TTTTTTTTCTATTTTCT
14014331 TGTTTTTTT
1 T-TTTTTTT
14014340 TTCACTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 12 0.52
18 11 0.48
ACGTcount: A:0.05, C:0.07, G:0.05, T:0.84
Consensus pattern (17 bp):
TTTTTTTTCTATTTTCT
Found at i:14014341 original size:22 final size:22
Alignment explanation
Indices: 14014313--14014356 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
14014303 TTGTTTTTAC
14014313 TTTTTTTTT--CTATTTTCTTG
1 TTTTTTTTTCACTATTTTCTTG
*
14014333 TTTTTTTTTCACTATTTTGTTG
1 TTTTTTTTTCACTATTTTCTTG
14014355 TT
1 TT
14014357 ATTGTATAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 9 0.43
22 12 0.57
ACGTcount: A:0.07, C:0.09, G:0.07, T:0.77
Consensus pattern (22 bp):
TTTTTTTTTCACTATTTTCTTG
Found at i:14016929 original size:43 final size:43
Alignment explanation
Indices: 14016872--14016976 Score: 140
Period size: 43 Copynumber: 2.4 Consensus size: 43
14016862 TAACGAGATG
* *
14016872 TGATTATTTGTAAGACCATGTATGGGACATTGGCATCATTATGT
1 TGATTATGTATAAGACCATGTATGGGACATTGGCATCATTAT-T
* *
14016916 T-ATTATGTATAAGACCATGTTTGGGACATTGGCATCGTTATT
1 TGATTATGTATAAGACCATGTATGGGACATTGGCATCATTATT
* *
14016958 TGATTTTGTGTAAGACCAT
1 TGATTATGTATAAGACCAT
14016977 AGTTAGGCTA
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
42 2 0.04
43 51 0.94
44 1 0.02
ACGTcount: A:0.27, C:0.11, G:0.22, T:0.40
Consensus pattern (43 bp):
TGATTATGTATAAGACCATGTATGGGACATTGGCATCATTATT
Found at i:14021374 original size:48 final size:48
Alignment explanation
Indices: 14021239--14021362 Score: 123
Period size: 48 Copynumber: 2.6 Consensus size: 48
14021229 TATGTGTGCT
* * *
14021239 AGTGTAAGACATGTCTAGGACATGCATCG-GC-C-ACATTATG-AGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCTCGACA-TGTGCA-AGCC
* *
14021285 AGTGTAAGACATGTTTGGGACATGCATCGACCTCGAGATGTGCAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCTCGACATGTGCAAGCC
*
14021333 AGTGTAAGA-ACTGTCTGGGATATGACATCG
1 AGTGTAAGACA-TGTCTGGGACATG-CATCG
14021363 GCTTGACATG
Statistics
Matches: 65, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
46 27 0.42
47 2 0.03
48 28 0.43
49 8 0.12
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCTCGACATGTGCAAGCC
Found at i:14021433 original size:49 final size:47
Alignment explanation
Indices: 14021376--14021483 Score: 128
Period size: 49 Copynumber: 2.3 Consensus size: 47
14021366 TGACATGTGT
*
14021376 CAGTGTAAGACCTGTCAGGGAAATGGCATCAACATT-GATAGATGAGAGC
1 CAGTGTAAGACCTATCAGGGAAATGGCATCAAC-TTAGAT-G-TGAGAGC
* * ** *
14021425 CAGTGTAAGACCTATCTGGGACATGGCATTGACTTAGATGTGTGAGC
1 CAGTGTAAGACCTATCAGGGAAATGGCATCAACTTAGATGTGAGAGC
14021472 CAGTGTAAGACC
1 CAGTGTAAGACC
14021484 ATGTTTGGAA
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
47 18 0.35
48 3 0.06
49 31 0.60
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.23
Consensus pattern (47 bp):
CAGTGTAAGACCTATCAGGGAAATGGCATCAACTTAGATGTGAGAGC
Found at i:14023213 original size:49 final size:47
Alignment explanation
Indices: 14022963--14023229 Score: 164
Period size: 49 Copynumber: 5.7 Consensus size: 47
14022953 GTTATTGTAG
* * *
14022963 GCTAGTGGAAGACATGTCTGGGACAT-GCATCGGCCAC-ATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATC-GCCTCGATGATGAGA
** * * *
14023009 GCCGGCGTAAGACCATGTCTGGGACATGCCATCAGCAT---TGA-GACGA
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATC-GCCTCGATGATGA-GA
* * * *
14023055 G--AGTGTAAGACATGTCTAGGACAT-GCATCGGCT--AT-AAGATGT
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGCCTCGATGATGA-GA
* * * * *
14023097 GTTAGTGTAAGACCATGTTTGGGACATGGCTTCGGCACGAAT-ATGTGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCGCCTCG-ATGA--TGAGA
*
14023147 GCTAGTGTAAGGACATGTCTGGGACATGGCATCAGCCTCGATGATGATA
1 GCTAGTGTAA-GACATGTCTGGGACATGGCATC-GCCTCGATGATGAGA
*
14023196 GCTAGTGTAAGACCATGTCTCGGACATGGCATCG
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCG
14023230 GCACCTTATC
Statistics
Matches: 173, Mismatches: 30, Indels: 34
0.73 0.13 0.14
Matches are distributed among these distances:
41 3 0.02
42 9 0.05
43 13 0.08
44 16 0.09
45 14 0.08
46 20 0.12
47 14 0.08
48 9 0.05
49 36 0.21
50 30 0.17
51 9 0.05
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCGCCTCGATGATGAGA
Found at i:14029004 original size:31 final size:32
Alignment explanation
Indices: 14028966--14029030 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
14028956 CTCGAAAACA
*
14028966 TAAAAACCATT-AAAAGGGACAAAATTACACT
1 TAAAAACCATTAAAAAGAGACAAAATTACACT
14028997 TAAAAACCATTAAAAAGAGACAAAATTACACT
1 TAAAAACCATTAAAAAGAGACAAAATTACACT
14029029 TA
1 TA
14029031 CATGCAAGCT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 11 0.34
32 21 0.66
ACGTcount: A:0.57, C:0.15, G:0.08, T:0.20
Consensus pattern (32 bp):
TAAAAACCATTAAAAAGAGACAAAATTACACT
Found at i:14036907 original size:27 final size:26
Alignment explanation
Indices: 14036870--14036983 Score: 104
Period size: 27 Copynumber: 4.2 Consensus size: 26
14036860 AGCATGGCTG
*
14036870 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
*
14036896 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* *
14036923 CCAGAATAGATATTTGTGGC-GTAGCCA
1 CCAGAACAGATA-TTGTGACAG-AGCCA
* * * *
14036950 CCAGAAATAGATGTTTGTGGCATAGCCA
1 CCAG-AACAGAT-ATTGTGACAGAGCCA
14036978 CCAGAA
1 CCAGAA
14036984 AGCTTCCTCC
Statistics
Matches: 77, Mismatches: 5, Indels: 11
0.83 0.05 0.12
Matches are distributed among these distances:
26 12 0.16
27 42 0.55
28 23 0.30
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.21
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:14036967 original size:28 final size:28
Alignment explanation
Indices: 14036894--14036984 Score: 116
Period size: 28 Copynumber: 3.3 Consensus size: 28
14036884 GTGACAGAGT
* *
14036894 CACCAGATACAGATA-TTGTGGCAG-AGC
1 CACCAGAAATAGATATTTGTGGC-GTAGC
14036921 CACCAG-AATAGATATTTGTGGCGTAGC
1 CACCAGAAATAGATATTTGTGGCGTAGC
* *
14036948 CACCAGAAATAGATGTTTGTGGCATAGC
1 CACCAGAAATAGATATTTGTGGCGTAGC
14036976 CACCAGAAA
1 CACCAGAAA
14036985 GCTTCCTCCA
Statistics
Matches: 57, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
26 7 0.12
27 22 0.39
28 28 0.49
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (28 bp):
CACCAGAAATAGATATTTGTGGCGTAGC
Found at i:14038695 original size:27 final size:28
Alignment explanation
Indices: 14038665--14038764 Score: 109
Period size: 27 Copynumber: 3.7 Consensus size: 28
14038655 TTTAGTTTAC
14038665 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
14038692 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
14038719 TAAAATTACTGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
14038746 TAAAATTACC-AAAGTACCC
1 TAAAATTACCGAAA-TACCC
14038765 CCGATTTACA
Statistics
Matches: 63, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
26 7 0.11
27 54 0.86
28 2 0.03
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:14038764 original size:54 final size:54
Alignment explanation
Indices: 14038665--14038771 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
14038655 TTTAGTTTAC
* * *
14038665 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* * *
14038719 TAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
14038772 ACAGAATTAC
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 8 0.18
54 37 0.82
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:14038779 original size:27 final size:27
Alignment explanation
Indices: 14038749--14038809 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
14038739 CGACTTGTAA
14038749 AATTACCAAAGTACCCCCGATTTACAG
1 AATTACCAAAGTACCCCCGATTTACAG
**** *
14038776 AATTACCGTTTTACCCCCGATTTACAT
1 AATTACCAAAGTACCCCCGATTTACAG
14038803 AATTACC
1 AATTACC
14038810 GTTTTACCCC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.33, C:0.30, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACCAAAGTACCCCCGATTTACAG
Found at i:14038972 original size:27 final size:27
Alignment explanation
Indices: 14038760--14038963 Score: 257
Period size: 27 Copynumber: 7.6 Consensus size: 27
14038750 ATTACCAAAG
*
14038760 TACCCCCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
14038787 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
14038814 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
* *
14038841 TACCCTCGACTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
14038868 TACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
14038895 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * **
14038922 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
14038949 TACCCTCGATTTACA
1 TACCCTCGATTTACA
14038964 ATATTACTAA
Statistics
Matches: 160, Mismatches: 15, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
26 1 0.01
27 158 0.99
28 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:14038979 original size:27 final size:27
Alignment explanation
Indices: 14038841--14039088 Score: 95
Period size: 27 Copynumber: 9.2 Consensus size: 27
14038831 ATTATCGTTT
* ****
14038841 TACCCTCGACTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * ****
14038868 TACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * * ***
14038895 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * * * ***
14038922 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* *
14038949 TACCCTCGATTTACAATATTACTAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* * **
14038976 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* * *** * *
14039003 TACCCTTGGTTTGTGAAATTATCGAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* **
14039030 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* *
14039057 TACCC-CTAATTTACAAAGTTA-CAAAA
1 TACCCTC-GATTTACAAAATTACCAAAA
14039083 TACCCT
1 TACCCT
14039089 TGACTTTTTA
Statistics
Matches: 186, Mismatches: 33, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
26 11 0.06
27 175 0.94
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.36
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCAAAA
Found at i:14038980 original size:54 final size:54
Alignment explanation
Indices: 14038749--14038999 Score: 171
Period size: 54 Copynumber: 4.6 Consensus size: 54
14038739 CGACTTGTAA
* * ** * * * *
14038749 AATTACCAAAGTACCCCCGATTTACAGAATTACCGTTTTACCCCCGATTTACAT
1 AATTACTAAAATACCCTTGATTTATAGAATTACCATTTTACCCTCGATTTACAG
***** * * * * * * *
14038803 AATTACCGTTTTACCCCTGATTTACATAATTATCGTTTTACCCTCGACTTACAA
1 AATTACTAAAATACCCTTGATTTATAGAATTACCATTTTACCCTCGATTTACAG
***** * * *
14038857 AATTACCGTTTTACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTATAG
1 AATTACTAAAATACCCTTGATTTATAGAATTACCATTTTACCCTCGATTTACAG
*** *
14038911 AATTACTATTTTACCCTTGATTTATAGAATTACTATTTTACCCTCGATTTACA-
1 AATTACTAAAATACCCTTGATTTATAGAATTACCATTTTACCCTCGATTTACAG
* * *
14038964 ATATTACTAAAATACCCTTGGTTTGTAAAATTACCA
1 A-ATTACTAAAATACCCTTGATTTATAGAATTACCA
14039000 AAATACCCTT
Statistics
Matches: 167, Mismatches: 29, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
53 1 0.01
54 166 0.99
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.38
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGATTTATAGAATTACCATTTTACCCTCGATTTACAG
Found at i:14039007 original size:54 final size:53
Alignment explanation
Indices: 14038895--14039171 Score: 157
Period size: 54 Copynumber: 5.1 Consensus size: 53
14038885 ATTACCGTTT
* *** * * * * ***
14038895 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACA-AATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
14038949 TACCCTCGATTTACAATATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAA-ATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
* * ** * ***
14039003 TACCCTTGGTTTGTGAAATTA-TCGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTT-ACAAATTACT-AAAATACCCTTGGTTTGTAAAATTACCAAAA
* * * *
14039057 TACCC-CTAATTTACAAAGTTAC-AAAATACCCTTGACTTTTTAAAAATTA-TAGAAA
1 TACCCTC-GATTTACAAA-TTACTAAAATACCCTTG-GTTTGT-AAAATTACCA-AAA
* * * * * * *
14039112 TACCATTGGTTTACAAAATTACTGAAATACCTTTGGTTTGTAGATTTACCAAAA
1 TACCCTCGATTTAC-AAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
*
14039166 CACCCT
1 TACCCT
14039172 TGTAGGATGA
Statistics
Matches: 167, Mismatches: 43, Indels: 26
0.71 0.18 0.11
Matches are distributed among these distances:
53 14 0.08
54 110 0.66
55 30 0.18
56 13 0.08
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (53 bp):
TACCCTCGATTTACAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
Found at i:14039132 original size:27 final size:26
Alignment explanation
Indices: 14039095--14039150 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 26
14039085 CCCTTGACTT
14039095 TTTAAAAATTA-TAGAAATACCATTGG
1 TTTAAAAATTACT-GAAATACCATTGG
*
14039121 TTTACAAAATTACTGAAATACCTTTGG
1 TTTA-AAAATTACTGAAATACCATTGG
14039148 TTT
1 TTT
14039151 GTAGATTTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 4 0.15
27 22 0.81
28 1 0.04
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (26 bp):
TTTAAAAATTACTGAAATACCATTGG
Found at i:14039234 original size:27 final size:27
Alignment explanation
Indices: 14039191--14039268 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 27
14039181 AAATGACTAA
*
14039191 AATACCCCTATTA-GGTAAAGTGA-TCGT
1 AATACCCCT-GTAGGGTAAAGTGACT-GT
14039218 AA-AGCCCCTGTAGGGTAAAGTGACTGT
1 AATA-CCCCTGTAGGGTAAAGTGACTGT
* *
14039245 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTAGGGTAAAGTGAC
14039269 GAATATGCCC
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
26 3 0.07
27 39 0.89
28 2 0.05
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAGTGACTGT
Found at i:14040455 original size:25 final size:25
Alignment explanation
Indices: 14040426--14040473 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
14040416 TTATAACATG
* * *
14040426 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
14040451 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
14040474 GTTTGTGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:14040540 original size:20 final size:20
Alignment explanation
Indices: 14040517--14040555 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
14040507 TAAACATGGT
14040517 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
14040537 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
14040556 TGTAATCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:14040662 original size:24 final size:23
Alignment explanation
Indices: 14040606--14040772 Score: 219
Period size: 24 Copynumber: 7.0 Consensus size: 23
14040596 GAGGAAGTGA
*
14040606 AAAAGGGCTTATGCCCCAATTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
14040629 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
14040652 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
14040676 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
* *
14040700 TAAAGGGCTTATGCCCCAATTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
14040723 AAAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
14040748 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
14040772 A
1 A
14040773 TGATAAAGCA
Statistics
Matches: 129, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
23 42 0.33
24 76 0.59
25 11 0.09
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:14040705 original size:47 final size:46
Alignment explanation
Indices: 14040607--14040750 Score: 225
Period size: 47 Copynumber: 3.1 Consensus size: 46
14040597 AGGAAGTGAA
* *
14040607 AAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAATTATAAAAGGGCTTATGCCCCAGTTAT-T
*
14040654 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAATTAT-AAAAGGGCTTATGCCCCAGTTATT
*
14040701 AAAGGGCTTATGCCCCAATTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAATTAT-AAAAGGGCTTATGCCCCAGTTATT
14040748 AAA
1 AAA
14040751 AGAGGCTAGG
Statistics
Matches: 90, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
47 68 0.76
48 22 0.24
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAATTATAAAAGGGCTTATGCCCCAGTTATT
Found at i:14040728 original size:71 final size:71
Alignment explanation
Indices: 14040606--14040771 Score: 253
Period size: 71 Copynumber: 2.3 Consensus size: 71
14040596 GAGGAAGTGA
* * *
14040606 AAAAGGGCTTATGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAATTATAAAAAGGGCTTATGCCCCA
14040671 GTTATC
66 GTTATC
*
14040677 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAATTATAAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAATTATAAAAAGGGCTTATGCCCCA
*
14040742 GTTATT
66 GTTATC
*
14040748 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
14040772 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
71 76 0.87
72 11 0.13
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.27
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAATTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:14041001 original size:31 final size:31
Alignment explanation
Indices: 14040965--14041028 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
14040955 CATTTACAGT
* * *
14040965 AAAGGCTTCGGCCTAGTAATATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAAAATGA
**
14040996 AAAGGCTTCGACCCAGTGTTATGAAAAATGA
1 AAAGGCTTCGACCCAGTAATATGAAAAATGA
14041027 AA
1 AA
14041029 TATGAAAAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTAATATGAAAAATGA
Found at i:14049117 original size:27 final size:26
Alignment explanation
Indices: 14049079--14049194 Score: 99
Period size: 27 Copynumber: 4.3 Consensus size: 26
14049069 CAGCATAGCT
*
14049079 ACCAGAACAGATATTGTGACAGAGTC
1 ACCAGAACAGATATTGTGACAGAGCC
*
14049105 ACCAGATACAGATATTGTGGCAGAGCC
1 ACCAGA-ACAGATATTGTGACAGAGCC
* * *
14049132 ACCAGAATAGAAATTTGTGGC-GTAGCC
1 ACCAGAACAGATA-TTGTGACAG-AGCC
* * * *
14049159 ACCAGAAATAGATGTTTGTGGCATAGCC
1 ACCAG-AACAGAT-ATTGTGACAGAGCC
14049187 ACCAGAAC
1 ACCAGAAC
14049195 GCTTCCTTCC
Statistics
Matches: 76, Mismatches: 8, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
26 12 0.16
27 42 0.55
28 22 0.29
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (26 bp):
ACCAGAACAGATATTGTGACAGAGCC
Found at i:14049177 original size:28 final size:28
Alignment explanation
Indices: 14049119--14049193 Score: 100
Period size: 28 Copynumber: 2.7 Consensus size: 28
14049109 GATACAGATA
14049119 TTGTGGCAG-AGCCACCAG-AATAGAAAT
1 TTGTGGC-GTAGCCACCAGAAATAGAAAT
**
14049146 TTGTGGCGTAGCCACCAGAAATAGATGT
1 TTGTGGCGTAGCCACCAGAAATAGAAAT
*
14049174 TTGTGGCATAGCCACCAGAA
1 TTGTGGCGTAGCCACCAGAA
14049194 CGCTTCCTTC
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
26 1 0.02
27 16 0.37
28 26 0.60
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.21
Consensus pattern (28 bp):
TTGTGGCGTAGCCACCAGAAATAGAAAT
Found at i:14049482 original size:20 final size:20
Alignment explanation
Indices: 14049457--14049494 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
14049447 ATTAGGCCCG
14049457 TTGGCCCATTAACCCCAATT
1 TTGGCCCATTAACCCCAATT
*
14049477 TTGGCCCATTAAGCCCAA
1 TTGGCCCATTAACCCCAA
14049495 ATATACCGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.34, G:0.13, T:0.26
Consensus pattern (20 bp):
TTGGCCCATTAACCCCAATT
Found at i:14065930 original size:45 final size:45
Alignment explanation
Indices: 14065880--14065970 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 45
14065870 TGGATTTGAG
*
14065880 TATGAAATACTGCATACAGGTAATATTTATGACACAACATCTGCA
1 TATGAAATACTGCATACACGTAATATTTATGACACAACATCTGCA
*
14065925 TATGAAATACTGCATACACGTAATATTTATGACACGACATCTGCA
1 TATGAAATACTGCATACACGTAATATTTATGACACAACATCTGCA
14065970 T
1 T
14065971 GGGGTTGGGT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (45 bp):
TATGAAATACTGCATACACGTAATATTTATGACACAACATCTGCA
Found at i:14069127 original size:43 final size:43
Alignment explanation
Indices: 14069040--14069132 Score: 109
Period size: 43 Copynumber: 2.2 Consensus size: 43
14069030 TAGCTCATAA
* * * * *
14069040 ATGCC-ATATCCCAGATATGGTCTTACATATTATCACATATCG
1 ATGCCAATAGCCCAGATATGGTCTTACAGATAATCAAATAACG
*
14069082 ATGCCAATAGCCCAGCTATGGTCTTACACGA-AATCAAATAACG
1 ATGCCAATAGCCCAGATATGGTCTTACA-GATAATCAAATAACG
14069125 ATGCCAAT
1 ATGCCAAT
14069133 TACACGTAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
42 5 0.12
43 37 0.86
44 1 0.02
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (43 bp):
ATGCCAATAGCCCAGATATGGTCTTACAGATAATCAAATAACG
Found at i:14069143 original size:27 final size:27
Alignment explanation
Indices: 14069105--14069159 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
14069095 AGCTATGGTC
14069105 TTACACGAAATCAAATAACGATGCCAA
1 TTACACGAAATCAAATAACGATGCCAA
* * *
14069132 TTACACGTAATCACATAATGATGCCAA
1 TTACACGAAATCAAATAACGATGCCAA
14069159 T
1 T
14069160 GTCCCAGACA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.44, C:0.22, G:0.11, T:0.24
Consensus pattern (27 bp):
TTACACGAAATCAAATAACGATGCCAA
Found at i:14074931 original size:18 final size:18
Alignment explanation
Indices: 14074908--14074945 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
14074898 ATTGTTACAG
*
14074908 ATGCAATTTTTTTTTTAA
1 ATGCAATTTTTTTATTAA
14074926 ATGCAATTTTTTTATTAA
1 ATGCAATTTTTTTATTAA
14074944 AT
1 AT
14074946 TTGTATCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (18 bp):
ATGCAATTTTTTTATTAA
Done.