Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 48 of 362
Found at i:14079105 original size:28 final size:28
Alignment explanation
Indices: 14079065--14079134 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
14079055 CCTTTAGGCT
*
14079065 CAATCTCATTCATATGGCCCATCAAGCC
1 CAATCACATTCATATGGCCCATCAAGCC
* *
14079093 CAATCACTTTCATATGGCCCGTCAAGCC
1 CAATCACATTCATATGGCCCATCAAGCC
14079121 CAATCACATTCATA
1 CAATCACATTCATA
14079135 GTCATGGAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.30, C:0.34, G:0.10, T:0.26
Consensus pattern (28 bp):
CAATCACATTCATATGGCCCATCAAGCC
Found at i:14079371 original size:16 final size:16
Alignment explanation
Indices: 14079350--14079381 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14079340 GCCAAACTTC
14079350 TAGCTTTTCGGCATTT
1 TAGCTTTTCGGCATTT
*
14079366 TAGCTTTTCGGTATTT
1 TAGCTTTTCGGCATTT
14079382 CGGGATTTGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.16, G:0.19, T:0.53
Consensus pattern (16 bp):
TAGCTTTTCGGCATTT
Found at i:14081842 original size:13 final size:13
Alignment explanation
Indices: 14081824--14081848 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14081814 TGAAGATGAC
14081824 ATAAAATAAGATG
1 ATAAAATAAGATG
14081837 ATAAAATAAGAT
1 ATAAAATAAGAT
14081849 TATATTTCTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (13 bp):
ATAAAATAAGATG
Found at i:14090048 original size:12 final size:13
Alignment explanation
Indices: 14090020--14090046 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14090010 ATAATAAAGG
14090020 TTAAGTTAAAATT
1 TTAAGTTAAAATT
14090033 TTAAGTTAAAATT
1 TTAAGTTAAAATT
14090046 T
1 T
14090047 AATAAAACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.48
Consensus pattern (13 bp):
TTAAGTTAAAATT
Found at i:14093104 original size:26 final size:27
Alignment explanation
Indices: 14093075--14093171 Score: 90
Period size: 27 Copynumber: 3.6 Consensus size: 27
14093065 TTAGTTTACC
*
14093075 AAATTACTGAAATACCCCCAG-TTGTA
1 AAATTACTCAAATACCCCCAGTTTGTA
* *
14093101 AAATTAC-CAAAGTACCCCCGGTTTATA
1 AAATTACTCAAA-TACCCCCAGTTTGTA
* * * *
14093128 AAATTACCCAAATATCCTCAGTTTGCA
1 AAATTACTCAAATACCCCCAGTTTGTA
* *
14093155 AAATTATTGAAATACCC
1 AAATTACTCAAATACCC
14093172 TCGACATGTA
Statistics
Matches: 56, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
25 3 0.05
26 15 0.27
27 34 0.61
28 4 0.07
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.28
Consensus pattern (27 bp):
AAATTACTCAAATACCCCCAGTTTGTA
Found at i:14093210 original size:27 final size:27
Alignment explanation
Indices: 14093154--14093211 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 27
14093144 CTCAGTTTGC
* *
14093154 AAAATTATTGAAATACCCTCGACATGT
1 AAAATTATTCAAATACCCTCGACATAT
14093181 AAAATTA-TCAAAGTACCCTCGA-ATTAT
1 AAAATTATTCAAA-TACCCTCGACA-TAT
14093208 AAAA
1 AAAA
14093212 ATTACTATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 5 0.19
27 22 0.81
ACGTcount: A:0.47, C:0.17, G:0.09, T:0.28
Consensus pattern (27 bp):
AAAATTATTCAAATACCCTCGACATAT
Found at i:14093249 original size:27 final size:27
Alignment explanation
Indices: 14093194--14093334 Score: 194
Period size: 27 Copynumber: 5.2 Consensus size: 27
14093184 ATTATCAAAG
*
14093194 TACCCTCGAATTATA-AAAATTACTATTT
1 TACCCTCG-ATT-TACAAAATTACTGTTT
*
14093222 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
14093249 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
14093276 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* **
14093303 TACCCTCAATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTT
14093330 TACCC
1 TACCC
14093335 CTAGGGTGTT
Statistics
Matches: 104, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
26 2 0.02
27 94 0.90
28 8 0.08
ACGTcount: A:0.31, C:0.24, G:0.06, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:14093285 original size:54 final size:54
Alignment explanation
Indices: 14093194--14093334 Score: 221
Period size: 54 Copynumber: 2.6 Consensus size: 54
14093184 ATTATCAAAG
*
14093194 TACCCTCGAATTATA-AAAATTACTATTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCG-ATT-TACAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
*
14093249 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
* *
14093303 TACCCTCAATTTACAAAATTACCATTTTACCC
1 TACCCTCGATTTACAAAATTACTATTTTACCC
14093335 CTAGGGTGTT
Statistics
Matches: 80, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
53 2 0.03
54 70 0.88
55 8 0.10
ACGTcount: A:0.31, C:0.24, G:0.06, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
Found at i:14093867 original size:6 final size:6
Alignment explanation
Indices: 14093836--14093912 Score: 77
Period size: 6 Copynumber: 12.5 Consensus size: 6
14093826 TTACATTCAC
* *
14093836 ATTCTG ATTTTG ATTCT- ATTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
14093885 -TCACCTG ATTCTG ATTCTG ATTCTG ATT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATT
14093913 ATAGTTCTGA
Statistics
Matches: 59, Mismatches: 6, Indels: 12
0.77 0.08 0.16
Matches are distributed among these distances:
5 4 0.07
6 47 0.80
7 5 0.08
8 3 0.05
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:14093872 original size:31 final size:31
Alignment explanation
Indices: 14093836--14093912 Score: 118
Period size: 31 Copynumber: 2.5 Consensus size: 31
14093826 TTACATTCAC
* *
14093836 ATTCTGATTTTGATTCTATTACCTGATACTG
1 ATTCTGATTCTGATTCTATCACCTGATACTG
* *
14093867 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTATCACCTGATACTG
14093898 ATTCTGATTCTGATT
1 ATTCTGATTCTGATT
14093913 ATAGTTCTGA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTATCACCTGATACTG
Found at i:14095942 original size:27 final size:27
Alignment explanation
Indices: 14095850--14096073 Score: 123
Period size: 27 Copynumber: 8.3 Consensus size: 27
14095840 TTAGTTTACC
* * *
14095850 AAATTACTGAAATACCC-CCAGTTATA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * *
14095876 AAATTAC-CAAAGTACCCCCGGTTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
** * *
14095903 AAATTACCCAAATATCTTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
14095930 AAATTACTGAAATACCCTC-AGTTTGCA
1 AAATTACTGAAATACCCTCGA-TTTGTA
* **
14095957 AAATTATTGAAATACCCTCGACATGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
14095984 AAATTA-TCAAAGTACCCTCGAATTATAA
1 AAATTACTGAAA-TACCCTCGATTTGT-A
*** **
14096012 AAATTACTGTTTTACCCTCGATTTACA
1 AAATTACTGAAATACCCTCGATTTGTA
* *** **
14096039 GAATTACTGTTTTACCCTCGATTTACA
1 AAATTACTGAAATACCCTCGATTTGTA
14096066 AAATTACT
1 AAATTACT
14096074 ATTTTACCCT
Statistics
Matches: 160, Mismatches: 30, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
25 3 0.02
26 17 0.11
27 115 0.72
28 24 0.15
29 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:14096078 original size:27 final size:27
Alignment explanation
Indices: 14095996--14096136 Score: 187
Period size: 27 Copynumber: 5.2 Consensus size: 27
14095986 ATTATCAAAG
14095996 TACCCTCGAATTATA-AAAATTACTGTTT
1 TACCCTCG-ATT-TACAAAATTACTGTTT
*
14096024 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
14096051 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
14096078 TACCCTCGATTTACAGAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-GTTT
* **
14096105 TACCCTCAATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTT
14096132 TACCC
1 TACCC
14096137 CTAGGGTGTT
Statistics
Matches: 101, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
26 3 0.03
27 90 0.89
28 8 0.08
ACGTcount: A:0.31, C:0.23, G:0.06, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:14096087 original size:54 final size:54
Alignment explanation
Indices: 14095996--14096136 Score: 214
Period size: 54 Copynumber: 2.6 Consensus size: 54
14095986 ATTATCAAAG
*
14095996 TACCCTCGAATTATA-AAAATTACTGTTTTACCCTCGATTTACAGAATTA-CTGTTT
1 TACCCTCG-ATT-TACAAAATTACTATTTTACCCTCGATTTACAGAATTATC-GTTT
14096051 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTATCGTTT
* *
14096105 TACCCTCAATTTACAAAATTACCATTTTACCC
1 TACCCTCGATTTACAAAATTACTATTTTACCC
14096137 CTAGGGTGTT
Statistics
Matches: 81, Mismatches: 3, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
53 2 0.02
54 70 0.86
55 9 0.11
ACGTcount: A:0.31, C:0.23, G:0.06, T:0.39
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTATCGTTT
Found at i:14096669 original size:6 final size:6
Alignment explanation
Indices: 14096638--14096714 Score: 77
Period size: 6 Copynumber: 12.5 Consensus size: 6
14096628 TTGTATTCAC
* *
14096638 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
14096687 -TCACCTG ATTCTG ATTCTG ATTCTG ATT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATT
14096715 ATAGTTCTGA
Statistics
Matches: 59, Mismatches: 6, Indels: 12
0.77 0.08 0.16
Matches are distributed among these distances:
5 3 0.05
6 48 0.81
7 6 0.10
8 2 0.03
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:14096673 original size:31 final size:31
Alignment explanation
Indices: 14096638--14096714 Score: 127
Period size: 31 Copynumber: 2.5 Consensus size: 31
14096628 TTGTATTCAC
* *
14096638 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
*
14096669 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
14096700 ATTCTGATTCTGATT
1 ATTCTGATTCTGATT
14096715 ATAGTTCTGA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:14099132 original size:38 final size:38
Alignment explanation
Indices: 14099090--14099251 Score: 150
Period size: 38 Copynumber: 4.2 Consensus size: 38
14099080 GGCTTAAAGA
14099090 CCCGCAGGCTAT-ATGCTGGAATTATATCCAGGTTAAAT
1 CCCGCAGGCT-TCATGCTGGAATTATATCCAGGTTAAAT
* *
14099128 CCCGCAGGCTTCGTGCTGGTAA-TATATCCGGGTTAAAT
1 CCCGCAGGCTTCATGCTGG-AATTATATCCAGGTTAAAT
* * * * *
14099166 CCAGCAGGCTTCGTGCTAGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTTCATGCTGGAATTATATCCAGGTTAAAT
* * * *
14099204 CCCGTAGGCTT-AGTGCTTGTATTATATCCGAGCTTAAAGT
1 CCCGCAGGCTTCA-TGCTGGAATTATATCC-AGGTTAAA-T
*
14099244 CCCACAGG
1 CCCGCAGG
14099252 TTTTGTGCTG
Statistics
Matches: 105, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
37 2 0.02
38 88 0.84
39 8 0.08
40 7 0.07
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (38 bp):
CCCGCAGGCTTCATGCTGGAATTATATCCAGGTTAAAT
Found at i:14112032 original size:50 final size:49
Alignment explanation
Indices: 14111914--14112043 Score: 188
Period size: 50 Copynumber: 2.6 Consensus size: 49
14111904 CCGGTACGCA
* * **
14111914 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATCTAATACACG
* *
14111963 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACAATCTAATACACG
*
14112013 TAGTATCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
14112044 TCACAGTTTT
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
49 31 0.42
50 42 0.58
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATCTAATACACG
Found at i:14117400 original size:50 final size:49
Alignment explanation
Indices: 14117282--14117411 Score: 190
Period size: 50 Copynumber: 2.6 Consensus size: 49
14117272 CTGGTACGCA
* * **
14117282 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
*
14117331 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTCTAATACACG
14117381 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
14117412 TTACAGTTTT
Statistics
Matches: 74, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
49 29 0.39
50 41 0.55
51 4 0.05
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
Found at i:14117465 original size:101 final size:99
Alignment explanation
Indices: 14117282--14117468 Score: 250
Period size: 101 Copynumber: 1.9 Consensus size: 99
14117272 CTGGTACGCA
* * *
14117282 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
*
14117347 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGCGACCTCACCATCTAATACACG
* ** *
14117381 TAGTAGCCTGCACTTAGTACTACACACGTGA-TTACAGTTTTCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCGGGTACACATAGTAGCCTGCAC
* *
14117445 TTAGTACTGCACATGCGACCTCAC
63 TTAGTACTACACACGCGACCTCAC
14117469 AATAGATCAT
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
98 4 0.05
99 29 0.39
101 42 0.56
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTCACCATCTAATACACG
Found at i:14123087 original size:38 final size:38
Alignment explanation
Indices: 14123026--14123183 Score: 196
Period size: 38 Copynumber: 4.1 Consensus size: 38
14123016 ATTTGATGTG
*
14123026 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCT-TCATGCTGGAATTA
*
14123066 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGG-AATTA
* *
14123104 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGAATTA
* *
14123142 TATCCGAGTTAAATCCCGCAGGCTT-AGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCA-TGCTGGAATTA
14123180 TATC
1 TATC
14123184 TGTGACAGCC
Statistics
Matches: 109, Mismatches: 5, Indels: 10
0.88 0.04 0.08
Matches are distributed among these distances:
37 2 0.02
38 92 0.84
39 7 0.06
40 8 0.07
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.30
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGAATTA
Found at i:14123126 original size:76 final size:78
Alignment explanation
Indices: 14123026--14123183 Score: 232
Period size: 76 Copynumber: 2.1 Consensus size: 78
14123016 ATTTGATGTG
*
14123026 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCT
1 TATCCGGGCTTAAAGACCCGCAGGCT-TCATGCTGGAATTATATCCGAGTTAAATCCCGCAGGCT
*
14123090 TCGTGCTGGTAATA
65 TAGTGCTGGTAATA
* * *
14123104 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTATTATATCCGAGTTAAATCCCGCAGGCTT
1 TATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAATTATATCCGAGTTAAATCCCGCAGGCTT
*
14123167 AGTGCTGGTATTA
66 AGTGCTGGTAATA
14123180 TATC
1 TATC
14123184 TGTGACAGCC
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
75 1 0.01
76 59 0.81
77 5 0.07
78 8 0.11
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.30
Consensus pattern (78 bp):
TATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAATTATATCCGAGTTAAATCCCGCAGGCTT
AGTGCTGGTAATA
Found at i:14125727 original size:47 final size:47
Alignment explanation
Indices: 14125520--14126048 Score: 851
Period size: 47 Copynumber: 11.1 Consensus size: 47
14125510 GAAATGATAG
14125520 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
14125569 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
14125618 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TATATATGTGA
* *
14125669 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
14125716 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
14125763 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
14125810 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
14125857 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
14125904 TAAGGCCTAATGGCCGAGGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
14125951 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
14125998 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
14126045 TAAG
1 TAAG
14126049 TCCCGAAGGG
Statistics
Matches: 454, Mismatches: 24, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
47 321 0.71
49 85 0.19
51 48 0.11
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:14126223 original size:37 final size:37
Alignment explanation
Indices: 14126167--14126245 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
14126157 CCGAGCTCTA
* * *
14126167 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
14126204 AAGACCTGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
14126241 AAGAC
1 AAGAC
14126246 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:14139358 original size:21 final size:21
Alignment explanation
Indices: 14139328--14139383 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
14139318 GTGAGATTTT
*
14139328 GATGTACATGATATGACATGA
1 GATGCACATGATATGACATGA
* **
14139349 TATGCACATGATATGTTATGA
1 GATGCACATGATATGACATGA
14139370 GATGCACATGATAT
1 GATGCACATGATAT
14139384 ACTCATTATA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (21 bp):
GATGCACATGATATGACATGA
Found at i:14139359 original size:11 final size:11
Alignment explanation
Indices: 14139333--14139397 Score: 62
Period size: 11 Copynumber: 6.1 Consensus size: 11
14139323 ATTTTGATGT
14139333 ACATGATATG-
1 ACATGATATGC
14139343 ACATGATATGC
1 ACATGATATGC
14139354 ACATGATATG-
1 ACATGATATGC
** *
14139364 TTATGAGATGC
1 ACATGATATGC
*
14139375 ACATGATATAC
1 ACATGATATGC
* *
14139386 TCATTATATGC
1 ACATGATATGC
14139397 A
1 A
14139398 TGGGTTGGGT
Statistics
Matches: 42, Mismatches: 11, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
10 17 0.40
11 25 0.60
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (11 bp):
ACATGATATGC
Found at i:14139395 original size:32 final size:31
Alignment explanation
Indices: 14139335--14139395 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
14139325 TTTGATGTAC
* *
14139335 ATGATATGACATGATATGCACATGATATGTT
1 ATGAGATGACATGATATACACATGATATGTT
* *
14139366 ATGAGATGCACATGATATACTCATTATATG
1 ATGAGATG-ACATGATATACACATGATATG
14139396 CATGGGTTGG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 7 0.28
32 18 0.72
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.34
Consensus pattern (31 bp):
ATGAGATGACATGATATACACATGATATGTT
Found at i:14141699 original size:29 final size:29
Alignment explanation
Indices: 14141654--14141723 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 29
14141644 GTGGTTGTTT
* * *
14141654 TATGTTATATATGAGCCCATGTGGCGGAA
1 TATGTTATATGTCAGCCCATGTGGCAGAA
** *
14141683 TATGTTATATGTCAGCCTTTGTGGTAGAA
1 TATGTTATATGTCAGCCCATGTGGCAGAA
*
14141712 TAGGTTATATGT
1 TATGTTATATGT
14141724 AGAAGCCTTT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.26, C:0.10, G:0.26, T:0.39
Consensus pattern (29 bp):
TATGTTATATGTCAGCCCATGTGGCAGAA
Found at i:14141734 original size:31 final size:29
Alignment explanation
Indices: 14141680--14141737 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 29
14141670 CCATGTGGCG
* *
14141680 GAATATGTTATATGTCAGCCTTTGTGGTA
1 GAATAGGTTATATGTAAGCCTTTGTGGTA
14141709 GAATAGGTTATATGTAGAAGCCTTTGTGG
1 GAATAGGTTATATGT--AAGCCTTTGTGG
14141738 ATGTTCTCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 14 0.56
31 11 0.44
ACGTcount: A:0.26, C:0.09, G:0.28, T:0.38
Consensus pattern (29 bp):
GAATAGGTTATATGTAAGCCTTTGTGGTA
Found at i:14141829 original size:55 final size:55
Alignment explanation
Indices: 14141756--14141879 Score: 178
Period size: 55 Copynumber: 2.3 Consensus size: 55
14141746 TGTTATATGG
* *
14141756 AGCCTTAGTGGTCGACTCTATGAATGCGCTTTCGTGGCAAAATATGTTAAGTGAA
1 AGCCTTTGTGGTTGACTCTATGAATGCGCTTTCGTGGCAAAATATGTTAAGTGAA
* ** * *
14141811 AGCCTTTGTGGTTGACTCTATGAATGCGCTTTTGTGGTGAAATATGTTAAGTTAG
1 AGCCTTTGTGGTTGACTCTATGAATGCGCTTTCGTGGCAAAATATGTTAAGTGAA
14141866 AGCCTTTGT-GTTGA
1 AGCCTTTGTGGTTGA
14141880 TTCTGTTAAA
Statistics
Matches: 62, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
54 5 0.08
55 57 0.92
ACGTcount: A:0.23, C:0.14, G:0.27, T:0.36
Consensus pattern (55 bp):
AGCCTTTGTGGTTGACTCTATGAATGCGCTTTCGTGGCAAAATATGTTAAGTGAA
Found at i:14147245 original size:133 final size:133
Alignment explanation
Indices: 14147007--14147312 Score: 524
Period size: 133 Copynumber: 2.3 Consensus size: 133
14146997 ATATATTTCT
** *
14147007 AAAAATATTTTTATTTTCCTCAATATTATTTACCTATTTAGTTAATATTGTAACTTCTCTCTATT
1 AAAAATATTTTTA-TTTCCGGAATATTATTTACCTATTTAGTTAATATTGTAACTTCTCTCCATT
14147072 TTAAATTATTTTTCAATAAAATATTTACTCTAAACAAAAAATATTTAAAACCATAAAATTGATTT
65 TTAAATTATTTTTCAATAAAATATTTACTCTAAACAAAAAATATTTAAAACCATAAAATTGATTT
14147137 CTCA
130 CTCA
14147141 AAAAATATTTTTATTTCCCGGAATATTATTTACCTATTTAGTTAATATTGTAA-TTCTCTCCATT
1 AAAAATATTTTTATTT-CCGGAATATTATTTACCTATTTAGTTAATATTGTAACTTCTCTCCATT
*
14147205 TTAAATTATTTTTCAATAAAATATTTACTCTAACCAAAAAATATTTAAAACCATAAAATTGATTT
65 TTAAATTATTTTTCAATAAAATATTTACTCTAAACAAAAAATATTTAAAACCATAAAATTGATTT
14147270 CTCA
130 CTCA
* *
14147274 AAAAATATTTTTATTTTCGGAAATATTATTTACCGATTT
1 AAAAATATTTTTATTTCCGG-AATATTATTTACCTATTT
14147313 TTAAATGAAA
Statistics
Matches: 164, Mismatches: 6, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
132 3 0.02
133 114 0.70
134 47 0.29
ACGTcount: A:0.39, C:0.12, G:0.04, T:0.45
Consensus pattern (133 bp):
AAAAATATTTTTATTTCCGGAATATTATTTACCTATTTAGTTAATATTGTAACTTCTCTCCATTT
TAAATTATTTTTCAATAAAATATTTACTCTAAACAAAAAATATTTAAAACCATAAAATTGATTTC
TCA
Found at i:14151418 original size:83 final size:83
Alignment explanation
Indices: 14151279--14151432 Score: 299
Period size: 83 Copynumber: 1.9 Consensus size: 83
14151269 ATACTTTGGA
14151279 AAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGAAGCTTCTATCAAAGATA
1 AAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGAAGCTTCTATCAAAGATA
14151344 AGCAGACCATGTTGAGTC
66 AGCAGACCATGTTGAGTC
*
14151362 AAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATA
1 AAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGAAGCTTCTATCAAAGATA
14151427 AGCAGA
66 AGCAGA
14151433 ATTTGGTGGT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 70 1.00
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (83 bp):
AAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGAAGCTTCTATCAAAGATA
AGCAGACCATGTTGAGTC
Found at i:14151794 original size:133 final size:132
Alignment explanation
Indices: 14151555--14151859 Score: 513
Period size: 133 Copynumber: 2.3 Consensus size: 132
14151545 TATATTTCTG
14151555 AAAATATTTTTATTTTCCGGAATATTATTTACCTATTTAGTTAATATTGTAACTTCTCTCCATTT
1 AAAATATTTTTA-TTTCCGGAATATTATTTACCTATTTAGTTAATATTGTAAC-TCTCTCCATTT
14151620 TAAATTATTTTTCAATAAAATATTTACTCTAAACAAAAAATATTTAAAACCATAAAATTGATTTC
64 TAAATTATTTTTCAATAAAATATTTACTCTAAACAAAAAATATTTAAAACCATAAAATTGATTTC
14151685 TCAA
129 TCAA
14151689 AAAATATTTTTTATTTCCCGGAATATTATTTACCTATTTAGTTAATATTGTAA-TCTCTCCATTT
1 AAAATA-TTTTTATTT-CCGGAATATTATTTACCTATTTAGTTAATATTGTAACTCTCTCCATTT
* * *
14151753 TAAATTATTTTTCAATAAAATATTTACTCTAACCCAAAAATATTTAAAACCATAAGATTGATTTC
64 TAAATTATTTTTCAATAAAATATTTACTCTAAACAAAAAATATTTAAAACCATAAAATTGATTTC
14151818 TCAA
129 TCAA
* *
14151822 AAAATATTTTTATTTTCGGAAATATTATTTACCGATTT
1 AAAATATTTTTATTTCCGG-AATATTATTTACCTATTT
14151860 TTAAATGAAA
Statistics
Matches: 163, Mismatches: 5, Indels: 8
0.93 0.03 0.05
Matches are distributed among these distances:
131 3 0.02
132 26 0.16
133 83 0.51
134 9 0.06
135 42 0.26
ACGTcount: A:0.38, C:0.13, G:0.05, T:0.45
Consensus pattern (132 bp):
AAAATATTTTTATTTCCGGAATATTATTTACCTATTTAGTTAATATTGTAACTCTCTCCATTTTA
AATTATTTTTCAATAAAATATTTACTCTAAACAAAAAATATTTAAAACCATAAAATTGATTTCTC
AA
Found at i:14155673 original size:23 final size:24
Alignment explanation
Indices: 14155631--14155676 Score: 76
Period size: 23 Copynumber: 1.9 Consensus size: 24
14155621 GAGGCTCTTG
14155631 TTCAAAAGGGAAGGGACCGGGATGA
1 TTCAAAAGGG-AGGGACCGGGATGA
14155656 TTCAAAAGGG-GGGACCGGGAT
1 TTCAAAAGGGAGGGACCGGGAT
14155677 AACTTGTAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 11 0.52
25 10 0.48
ACGTcount: A:0.33, C:0.13, G:0.41, T:0.13
Consensus pattern (24 bp):
TTCAAAAGGGAGGGACCGGGATGA
Found at i:14156249 original size:58 final size:59
Alignment explanation
Indices: 14156181--14156301 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
14156171 GGGAGGGACA
* *
14156181 GGGACGATTCATTCATTGTTGGGTACCGGACATGCAACGGTATCCGAATCCTACC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
* *
14156239 GGGACGATTCATTCATTATTGGGTACCGAACATGTAACGGTATCCGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
14156298 GGGA
1 GGGA
14156302 TTGGGGAGGG
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 51 0.88
59 7 0.12
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
Found at i:14156969 original size:5 final size:5
Alignment explanation
Indices: 14156961--14157021 Score: 113
Period size: 5 Copynumber: 12.2 Consensus size: 5
14156951 TACAAGAAGT
14156961 ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC
1 ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC
*
14157011 ACGGC ATGGC A
1 ATGGC ATGGC A
14157022 CGGTACGGCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 54 1.00
ACGTcount: A:0.21, C:0.21, G:0.39, T:0.18
Consensus pattern (5 bp):
ATGGC
Found at i:14157029 original size:15 final size:15
Alignment explanation
Indices: 14156961--14157031 Score: 97
Period size: 15 Copynumber: 4.7 Consensus size: 15
14156951 TACAAGAAGT
*
14156961 ATGGCATGGCATGGC
1 ATGGCACGGCATGGC
*
14156976 ATGGCATGGCATGGC
1 ATGGCACGGCATGGC
*
14156991 ATGGCATGGCATGGC
1 ATGGCACGGCATGGC
14157006 ATGGCACGGCATGGC
1 ATGGCACGGCATGGC
* *
14157021 ACGGTACGGCA
1 ATGGCACGGCA
14157032 GAAAATTGAA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 53 1.00
ACGTcount: A:0.21, C:0.23, G:0.39, T:0.17
Consensus pattern (15 bp):
ATGGCACGGCATGGC
Found at i:14164659 original size:42 final size:43
Alignment explanation
Indices: 14164247--14165558 Score: 1359
Period size: 43 Copynumber: 30.9 Consensus size: 43
14164237 CCCTGCTGCT
* * * * *
14164247 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTACCGATGGTGTC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * * * *
14164290 CGCGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCT
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* *
14164332 CGAGGCTCCCGCAC-ATCCAAGGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGCC
* * *
14164375 CGAGGCTCCCGCATGACCAAGGTCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
** * * *
14164418 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGTCGATGGTGCT
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * *
14164460 CGAGGTTCTCGCACGATCAA-GGCCTAGG-TGTCGATAGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
14164501 CGAGGCTCCCGTACGA-CAAGGGGCCTAGGTTTCCGATAGTGCC
1 CGAGGCTCCCGCACGACCAA-GGGCCTAGGTTGCCGATGGTGCC
* * **
14164544 CGAGGCTCCCGCACGACTAGGGGCCTAGGTTGCCGATGGTGTT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
*** * * *
14164587 CGAGGCTCCCGCAC-ATCCAATCACCAAGG-TGCTGATGGTGGC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
14164629 CGAGGCTCTCGCACGACCTAGGGCATAGG-TGTCGATGGT-CC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
14164670 CGAGGCTCTCGGATGACCAAGGGCCTAGGTTACCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
14164713 CGATGCTCCCGCACGACTAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
*
14164756 AGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
14164798 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
14164841 CGAGGCTCTCGCACGACCAAGGGCCTAGG-TGCC-ATTAGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGA-TGGTGCC
* * * *
14164883 CGAGGCTCCCGCATGACCAAGGGCCTAGGTTACCGATAG-GAC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
14164925 CGAGGCTCTCGCACGACCAGGGGCCTAGGTTACCAATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
*
14164968 CGTA-GCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTC
1 CG-AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
14165011 CGAGGCTCCCTCACGACCAAGGGCCTAGG-TGCCAATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
14165053 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTACC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
14165096 CGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
14165139 CGAGGCTCCTGTATGACCAAGGGCCTAGGTTGCTGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * ** * *
14165182 CAAGGCTCCTGCAC-ATTCAAGCACCAAGG-TCCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
*
14165224 CGAGGCTCCCGCACGACCAAGGGCCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
14165266 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCTGACGGTACC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
14165308 CGAGGCTCCCGTATGACCAAGGGCCTAGGTTACCGATGGT-AC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
14165350 CGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
14165393 CGAGGCTCCCGCACGACC-AGGAGCCTAGGTTGCCAATGGTGAC
1 CGAGGCTCCCGCACGACCAAGG-GCCTAGGTTGCCGATGGTGCC
* * ** *
14165436 CGAAGCTCTCGCA-GATCCAAGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
14165478 GGAGGCTCCCGCACGACCAAGGGGCTAGG-TGCCAATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * *
14165520 TGAGGCTCCCGCACGATCGACGTCCTAGGTTGCCGATGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
14165559 CGTCCAAGGC
Statistics
Matches: 1063, Mismatches: 176, Indels: 60
0.82 0.14 0.05
Matches are distributed among these distances:
40 3 0.00
41 56 0.05
42 484 0.46
43 514 0.48
44 6 0.01
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.16
Consensus pattern (43 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
Found at i:14165577 original size:85 final size:84
Alignment explanation
Indices: 14164247--14165558 Score: 1319
Period size: 85 Copynumber: 15.5 Consensus size: 84
14164237 CCCTGCTGCT
* * * * * *
14164247 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTACCGATGGTGTCCGCGGCTCCCGCAC-ATCCAA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
** * * *
14164310 GCACCAAGG-TGCCAATGCTGC
63 GGGCCTAGGTTGCCGATGGTGC
* * *
14164331 TCGAGGCTCCCGCAC-ATCCAAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCATGACCAA
1 -CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
*
14164395 GGTCCTAGGTTGCCGATGGTGTC
63 GGGCCTAGGTTGCCGATGGTG-C
** * * * * * *
14164418 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGTCGATGGTGCTCGAGGTTCTCGCACGATCAA-G
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* *
14164481 GCCTAGG-TGTCGATAGTGCC
65 GCCTAGGTTGCCGATGGTG-C
* * * * *
14164501 CGAGGCTCCCGTACGA-CAAGGGGCCTAGGTTTCCGATAGTGCCCGAGGCTCCCGCACGACTAGG
1 CGAGGCTCCCGCACGACCAA-GGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
*
14164565 GGCCTAGGTTGCCGATGGTGTT
64 GGCCTAGGTTGCCGATGGTG-C
*** * * * * *
14164587 CGAGGCTCCCGCAC-ATCCAATCACCAAGGTGCTGATGGTGGCCGAGGCTCTCGCACGACCTAGG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * *
14164651 GCATAGG-TGTCGATGGTCC
65 GCCTAGGTTGCCGATGGTGC
* * * * * * *
14164670 CGAGGCTCTCGGATGACCAAGGGCCTAGGTTACCGATGGTGCCCGATGCTCCCGCACGACTAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
14164735 GCCTAGGTTGCCGATGGTGC
65 GCCTAGGTTGCCGATGGTGC
14164755 CAGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
1 C-GAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
14164820 GCCTAGGTTGCCGATGGTGCC
65 GCCTAGGTTGCCGATGGTG-C
* * *
14164841 CGAGGCTCTCGCACGACCAAGGGCCTAGGTGCC-ATTAGTGCCCGAGGCTCCCGCATGACCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGA-TGGTGCCCGAGGCTCCCGCACGACCAAGG
* *
14164905 GCCTAGGTTACCGATAGG-AC
65 GCCTAGGTTGCCGAT-GGTGC
* * * *
14164925 CGAGGCTCTCGCACGACCAGGGGCCTAGGTTACCAATGGTGCCCGTA-GCTCCCGCACGACCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCG-AGGCTCCCGCACGACCAAG
14164989 GGCCTAGGTTGCCGATGGTGTC
64 GGCCTAGGTTGCCGATGGTG-C
* * *
14165011 CGAGGCTCCCTCACGACCAAGGGCCTAGGTGCCAATGGTGGCCGAGGCTCCCGCACGACCAAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
14165076 CCTAGGTTGCTGATGGTACC
66 CCTAGGTTGCCGATGGT-GC
* * * * *
14165096 CGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCTGTATGACCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
*
14165161 GCCTAGGTTGCTGATGGTGCC
65 GCCTAGGTTGCCGATGGTG-C
* * * ** * *
14165182 CAAGGCTCCTGCAC-ATTCAAGCACCAAGGTCCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
*
14165246 GCCAAGG-TGCCGATGGTGCC
65 GCCTAGGTTGCCGATGGTG-C
* * * * *
14165266 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCTGACGGTACCCGAGGCTCCCGTATGACCAAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
14165331 CCTAGGTTACCGATGGTAC
66 CCTAGGTTGCCGATGGTGC
* *
14165350 CGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACC-AGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
*
14165414 AGCCTAGGTTGCCAATGGTGAC
65 -GCCTAGGTTGCCGATGGTG-C
* * ** * *
14165436 CGAAGCTCTCGCA-GATCCAAGCACCAAGGTGCCGATGGTGCCGGAGGCTCCCGCACGACCAAGG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* *
14165500 GGCTAGG-TGCCAATGGTGC
65 GCCTAGGTTGCCGATGGTGC
* * * *
14165519 CTGAGGCTCCCGCACGATCGACGTCCTAGGTTGCCGATGG
1 C-GAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGG
14165559 CGTCCAAGGC
Statistics
Matches: 1026, Mismatches: 163, Indels: 76
0.81 0.13 0.06
Matches are distributed among these distances:
82 3 0.00
83 51 0.05
84 235 0.23
85 519 0.51
86 214 0.21
87 4 0.00
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.16
Consensus pattern (84 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
CCTAGGTTGCCGATGGTGC
Found at i:14165802 original size:24 final size:24
Alignment explanation
Indices: 14165756--14165813 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
14165746 TTTTCGATAT
*
14165756 ACCGGGATGGCTCACTGGAGCACC
1 ACCGGGATGGCTCACTCGAGCACC
*
14165780 ACCGGGATGGCTCAC-CGACGCACT
1 ACCGGGATGGCTCACTCGA-GCACC
*
14165804 ACCGGAATGG
1 ACCGGGATGG
14165814 ATCGCCGAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
23 2 0.07
24 28 0.93
ACGTcount: A:0.22, C:0.33, G:0.33, T:0.12
Consensus pattern (24 bp):
ACCGGGATGGCTCACTCGAGCACC
Found at i:14165821 original size:24 final size:24
Alignment explanation
Indices: 14165755--14165832 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 24
14165745 TTTTTCGATA
* * * *
14165755 TACCGGGATGGCTCACTGGAGCAC
1 TACCGGAATGGATCACCGAAGCAC
* * * *
14165779 CACCGGGATGGCTCACCGACGCAC
1 TACCGGAATGGATCACCGAAGCAC
*
14165803 TACCGGAATGGATCGCCGAAGCAC
1 TACCGGAATGGATCACCGAAGCAC
*
14165827 TGCCGG
1 TACCGG
14165833 GAACCTAACC
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.22, C:0.33, G:0.32, T:0.13
Consensus pattern (24 bp):
TACCGGAATGGATCACCGAAGCAC
Found at i:14166265 original size:58 final size:59
Alignment explanation
Indices: 14166194--14166312 Score: 177
Period size: 58 Copynumber: 2.0 Consensus size: 59
14166184 GAGGGACAGA
* * *
14166194 GACGGTTCATTCATTGTTGGGTACCGGACATGCAACGGTATCCGAATCCTACC-TTTGG
1 GACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTTGG
* * *
14166252 GACGATTCATTCATTATTGGGTACCGAACATGTAACGGTATCTGAATTCTACCTTTTGG
1 GACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTTGG
14166311 GA
1 GA
14166313 TTGGGGAGGG
Statistics
Matches: 54, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
58 47 0.87
59 7 0.13
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.32
Consensus pattern (59 bp):
GACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTTGG
Found at i:14166982 original size:5 final size:5
Alignment explanation
Indices: 14166974--14167014 Score: 73
Period size: 5 Copynumber: 8.2 Consensus size: 5
14166964 TACAAGAAGT
*
14166974 ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC ACGGC ATGGC A
1 ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC A
14167015 CGGTACGGCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.22, C:0.22, G:0.39, T:0.17
Consensus pattern (5 bp):
ATGGC
Found at i:14167022 original size:15 final size:15
Alignment explanation
Indices: 14166976--14167024 Score: 71
Period size: 15 Copynumber: 3.3 Consensus size: 15
14166966 CAAGAAGTAT
*
14166976 GGCATGGCATGGCAT
1 GGCATGGCATGGCAC
14166991 GGCATGGCATGGCAC
1 GGCATGGCATGGCAC
* *
14167006 GGCATGGCACGGTAC
1 GGCATGGCATGGCAC
14167021 GGCA
1 GGCA
14167025 GAAAATTGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.20, C:0.24, G:0.41, T:0.14
Consensus pattern (15 bp):
GGCATGGCATGGCAC
Found at i:14170846 original size:46 final size:46
Alignment explanation
Indices: 14170779--14170947 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 46
14170769 AACCCGCCCC
* *
14170779 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* * *
14170825 TAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
14170873 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
14170918 TAAGTGAACTCGGACTCAACTCAATGAGTT
1 TAAGTGAACTCGGACTCAACTCAACGAGTT
14170948 TGGATGCTCA
Statistics
Matches: 99, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 54 0.55
47 27 0.27
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:14170892 original size:93 final size:93
Alignment explanation
Indices: 14170784--14170954 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
14170774 GCCCCTAAGT
* *
14170784 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
14170849 CGAGTTTGGATGCCTAGTTACATTTCAC
66 CGAGTTTGGATGCCTAGTTACATTTCAC
* *
14170877 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
14170942 TGAGTTTGGATGC
66 CGAGTTTGGATGC
14170955 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTTGGATGCCTAGTTACATTTCAC
Found at i:14171404 original size:29 final size:30
Alignment explanation
Indices: 14171372--14171430 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
14171362 ATTTAATACG
14171372 AACTTTGGAAAAATTACACTTTT-CCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
14171401 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
14171431 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 20 0.77
30 6 0.23
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:14173879 original size:46 final size:46
Alignment explanation
Indices: 14173812--14173986 Score: 219
Period size: 46 Copynumber: 3.8 Consensus size: 46
14173802 AACCCGCCCC
* *
14173812 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCA
* * * *
14173858 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-TTCGCATCCA
* * **
14173904 TTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCA
14173951 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
14173987 CTCAACCATC
Statistics
Matches: 106, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
45 2 0.02
46 68 0.64
47 34 0.32
48 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCA
Found at i:14173923 original size:93 final size:93
Alignment explanation
Indices: 14173817--14173987 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
14173807 GCCCCTAAGT
***
14173817 GAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
14173882 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
14173910 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
14173975 CGAGTTCGGATGC
66 CGAGTTCGGATGC
14173988 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:14174439 original size:30 final size:30
Alignment explanation
Indices: 14174405--14174464 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
14174395 ATTTAATACG
*
14174405 AACTTTGGAAAAATTACACTTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
14174435 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
14174465 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:14185129 original size:85 final size:85
Alignment explanation
Indices: 14185006--14186401 Score: 856
Period size: 85 Copynumber: 16.5 Consensus size: 85
14184996 ACCCCTGCTA
* * * * * * *
14185006 CTCGAGGCACCCGCGCATCCAA-CGTCCTAGGTTGCCGATGGTGTCCAAGGCTCCCGCAC-ATAC
1 CTCGAGGCTCCCGCACATCCAAGC-ACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CC
* * * *
14185069 AAGCACCAAGG-TACCAATGCTG
63 AAGCACCTAGGTTGCCGATGGTG
*
14185091 CTCGAGGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGCCCAAGGCTCCCGCACGACCAA
1 CTCGAGGCTCCCGCACATCCAA-GCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
**
14185156 GGTCCTAGGTTGCCGATGGTG
65 GCACCTAGGTTGCCGATGGTG
** * * *
14185177 -TCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCAAATGGTGCCCGAGGTTCTCGCACGATCAA
1 CT-CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
*
14185241 G-GCCTAGGTTGCCGATGGTG
65 GCACCTAGGTTGCCGATGGTG
* * * ** *
14185261 CCCGAGGCTCCCGCACGA-CTAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCA
1 CTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCA
**
14185325 AGGGCCTAGGTTGCCGATGGTG
64 AGCACCTAGGTTGCCGATGGTG
* * *
14185347 -TCCGAAGCTCCCGCACATCCAAGCACCAAGGTGCCAATGGTGGCCGAGGCTCCCGCACGACCAA
1 CT-CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
*** *
14185411 GGGTCTAGG-TGCTGATGGT-
65 GCACCTAGGTTGCCGATGGTG
* * ** * * *
14185430 CCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCTGATGGTGCTCGAGGCTCCCGCACGACCA
1 CTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCA
* **
14185494 GGGGCCTAGGTTGCCGATGGTG
64 AGCACCTAGGTTGCCGATGGTG
* * * ** * * *
14185516 CCCCAAGCTCCCGCACGA-CCAAGGGCCTAGGTTTCCGATGGTGCCCGAGGCTCCTGCACGACCA
1 CTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACC-
* *
14185580 AAG-GCCTAGG-AGCCGATGGTG
63 AAGCACCTAGGTTGCCGATGGTG
* * * * *
14185601 CCCGAGGCT--CTCACATGACCAAGGACCTAGGTTGCCGATGGTACCCGAGGCTCCCGCACGACC
1 CTCGAGGCTCCCGCACAT--CCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACC
** *
14185664 -AGTGGCCTAGGTTGCAGATGGTG
63 AAG-CACCTAGGTTGCCGATGGTG
* * * * *
14185687 CCCGAAGCTCCTGCACGA-CCAATG-GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACC
1 CTCGAGGCTCCCGCAC-ATCCAA-GCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACC
** *
14185750 AAGGGCTTAGG-TGCCGATGGTG
63 AAGCACCTAGGTTGCCGATGGTG
* * ** * * **
14185772 CCCGAGGCTCCCGTACGA-CCAAGGGCCTAGGTTGCCGATGGT-ACCGAGGCTCTTGCACGACCA
1 CTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCA
* **
14185835 GGGGCCTAGGTTGCCGATGGTG
64 AGCACCTAGGTTGCCGATGGTG
* * *** * * *
14185857 CGCGAAGCTCCCGCACGA-CCAAGGGGCTAGGTTGCTGATGGTGTCCGAGGCT----CACGACCA
1 CTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCA
**
14185917 AGGGCCTAGG-TGCCGATGGTG
64 AGCACCTAGGTTGCCGATGGTG
* ** * *
14185938 -TCCGAGGCTCCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACC
1 CT-CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACC
* **
14186001 AGGGGCCTAGGTTGCCGATGGTG
63 AAGCACCTAGGTTGCCGATGGTG
* * ** ** * *
14186024 CCCGAGGCTCCCGTACGGCCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAA
1 CTCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
** * *
14186089 GGGCCAAGG-TGCTGATGGTG
65 GCACCTAGGTTGCCGATGGTG
* ** * * * *
14186109 CCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTACCC-AGGCTCTCGCACGACCAG
1 CTCGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
**
14186172 GGGCCTAGGTTGCCGATGGTG
65 GCACCTAGGTTGCCGATGGTG
* ** * * * *
14186193 CCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTACCGATGGTGACCGAGGCTCCTGCAC-ATCC
1 CTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CC
* *
14186256 AAGCA-CTA-ATGTGCTGATGGTG
63 AAGCACCTAGGT-TGCCGATGGTG
*** * ** * *
14186278 C-CGGAGGCTCCCGCACGA-CCAAGGGTCTAGGTGCCGATGGTGCTTGAGGCTCCCACACGACCG
1 CTC-GAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCA
* * *
14186341 A-CGTCCTAGGTTACCGATGGCG
64 AGC-ACCTAGGTTGCCGATGGTG
* * ** * *
14186363 -TCCAAGGCTCCAGCATGTCCAAGCAACAATGTGCCGATG
1 CT-CGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATG
14186402 CTCCCGCACC
Statistics
Matches: 1107, Mismatches: 151, Indels: 106
0.81 0.11 0.08
Matches are distributed among these distances:
81 56 0.05
82 18 0.02
83 53 0.05
84 192 0.17
85 477 0.43
86 301 0.27
87 6 0.01
88 3 0.00
89 1 0.00
ACGTcount: A:0.19, C:0.33, G:0.32, T:0.16
Consensus pattern (85 bp):
CTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
CACCTAGGTTGCCGATGGTG
Found at i:14185205 original size:128 final size:129
Alignment explanation
Indices: 14185031--14186360 Score: 1573
Period size: 128 Copynumber: 10.5 Consensus size: 129
14185021 CATCCAACGT
* * * ** * * * * *
14185031 CCTAGGTTGCCGATGGTGTCCAAGGCTCCCGCAC-ATACAAGCACCAAGG-TACCAATGCTGCTC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* * *
14185094 GAGGCTCCCGCAC-ATCCAAGGCACCAAGG-TGCCGATGGTGCCCAAGGCTCCCGCACGACCAAG
65 GAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
*
14185157 GT
128 GG
* ** * **
14185159 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCAAATGGTGCCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* * * * *
14185222 GAGGTTCTCGCACGATCAA-GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACTAGGGG
65 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
14185286 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* ** * * *
14185351 AAGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGGTGGCCGAGGCTCCCGCACGACCAAGGG
66 AGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * *
14185414 TCTAGG-TGCTGATGGT-CCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCTGATGGTGCTCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * *
14185477 AGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCCAAGCTCCCGCACGACCAAGGG
66 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * *
14185541 CCTAGGTTTCCGATGGTGCCCGAGGCTCCTGCACGACCAAAGGCCTAGG-AGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * * *
14185605 AGGCTCTCACATGACCAAGGACCTAGGTTGCCGATGGTACCCGAGGCTCCCGCACGACC-AGTGG
66 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG-GG
* * * *
14185669 CCTAGGTTGCAGATGGTGCCCGAAGCTCCTGCACGACCAATGGCCTAGGTTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
14185734 AGGCTCCCGCACGACCAAGGGCTTAGG-TGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGG
66 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** * *
14185797 CCTAGGTTGCCGATGGT-ACCGAGGCTCTTGCACGACCAGGGGCCTAGGTTGCCGATGGTGCGCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * *
14185861 AAGCTCCCGCACGACCAAGGGGCTAGGTTGCTGATGGTGTCCGAGGCT----CACGACCAAGGG
66 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
14185921 CCTAGG-TGCCGATGGTGTCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * *
14185985 AGGCTCCCGTACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGGCCAAGGG
66 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
14186049 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCAAGG-TGCTGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * *
14186113 AGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTACCC-AGGCTCTCGCACGACCAGGGG
66 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
14186175 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGACCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * *
14186240 AGGCTCCTGCAC-ATCCAA--GCACTA-ATGTGCTGATGGTGCCGGAGGCTCCCGCACGACCAAG
66 AGGCTCCCGCACGA-CCAAGGGC-CTAGGT-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
14186301 GG
128 GG
* ** * * * * *
14186303 TCTAGG-TGCCGATGGTGCTTGAGGCTCCCACACGACCGACGTCCTAGGTTACCGATGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
14186361 CGTCCAAGGC
Statistics
Matches: 1043, Mismatches: 133, Indels: 53
0.85 0.11 0.04
Matches are distributed among these distances:
123 10 0.01
124 102 0.10
125 2 0.00
126 136 0.13
127 288 0.28
128 395 0.38
129 110 0.11
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.16
Consensus pattern (129 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:14186317 original size:42 final size:43
Alignment explanation
Indices: 14185031--14186360 Score: 1573
Period size: 43 Copynumber: 31.4 Consensus size: 43
14185021 CATCCAACGT
* * * **
14185031 CCTAGGTTGCCGATGGTGTCCAAGGCTCCCGCAC-ATACAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * * *
14185074 CCAAGG-TACCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-G
* * *
14185117 CCAAGG-TGCCGATGGTGCCCAAGGCTCCCGCACGACCAAGGT
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* **
14185159 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* ** * * *
14185202 CCAAGG-TGCAAATGGTGCCCGAGGTTCTCGCACGATCAA-GG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
14185243 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACTAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
14185286 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
14185329 CCTAGGTTGCCGATGGTGTCCGAAGCTCCCGCAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * *
14185372 CCAAGG-TGCCAATGGTGGCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
14185414 TCTAGG-TGCTGATGGT-CCCGAGGCTCTCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
14185455 CCTAGGTTGCTGATGGTGCTCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
14185498 CCTAGGTTGCCGATGGTGCCCCAAGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
14185541 CCTAGGTTTCCGATGGTGCCCGAGGCTCCTGCACGACCAAAGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * *
14185584 CCTAGG-AGCCGATGGTGCCCGAGGCTCTCACATGACCAAGGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
14185626 CCTAGGTTGCCGATGGTACCCGAGGCTCCCGCACGACC-AGTGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG-GG
* * * *
14185669 CCTAGGTTGCAGATGGTGCCCGAAGCTCCTGCACGACCAATGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
14185712 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
14185755 CTTAGG-TGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** *
14185797 CCTAGGTTGCCGATGGT-ACCGAGGCTCTTGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
14185839 CCTAGGTTGCCGATGGTGCGCGAAGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
14185882 GCTAGGTTGCTGATGGTGTCCGAGGCT----CACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
14185921 CCTAGG-TGCCGATGGTGTCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
14185963 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
14186006 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGGCCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
14186049 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
14186092 CCAAGG-TGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
14186134 CCTAGG-TGCCGATGGTACCC-AGGCTCTCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
14186175 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
14186218 CCTAGGTTACCGATGGTGACCGAGGCTCCTGCAC-ATCCAA--G
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * *
14186259 CACTA-ATGTGCTGATGGTGCCGGAGGCTCCCGCACGACCAAGGG
1 C-CTAGGT-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** * * * *
14186303 TCTAGG-TGCCGATGGTGCTTGAGGCTCCCACACGACCGACGT
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
14186345 CCTAGGTTACCGATGG
1 CCTAGGTTGCCGATGG
14186361 CGTCCAAGGC
Statistics
Matches: 1104, Mismatches: 152, Indels: 62
0.84 0.12 0.05
Matches are distributed among these distances:
38 19 0.02
39 17 0.02
41 61 0.06
42 394 0.36
43 610 0.55
44 3 0.00
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.16
Consensus pattern (43 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:14186592 original size:24 final size:24
Alignment explanation
Indices: 14186559--14186636 Score: 93
Period size: 24 Copynumber: 3.2 Consensus size: 24
14186549 TTTTGATATT
*
14186559 CCGGGATGGCTCACCGGAGCACCG
1 CCGGGATGGCTCGCCGGAGCACCG
* * * *
14186583 TCGGGATGGCTCGCCGAAACACCA
1 CCGGGATGGCTCGCCGGAGCACCG
* *
14186607 CCGGAATGGATCGCCGGAGCACCG
1 CCGGGATGGCTCGCCGGAGCACCG
14186631 CCGGGA
1 CCGGGA
14186637 ACCTAATCGG
Statistics
Matches: 42, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.21, C:0.35, G:0.36, T:0.09
Consensus pattern (24 bp):
CCGGGATGGCTCGCCGGAGCACCG
Found at i:14187106 original size:58 final size:59
Alignment explanation
Indices: 14187042--14187157 Score: 162
Period size: 58 Copynumber: 2.0 Consensus size: 59
14187032 GGACATGGAT
* * *
14187042 GATTCATTCATTGTTGGGTACCGGACATGCAACGATATTCGAATCCTACC-TTTGGGAC
1 GATTCATTCATTATTGGGTACCGAACATGCAACGATATCCGAATCCTACCTTTTGGGAC
* * * *
14187100 GATTCATTCATTATTGGGTACTGAACATGTAACGGTATCCGAATTCTACCTTTTGGGA
1 GATTCATTCATTATTGGGTACCGAACATGCAACGATATCCGAATCCTACCTTTTGGGA
14187158 TTGGGGAGCG
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
58 43 0.86
59 7 0.14
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.34
Consensus pattern (59 bp):
GATTCATTCATTATTGGGTACCGAACATGCAACGATATCCGAATCCTACCTTTTGGGAC
Found at i:14194855 original size:43 final size:43
Alignment explanation
Indices: 14194808--14196016 Score: 1247
Period size: 43 Copynumber: 28.4 Consensus size: 43
14194798 CCCTGCTGCT
* * * * *
14194808 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTTCCGATGGTGTC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
14194851 CGAGGCTCCCGCAC-ATCCAAGGCACCAAGG-TGCCGATAGTGCC
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGCC
* *
14194894 CGAGGCTCCCGCACGACCAAGGTCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * ** *
14194937 CGAGGGTTCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* ** *
14194979 CGAGGTTCTTGCACGATCAA-GGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * *
14195021 CAAGGCTCCCGGACGACC-AGGGACCTACGTTGCAGATGGTGTC
1 CGAGGCTCCCGCACGACCAAGGG-CCTAGGTTGCCGATGGTGCC
* ** * * *
14195064 CGAGGCTCCCGCAC-ATCCATGCACC-A-ATATGCCGATGGCGGC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGT-TGCCGATGGTGCC
*
14195106 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TACCGATGGT-CC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * *
14195147 GGAGGCTCTCGCACGACCAAGGGCCTTGGTTGTCGATGGCGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
14195190 CGAGGCTCCCGCACGACTAGGGGCCTAGGTTACCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
*
14195233 CCAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
14195276 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
14195319 TGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCTGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
*
14195362 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCAATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
14195404 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGTCGATGGT-AC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * *
14195446 CGAGGCTCTCGCACGACCAGGGGCCTAGGTTGTCGATGGAGGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
14195489 CGAGGCTCCCGCACGACCACGGGCCTAGGTTGCCGATGATGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
14195532 TGAGGCTCCCTCACGACCAAGGGCCTAGG-TGCCGATGGCGGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * *
14195574 TGAGGCTTCCGCACGACCAAGAGCCTAGTTTGTCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
14195617 AGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * * *
14195660 CGAGGCTCCCGTACGACCAAGGGCGTATGTTACCGACGATGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * ** * *
14195703 CGAGGCACACGCAC-ATCCCAGCACC-AGGGTACCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* *
14195745 CGAGGCTCCCGCACTACCAAGGGCCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
14195787 CGAGGCTCCCGCATGAACAAGGGCCTAGGTTGCCGATGGT-AC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
14195829 CGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * ** * *
14195872 TGAGGCTGCTGCACGACCAAGGGCCTAGGTAACCAATGGTGAC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * ** *
14195915 CAAGGCTCCCGCAC-ATTCAAGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * *
14195957 AGAGGCTCCCATACGACCAAGGGGCTAGG-TGCCGACGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
*
14195999 TGAGGCTCCCGCACGACC
1 CGAGGCTCCCGCACGACC
14196017 GACATCCTAG
Statistics
Matches: 963, Mismatches: 177, Indels: 53
0.81 0.15 0.04
Matches are distributed among these distances:
41 34 0.04
42 379 0.39
43 543 0.56
44 7 0.01
ACGTcount: A:0.19, C:0.33, G:0.33, T:0.16
Consensus pattern (43 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
Found at i:14195359 original size:298 final size:296
Alignment explanation
Indices: 14194808--14196016 Score: 1229
Period size: 298 Copynumber: 4.1 Consensus size: 296
14194798 CCCTGCTGCT
* * * * * *
14194808 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTTCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGG-TACCGATGGT-ACCGAGGCTCTCGCACGA-CCAA
* * * * * *
14194871 GGCACCAAGG-TGCCGATAGTGCCCGAGGCTCCCGCACGACCAAGGTCCTAGGTTGCCGATGGTG
62 GG-GCCTAGGTTGTCGATGGAGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG
* * ** * * ** *
14194935 TCCGAGGGTTCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCTTGCACGATCAA
126 TCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
* * * *
14194999 -GGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCGGACGACCAGGGACCTACGTTGCAGATGGTGT
190 GGGCCTAGGTTGCCGATGGTG-CCAAGGCTCCCGCACGACCAGGGGCCTAGGTTGCAGATGGTGC
* ** * * *
14195063 CCGAGGCTCCCGCAC-ATCCATGCACCAATATGCCGATGGCGGC
254 CCGAGGCTCCCGCACGA-CCAAGGGCCTATATGCCGATGGTGCC
14195106 CGAGGCTCCCGCACGACCAAGGGCCTAGGTACCGATGGT-CCGGAGGCTCTCGCACGACCAAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTACCGATGGTACC-GAGGCTCTCGCACGACCAAGGG
* * * * * * *
14195170 CCTTGGTTGTCGATGGCGCCCGAGGCTCCCGCACGACTAGGGGCCTAGGTTACCGATGGTGCCCC
65 CCTAGGTTGTCGATGGAGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCG
14195235 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
130 AGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* *
14195300 CTAGGTTGCCGATGGTGCCTGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCTGATGGTGCCCGA
194 CTAGGTTGCCGATGGTGCC-AAGGCTCCCGCACGACCAGGGGCCTAGGTTGCAGATGGTGCCCGA
** *
14195365 GGCTCCCGCACGACCAAGGGCCTAGGTGCCAATGGTGCC
258 GGCTCCCGCACGACCAAGGGCCTATATGCCGATGGTGCC
** *
14195404 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGTCGATGGTACCGAGGCTCTCGCACGACCAGGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TACCGATGGTACCGAGGCTCTCGCACGACCAAGGG
* * * *
14195469 CCTAGGTTGTCGATGGAGGCCGAGGCTCCCGCACGACCACGGGCCTAGGTTGCCGATGATGTCTG
65 CCTAGGTTGTCGATGGAGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCG
* * * * * *
14195534 AGGCTCCCTCACGACCAAGGGCCTAGGTGCCGATGGCGGCTGAGGCTTCCGCACGACCAAGAGCC
130 AGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCC
* * * *
14195599 TAGTTTGTCGATGGTGCCAGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATGGTGCCCGAG
195 TAGGTTGCCGATGGTGCCA-AGGCTCCCGCACGACCAGGGGCCTAGGTTGCAGATGGTGCCCGAG
* * * * * *
14195664 GCTCCCGTACGACCAAGGGCGTATGTTACCGACGATGCC
259 GCTCCCGCACGACCAAGGGCCTAT-ATGCCGATGGTGCC
* * * ** * * *
14195703 CGAGGCACACGCAC-ATCCCAGCACC-AGGGTACCGATGGTGCCCGAGGCTCCCGCACTACCAAG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTA-GGTACCGATGGT-ACCGAGGCTCTCGCACGACCAAG
* * * * * *
14195766 GGCCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCATGAACAAGGGCCTAGGTTGCCGATGGT-AC
63 GGCCTAGGTTGTCGATGGAGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTC
* * * * *
14195829 CGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCTGAGGCTGCTGCACGACCAAGG
128 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
** * * * ** * *
14195894 GCCTAGGTAACCAATGGTGACCAAGGCTCCCGCAC-ATTCAAGCACCAAGG-TGCCGATGGTGCC
192 GCCTAGGTTGCCGATGGTG-CCAAGGCTCCCGCACGA-CCAGGGGCCTAGGTTGCAGATGGTGCC
* ** * ** *
14195957 AGAGGCTCCCATACGACCAAGGGGCTAGGTGCCGACGGTGCC
255 CGAGGCTCCCGCACGACCAAGGGCCTATATGCCGATGGTGCC
*
14195999 TGAGGCTCCCGCACGACC
1 CGAGGCTCCCGCACGACC
14196017 GACATCCTAG
Statistics
Matches: 767, Mismatches: 124, Indels: 42
0.82 0.13 0.05
Matches are distributed among these distances:
295 6 0.01
296 111 0.14
297 105 0.14
298 373 0.49
299 170 0.22
300 2 0.00
ACGTcount: A:0.19, C:0.33, G:0.33, T:0.16
Consensus pattern (296 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTACCGATGGTACCGAGGCTCTCGCACGACCAAGGGC
CTAGGTTGTCGATGGAGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGA
GGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
AGGTTGCCGATGGTGCCAAGGCTCCCGCACGACCAGGGGCCTAGGTTGCAGATGGTGCCCGAGGC
TCCCGCACGACCAAGGGCCTATATGCCGATGGTGCC
Found at i:14196037 original size:85 final size:85
Alignment explanation
Indices: 14194808--14196016 Score: 1235
Period size: 85 Copynumber: 14.2 Consensus size: 85
14194798 CCCTGCTGCT
* * * * *
14194808 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTTCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
* * *
14194871 GGCACCAAGGTGCCGATAGTGCC
64 GG-GCCTAGGTGCCGATGGTGCC
* * * *
14194894 CGAGGCTCCCGCACGACCAAGGTCCTAGGTTGCCGATGGTGTCCGAGGGTTCCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
** *
14194958 CACCAAGGTGCCGATGGTGCC
65 GGCCTAGGTGCCGATGGTGCC
* ** * * *
14194979 CGAGGTTCTTGCACGATCAA-GGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCGGACGACC-AGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * *
14195042 GACCTACGTTGCAGATGGTGTC
66 G-CCTA-GGTGCCGATGGTGCC
* ** * * *
14195064 CGAGGCTCCCGCAC-ATCCATGCACC-A-ATATGCCGATGGCGGCCGAGGCTCCCGCACGACCAA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGT-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAA
*
14195126 GGGCCTAGGTACCGATGGT-CC
64 GGGCCTAGGTGCCGATGGTGCC
* * * * * * *
14195147 GGAGGCTCTCGCACGACCAAGGGCCTTGGTTGTCGATGGCGCCCGAGGCTCCCGCACGACTAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
*
14195212 GCCTAGGTTACCGATGGTGCC
66 GCCTAGG-TGCCGATGGTGCC
*
14195233 CCAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
14195298 GCCTAGGTTGCCGATGGTGCC
66 GCCTAGG-TGCCGATGGTGCC
* * *
14195319 TGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCTGATGGTGCCCGAGGCTCCCGCACGACCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
*
14195384 GCCTAGGTGCCAATGGTGCC
66 GCCTAGGTGCCGATGGTGCC
* * * *
14195404 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGTCGATGGT-ACCGAGGCTCTCGCACGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * *
14195468 GCCTAGGTTGTCGATGGAGGC
66 GCCTAGG-TGCCGATGGTGCC
* * * * *
14195489 CGAGGCTCCCGCACGACCACGGGCCTAGGTTGCCGATGATGTCTGAGGCTCCCTCACGACCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* *
14195554 GCCTAGGTGCCGATGGCGGC
66 GCCTAGGTGCCGATGGTGCC
* * * * * * *
14195574 TGAGGCTTCCGCACGACCAAGAGCCTAGTTTGTCGATGGTGCCAGAGGCTCCCGCACGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
*
14195639 GCCTAGGTTACCGATGGTGCC
66 GCCTAGG-TGCCGATGGTGCC
* * * * * * * * *
14195660 CGAGGCTCCCGTACGACCAAGGGCGTATGTTACCGACGATGCCCGAGGCACACGCAC-ATCCCAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
** *
14195724 CACC-AGGGTACCGATGGTGCC
65 GGCCTA-GGTGCCGATGGTGCC
* * * *
14195745 CGAGGCTCCCGCACTACCAAGGGCCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCATGAACAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
*
14195809 GCCTAGGTTGCCGATGGT-AC
66 GCCTAGG-TGCCGATGGTGCC
* * * * *
14195829 CGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCTGAGGCTGCTGCACGACCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * *
14195894 GCCTAGGTAACCAATGGTGAC
66 GCCTAGGT-GCCGATGGTGCC
* * ** * * **
14195915 CAAGGCTCCCGCAC-ATTCAAGCACCAAGG-TGCCGATGGTGCCAGAGGCTCCCATACGACCAAG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
* *
14195978 GGGCTAGGTGCCGACGGTGCC
65 GGCCTAGGTGCCGATGGTGCC
*
14195999 TGAGGCTCCCGCACGACC
1 CGAGGCTCCCGCACGACC
14196017 GACATCCTAG
Statistics
Matches: 932, Mismatches: 165, Indels: 54
0.81 0.14 0.05
Matches are distributed among these distances:
83 21 0.02
84 189 0.20
85 403 0.43
86 318 0.34
87 1 0.00
ACGTcount: A:0.19, C:0.33, G:0.33, T:0.16
Consensus pattern (85 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
GCCTAGGTGCCGATGGTGCC
Found at i:14196049 original size:127 final size:127
Alignment explanation
Indices: 14195189--14196055 Score: 306
Period size: 128 Copynumber: 6.8 Consensus size: 127
14195179 TCGATGGCGC
* * * * ** *
14195189 CCGAGGCTCCCGCACGACTAGGGGCCTAGGTTACCGATGGTGCCCCAGGCTCCCGCACGACCAAG
1 CCGAGGCTCCCACACGACCAGGGGCCTAGGTTGCCGACGGTGCCTGAGGCTCCCGCACGACCAAC
* ** * * * * * * ** * *
14195254 GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTG
66 AGCCTAGGTAACCAATGGCGACCAAGGCTCCAGCAC-ATTCAAGCACCAAGG-TGCCGATGGTA
* * * *
14195317 CCTGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCTGATGGTGCCCGAGGCTCCCGCACGACCAA
1 CC-GAGGCTCCCACACGACCAGGGGCCTAGGTTGCCGACGGTGCCTGAGGCTCCCGCACGACCAA
** * * * * * * ** * *
14195382 GGGCCTAGGT-GCCAATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGTCGATGGTA
65 CAGCCTAGGTAACCAATGGCGACCAAGGCTCCAGCAC-ATTCAAGCACCAAGG-TGCCGATGGTA
* * * * *
14195445 CCGAGGCTCTCGCACGACCAGGGGCCTAGGTTGTCGATGGAGGCC-GAGGCTCCCGCACGACC-A
1 CCGAGGCTCCCACACGACCAGGGGCCTAGGTTGCCGACGG-TGCCTGAGGCTCCCGCACGACCAA
* ** * ** * ** ** * ** * *
14195508 CGGGCCTAGGTTGCCGATGATGTCTGAGGCTCCCTCACGA-CCAAGGGCCTAGGTGCCGATGGCG
65 C-AGCCTAGGTAACCAATGGCGACCAAGGCTCCAGCAC-ATTCAAGCACCAAGGTGCCGATGG-T
*
14195572 G
127 A
* * * * * * * * * **
14195573 CTGAGGCTTCCGCACGACCAAGAGCCTAGTTTGTCGATGGTGCCAGAGGCTCCCGCACGACCAGG
1 CCGAGGCTCCCACACGACCAGGGGCCTAGGTTGCCGACGGTGCCTGAGGCTCCCGCACGACCAAC
* * * * * * * * * ** * * * * * * *
14195638 GGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGTACGA-CCAAGGGCGTATGTTACCGACGATGC
66 AGCCTAGGTAACCAATGGCGACCAAGGCTCCAGCAC-ATTCAAGCAC-CAAGGTGCCGATGGT-A
* ** * * * * *
14195702 CCGAGGCACACGCACATC--CCA-GCACC-AGGGTACCGATGGTGCCCGAGGCTCCCGCACTACC
1 CCGAGGCTC-C-CACA-CGACCAGGGGCCTAGGTTGCCGACGGTGCCTGAGGCTCCCGCACGACC
** * * * * * * * * * ** *
14195763 AAGGGCCAAGGT-GCCGATGGTGCCCGAGGCTCCCGCATGA-ACAAGGGCCTAGGTTGCCGATGG
63 AACAGCCTAGGTAACCAATGGCGACCAAGGCTCCAGCA-CATTCAAGCACCAAGG-TGCCGATGG
14195826 TA
126 TA
* * * * * *
14195828 CCGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCTGAGGCTGCTGCACGACCAAG
1 CCGAGGCTCCCACACGACCAGGGGCCTAGGTTGCCGACGGTGCCTGAGGCTCCCGCACGACCAAC
* * * *
14195893 GGCCTAGGTAACCAATGGTGACCAAGGCTCCCGCACATTCAAGCACCAAGGTGCCGATGGTG
66 AGCCTAGGTAACCAATGGCGACCAAGGCTCCAGCACATTCAAGCACCAAGGTGCCGATGGTA
* *
14195955 CCAGAGGCTCCCATACGACCAAGGGG-CTAGG-TGCCGACGGTGCCTGAGGCTCCCGCACGACCG
1 CC-GAGGCTCCCACACGACC-AGGGGCCTAGGTTGCCGACGGTGCCTGAGGCTCCCGCACGACCA
* * ** * * *
14196018 ACATCCTAGTTCGCCGATGGCGTCCATGGCTCCAGCAC
64 ACAGCCTAGGTAACCAATGGCGACCAAGGCTCCAGCAC
14196056 GTCCAAGTAG
Statistics
Matches: 607, Mismatches: 110, Indels: 45
0.80 0.14 0.06
Matches are distributed among these distances:
123 1 0.00
124 3 0.00
125 3 0.00
126 13 0.02
127 218 0.36
128 272 0.45
129 89 0.15
130 4 0.01
131 3 0.00
132 1 0.00
ACGTcount: A:0.19, C:0.33, G:0.33, T:0.15
Consensus pattern (127 bp):
CCGAGGCTCCCACACGACCAGGGGCCTAGGTTGCCGACGGTGCCTGAGGCTCCCGCACGACCAAC
AGCCTAGGTAACCAATGGCGACCAAGGCTCCAGCACATTCAAGCACCAAGGTGCCGATGGTA
Found at i:14196273 original size:24 final size:24
Alignment explanation
Indices: 14196241--14196287 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
14196231 ATATTCTGGG
* * *
14196241 ATGGCTCGCTGAAGCACTGCCAGA
1 ATGGATCGCCGAAGCACCGCCAGA
*
14196265 ATGGATCGCCGGAGCACCGCCAG
1 ATGGATCGCCGAAGCACCGCCAG
14196288 GAACCTAACC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.23, C:0.32, G:0.32, T:0.13
Consensus pattern (24 bp):
ATGGATCGCCGAAGCACCGCCAGA
Found at i:14196781 original size:58 final size:58
Alignment explanation
Indices: 14196690--14196805 Score: 169
Period size: 58 Copynumber: 2.0 Consensus size: 58
14196680 GGGAGGGATA
* * *
14196690 GGGACGATTCATTCATTGTTGGGTACTGGACATGCAACGGTATCCGAATCCTACCTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTT
* * * *
14196748 GGGACTATTCATTCATTATTGGGTACCGAACATGTAACGGTATCTGAATTCTACCTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTT
14196806 TGAGATTGGG
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
58 51 1.00
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.34
Consensus pattern (58 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTT
Found at i:14197492 original size:15 final size:15
Alignment explanation
Indices: 14197472--14197503 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
14197462 TACAAGAAGT
*
14197472 ACGGCATGGCATGGC
1 ACGGCATGGCACGGC
14197487 ACGGCATGGCACGGC
1 ACGGCATGGCACGGC
14197502 AC
1 AC
14197504 AGCAGAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.31, G:0.38, T:0.09
Consensus pattern (15 bp):
ACGGCATGGCACGGC
Found at i:14199245 original size:42 final size:43
Alignment explanation
Indices: 14199197--14199416 Score: 200
Period size: 42 Copynumber: 5.2 Consensus size: 43
14199187 GACTTTGCCT
* *
14199197 GAGGCTCCCGCACAACCAAGGGCCTAGGTTGCCGATGGTATC-
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTACCA
14199239 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGACC-
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGT-ACCA
* ** * *
14199282 GAAGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCA
1 GAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTACCA
* * * * * * *
14199324 GAGGCTCCCGGATGACTAAGGGGCTAGG-TGTCGATGGTGCCT
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTACCA
* *** *
14199366 GAGGCTCCCGCACGACCGACATCCTAGGTTGCCGATGGCATCCA
1 GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTA-CCA
14199410 -AGGCTCC
1 GAGGCTCC
14199417 AGTACGTCCA
Statistics
Matches: 143, Mismatches: 29, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
41 2 0.01
42 99 0.69
43 40 0.28
44 2 0.01
ACGTcount: A:0.20, C:0.32, G:0.32, T:0.16
Consensus pattern (43 bp):
GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTACCA
Found at i:14199328 original size:85 final size:84
Alignment explanation
Indices: 14199192--14199403 Score: 223
Period size: 85 Copynumber: 2.5 Consensus size: 84
14199182 TTGCCGACTT
* ** * *
14199192 TGCCTGAGGCTCCCGCACAACCAAGGGCCTAGGTTGCCGATGGTATCGAGGCTCCCGCACGACCA
1 TGCCTGAAGCTCCCGCACAACCAAGCACCAAGGTTGCCGATGGTACCGAGGCTCCCGCACGACCA
14199257 AGGGCCTAGGTTGCCGATGG
66 AGGGCCTAGG-TGCCGATGG
* * * *
14199277 TGACC-GAAGCTCCCGCACATCCAAGCACCAAGG-TGCCGATGGTGCCAGAGGCTCCCGGATGAC
1 TG-CCTGAAGCTCCCGCACAACCAAGCACCAAGGTTGCCGATGGTACC-GAGGCTCCCGCACGAC
* * *
14199340 TAAGGGGCTAGGTGTCGATGG
64 CAAGGGCCTAGGTGCCGATGG
* * * *
14199361 TGCCTGAGGCTCCCGCACGACCGA-CATCCTAGGTTGCCGATGG
1 TGCCTGAAGCTCCCGCACAACCAAGCA-CCAAGGTTGCCGATGG
14199404 CATCCAAGGC
Statistics
Matches: 105, Mismatches: 17, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
83 4 0.04
84 41 0.39
85 58 0.55
86 2 0.02
ACGTcount: A:0.20, C:0.31, G:0.33, T:0.17
Consensus pattern (84 bp):
TGCCTGAAGCTCCCGCACAACCAAGCACCAAGGTTGCCGATGGTACCGAGGCTCCCGCACGACCA
AGGGCCTAGGTGCCGATGG
Found at i:14200173 original size:58 final size:59
Alignment explanation
Indices: 14200082--14200202 Score: 163
Period size: 58 Copynumber: 2.1 Consensus size: 59
14200072 GGGAGGGACA
* * * *
14200082 GGGACGATTCATTCATTGTTGGGTACCGGACATGCAACGGTATCCGAATCCTACC-TTT
1 GGGACGATTCATTCATTATTGGGAACCGAACATGCAACGGTATCCGAATCCAACCTTTT
** * *
14200140 GGGACGATTCATTCATTATTGGGAATTGAACATGTAACGGTATCCGAATTCAACCTTTT
1 GGGACGATTCATTCATTATTGGGAACCGAACATGCAACGGTATCCGAATCCAACCTTTT
14200199 GGGA
1 GGGA
14200203 TTGGGGAGGG
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
58 47 0.87
59 7 0.13
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.31
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGAACCGAACATGCAACGGTATCCGAATCCAACCTTTT
Found at i:14211815 original size:45 final size:46
Alignment explanation
Indices: 14211706--14211823 Score: 139
Period size: 46 Copynumber: 2.6 Consensus size: 46
14211696 AGCTTCAGTA
* * ** *
14211706 TGCTCCACTGCAACTTCAGGGAGACATGGTTCGTGTGTTTTTATCC
1 TGCTCCACTGCAACTTCAGGGAGACAAGGATCGTGTACTTTGATCC
* * * **
14211752 TGCTCTACTGCAACTTCAGAGAGATAAGGATCGTG-ACTTTGATTT
1 TGCTCCACTGCAACTTCAGGGAGACAAGGATCGTGTACTTTGATCC
14211797 TGCTCCACTGCAACTTCAGGGAGACAA
1 TGCTCCACTGCAACTTCAGGGAGACAA
14211824 AATCTTGCAA
Statistics
Matches: 59, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
45 29 0.49
46 30 0.51
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.31
Consensus pattern (46 bp):
TGCTCCACTGCAACTTCAGGGAGACAAGGATCGTGTACTTTGATCC
Found at i:14212241 original size:132 final size:132
Alignment explanation
Indices: 14211921--14212835 Score: 1312
Period size: 132 Copynumber: 6.9 Consensus size: 132
14211911 CAATCGTCAG
* * * * *
14211921 CCTACTCCACAACAACTTTAGGGAGCTAGGGTGGT-AGTCTAAATCTGCTTCACTGCAACATCAG
1 CCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACT-TAAATCTGCTTCACTGCAACTTCAG
* * ** * * * * *
14211985 GAAACCTAGATTCACCGTCTTTGATCTGTTCGACTGCAA-TCTCAGGGAAACAAAATCTATATTT
65 GAAGCCAAGATTCGTCGTCTTTGATCTGCTCCACTGCAACT-TCAGGGAAACAAGATCTAAAATT
*
14212049 CTCAG
129 -TCAA
* * * *
14212054 CCTACTCCACTACAACTTTAGGGAGCTAGGTTAATGGCTTAAATCTGCCTGACTGCAACTTCAGG
1 CCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCTGCTTCACTGCAACTTCAGG
* * ** * ** *
14212119 AAGCCTAGATTCGCCGTCTTCAATCTGCTCCACTGTAACTTCAGGGAAAGGAGACCTAAAATTTC
66 AAGCCAAGATTCGTCGTCTTTGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCTAAAATTTC
*
14212184 AG
131 AA
* * *
14212186 CCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTAACTTAAATCTACTTCACTGCAACTTTAGG
1 CCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCTGCTTCACTGCAACTTCAGG
*
14212251 AAGCCAAGATTCGTCGTCTTTGATCTGCTCCACTGCAACTTCAGGGAAACGAGATCTAAAATTTC
66 AAGCCAAGATTCGTCGTCTTTGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCTAAAATTTC
14212316 AA
131 AA
*
14212318 CCTACTCCACTACAACTTTAGGGAGCTAGGTTAATGACTTAAATCTGCTTCACTGCAACTTCAGG
1 CCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCTGCTTCACTGCAACTTCAGG
*
14212383 AAGCCAAGATTCGTCGTCTTTGATCTGCTCCACTACAACTTCAGGGAAACAAGATCTAAAATTTC
66 AAGCCAAGATTCGTCGTCTTTGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCTAAAATTTC
14212448 AA
131 AA
* *
14212450 CCTACTCCACTACAACTTTATGGAGCTAGGTTAGTGACTTAAATCTACTTCACTGCAACTTCAGG
1 CCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCTGCTTCACTGCAACTTCAGG
* * * * * *
14212515 AAGTCAAGATTCATCATCTTCGATCTGCTCCACTGCAACTTTAGGGAAACAGGATCTAAAATTTC
66 AAGCCAAGATTCGTCGTCTTTGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCTAAAATTTC
14212580 AA
131 AA
* * *
14212582 CCTACTCCACTACAACTTTAGGAAGCTAAGTTAATGACTTAAATCTGCTTCACTGCAACTTCAGG
1 CCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCTGCTTCACTGCAACTTCAGG
* * *
14212647 AAGCCAAGATTCGTCGTTTTTAATTTGCTCCACTGCAACTTCAGGGAAACAAGATCTAAAATTTC
66 AAGCCAAGATTCGTCGTCTTTGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCTAAAATTTC
14212712 AA
131 AA
*
14212714 CCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCTGCTTCACTGCAACTTCAGA
1 CCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCTGCTTCACTGCAACTTCAGG
* * * *
14212779 AAGTCAAGATTCGTCGCCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAGGATCT
66 AAGCCAAGATTCGTCGTCTTTGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCT
14212836 GTGGGATTCA
Statistics
Matches: 702, Mismatches: 78, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
132 598 0.85
133 102 0.15
134 2 0.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (132 bp):
CCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCTGCTTCACTGCAACTTCAGG
AAGCCAAGATTCGTCGTCTTTGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCTAAAATTTC
AA
Found at i:14212334 original size:44 final size:44
Alignment explanation
Indices: 14212278--14212737 Score: 163
Period size: 44 Copynumber: 10.5 Consensus size: 44
14212268 CTTTGATCTG
* *
14212278 CTCCACTGCAACTTCAGGGAAACGAGATCTAAAATTTCAACCTA
1 CTCCACTACAACTTCAGGGAAACAAGATCTAAAATTTCAACCTA
* * * * * * * * *
14212322 CTCCACTACAACTTTAGGG-AGCTAGGT-TAATGACTTAAATCTG
1 CTCCACTACAACTTCAGGGAAACAAGATCTAA-AATTTCAACCTA
* * * **** * * *
14212365 CTTCACTGCAACTTCA-GGAAGCCAAGATTCGTCGTCTTT-GATCTG
1 CTCCACTACAACTTCAGGGAA-ACAAGA-TC-TAAAATTTCAACCTA
14212410 CTCCACTACAACTTCAGGGAAACAAGATCTAAAATTTCAACCTA
1 CTCCACTACAACTTCAGGGAAACAAGATCTAAAATTTCAACCTA
* * * * * ** * * *
14212454 CTCCACTACAACTTTATGG-AGCTAGGT-TAGTGACTTAAATCTA
1 CTCCACTACAACTTCAGGGAAACAAGATCTA-AAATTTCAACCTA
* * * ** * * *
14212497 CTTCACTGCAACTTCA-GGAAGTCAAGAT-TCATCATCTTCGATCTG
1 CTCCACTACAACTTCAGGGAA-ACAAGATCT-AAAAT-TTCAACCTA
* * *
14212542 CTCCACTGCAACTTTAGGGAAACAGGATCTAAAATTTCAACCTA
1 CTCCACTACAACTTCAGGGAAACAAGATCTAAAATTTCAACCTA
* * * * * * *
14212586 CTCCACTACAACTTTA-GGAAGCTAAG-T-TAATGACTTAAATCTG
1 CTCCACTACAACTTCAGGGAAAC-AAGATCTAA-AATTTCAACCTA
* * * *** * ** *
14212629 CTTCACTGCAACTTCA-GGAAGCCAAGATTCGT-CGTTTTTAATTTG
1 CTCCACTACAACTTCAGGGAA-ACAAGA-TC-TAAAATTTCAACCTA
*
14212674 CTCCACTGCAACTTCAGGGAAACAAGATCTAAAATTTCAACCTA
1 CTCCACTACAACTTCAGGGAAACAAGATCTAAAATTTCAACCTA
*
14212718 CTCCACTACAACTTTAGGGA
1 CTCCACTACAACTTCAGGGA
14212738 GCTAGGTTAG
Statistics
Matches: 302, Mismatches: 90, Indels: 48
0.69 0.20 0.11
Matches are distributed among these distances:
42 12 0.04
43 91 0.30
44 99 0.33
45 83 0.27
46 15 0.05
47 2 0.01
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (44 bp):
CTCCACTACAACTTCAGGGAAACAAGATCTAAAATTTCAACCTA
Found at i:14212375 original size:87 final size:86
Alignment explanation
Indices: 14212273--14212646 Score: 247
Period size: 87 Copynumber: 4.3 Consensus size: 86
14212263 GTCGTCTTTG
*
14212273 ATCTGCTCCACTGCAACTTCAGGGAAACGAGATCTAAAATTTCAACCTACTCCACTACAACTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAAAC-AGATCTAAAATTTCAACCTACTCCACTACAACTTCA
* * *
14212338 GGGAGCTAGGTTAATGACTTAA
65 GGAAGCAAGATTAATGACTTAA
* * **** * * *
14212360 ATCTGCTTCACTGCAACTTCA-GGAAGCCAAGATTCGTCGTCTTT-GATCTGCTCCACTACAACT
1 ATCTGCTCCACTGCAACTTCAGGGAA-AC-AGA-TC-TAAAATTTCAACCTACTCCACTACAACT
* * * *
14212423 TCAGGGAAACAAGATCTAA-AATTTCA
62 TCA-GGAAGCAAGAT-TAATGACTTAA
* * * * * * * ** * * * * *
14212449 ACCTACTCCACTACAACTTTATGG-AGCTAGGT-TAGTGACTTAAATCTACTTCACTGCAACTTC
1 ATCTGCTCCACTGCAACTTCAGGGAAAC-AGATCTA-AAATTTCAACCTACTCCACTACAACTTC
* * **
14212512 AGGAAGTCAAGATTCATCATCTTCG
64 AGGAAG-CAAGATTAATGA-CTTAA
* *
14212537 ATCTGCTCCACTGCAACTTTAGGGAAACAGGATCTAAAATTTCAACCTACTCCACTACAACTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAAACA-GATCTAAAATTTCAACCTACTCCACTACAACTTCA
14212602 GGAAGCTAAG-TTAATGACTTAA
65 GGAAGC-AAGATTAATGACTTAA
*
14212624 ATCTGCTTCACTGCAACTTCAGG
1 ATCTGCTCCACTGCAACTTCAGG
14212647 AAGCCAAGAT
Statistics
Matches: 212, Mismatches: 60, Indels: 30
0.70 0.20 0.10
Matches are distributed among these distances:
85 1 0.00
86 12 0.06
87 74 0.35
88 53 0.25
89 65 0.31
90 7 0.03
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (86 bp):
ATCTGCTCCACTGCAACTTCAGGGAAACAGATCTAAAATTTCAACCTACTCCACTACAACTTCAG
GAAGCAAGATTAATGACTTAA
Found at i:14226196 original size:22 final size:20
Alignment explanation
Indices: 14226145--14226196 Score: 52
Period size: 22 Copynumber: 2.5 Consensus size: 20
14226135 TCCATGCAAC
14226145 CAAAAG-AAATATAAAGAAA
1 CAAAAGAAAATATAAAGAAA
* *
14226164 AAACAACAAAATGATAAAGAAGA
1 CAA-AAGAAAAT-ATAAAGAA-A
14226187 CAAAAGAAAA
1 CAAAAGAAAA
14226197 CGACTACACC
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
19 2 0.08
20 2 0.08
21 4 0.16
22 14 0.56
23 3 0.12
ACGTcount: A:0.73, C:0.08, G:0.12, T:0.08
Consensus pattern (20 bp):
CAAAAGAAAATATAAAGAAA
Found at i:14226637 original size:13 final size:13
Alignment explanation
Indices: 14226619--14226669 Score: 75
Period size: 13 Copynumber: 3.9 Consensus size: 13
14226609 ACGCACACTA
14226619 CTACCAGGCAACG
1 CTACCAGGCAACG
*
14226632 CTACCAGGCGACG
1 CTACCAGGCAACG
* *
14226645 CTACCAGGCGAGG
1 CTACCAGGCAACG
14226658 CTACCAGGCAAC
1 CTACCAGGCAAC
14226670 ATTCGTATGT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.27, C:0.37, G:0.27, T:0.08
Consensus pattern (13 bp):
CTACCAGGCAACG
Found at i:14226873 original size:43 final size:43
Alignment explanation
Indices: 14226737--14229047 Score: 2343
Period size: 43 Copynumber: 54.4 Consensus size: 43
14226727 GTGCCCCTAC
* * ** *
14226737 TGCCCGAGGCACCCGCAC-ATCCAACGTTCTAGGTTACCGATGG
1 TGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGG
* * ** * * *
14226780 TGTCCTAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGC
1 TGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGG
* * * * *
14226822 TGCTCGAGGCTCCCGCAC-ATCCGAGGCACCAAAG-TGCCGATGG
1 TGCCCGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGG
* *
14226865 TGCCCGAGGCTCCCGCACGACCAAAGGCCTACGTTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * ** * *
14226908 TGTCCGAGG-TGCCTGCAC-ATCCAAGCACCAAGG-TGTCGATGG
1 TGCCCGAGGCT-CCCGCACGA-CCAAGGGCCTAGGTTGCCGATGG
* * * * *
14226950 TGCCCGAGGCTCTCGCACAATCAA-GGCCTAGGTTACCGATAG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
*
14226992 TGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* ** * * * *
14227035 TGTCCGAGGCTTTCGTACAACCAGGGGCCTTGGTTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * ** *
14227078 TGTCCGAGGCTCCTGCAC-ATCCAAGCACCAAGG-TGCCGATGG
1 TGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGG
* *
14227120 T-CCTGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * *
14227162 TGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATAG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * * * *
14227205 TGCCCGAGGCTCTCGCACTACTAGGGGCCTAGGTTACCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
*
14227248 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCTATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
*
14227290 TACCCGAGGC-CCTCGCACGACCAAGGGCCTAGGTTGCCGATGG
1 TGCCCGAGGCTCC-CGCACGACCAAGGGCCTAGGTTGCCGATGG
* * * * * *
14227333 TGCCCGAGTCTCCCGTACGACTAGGGGCCTAAGTTACCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
*
14227376 TGCCCGAGGCTCCCTCACGACCAAGGGCCTAGGTTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * *
14227419 TGTCCGAGGCTCTCGCACGACCAAGGGCCTAGG-TGTCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* *
14227461 TGGCCGAGGCTCCCGCACGACCAATGGCCTAGG-TGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* ** * *
14227503 T-CCCGAGGTTCTTGCACGACCAAGGGCCTAGGTTGTCGATAG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * * *
14227545 TTCCCGAGGATCCAGCATGACC-AGAGGCCTAGGTTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAG-GGCCTAGGTTGCCGATGG
* ** * *
14227588 TGCCCGAGGCTCCCGCA-TATCCAAGCACCAAGG-TGCCAATGG
1 TGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGG
*
14227630 TGCCCCAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* *
14227672 TGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCTGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * * *
14227715 T-ACCGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATAG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* ** * * *
14227757 CG-CCGAGGCTCTTGCACAACCAGGGGCCTAGGTTACCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * * *
14227799 TGCCCGAGGCTCTCACATGACCAAGGGCCTAGGTTGCCGATTG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
** * * *
14227842 TGTTCGAGGCTCCCGCATGACCAAGGGCCTA-GCTGCCTATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
*
14227884 TGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
** * *
14227927 TGCCCGAGGCTTTCGCACGACCAGGGGCTTAGGTTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * *
14227970 TGCCCGAGGCTCCCGCACGACTAGGGGCCTAGGTTGCGGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * *
14228013 TGTCCGAGGCTCCCTCACGACCAAGGGCCTA-GTTGTCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* ** *
14228055 TGTCCGAGGCTCCTTCACGACCAAAGGCCTAGG-TGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * * *
14228097 TGGCTGAGGCTCCCACACGACCAAGGACCTAGG-TGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * * *
14228139 T-CCTGAGGCTCTCGCACGACCAAGAGCCTAGGTTGCTGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * * * *
14228181 TGCCTGAGGATCTCGTACGACCAGGGGCCTAGGTTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * *
14228224 TGCCCGAGGATCCCGCACGACTAGGGGCCTAGGTTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * *
14228267 TGCCCGAGGATCCCGCACGACCAGGGGCCTAGGTTGCCGATGC
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * ** *
14228310 TGCCCGAGGCTCCCACAC-ATTCAAGTACC-AGG-TGCCGATAG
1 TGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGG
* * * *
14228351 TGCCCGAGGCTCCCACACGACTAAGGGCCTACG-TGCCAATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* *
14228393 TGCCCGAGGCTTCCGCACGACCAAGGGCCTAGGTTGCTGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * * * *
14228436 T-ACCGAGGCTCTCGCACGATCAGGGGCCTAGGTTACCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * * *
14228478 TG-CCGAGGCTCCCGCATGGCCAGGGGCCTAGGTTGTCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * * *
14228520 TGCCCGAGGCTCCCGTAAGACTAGGGGCCTAGGTTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* *
14228563 TGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCTGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * *
14228606 TGCCCGAGGCTCCTGCACGACCAGGGGCCTAGGTTACCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* ** *
14228649 CGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGG
1 TGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGG
* * * *
14228691 TGCCGGAGGTTCCCGCACGACCAAGAGACTAGG-TGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * * *
14228733 CGCCTGAGGCTCCCGCACGACCAATGGCCTAGGTTTCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * *
14228776 T-CCTGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * *
14228818 TGCCCGAGGCTCCCGCACGA-CTAGGGTCTTAGGCTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGG-CCTAGGTTGCCGATGG
*
14228861 TGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGG
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
** * * *
14228904 TGCTTGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCAATGC
1 TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
* * ** * *
14228947 CG-CCGAGGCTCTCGCAC-ATCCAAGCACCAAGG-TGCCAATGG
1 TGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGG
* * ** * *
14228988 TCCCCGAGGCTTCCGCAC-ATCCAAGCACCAAGG-TGCCAATGG
1 TGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGG
* *
14229030 TCCCCGAGGCTCCTGCAC
1 TGCCCGAGGCTCCCGCAC
14229048 ATCCAAGCAC
Statistics
Matches: 1914, Mismatches: 311, Indels: 87
0.83 0.13 0.04
Matches are distributed among these distances:
41 120 0.06
42 772 0.40
43 1013 0.53
44 9 0.00
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.17
Consensus pattern (43 bp):
TGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
Found at i:14226933 original size:128 final size:127
Alignment explanation
Indices: 14226705--14229047 Score: 1746
Period size: 128 Copynumber: 18.4 Consensus size: 127
14226695 TTTTCTTTAG
* ** ** * * **
14226705 CCCGCACATCCGAGGCACCAGGGTGCCCCTACTGCCCGAGGCACCCGCAC-ATCCAACGTTCTAG
1 CCCGCACATCC-AGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAG
* * * ** * * * *
14226769 GTTACCGATGGTGTCCTAGGCTCCCGCACATCCAAGCACCAAGG-TGCCAATGCTGCTCGAGGCT
64 GTTGCCGATGGTGTCCGAGGCTCCTGCACA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* * *
14226833 CCCGCACATCCGAGGCACCAAAGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTACG
1 CCCGCACATCC-AGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
** * *
14226898 TTGCCGATGGTGTCCGAGG-TGCCTGCACATCCAAGCACCAAGG-TGTCGATGGTGCCCGAGGCT
65 TTGCCGATGGTGTCCGAGGCT-CCTGCACA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* * * * * *
14226961 CTCGCACAATCAAGG--CCTAGGTTACCGATAGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAG
1 CCCGCAC-ATCCAGGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * * * *
14227024 GTTGCCGATGGTGTCCGAGGCT-TTCGTACAACCAGGGGCCTTGGTTGCCGATGGTGTCCGAGGC
64 GTTGCCGATGGTGTCCGAGGCTCCT-GCAC-ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGC
14227088 T
127 T
* * * *
14227089 CCTGCACATCCAAGCACCAAGGTGCCGATGGT-CCTGAGGCTCTCGCACGACCAAGGGCCTAGGT
1 CCCGCACATCCAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
14227153 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTACCGATAGTGCCCGAGGCT
66 TGCCGATGGTGTCCGAGGCTCCTGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* * ** * *
14227216 CTCGCAC-TACTAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
1 CCCGCACAT-CCAGGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* ** *
14227280 G-TGCCTATGGTACCCGAGGC-CCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGTC
64 GTTGCCGATGGTGTCCGAGGCTCCT-GCAC-ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGC
14227343 T
127 T
* * ** * * *
14227344 CCCGTACGA-CTAGGGGCCTAAGTTACCGATGGTGCCCGAGGCTCCCTCACGACCAAGGGCCTAG
1 CCCGCAC-ATCCAGGCACC-AAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* *
14227408 GTTGCCGATGGTGTCCGAGGCT-CTCGCACGACCAAGGGCCTAGG-TGTCGATGGTGGCCGAGGC
64 GTTGCCGATGGTGTCCGAGGCTCCT-GCAC-ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGC
14227471 T
127 T
* * **
14227472 CCCGCACGA-CCAATGG--CCTAGGTGCCGATGGT-CCCGAGGTTCTTGCACGACCAAGGGCCTA
1 CCCGCAC-ATCC-A-GGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
* * * * *
14227533 GGTTGTCGATAGT-TCCCGAGGATCCAGCATGACC-AGAGGCCTAGGTTGCCGATGGTGCCCGAG
63 GGTTGCCGATGGTGT-CCGAGGCTCCTGCA-CACCAAG-GGCCTAGGTTGCCGATGGTGCCCGAG
14227596 GCT
125 GCT
* * * *
14227599 CCCGCATATCCAAGCACCAAGGTGCCAATGGTGCCCCAGGCTCCCGCACGACCAAGGGCCTAGG-
1 CCCGCACATCCAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
14227663 TGCCGATGGTGCCCGAGGCT-CTCGCACGACCAAGGGCCTAGGTTGCTGATGGT-ACCGAGGCT
66 TGCCGATGGTGTCCGAGGCTCCT-GCAC-ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* ** * * * ** * *
14227725 CTCGCACGA-CCAGGGGCCTAGGTTGCCGATAGCG-CCGAGGCTCTTGCACAACCAGGGGCCTAG
1 CCCGCAC-ATCCAGGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * * **
14227788 GTTACCGATGGTGCCCGAGGCT-CT-CACATGACCAAGGGCCTAGGTTGCCGATTGTGTTCGAGG
64 GTTGCCGATGGTGTCCGAGGCTCCTGCAC---ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGG
14227851 CT
126 CT
* * * * * *
14227853 CCCGCATGA-CCAAGG-GCCTAGCTGCCTATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAG
1 CCCGCA-CATCC-AGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * * *
14227916 GTTGCCGATGGTGCCCGAGGCT-TTCGCACGACCAGGGGCTTAGGTTGCCGATGGTGCCCGAGGC
64 GTTGCCGATGGTGTCCGAGGCTCCT-GCAC-ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGC
14227980 T
127 T
* ** * * * *
14227981 CCCGCACGA-CTAGGGGCCTAGGTTGCGGATGGTGTCCGAGGCTCCCTCACGACCAAGGGCCTA-
1 CCCGCAC-ATCCAGGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * * * *
14228044 GTTGTCGATGGTGTCCGAGGCTCCTTCACGACCAAAGGCCTAGG-TGCCGATGGTGGCTGAGGCT
64 GTTGCCGATGGTGTCCGAGGCTCCTGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* * * * *
14228108 CCCACACGA-CCAAGG-ACCTAGGTGCCGATGGT-CCTGAGGCTCTCGCACGACCAAGAGCCTAG
1 CCCGCAC-ATCC-AGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * * *
14228170 GTTGCTGATGGTG-CCTGAGGAT-CTCGTACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGG
64 GTTGCCGATGGTGTCC-GAGGCTCCT-GCAC-ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGG
*
14228233 AT
126 CT
* ** * * *
14228235 CCCGCACGA-CTAGGGGCCTAGGTTGCCGATGGTGCCCGAGGATCCCGCACGACCAGGGGCCTAG
1 CCCGCAC-ATCCAGGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * ** * ** *
14228299 GTTGCCGATGCTGCCCGAGGCTCCCACACATTCAAGTACC-AGG-TGCCGATAGTGCCCGAGGCT
64 GTTGCCGATGGTGTCCGAGGCTCCTGCACA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* * * * * * *
14228362 CCCACACGA-CTAAGG-GCCTACGTGCCAATGGTGCCCGAGGCTTCCGCACGACCAAGGGCCTAG
1 CCCGCAC-ATC-CAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* * * * *
14228425 GTTGCTGATGGT-ACCGAGGCT-CTCGCACGATCAGGGGCCTAGGTTACCGATGGTG-CCGAGGC
64 GTTGCCGATGGTGTCCGAGGCTCCT-GCAC-ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGC
14228487 T
127 T
*** ** * * * * * *
14228488 CCCGCATGGCCAGGGGCCTAGGTTGTCGATGGTGCCCGAGGCTCCCGTAAGACTAGGGGCCTAGG
1 CCCGCACATCCAGGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
* * * *
14228553 TTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCTGATGGTGCCCGAGGCT
65 TTGCCGATGGTGTCCGAGGCTCCTGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
* ** * * * ** *
14228617 CCTGCACGA-CCAGGGGCCTAGGTTACCGATGGCGCCCGAGGCTCCCGCAC-ATCCAAGCACCAA
1 CCCGCAC-ATCCAGGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTA
* * * * * *
14228680 GG-TGCCGATGGTG-CCGGAGGTTCCCGCACGACCAAGAGACTAGG-TGCCGATGGCGCCTGAGG
63 GGTTGCCGATGGTGTCC-GAGGCTCCTGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGG
14228742 CT
126 CT
* * * * *
14228744 CCCGCACGA-CCAATGG--CCTAGGTTTCCGATGGT-CCTGAGGCTCTCGCACGACCAGGGGCCT
1 CCCGCAC-ATCC-A-GGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* * * * *
14228805 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CTAGGGTCTTAGGCTGCCGATGGTGCCCGAG
62 AGGTTGCCGATGGTGTCCGAGGCTCCTGCAC-ACCAAGGG-CCTAGGTTGCCGATGGTGCCCGAG
14228869 GCT
125 GCT
** * ** *
14228872 CCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCTTGAGGCTCCCGCACGACCAGGGGCCTAG
1 CCCGCAC-ATCCAGGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
* ** ** * * *
14228936 GTTGCCAATGCCG-CCGAGGCT-CTCGCACATCCAAGCACCAAGG-TGCCAATGGTCCCCGAGGC
64 GTTGCCGATGGTGTCCGAGGCTCCT-GCACA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGC
14228998 T
127 T
* * * * *
14228999 TCCGCACATCCAAGCACCAAGGTGCCAATGGTCCCCGAGGCTCCTGCAC
1 CCCGCACATCCAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCAC
14229048 ATCCAAGCAC
Statistics
Matches: 1825, Mismatches: 301, Indels: 180
0.79 0.13 0.08
Matches are distributed among these distances:
124 1 0.00
125 55 0.03
126 279 0.15
127 588 0.32
128 627 0.34
129 267 0.15
130 8 0.00
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.17
Consensus pattern (127 bp):
CCCGCACATCCAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
TGCCGATGGTGTCCGAGGCTCCTGCACACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
Found at i:14227867 original size:594 final size:593
Alignment explanation
Indices: 14226859--14228964 Score: 2466
Period size: 594 Copynumber: 3.5 Consensus size: 593
14226849 ACCAAAGTGC
* * * *
14226859 CGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTACGTTGCCGATGGTGTCCGAGGTGCCTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTA-GGTGCCGATGGTGCCCGAGGTTCCCGC
* * * * * *
14226924 AC-ATCCAAGCACCAAGGTGTCGATGGTGCCCGAGGCTCTCGCACAATCAAGGCCTAGGTTACCG
65 ACGA-CCAAGGACCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGCCTAGGTTGCCG
* * ** *
14226988 ATAGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGTCCGAGGCTTTCGTAC
129 ATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC
* * * * * ** *
14227053 AACCAGGGGCCTTGGTTGCCGATGGTGTCCGAGGCTCCTGCAC-ATCCAAGCACCAAGG-TGCCG
194 GACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCG
* * * *
14227116 ATGGTCCTGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACG
258 ATGGTCC-GAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATAGCGCCCGAGGCTCCCGCACA
* * * *
14227181 ACCAGGGGCCTAGGTTACCGATAGTGCCCGAGGCTCTCGCACT-ACTAGGGGCCTAGGTTACCGA
322 ACCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCTCGCA-TGACCAAGGGCCTAGGTTGCCGA
* *
14227245 TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCTATGGTACCCGAGGCCCTCGCACGA
386 TTGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCTATGGT-CCCGAGGCCCTCGCACGA
* * *
14227310 CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGTCTCCCGTACGACTAGGGGCCTAAGTTACCGATG
450 CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACTAGGGGCCTAGGTTGCCGATG
* *
14227375 GTGCCCGAGGCTCCCTCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCTCGCACGAC
515 GTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGTCCGAGGCTC-CGCACGAC
14227440 CAAGGGCCTAGGTGT
579 CAAGGGCCTAGGTGT
* * **
14227455 CGATGGTGGCCGAGGCTCCCGCACGACCAATGGCCTAGGTGCCGATGGT-CCCGAGGTTCTTGCA
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGGTGCCGATGGTGCCCGAGGTTCCCGCA
* * * * * *
14227519 CGACCAAGGGCCTAGGTTGTCGATAGTTCCCGAGGATC-CAGCATGACCAGAGGCCTAGGTTGCC
66 CGACCAAGGACCTAGG-TGCCGATGGTGCCCGAGGCTCTC-GCACGACCA-AGGCCTAGGTTGCC
* * ** * * *
14227583 GATGGTGCCCGAGGCTCCCGCA-TATCCAAGCACCAAGG-TGCCAATGGTGCCCCAGGCTCCCGC
128 GATGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* *
14227646 ACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCT
192 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCC
* * **
14227710 GATGGTACCGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATAGCG-CCGAGGCTCTTGCAC
257 GATGGT-CCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATAGCGCCCGAGGCTCCCGCAC
*
14227774 AACCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCTCACATGACCAAGGGCCTAGGTTGCCGA
321 AACCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCTCGCATGACCAAGGGCCTAGGTTGCCGA
* * * *
14227839 TTGTGTTCGAGGCTCCCGCATGACCAAGGGCCTAGCTGCCTATGGTGCCCGAGGCTCTCGCACGA
386 TTGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCTATGGT-CCCGAGGCCCTCGCACGA
** * * *
14227904 CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTTTCGCACGACCAGGGGCTTAGGTTGCCGATG
450 CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACTAGGGGCCTAGGTTGCCGATG
* * *
14227969 GTGCCCGAGGCTCCCGCACGACTAGGGGCCTAGGTTGCGGATGGTGTCCGAGGCTCCCTCACGAC
515 GTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGTCCGAGGCT-CCGCACGAC
*
14228034 CAAGGGCCTAGTTGT
579 CAAGGGCCTAGGTGT
* ** * * * *
14228049 CGATGGTGTCCGAGGCTCCTTCACGACCAAAGGCCTAGGTGCCGATGGTGGCTGAGGCTCCCACA
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGGTGCCGATGGTGCCCGAGGTTCCCGCA
* *
14228114 CGACCAAGGACCTAGGTGCCGATGGT-CCTGAGGCTCTCGCACGACCAAGAGCCTAGGTTGCTGA
66 CGACCAAGGACCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAG-GCCTAGGTTGCCGA
* * * * *
14228178 TGGTGCCTGAGGATCTCGTACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGATCCCGCACG
130 TGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACG
* * * *
14228243 ACTAGGGGCCTAGGTTGCCGATGGTGCCCGAGGATCCCGCACGACCAGGGGCCTAGGTTGCCGAT
195 ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGAT
* * * ** * * *
14228308 GCTGCCCGAGGCTCCCACAC-ATTCAAGTACC-AGG-TGCCGATAGTGCCCGAGGCTCCCACACG
260 G--GTCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATAGCGCCCGAGGCTCCCGCACA
* * * * * * *
14228370 ACTAAGGGCCTACG-TGCCAATGGTGCCCGAGGCT-TCCGCACGACCAAGGGCCTAGGTTGCTGA
322 ACCAGGGGCCTAGGTTACCGATGGTGCCCGAGGCTCT-CGCATGACCAAGGGCCTAGGTTGCCGA
* * * * * * *
14228433 -TG-GTACCGAGGCTCTCGCACGATCAGGGGCCTAGGTTACCGATGGTGCCGAGGCTCC-CGCAT
386 TTGTGT-CCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCTATGGTCCCGAGGC-CCTCGCAC
* * * *
14228495 GGCCAGGGGCCTAGGTTGTCGATGGTGCCCGAGGCTCCCGTAAGACTAGGGGCCTAGGTTGCCGA
448 GACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACTAGGGGCCTAGGTTGCCGA
* *
14228560 TGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCTGATGGTGCCCGAGGCTCCTGCACG
513 TGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCC-GCACG
*
14228625 ACCAGGGGCCTAGGT-T
577 ACCAAGGGCCTAGGTGT
* * * *
14228641 ACCGATGGCGCCCGAGGCTCCCGCAC-ATCC-AAGCACCAAGGTGCCGATGGTGCCGGAGGTTCC
1 --CGATGGTGCCCGAGGCTCCCGCACGA-CCAAAG-GCCTAGGTGCCGATGGTGCCCGAGGTTCC
* * *
14228704 CGCACGACCAAGAGA-CTAGGTGCCGATGGCGCCTGAGGCTCCCGCACGACCAATGGCCTAGGTT
62 CGCACGACCAAG-GACCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAA-GGCCTAGGTT
* * *
14228768 TCCGATGGT-CCTGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
125 GCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * * *
14228832 GCACGA-CTAGGGTCTTAGGCTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTT
190 GCACGACCAAGGG-CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* * * *
14228896 GCCGATGGTGCTTGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCAAT-GC-CGCCGAGGCTCT
254 GCCGATGGT-C-CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATAGCGC-CCGAGGCTCC
14228959 CGCACA
316 CGCACA
14228965 TCCAAGCACC
Statistics
Matches: 1285, Mismatches: 186, Indels: 79
0.83 0.12 0.05
Matches are distributed among these distances:
592 8 0.01
593 228 0.18
594 670 0.52
595 273 0.21
596 105 0.08
597 1 0.00
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.17
Consensus pattern (593 bp):
CGATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGGTGCCGATGGTGCCCGAGGTTCCCGCA
CGACCAAGGACCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGCCTAGGTTGCCGAT
GGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA
CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATG
GTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATAGCGCCCGAGGCTCCCGCACAACCA
GGGGCCTAGGTTACCGATGGTGCCCGAGGCTCTCGCATGACCAAGGGCCTAGGTTGCCGATTGTG
TCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCTATGGTCCCGAGGCCCTCGCACGACCAAGG
GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACTAGGGGCCTAGGTTGCCGATGGTGCCC
GAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCGCACGACCAAGGGC
CTAGGTGT
Found at i:14229048 original size:42 final size:42
Alignment explanation
Indices: 14228949--14229064 Score: 200
Period size: 42 Copynumber: 2.8 Consensus size: 42
14228939 GCCAATGCCG
14228949 CCGAGGCT-CTCGCACATCCAAGCACCAAGGTGCCAATGGTCC
1 CCGAGGCTCCT-GCACATCCAAGCACCAAGGTGCCAATGGTCC
14228991 CCGAGGCTTCC-GCACATCCAAGCACCAAGGTGCCAATGGTCC
1 CCGAGGC-TCCTGCACATCCAAGCACCAAGGTGCCAATGGTCC
14229033 CCGAGGCTCCTGCACATCCAAGCACCAAGGTG
1 CCGAGGCTCCTGCACATCCAAGCACCAAGGTG
14229065 TCGATGCTGC
Statistics
Matches: 71, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
41 3 0.04
42 66 0.93
43 1 0.01
44 1 0.01
ACGTcount: A:0.24, C:0.38, G:0.24, T:0.14
Consensus pattern (42 bp):
CCGAGGCTCCTGCACATCCAAGCACCAAGGTGCCAATGGTCC
Found at i:14229142 original size:43 final size:43
Alignment explanation
Indices: 14229094--14229263 Score: 132
Period size: 43 Copynumber: 4.0 Consensus size: 43
14229084 TGGCCTAGTT
*
14229094 TGCCGGTGGTGTCCAAATCTCCCGCACAT-TCGAGGCACCAAGC
1 TGCCGGTGGTGTCCAAAGCTCCCGCACATCT-GAGGCACCAAGC
* * *
14229137 TGCCGGTGGTGTCCGAAGCTCTCGCACATCTGAGGCACCAAGT
1 TGCCGGTGGTGTCCAAAGCTCCCGCACATCTGAGGCACCAAGC
* * ** * * * *
14229180 TACCGATACTG-CTCGAGGCTCCCGCACATCCGAGGCACCAAGT
1 TGCCGGTGGTGTC-CAAAGCTCCCGCACATCTGAGGCACCAAGC
* ** * *
14229223 TACCGGTACTG-CTCGAGGCTCCCGCACATCTGA-GCACCAAG
1 TGCCGGTGGTGTC-CAAAGCTCCCGCACATCTGAGGCACCAAG
14229264 GTACCGATGC
Statistics
Matches: 112, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
42 9 0.08
43 102 0.91
44 1 0.01
ACGTcount: A:0.21, C:0.35, G:0.26, T:0.18
Consensus pattern (43 bp):
TGCCGGTGGTGTCCAAAGCTCCCGCACATCTGAGGCACCAAGC
Found at i:14229291 original size:42 final size:43
Alignment explanation
Indices: 14229154--14229284 Score: 210
Period size: 43 Copynumber: 3.1 Consensus size: 43
14229144 GGTGTCCGAA
*
14229154 GCTCTCGCACATCTGAGGCACCAAGTTACCGATACTGCTCGAG
1 GCTCCCGCACATCTGAGGCACCAAGTTACCGATACTGCTCGAG
* *
14229197 GCTCCCGCACATCCGAGGCACCAAGTTACCGGTACTGCTCGAG
1 GCTCCCGCACATCTGAGGCACCAAGTTACCGATACTGCTCGAG
* *
14229240 GCTCCCGCACATCTGA-GCACCAAGGTACCGATGCTGCTCGAG
1 GCTCCCGCACATCTGAGGCACCAAGTTACCGATACTGCTCGAG
14229282 GCT
1 GCT
14229285 TTCGCACCAT
Statistics
Matches: 81, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
42 26 0.32
43 55 0.68
ACGTcount: A:0.21, C:0.35, G:0.25, T:0.18
Consensus pattern (43 bp):
GCTCCCGCACATCTGAGGCACCAAGTTACCGATACTGCTCGAG
Found at i:14229564 original size:23 final size:23
Alignment explanation
Indices: 14229529--14229601 Score: 119
Period size: 23 Copynumber: 3.1 Consensus size: 23
14229519 TGTGATATTT
14229529 CGGGATGGCTCGCCGGAGCACCGC
1 CGGG-TGGCTCGCCGGAGCACCGC
*
14229553 CTGGTGGCTCGCCGGAGCACCGC
1 CGGGTGGCTCGCCGGAGCACCGC
*
14229576 CGGGTGGCTCGCCAGAGCACCGC
1 CGGGTGGCTCGCCGGAGCACCGC
14229599 CGG
1 CGG
14229602 AATGGATCGC
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
23 43 0.93
24 3 0.07
ACGTcount: A:0.11, C:0.38, G:0.41, T:0.10
Consensus pattern (23 bp):
CGGGTGGCTCGCCGGAGCACCGC
Found at i:14230105 original size:58 final size:59
Alignment explanation
Indices: 14230031--14230151 Score: 154
Period size: 58 Copynumber: 2.1 Consensus size: 59
14230021 GGGAGGGACA
* * * * *
14230031 GGGATGATTTATTCATTGTTGGGTACCGGACATACAACAGTATCTGAATCCTACC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATACAACAGTATCCGAATCCTACCTTTT
** * *
14230089 GGGACGATTCATTCATTATTGGGTACCGAACATGTAACGGTATCCGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATACAACAGTATCCGAATCCTACCTTTT
14230148 GGGA
1 GGGA
14230152 TTGGGGAGGG
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
58 46 0.87
59 7 0.13
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATACAACAGTATCCGAATCCTACCTTTT
Found at i:14233162 original size:46 final size:46
Alignment explanation
Indices: 14233110--14233429 Score: 489
Period size: 46 Copynumber: 7.0 Consensus size: 46
14233100 AGTGTGCTCT
*
14233110 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
14233156 CTGATATGAAATATGTAAGACCATAGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
14233202 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
14233248 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
14233294 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ***
14233340 GTGTTATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
14233386 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
14233430 TCATGTCAAA
Statistics
Matches: 253, Mismatches: 20, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 1 0.00
46 252 1.00
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:14234385 original size:5 final size:5
Alignment explanation
Indices: 14234375--14234400 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
14234365 TACAAGAAGT
14234375 ATGGC ATGGC ATGGC ATGGC ATGGC A
1 ATGGC ATGGC ATGGC ATGGC ATGGC A
14234401 CGACACTGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.38, T:0.19
Consensus pattern (5 bp):
ATGGC
Found at i:14234506 original size:187 final size:187
Alignment explanation
Indices: 14234184--14234521 Score: 570
Period size: 187 Copynumber: 1.8 Consensus size: 187
14234174 AAGCCAAATA
*
14234184 AAGTATGGCATGGCATGGCATGGAACGGCACGGCACAGCAAAAAATTGAACAACTGCCCGGACCG
1 AAGTATGGCATGGCATGGCATGGAACGGCACGACACAGCAAAAAATTGAACAACTGCCCGGACCG
*
14234249 CCAACAGTTGCGAGCTCGCACCCGCACCACCACAGCCCCTGTTGTGCCATGTTTCCCGAGGGGGC
66 CCAACAGTTGCGAGCTCGCACCCGCACCACCACAGCCCCTGTTGTGCCATGTTTCCCGAGGGGAC
14234314 GGCACGGCCAAGTGTTTAACTTAGAAATTTTTTCTGTTGGCCCGAAACAAATACAAG
131 GGCACGGCCAAGTGTTTAACTTAGAAATTTTTTCTGTTGGCCCGAAACAAATACAAG
* * * * * *
14234371 AAGTATGGCATGGCATGGCATGGCATGGCACGACACTGTAAAAAATTGAACAAGTGCCCGGACTG
1 AAGTATGGCATGGCATGGCATGGAACGGCACGACACAGCAAAAAATTGAACAACTGCCCGGACCG
* *
14234436 CCAACAGTTGGGAGCTCGCACCCGCACCACCACGGCCTCC-GTTGTGCCATGTTTCCCGAGGGGA
66 CCAACAGTTGCGAGCTCGCACCCGCACCACCACAGCC-CCTGTTGTGCCATGTTTCCCGAGGGGA
14234500 CGGCACGGCCAAGTGTTTAACT
130 CGGCACGGCCAAGTGTTTAACT
14234522 AACTCCTTAC
Statistics
Matches: 140, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
187 138 0.99
188 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.27, T:0.19
Consensus pattern (187 bp):
AAGTATGGCATGGCATGGCATGGAACGGCACGACACAGCAAAAAATTGAACAACTGCCCGGACCG
CCAACAGTTGCGAGCTCGCACCCGCACCACCACAGCCCCTGTTGTGCCATGTTTCCCGAGGGGAC
GGCACGGCCAAGTGTTTAACTTAGAAATTTTTTCTGTTGGCCCGAAACAAATACAAG
Found at i:14244884 original size:42 final size:42
Alignment explanation
Indices: 14244837--14246402 Score: 401
Period size: 43 Copynumber: 37.0 Consensus size: 42
14244827 ATGGTGTCCA
* * *
14244837 AGGCTCCCGCACATCCAAGTACCAAGGTGCCAATGCTGCTCG
1 AGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCG
** * * *
14244879 AGGCTCCCGCACATCTGAGACACCGAGGTGCCGGTGGTGCCCG
1 AGGCTCCCGCACATCCAAG-CACCAAGGTGCCGATGGTGCTCG
* * * *
14244922 AGGCTCCCGCACGA-CCAAGGGACTACGTTGCCGATGGTG-TCTG
1 AGGCTCCCGCAC-ATCCAA-GCACCAAGGTGCCGATGGTGCTC-G
* * *
14244965 AGGCTCCCGCATATCCAAGCACCAAGGTGCCGATGGTACCCG
1 AGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCG
* * * *
14245007 AGGCTCTCGCACGAT-CAAG-GCCTAGGTTACCGATGGTGCTCG
1 AGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTCG
** * * *
14245049 AGGCTCCCGCACGA-CCAGAG-GTCTAGGATGTCGATGGTGCCCG
1 AGGCTCCCGCAC-ATCCA-AGCACCAAGG-TGCCGATGGTGCTCG
* * ** * *
14245092 AGCCTCCCGCACGA-CCAGGGGCCTAAGTTGCCGATAGTG-TCCG
1 AGGCTCCCGCAC-ATCCAAGCACC-AAGGTGCCGATGGTGCT-CG
* * *
14245135 AGGCTCCCGCAAATCCAAGCACCAAGGTGTCGATGGT-CCCG
1 AGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCG
* ** ** * *
14245176 AGGCACTTGCACGA-CCAAGGGCCTAGGCTGCCGATGGTGCCCG
1 AGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTCG
* * * ** * *
14245219 AAGCTCCTGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCGCG
1 AGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTCG
* ** * *
14245262 AGGCTCCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCCG
1 AGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTCG
* * * ** * *
14245305 AGGCTCCTGCCCAACCAAGGGCCTAGGTTGCCGATGGTGCCCG
1 AGGCTCCCGCACATCCAAGCACCAAGG-TGCCGATGGTGCTCG
* ** * * *
14245348 AGGCTCCCGCACAACCAAGGGCCTAGGTGTCGATGGTGCCCG
1 AGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCG
* * * ** * * **
14245390 AGGCTCTCGCATGA-CCAGGGGCCTAGTTTTTCGATGGTGC-CG
1 AGGCTCCCGCA-CATCCAAGCACCAAG-GTGCCGATGGTGCTCG
* * * ** * *
14245432 AGGTTTCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCCG
1 AGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTCG
* * ** * *
14245475 AGGCTCCCGCACGA-CTAGGGGCCTAGGTTGCTGATGGTG-TCCG
1 AGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCT-CG
* * ** * *
14245518 AGGCTCCCTCACGA-CTAAGGGCC---TTGCCGATGGTGTTCG
1 AGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCTCG
** *
14245557 AGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGGC-CG
1 AGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCGATGGT-GCTCG
* * * *
14245599 AGACTCCCGCACGA-CCAAAG-GCCTAGGTGCCGATGGT-CCCG
1 AGGCTCCCGCAC-ATCC-AAGCACCAAGGTGCCGATGGTGCTCG
* * ** * * *
14245640 AGGCTCTCGCA-AGACCAAGGGCCTAGGTTGCCGATGGTGCCCA
1 AGGCTCCCGCACA-TCCAAGCACCAAGG-TGCCGATGGTGCTCG
* * ** * * *
14245683 AGGATCCCGCACGA-CCAGGGGCCTAGGTTGTCGATGGTGCCCG
1 AGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTCG
* *
14245726 AGGCTCCCGCACATCCAAGCACCAAGGTGTCGATGGTGCCCG
1 AGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCG
** * *
14245768 AGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCG
1 AGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCTCG
* * * ** * * * *
14245810 AGGTTCTCACACGA-CCAAGGGTCTAAGTTGTCGATGGTAC-CG
1 AGGCTCCCGCAC-ATCCAA-GCACCAAGGTGCCGATGGTGCTCG
** * * * ** * * *
14245852 AGGCTTTCGTATGA-CCAGGGGCCTAGTTTGTCGATGGTGC-CG
1 AGGCTCCCGCA-CATCCAAGCACCAAG-GTGCCGATGGTGCTCG
* * * * * * * *
14245894 AGGTTTCTGCACGA-CCAGAG-GCCTAGGTTACCGATGTTGCCCG
1 AGGCTCCCGCAC-ATCCA-AGCACCAAGG-TGCCGATGGTGCTCG
* ** * *
14245937 AGGCTCCCGCACGAT-CAGGGGCCTAGGTTGCCGATGGTGCCCG
1 AGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTCG
** *
14245980 AGGCTCCCGCACGA-CCAA-CGGTCTAGGTTGCCGATGGTGC-CTG
1 AGGCTCCCGCAC-ATCCAAGC-ACCAAGG-TGCCGATGGTGCTC-G
* *
14246023 GGGCTTCCGCACATCCAAGCACCAAGGTGCCGATGGTGC-CAG
1 AGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTC-G
* * * * * *
14246065 AGGATCCCACACGA-CCAAAG-AGCTAGGTGCCGATGTTGCCCG
1 AGGCTCCCGCAC-ATCC-AAGCACCAAGGTGCCGATGGTGCTCG
* * *
14246107 AGGCTCCCGCACGA-CCAATG-GCCTAGGTTGCCGATGGT-CCCG
1 AGGCTCCCGCAC-ATCCAA-GCACCAAGG-TGCCGATGGTGCTCG
* * *** * *
14246149 AGGCTCCCGCACGA-CTAGGGGTCTAGGTTGCAGATGGTGC-CTG
1 AGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTC-G
* * ** ** *
14246192 AGGCTACCGCACGA-CCAGGGGCGTAGGTTGCCGATGGTGCCCG
1 AGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTCG
* ** *
14246235 AGGCTCCCGCACGA-CCAGGGGCCTAGGCTGCCGATGGTGCTCG
1 AGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTCG
** * *
14246278 AGGCTCCCGCACGA-CCAAG-GGCATAGGTTGCCGATGGCGC-CA
1 AGGCTCCCGCAC-ATCCAAGCACCA-AGG-TGCCGATGGTGCTCG
* * * * * * *
14246320 AGGCTCTCGCATATCCAAGCACCAATGTGCCAATGATCCCCG
1 AGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCG
* * *
14246362 AGGCTTCCGTACATCCAAGCACCAAGGTGCCGATGCTGCTC
1 AGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTC
14246403 CGACCAATGG
Statistics
Matches: 1242, Mismatches: 214, Indels: 136
0.78 0.13 0.09
Matches are distributed among these distances:
39 34 0.03
40 5 0.00
41 62 0.05
42 496 0.40
43 638 0.51
44 6 0.00
45 1 0.00
ACGTcount: A:0.19, C:0.32, G:0.33, T:0.17
Consensus pattern (42 bp):
AGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCG
Found at i:14244940 original size:85 final size:83
Alignment explanation
Indices: 14244826--14246402 Score: 698
Period size: 85 Copynumber: 18.6 Consensus size: 83
14244816 CCAGGTTGCA
* * * *
14244826 GATGGTGTCCAAGGCTCCCGCAC-ATCCAAGTACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCA
1 GATGGTGCCCGAGGCTCCCGCACGA-CCAAG-ACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCA
** *
14244890 CATCTGAGACACCGAGGTGCC
64 CATCCAAG-CACCAAGGTGCC
* * * *
14244911 GGTGGTGCCCGAGGCTCCCGCACGACCAAGGGACTACGTTGCCGATGGTG-TCTGAGGCTCCCGC
1 GATGGTGCCCGAGGCTCCCGCACGACCAA--GACCAAGGTGCCGATGGTGCTC-GAGGCTCCCGC
*
14244975 ATATCCAAGCACCAAGGTGCC
63 ACATCCAAGCACCAAGGTGCC
* * * * * *
14244996 GATGGTACCCGAGGCTCTCGCACGATCAAGGCCTAGGTTACCGATGGTGCTCGAGGCTCCCGCAC
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGACCAAGG-TGCCGATGGTGCTCGAGGCTCCCGCAC
** * *
14245061 GA-CCAGAG-GTCTAGGATGTC
65 -ATCCA-AGCACCAAGG-TGCC
* * * * *
14245081 GATGGTGCCCGAGCCTCCCGCACGACCAGGGGCCTAAGTTGCCGATAGTG-TCCGAGGCTCCCGC
1 GATGGTGCCCGAGGCTCCCGCACGACCA-AGACC-AAGGTGCCGATGGTGCT-CGAGGCTCCCGC
* *
14245145 AAATCCAAGCACCAAGGTGTC
63 ACATCCAAGCACCAAGGTGCC
* ** * * * * *
14245166 GATGGT-CCCGAGGCACTTGCACGACCAAGGGCCTAGGCTGCCGATGGTGCCCGAAGCTCCTGCA
1 GATGGTGCCCGAGGCTCCCGCACGACCAA-GACCAAGG-TGCCGATGGTGCTCGAGGCTCCCGCA
* ** *
14245230 CGA-CCAGGGGCCTAGGTTGCC
64 C-ATCCAAGCACCAAGG-TGCC
* * * * * * *
14245251 GATGGTGCGCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTGCC
1 GATGGTGCCCGAGGCTCCCGCACGACCA-AGACCAAGG-TGCCGATGGTGCTCGAGGCTCCCGCA
* ** *
14245316 CAACCAAGGGCCTAGGTTGCC
64 CATCCAAGCACCAAGG-TGCC
* * * * * *
14245337 GATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGGTGTCGATGGTGCCCGAGGCTCTCGCAT
1 GATGGTGCCCGAGGCTCCCGCACGACCAA-GACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCA-
* * ** * * **
14245402 GA-CCAGGGGCCTAGTTTTTC
64 CATCCAAGCACCAAG-GTGCC
* * * * * *
14245422 GATGGTG-CCGAGGTTTCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA
1 GATGGTGCCCGAGGCTCCCGCACGACCA-AGACCAAGG-TGCCGATGGTGCTCGAGGCTCCCGCA
* * ** * *
14245486 CGA-CTAGGGGCCTAGGTTGCT
64 C-ATCCAAGCACCAAGG-TGCC
* * * * * *
14245507 GATGGTGTCCGAGGCTCCCTCACGACTAAGGGCC---TTGCCGATGGTGTTCGAGGCTCCCGCAC
1 GATGGTGCCCGAGGCTCCCGCACGACCAA-GACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCAC
** *
14245569 GA-CCAAGGGCCTAGGTGCC
65 -ATCCAAGCACCAAGGTGCC
* * * * * *
14245588 GATGGTGGCCGAGACTCCCGCACGACCAAAGGCCTAGGTGCCGATGGT-CCCGAGGCTCTCGCA-
1 GATGGTGCCCGAGGCTCCCGCACGACC-AAGACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCAC
* ** *
14245651 AGACCAAGGGCCTAGGTTGCC
65 A-TCCAAGCACCAAGG-TGCC
* * * * * * *
14245672 GATGGTGCCCAAGGATCCCGCACGACCAGGGGCCTAGGTTGTCGATGGTGCCCGAGGCTCCCGCA
1 GATGGTGCCCGAGGCTCCCGCACGACCA-AGACCAAGG-TGCCGATGGTGCTCGAGGCTCCCGCA
*
14245737 CATCCAAGCACCAAGGTGTC
64 CATCCAAGCACCAAGGTGCC
* * * * * *
14245757 GATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGTTCTCACAC
1 GATGGTGCCCGAGGCTCCCGCACGACCAA-GACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCAC
** * * *
14245822 GA-CCAAGGGTCTAAGTTGTC
65 -ATCCAA-GCACCAAGGTGCC
* ** * * * * * * * * * *
14245842 GATGGT-ACCGAGGCTTTCGTATGACCAGGGGCCTAGTTTGTCGATGGTGC-CGAGGTTTCTGCA
1 GATGGTGCCCGAGGCTCCCGCACGACCA-AGACCAAG-GTGCCGATGGTGCTCGAGGCTCCCGCA
* * *
14245905 CGA-CCAGAG-GCCTAGGTTACC
64 C-ATCCA-AGCACCAAGG-TGCC
* * * * * *
14245926 GATGTTGCCCGAGGCTCCCGCACGATCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA
1 GATGGTGCCCGAGGCTCCCGCACGACCA-AGACCAAGG-TGCCGATGGTGCTCGAGGCTCCCGCA
** *
14245991 CGA-CCAA-CGGTCTAGGTTGCC
64 C-ATCCAAGC-ACCAAGG-TGCC
* * * * *
14246012 GATGGTGCCTGGGGCTTCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGC-CAGAGGATCCCAC
1 GATGGTGCCCGAGGCTCCCGCACGA-CCAAG-ACCAAGGTGCCGATGGTGCTC-GAGGCTCCCGC
* *
14246075 ACGA-CCAAAG-AGCTAGGTGCC
63 AC-ATCC-AAGCACCAAGGTGCC
* * * *
14246096 GATGTTGCCCGAGGCTCCCGCACGACCAATGGCCTAGGTTGCCGATGGT-CCCGAGGCTCCCGCA
1 GATGGTGCCCGAGGCTCCCGCACGACCAA-GACCAAGG-TGCCGATGGTGCTCGAGGCTCCCGCA
* * *** * *
14246160 CGA-CTAGGGGTCTAGGTTGCA
64 C-ATCCAAGCACCAAGG-TGCC
* * * * ** *
14246181 GATGGTGCCTGAGGCTACCGCACGACCAGGGGCGTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA
1 GATGGTGCCCGAGGCTCCCGCACGACCA-AGACCAAGG-TGCCGATGGTGCTCGAGGCTCCCGCA
* ** *
14246246 CGA-CCAGGGGCCTAGGCTGCC
64 C-ATCCAAGCACCAAGG-TGCC
* ** * * *
14246267 GATGGTGCTCGAGGCTCCCGCACGACCAAGGGCATAGGTTGCCGATGGCGC-CAAGGCTCTCGCA
1 GATGGTGCCCGAGGCTCCCGCACGACCAAGACCA-AGG-TGCCGATGGTGCTCGAGGCTCCCGCA
* *
14246331 TATCCAAGCACCAATGTGCC
64 CATCCAAGCACCAAGGTGCC
* * * * * *
14246351 AATGATCCCCGAGGCTTCCGTAC-ATCCAAGCACCAAGGTGCCGATGCTGCTC
1 GATGGTGCCCGAGGCTCCCGCACGA-CCAAG-ACCAAGGTGCCGATGGTGCTC
14246403 CGACCAATGG
Statistics
Matches: 1196, Mismatches: 224, Indels: 145
0.76 0.14 0.09
Matches are distributed among these distances:
81 31 0.03
82 40 0.03
83 47 0.04
84 307 0.26
85 431 0.36
86 336 0.28
87 4 0.00
ACGTcount: A:0.19, C:0.32, G:0.33, T:0.17
Consensus pattern (83 bp):
GATGGTGCCCGAGGCTCCCGCACGACCAAGACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACA
TCCAAGCACCAAGGTGCC
Found at i:14244989 original size:128 final size:127
Alignment explanation
Indices: 14244820--14245847 Score: 371
Period size: 127 Copynumber: 8.1 Consensus size: 127
14244810 AATGTCCCAG
* * *
14244820 GTTGCAGATGGTGTCCAAGGCTCCCGCACATCCAAGTACCAAGGTGCCAATGCTGCTCGAGGCTC
1 GTTGCAGATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTACCCGAGGCTC
* *
14244885 CCGCAC-ATCTGAGACACCGAGG-TGCCGGTGGTGCCCGAGGCTCCCGCACGACCAAGGGACTAC
66 CCGCACGATC--A-ACACCGAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGACTAC
* ** * * *
14244948 GTTGCCGATGGTGTCTGAGGCTCCCGCATATCCAAGCACCAAGGTGCCGATGGTACCCGAGGCTC
1 GTTGCAGATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTACCCGAGGCTC
* ** * * * *
14245013 TCGCACGATCAAGGCCTAGGTTACCGATGGTGCTCGAGGCTCCCGCACGACC-AGAGGTCTAG
66 CCGCACGATCAACACCGAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAG-GGACTAC
* * * * * ** * * **
14245075 GATGTC-GATGGTGCCCGAGCCTCCCGCACGA-CCAGGGGCCTAAGTTGCCGATAG-TGTCCGAG
1 GTTG-CAGATGGTGTCCAAGGCTCCCGCAC-ATCCAAGCACC-AAGGTGCCAAT-GCTACCCGAG
* * * ** *
14245137 GCTCCCGCA-AATCCAAGCACCAAGGTGT--CGATGGT-CCCGAGGCACTTGCACGACCAAGGGC
62 GCTCCCGCACGAT-CAA-CACCGAGGT-TACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGA
*
14245198 CTAG
124 CTAC
* * * * * ** * * * * *
14245202 GCTGCCGATGGTGCCCGAA-GCTCCTGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCGCGAGG
1 GTTGCAGATGGTGTCC-AAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTACCCGAGG
* *** * * * * * *
14245265 CTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTGCCCAACCAAGGGCCTA
63 CTCCCGCACGATCA-ACACCGAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGACTA
*
14245330 G
127 C
* * * * ** * * * * *
14245331 GTTGCCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCTAGGTGTCGATGGTGCCCGAGGCTC
1 GTTGCAGATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTACCCGAGGCTC
* * * *** * * ** * * * * *
14245396 TCGCATGACCAGGGGCCTAGTTTTTCGATGGTG-CCGAGGTTTCCGCACGACCAGGGGCCTAG
66 CCGCACGATCA-ACACCGAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGACTAC
* * * * * ** * ** * **
14245458 GTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CTAGGGGCCTAGGTTGCTGATGGTGTCCGAGGC
1 GTTGCAGATGGTGTCCAAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTACCCGAGGC
* * * ** *
14245522 TCCCTCACGA-CTA-A--G-GGCCTTGCCGATGGTGTTCGAGGCTCCCGCACGACCAAGGGCCTA
64 TCCCGCACGATCAACACCGAGG--TTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGACTA
14245582 -
127 C
* * * * * * * * *
14245582 GGTGCCGATGGTGGCCGAGACTCCCGCACGA-CCAAAG-GCCTAGGTGCCGATGGT-CCCGAGGC
1 GTTGCAGATGGTGTCCAAGGCTCCCGCAC-ATCC-AAGCACCAAGGTGCCAATGCTACCCGAGGC
* * * ** * * * * * * *
14245644 TCTCGCAAGACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGGATCCCGCACGACCAGGGGCCTAG
64 TCCCGCACGATCAA-CACCGAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGACTAC
* * * * * *
14245709 GTTGTC-GATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGTCGATGGTGCCCGAGGCT
1 GTTG-CAGATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTACCCGAGGCT
* ** * * * * * * *
14245773 CCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGTTCTCACACGACCAAGGGTCTAA
65 CCCGCACGATCAA-CACCGAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGACTAC
14245836 GTTGTC-GATGGT
1 GTTG-CAGATGGT
14245848 ACCGAGGCTT
Statistics
Matches: 735, Mismatches: 126, Indels: 79
0.78 0.13 0.08
Matches are distributed among these distances:
122 15 0.02
123 11 0.01
124 46 0.06
125 26 0.04
126 53 0.07
127 298 0.41
128 213 0.29
129 72 0.10
130 1 0.00
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.17
Consensus pattern (127 bp):
GTTGCAGATGGTGTCCAAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTACCCGAGGCTC
CCGCACGATCAACACCGAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGACTAC
Found at i:14245155 original size:170 final size:169
Alignment explanation
Indices: 14244904--14246314 Score: 1421
Period size: 170 Copynumber: 8.3 Consensus size: 169
14244894 TGAGACACCG
* * * * *
14244904 AGGTGCCGGTGGTGCCCGAGGCTCCCGCACGACCAAGGGACTACGTTGCCGATGGTGTCTGAGGC
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGC
* ** * * *
14244969 TCCCGCATATCCAAGCACCAAGG-TGCCGATGGTACCCGAGGCTCTCGCACGATCAAGGCCTAGG
66 TCCCGCAGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGCCTAGG
* * *
14245033 TTACCGATGGTGCTCGAGGCTCCCGCACGACCAGAGGTCT
130 TTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGAGGCCT
* * * * * *
14245073 AGGATGTCGATGGTGCCCGAGCCTCCCGCACGACCAGGGGCCTAAGTTGCCGATAGTGTCCGAGG
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGG
* ** * * * *
14245138 CTCCCGCAAATCCAAGCACCAAGG-TGTCGATGGT-CCCGAGGCACTTGCACGACCAAGGGCCTA
65 CTCCCGCAGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAA-GGCCTA
* * * *
14245201 GGCTGCCGATGGTGCCCGAAGCTCCTGCACGACCAGGGGCCT
128 GGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGAGGCCT
* *
14245243 AGGTTGCCGATGGTGCGCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGG
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGG
* * *
14245308 CTCCTGCCCA-ACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACAACCAAGGGCCT
65 CTCC--CGCAGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAA-GGCCT
* * * *
14245372 AGG-TGTCGATGGTGCCCGAGGCTCTCGCATGACCAGGGGCCT
127 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGAGGCCT
* ** * * *
14245414 AGTTTTTCGATGGTG-CCGAGGTTTCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGG
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGG
* * * * * * *
14245478 CTCCCGCACGACTAGGGGCCTAGGTTGCTGATGGTGTCCGAGGCTCCCTCACGACTAAGGGCC--
65 CTCCCGCA-GACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAA-GGCCTA
**
14245541 --TTGCCGATGGTGTTCGAGGCTCCCGCACGACCA-AGGGCCT
128 GGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGA-GGCCT
* * *
14245581 AGGTGCCGATGGTGGCCGAGACTCCCGCACGACCAAAGGCCTAGG-TGCCGATGGT-CCCGAGGC
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGC
* * * * *
14245644 TCTCGCAAGACCAAGGGCCTAGGTTGCCGATGGTGCCCAAGGATCCCGCACGACCAGGGGCCTAG
66 TCCCGC-AGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCA-AGGCCTAG
* * *
14245709 GTTGTCGATGGTGCCCGAGGCTCCCGCAC-ATCCA-AGCACCA
129 GTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGAG-GCCT
* *
14245750 AGGTGTCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGT
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGC
* * * * * * * * * *
14245814 TCTCACACGACCAAGGGTCTAAGTTGTCGATGGT-ACCGAGGCTTTCGTATGACCAGGGGCCTAG
66 TCCCGCA-GACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCA-AGGCCTAG
* * * * *
14245878 TTTGTCGATGGTG-CCGAGGTTTCTGCACGACCAGAGGCCT
129 GTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGAGGCCT
* * * *
14245918 AGGTTACCGATGTTGCCCGAGGCTCCCGCACGATCAGGGGCCTAGGTTGCCGATGGTGCCCGAGG
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGG
* * * * *
14245983 CTCCCGCACGACCAACGGTCTAGGTTGCCGATGGTGCCTGGGGCT-TCCGCAC-ATCCAAGCACC
65 CTCCCGCA-GACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCT-CGCACGA-CCAAG-GCC
* * * * *
14246046 AAGG-TGCCGATGGTGCCAGAGGATCCCACACGACCAAAGAG-CT
126 TAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGAG-GCCT
* *
14246089 AGGTGCCGATGTTGCCCGAGGCTCCCGCACGACCAATGGCCTAGGTTGCCGATGGT-CCCGAGGC
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGC
* * * * * * *
14246153 TCCCGCACGACTAGGGGTCTAGGTTGCAGATGGTGCCTGAGGCTAC-CGCACGACCAGGGGCGTA
66 TCCCGCA-GACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT-CTCGCACGACCA-AGGCCTA
*
14246217 GGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCT
128 GGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGAGGCCT
* *
14246259 AGGCTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCATAGGTTGCCGATGG
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
14246315 CGCCAAGGCT
Statistics
Matches: 1048, Mismatches: 155, Indels: 76
0.82 0.12 0.06
Matches are distributed among these distances:
165 57 0.05
166 20 0.02
167 59 0.06
168 25 0.02
169 240 0.23
170 475 0.45
171 141 0.13
172 31 0.03
ACGTcount: A:0.18, C:0.31, G:0.34, T:0.17
Consensus pattern (169 bp):
AGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGC
TCCCGCAGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGCCTAGGT
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAGAGGCCT
Found at i:14246474 original size:43 final size:43
Alignment explanation
Indices: 14246434--14246575 Score: 216
Period size: 43 Copynumber: 3.3 Consensus size: 43
14246424 GGTGGTGTTT
* *
14246434 GAGGCTCTCGCACATCCGAGGCACCAAGCTGCCGATGGTG-TC
1 GAGGCTCTCGCACATCCGAGGCACCAAGTTGCCGATGCTGCTC
*
14246476 AGAGGCTCTCGCACATCCGAGGCACAAAGTTGCCGATGCTGCTC
1 -GAGGCTCTCGCACATCCGAGGCACCAAGTTGCCGATGCTGCTC
*
14246520 AAGGCTCTCGCACATCCGAGGCACCAAGTTGCC-AGTGCTGCTC
1 GAGGCTCTCGCACATCCGAGGCACCAAGTTGCCGA-TGCTGCTC
14246563 GAGGCTCTCGCAC
1 GAGGCTCTCGCAC
14246576 CACCGACGTC
Statistics
Matches: 91, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
42 1 0.01
43 88 0.97
44 2 0.02
ACGTcount: A:0.20, C:0.34, G:0.28, T:0.18
Consensus pattern (43 bp):
GAGGCTCTCGCACATCCGAGGCACCAAGTTGCCGATGCTGCTC
Found at i:14247358 original size:58 final size:59
Alignment explanation
Indices: 14247267--14247387 Score: 172
Period size: 58 Copynumber: 2.1 Consensus size: 59
14247257 GGGAGGGACA
* *
14247267 GGGACGATTAATTCATTGTTGGGTACCGGACATGCAACGGTATCCAAATCCTACC-TTT
1 GGGACGATTAATTCATTATTGGGTACCGAACATGCAACGGTATCCAAATCCTACCTTTT
* * * * *
14247325 GGGACGATTCATTCATTATTGGGTATCGAACATGTAACGGTATCCGAATTCTACCTTTT
1 GGGACGATTAATTCATTATTGGGTACCGAACATGCAACGGTATCCAAATCCTACCTTTT
14247384 GGGA
1 GGGA
14247388 TTGGGGAGGG
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
58 48 0.87
59 7 0.13
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (59 bp):
GGGACGATTAATTCATTATTGGGTACCGAACATGCAACGGTATCCAAATCCTACCTTTT
Found at i:14248803 original size:48 final size:48
Alignment explanation
Indices: 14248732--14248826 Score: 190
Period size: 48 Copynumber: 2.0 Consensus size: 48
14248722 ATGAGGAATG
14248732 GGAAAATTGCAAATGCAATCCCCCATAGTTTCACCATAAATCTCGATT
1 GGAAAATTGCAAATGCAATCCCCCATAGTTTCACCATAAATCTCGATT
14248780 GGAAAATTGCAAATGCAATCCCCCATAGTTTCACCATAAATCTCGAT
1 GGAAAATTGCAAATGCAATCCCCCATAGTTTCACCATAAATCTCGAT
14248827 CACCCTTTCC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.26
Consensus pattern (48 bp):
GGAAAATTGCAAATGCAATCCCCCATAGTTTCACCATAAATCTCGATT
Found at i:14251539 original size:5 final size:5
Alignment explanation
Indices: 14251531--14251571 Score: 55
Period size: 5 Copynumber: 8.2 Consensus size: 5
14251521 TACAAGAAGT
* * *
14251531 ATGGC ATGGC ATGGC ATGGC ATGGC ACGGA ACGGC ATGGC A
1 ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC A
14251572 GAAAATTGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.24, C:0.22, G:0.39, T:0.15
Consensus pattern (5 bp):
ATGGC
Found at i:14251629 original size:192 final size:190
Alignment explanation
Indices: 14251293--14251682 Score: 559
Period size: 192 Copynumber: 2.0 Consensus size: 190
14251283 AGTTAGTATT
* *
14251293 TTTAACTGAAAATTTTTTCTGTTGGCCCAAAAGAAATACAAGAAGCCGAATGAAGTATGGCATAG
1 TTTAACTGAAAATTTTTTCTGTTGGCCCAAAACAAATACAAGAAGCCGAATG-AGCATGGCATAG
* * *
14251358 CATGGCATGGTACGGCACGACAGAAAATTGAACAAGTGCCCGGACCGCCAACAGTTGGGAGATCG
65 CATGGCACGGAACGGCACGACAGAAAATTGAACAAGTGCCCGGACAGCCAACAGTTGGGAGATCG
* *
14251423 CACCCGCACCACCACGGCCCCCGTTGTGCCATGTTTCTCGAGGAGGCGGCACGGCCAAGTG
130 CACCCACACCACCACGACCCCCGTTGTGCCATGTTTCTCGAGGAGGCGGCACGGCCAAGTG
* ** *
14251484 TTTAACTTAGAAATTTTTTCCT-TTGGCCCAAAACAAATACAAGAAGTATGGCATG-GCATGGCA
1 TTTAACTGA-AAATTTTTT-CTGTTGGCCCAAAACAAATACAAGAAG--CCGAATGAGCATGGCA
* * * * * *
14251547 TGGCATGGCACGGAACGGCATGGCAGAAAATTGAACAAGTGCCTGGACAGCCAATAGTTGGGAGC
62 TAGCATGGCACGGAACGGCACGACAGAAAATTGAACAAGTGCCCGGACAGCCAACAGTTGGGAGA
*
14251612 TCGCACCCACACCACCACGACCCCCGTTGTGCCATGTTTCTCGAGGGGGCGGCACGGCCAAGTG
127 TCGCACCCACACCACCACGACCCCCGTTGTGCCATGTTTCTCGAGGAGGCGGCACGGCCAAGTG
14251676 TTTAACT
1 TTTAACT
14251683 AACTCCTTAC
Statistics
Matches: 177, Mismatches: 18, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
191 8 0.05
192 163 0.92
193 2 0.01
194 4 0.02
ACGTcount: A:0.28, C:0.25, G:0.26, T:0.20
Consensus pattern (190 bp):
TTTAACTGAAAATTTTTTCTGTTGGCCCAAAACAAATACAAGAAGCCGAATGAGCATGGCATAGC
ATGGCACGGAACGGCACGACAGAAAATTGAACAAGTGCCCGGACAGCCAACAGTTGGGAGATCGC
ACCCACACCACCACGACCCCCGTTGTGCCATGTTTCTCGAGGAGGCGGCACGGCCAAGTG
Found at i:14254390 original size:35 final size:35
Alignment explanation
Indices: 14254351--14254417 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
14254341 CTCCGGAGCT
*
14254351 TGGCAAATATGGAAAGTAATCTTCAAAGATATGCG
1 TGGCAAATATGGAAAGGAATCTTCAAAGATATGCG
* *
14254386 TGGCAAATATGGAAGGGGATCTTCAAAGATAT
1 TGGCAAATATGGAAAGGAATCTTCAAAGATAT
14254418 ATGATCCTAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.39, C:0.10, G:0.25, T:0.25
Consensus pattern (35 bp):
TGGCAAATATGGAAAGGAATCTTCAAAGATATGCG
Found at i:14259735 original size:13 final size:13
Alignment explanation
Indices: 14259717--14259745 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
14259707 GGTTGTTTAT
14259717 TAAACTAATTAAC
1 TAAACTAATTAAC
14259730 TAAACTAATTAAC
1 TAAACTAATTAAC
14259743 TAA
1 TAA
14259746 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:14268131 original size:13 final size:13
Alignment explanation
Indices: 14268113--14268137 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14268103 ACATCCTACC
14268113 TTTTTTTCTTTTT
1 TTTTTTTCTTTTT
14268126 TTTTTTTCTTTT
1 TTTTTTTCTTTT
14268138 GGAATTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (13 bp):
TTTTTTTCTTTTT
Found at i:14268349 original size:22 final size:21
Alignment explanation
Indices: 14268302--14268350 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
14268292 CCTAAATTAG
* *
14268302 AATAATTTAAATAAATTTACA
1 AATAATTAAAATAAATTTAAA
*
14268323 TATAATTAAAATAAAATTTAAA
1 AATAATTAAAAT-AAATTTAAA
14268345 AATAAT
1 AATAAT
14268351 CTACACATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (21 bp):
AATAATTAAAATAAATTTAAA
Found at i:14268969 original size:21 final size:22
Alignment explanation
Indices: 14268943--14268992 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 22
14268933 CCTCAATAAT
*
14268943 ATATATTATACCAT-CTTGTTA
1 ATATATTATACCATACTTATTA
*
14268964 ATATATTATCCCATACTTATTA
1 ATATATTATACCATACTTATTA
14268986 AT-TATTA
1 ATATATTA
14268993 CAATATTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 18 0.69
22 8 0.31
ACGTcount: A:0.36, C:0.14, G:0.02, T:0.48
Consensus pattern (22 bp):
ATATATTATACCATACTTATTA
Found at i:14269637 original size:60 final size:60
Alignment explanation
Indices: 14269567--14269679 Score: 172
Period size: 60 Copynumber: 1.9 Consensus size: 60
14269557 CTAGTTAATC
*
14269567 AATTACTAGTAAATTTATTCTCTAATCATTTAACTATAAAAAATTATAAAATAAATACTT
1 AATTACTAGTAAATTTATTCTATAATCATTTAACTATAAAAAATTATAAAATAAATACTT
* * * * *
14269627 AATTATTAGTAAATTTCTTTTATTATTATTTAACTATAAAAAATTATAAAATA
1 AATTACTAGTAAATTTATTCTATAATCATTTAACTATAAAAAATTATAAAATA
14269680 GTCATCCAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
60 47 1.00
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (60 bp):
AATTACTAGTAAATTTATTCTATAATCATTTAACTATAAAAAATTATAAAATAAATACTT
Found at i:14280546 original size:13 final size:13
Alignment explanation
Indices: 14280528--14280552 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14280518 CATCAACACT
14280528 GTGATTCCAGGCC
1 GTGATTCCAGGCC
14280541 GTGATTCCAGGC
1 GTGATTCCAGGC
14280553 TTCGAATCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.28, G:0.32, T:0.24
Consensus pattern (13 bp):
GTGATTCCAGGCC
Found at i:14281687 original size:17 final size:18
Alignment explanation
Indices: 14281666--14281719 Score: 53
Period size: 17 Copynumber: 3.1 Consensus size: 18
14281656 TTACATTATC
14281666 ATTTTTATATTATTATAT
1 ATTTTTATATTATTATAT
*
14281684 -TTTTTCT-TGTATTATAT
1 ATTTTTATAT-TATTATAT
14281701 ATTTATTA-ATTATT-TAT
1 ATTT-TTATATTATTATAT
14281718 AT
1 AT
14281720 ACATTGTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
16 1 0.03
17 19 0.63
18 7 0.23
19 3 0.10
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (18 bp):
ATTTTTATATTATTATAT
Found at i:14281839 original size:17 final size:19
Alignment explanation
Indices: 14281816--14281932 Score: 61
Period size: 19 Copynumber: 6.2 Consensus size: 19
14281806 ATTTTATAAC
14281816 ATTTATTATATT-TTTATT
1 ATTTATTATATTATTTATT
14281834 -TTTATTCTATATTATTTATT
1 ATTTA-T-TATATTATTTATT
*
14281854 ATTT-TTATAGGTTATATA-T
1 ATTTATTATA--TTATTTATT
* *
14281873 A-TCA-TATATTATCTATT
1 ATTTATTATATTATTTATT
*
14281890 ATATTATT-TAGGTT-TATATT
1 AT-TTATTATA--TTATTTATT
* *
14281910 ATTCATTATATTATTTATA
1 ATTTATTATATTATTTATT
14281929 ATTT
1 ATTT
14281933 TAAAATTTGT
Statistics
Matches: 75, Mismatches: 9, Indels: 29
0.66 0.08 0.26
Matches are distributed among these distances:
16 6 0.08
17 6 0.08
18 12 0.16
19 24 0.32
20 22 0.29
21 5 0.07
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.62
Consensus pattern (19 bp):
ATTTATTATATTATTTATT
Found at i:14284639 original size:54 final size:54
Alignment explanation
Indices: 14284557--14284661 Score: 210
Period size: 54 Copynumber: 1.9 Consensus size: 54
14284547 CTTCTTCGAT
14284557 GATTATTCACCGTTGAAAGACATAGTAGCTTCAACTAGGAGAGTTGATGTTGAG
1 GATTATTCACCGTTGAAAGACATAGTAGCTTCAACTAGGAGAGTTGATGTTGAG
14284611 GATTATTCACCGTTGAAAGACATAGTAGCTTCAACTAGGAGAGTTGATGTT
1 GATTATTCACCGTTGAAAGACATAGTAGCTTCAACTAGGAGAGTTGATGTT
14284662 CTAAAAGAGA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.30
Consensus pattern (54 bp):
GATTATTCACCGTTGAAAGACATAGTAGCTTCAACTAGGAGAGTTGATGTTGAG
Found at i:14285875 original size:14 final size:14
Alignment explanation
Indices: 14285856--14285885 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14285846 AAGATATTCT
14285856 TTTTCTAAATAAAG
1 TTTTCTAAATAAAG
*
14285870 TTTTCTAAATGAAG
1 TTTTCTAAATAAAG
14285884 TT
1 TT
14285886 GAACCAGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.07, G:0.10, T:0.47
Consensus pattern (14 bp):
TTTTCTAAATAAAG
Found at i:14294046 original size:44 final size:44
Alignment explanation
Indices: 14293986--14294305 Score: 217
Period size: 44 Copynumber: 7.3 Consensus size: 44
14293976 CAAAGAAACA
*
14293986 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * * ***
14294030 AGATCTGACATTCCTGTGCTTACAGTGAAGCAGATC-AAGGATTTT
1 AGATCTGGCATCCCTGTGTTTATAGGGAA-CAGATCGAA-GATAGC
*
14294075 AG--CATGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* *
14294118 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAAC
1 AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* ** * * * * **
14294162 AGATCTGACA-CTTATGTGCTTACAGTGAAGCAGATCGAGGATTTC
1 AGATCTGGCATC-CCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
* *
14294207 AG--CATGGCGTCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 AGATC-TGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* * * * * * *
14294250 AGATTTGGCATCTCTGTATTGT-CAGAGAGCAGATCGAAGATACC
1 AGATCTGGCATCCCTGTGTT-TATAGGGAACAGATCGAAGATAGC
*
14294294 AGATTTGGCATC
1 AGATCTGGCATC
14294306 TCTGCATTAG
Statistics
Matches: 208, Mismatches: 51, Indels: 34
0.71 0.17 0.12
Matches are distributed among these distances:
42 2 0.01
43 22 0.11
44 155 0.75
45 29 0.14
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (44 bp):
AGATCTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
Found at i:14294223 original size:132 final size:132
Alignment explanation
Indices: 14293986--14294297 Score: 493
Period size: 132 Copynumber: 2.4 Consensus size: 132
14293976 CAAAGAAACA
* *
14293986 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACATTCATGTGCTT
*
14294051 ACAGTGAAGCAGATCAAGGATTTTAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGTGAAGCAGATCAAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
14294116 GC
131 GC
14294118 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACACTT-ATGTGCT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACA-TTCATGTGCT
* *
14294182 TACAGTGAAGCAGATCGAGGATTTCAGCATGGCGTCCCTGTGTTTATAGGGAACAAGTTGAAGAT
65 TACAGTGAAGCAGATCAAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
14294247 AGC
130 AGC
* * * * * *
14294250 AGATTTGGCATCTCTGTATTGT-CAGAGAGCAGATCGAAGATACCAGAT
1 AGATTTGGCATCCCTGTGTT-TATAGGGAACAGATCGAAGATAACAGAT
14294298 TTGGCATCTC
Statistics
Matches: 167, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
132 164 0.98
133 3 0.02
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.28
Consensus pattern (132 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACATTCATGTGCTT
ACAGTGAAGCAGATCAAGGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
GC
Found at i:14294306 original size:44 final size:44
Alignment explanation
Indices: 14294241--14294333 Score: 143
Period size: 44 Copynumber: 2.1 Consensus size: 44
14294231 GGAACAAGTT
* *
14294241 GAAGATAGCAGATTTGGCATCTCTGTATT-GTCAGAGAGCAGATC
1 GAAGATACCAGATTTGGCATCTCTGCATTAGT-AGAGAGCAGATC
*
14294285 GAAGATACCAGATTTGGCATCTCTGCATTAGTGGAGAGCAGATC
1 GAAGATACCAGATTTGGCATCTCTGCATTAGTAGAGAGCAGATC
14294329 GAAGA
1 GAAGA
14294334 CATAGTTGAT
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
44 43 0.96
45 2 0.04
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (44 bp):
GAAGATACCAGATTTGGCATCTCTGCATTAGTAGAGAGCAGATC
Found at i:14294647 original size:204 final size:205
Alignment explanation
Indices: 14294320--14294828 Score: 765
Period size: 205 Copynumber: 2.5 Consensus size: 205
14294310 CATTAGTGGA
* * *
14294320 GAGCAGATCGAAGACATAGTTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACATGTTTACGTTGAAGCAAATCTAAGATGAT
*
14294385 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATGGGG-GAAGA
66 TTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAGTCTGGCATCTCCACTTCAATGGGGAGAAGA
* * * *** * *
14294449 CACATAGCAGA-TC-CAAACTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCT
131 CACATAGCA-ATTCTCAAA-TTCAGATGGTTATACTGAAGCAGATCCAACACAATTTAGCACCCT
14294512 TGTGCTTACAAG
194 TGTGCTTACAAG
* *
14294524 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACATGCTTACGTCGAAGCAAATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACATGTTTACGTTGAAGCAAATCTAAGATGAT
*
14294589 TTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAGTCTGGCATCTCCACTTCAATGGGGAGCAGA
66 TTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAGTCTGGCATCTCCACTTCAATGGGGAGAAGA
* *
14294654 TACATAGCAATTCTCACATTCAGATGGTTATACTGAAGCAGATCCAACACAATTTAGCACCCTTG
131 CACATAGCAATTCTCAAATTCAGATGGTTATACTGAAGCAGATCCAACACAATTTAGCACCCTTG
14294719 TGCTTACAAG
196 TGCTTACAAG
* * *
14294729 GAGCAAATCGAAGACACAGCTGATTTAGCTTTCATGA-GTTTACGTTGAAGCAAATCTAAGATGA
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCA-CATGTTTACGTTGAAGCAAATCTAAGATGA
* *
14294793 TTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAG
65 TTTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAG
14294829 ATACCAGATT
Statistics
Matches: 277, Mismatches: 24, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
204 119 0.43
205 154 0.56
206 4 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (205 bp):
GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACATGTTTACGTTGAAGCAAATCTAAGATGAT
TTGGCATCTCTGTATTGTCAGAGAGCAAATCGAAGTCTGGCATCTCCACTTCAATGGGGAGAAGA
CACATAGCAATTCTCAAATTCAGATGGTTATACTGAAGCAGATCCAACACAATTTAGCACCCTTG
TGCTTACAAG
Found at i:14295541 original size:13 final size:13
Alignment explanation
Indices: 14295523--14295547 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14295513 TGCGTCGTCT
14295523 GTGATTCCAGGCC
1 GTGATTCCAGGCC
14295536 GTGATTCCAGGC
1 GTGATTCCAGGC
14295548 TTCGAATCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.28, G:0.32, T:0.24
Consensus pattern (13 bp):
GTGATTCCAGGCC
Found at i:14298278 original size:16 final size:15
Alignment explanation
Indices: 14298259--14298294 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
14298249 TTTCATTACG
14298259 TTTTTAAGACTCATT
1 TTTTTAAGACTCATT
*
14298274 TTTTTAAGATTCATT
1 TTTTTAAGACTCATT
14298289 TGTTTT
1 T-TTTT
14298295 CCTTTTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 15 0.79
16 4 0.21
ACGTcount: A:0.22, C:0.08, G:0.08, T:0.61
Consensus pattern (15 bp):
TTTTTAAGACTCATT
Found at i:14299044 original size:13 final size:13
Alignment explanation
Indices: 14299026--14299054 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
14299016 GGTTGTTTAT
14299026 TAAACTAATTAAC
1 TAAACTAATTAAC
14299039 TAAACTAATTAAC
1 TAAACTAATTAAC
14299052 TAA
1 TAA
14299055 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:14300514 original size:43 final size:44
Alignment explanation
Indices: 14300465--14300622 Score: 189
Period size: 43 Copynumber: 3.7 Consensus size: 44
14300455 GATTGCTGAG
* *
14300465 ATGTGATTACATGTAAGGCCATGTCTGGGACATTGGCATTGTAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * *
14300509 -TGTGATTACGTGTAAGA-CATGTCTAGGACATTGACATCGT-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * *
14300550 ATATGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCG-AT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * *
14300593 ATGTGATAACACGTAAGACCATATCTGGGA
1 ATGTGATTACATGTAAGACCATGTCTGGGA
14300623 TATGGAATTG
Statistics
Matches: 96, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
41 1 0.01
42 35 0.36
43 60 0.62
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:14305095 original size:14 final size:14
Alignment explanation
Indices: 14305076--14305107 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
14305066 CATCCATGCC
14305076 AAACTATCAAATGT
1 AAACTATCAAATGT
14305090 AAACTATCAAATGT
1 AAACTATCAAATGT
14305104 AAAC
1 AAAC
14305108 ATACTTCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.53, C:0.16, G:0.06, T:0.25
Consensus pattern (14 bp):
AAACTATCAAATGT
Found at i:14313305 original size:19 final size:20
Alignment explanation
Indices: 14313262--14313316 Score: 57
Period size: 19 Copynumber: 3.0 Consensus size: 20
14313252 AATAAGACCC
14313262 CATT-TCTCACT-TTTCTAAT
1 CATTCTCTCACTCTTTC-AAT
14313281 CA-TCTCTCACTCTTTC-AT
1 CATTCTCTCACTCTTTCAAT
*
14313299 CATTCTCTC-CTCTCTCAA
1 CATTCTCTCACTCTTTCAA
14313317 CTTTCTTATC
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
18 11 0.35
19 16 0.52
20 4 0.13
ACGTcount: A:0.18, C:0.36, G:0.00, T:0.45
Consensus pattern (20 bp):
CATTCTCTCACTCTTTCAAT
Found at i:14327320 original size:64 final size:64
Alignment explanation
Indices: 14327124--14327409 Score: 238
Period size: 64 Copynumber: 4.4 Consensus size: 64
14327114 CATAATTTTG
* * * * ** *
14327124 GCTCTCTTGTAC-ACATGATGAACACTTAGTACCACCCATGTGACCTAGCCACT-T-TATCTCGT
1 GCTCTCTTGT-CTACATGGTGTACACATAGTATCACCCATGCAACCTAGCTA-TATATATCTCGT
14327186 A
64 A
* * * * * * * * * * *
14327187 GCTCTCTTGTTTTCATGGTGTCCTTCACCTGGAACCACACATGCAACCTAGCTACATTTATCTCA
1 GCTCTCTTGTCTACATGGTG---TACACATAGTATCACCCATGCAACCTAGCTATATATATCTCG
14327252 TA
63 TA
*
14327254 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCAACCTAGCTATATATATCCCGTA
1 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCAACCTAGCTATATATATCTCGTA
* ** *
14327318 GCTCTCTTATCTACATGGTGTACACATAGTATCACCCATGTGACCTAGCTACCTCATAATGTCTC
1 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCAACCTAGCTA--T-AT-ATATCTC
14327383 GTA
62 GTA
*
14327386 GCTCTCTTGTAC-ACATGGTATACA
1 GCTCTCTTGT-CTACATGGTGTACA
14327410 TCCCGTATTA
Statistics
Matches: 179, Mismatches: 33, Indels: 17
0.78 0.14 0.07
Matches are distributed among these distances:
63 16 0.09
64 82 0.46
66 24 0.13
67 28 0.16
68 28 0.16
69 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.14, T:0.32
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCAACCTAGCTATATATATCTCGTA
Found at i:14327936 original size:30 final size:30
Alignment explanation
Indices: 14327902--14327962 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
14327892 TCCTTAACTC
*
14327902 AAACTTTTACAAAATTACAATTTTGCTCCT
1 AAACTTTTACAAAATTACAATTTTGCCCCT
* * * *
14327932 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTACAAAATTACAATTTTGCCCCT
14327962 A
1 A
14327963 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.05, T:0.41
Consensus pattern (30 bp):
AAACTTTTACAAAATTACAATTTTGCCCCT
Found at i:14335114 original size:3 final size:3
Alignment explanation
Indices: 14335108--14335139 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
14335098 CACCACCTCC
14335108 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
14335140 AGTTTACTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:14337169 original size:13 final size:13
Alignment explanation
Indices: 14337151--14337175 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14337141 AGTAATCACG
14337151 CACGGGCGTGTCA
1 CACGGGCGTGTCA
14337164 CACGGGCGTGTC
1 CACGGGCGTGTC
14337176 CTTGCTGAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.32, G:0.40, T:0.16
Consensus pattern (13 bp):
CACGGGCGTGTCA
Found at i:14348639 original size:21 final size:21
Alignment explanation
Indices: 14348613--14348652 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
14348603 AATAGATAGT
*
14348613 GAAACAATCGATTGAAAAGGG
1 GAAACAATCAATTGAAAAGGG
14348634 GAAACAATCAATTGAAAAG
1 GAAACAATCAATTGAAAAG
14348653 AGGAGAGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.53, C:0.10, G:0.23, T:0.15
Consensus pattern (21 bp):
GAAACAATCAATTGAAAAGGG
Found at i:14353983 original size:25 final size:25
Alignment explanation
Indices: 14353955--14354022 Score: 127
Period size: 25 Copynumber: 2.7 Consensus size: 25
14353945 TATACATTAC
14353955 AATTATATTTAACTACACCTAATGA
1 AATTATATTTAACTACACCTAATGA
*
14353980 AATTATATTTAACTACACCTTATGA
1 AATTATATTTAACTACACCTAATGA
14354005 AATTATATTTAACTACAC
1 AATTATATTTAACTACAC
14354023 ACTTTAGTCC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.43, C:0.16, G:0.03, T:0.38
Consensus pattern (25 bp):
AATTATATTTAACTACACCTAATGA
Found at i:14354395 original size:35 final size:34
Alignment explanation
Indices: 14354331--14354397 Score: 82
Period size: 34 Copynumber: 1.9 Consensus size: 34
14354321 ATACATATGA
**
14354331 TTAAATTAATTAATCTTAATTACTTTAACAAAAG
1 TTAAATTAATTAATCTTAATTACAATAACAAAAG
*
14354365 TTAAATTAATTAATTCTTAGTTTA-AATAACAAA
1 TTAAATTAATTAA-TCTTA-ATTACAATAACAAA
14354398 TTAGTGGATA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
34 13 0.46
35 12 0.43
36 3 0.11
ACGTcount: A:0.48, C:0.07, G:0.03, T:0.42
Consensus pattern (34 bp):
TTAAATTAATTAATCTTAATTACAATAACAAAAG
Found at i:14360896 original size:47 final size:47
Alignment explanation
Indices: 14360827--14360921 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
14360817 GACCTGACAC
14360827 AGATGTATATAATTGGCTCAGATGAGCATCAGATGTGATTTGCACCT
1 AGATGTATATAATTGGCTCAGATGAGCATCAGATGTGATTTGCACCT
14360874 AGATGTATATAATTGGCTCAGATGAGCATCAGATGTGATTTGCACCT
1 AGATGTATATAATTGGCTCAGATGAGCATCAGATGTGATTTGCACCT
14360921 A
1 A
14360922 TGTATTGAGT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.32
Consensus pattern (47 bp):
AGATGTATATAATTGGCTCAGATGAGCATCAGATGTGATTTGCACCT
Found at i:14379695 original size:48 final size:48
Alignment explanation
Indices: 14379634--14379908 Score: 266
Period size: 48 Copynumber: 5.7 Consensus size: 48
14379624 GATATGTGTA
* *
14379634 CCAGTGTAAGACCATGTCTGGGACATGGTATCGGCCAGGATATGAGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGAG
* * * ** * *
14379682 CCAGTGTAAGACCATGTTTGGAATATGGCATCGGCGTTGATATGTGCG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGAG
* * * *
14379730 CTAGTGTAAGACCAGGTCTAGGACATGGCATCGGCCA-CATCATGAGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGAT-ATGAGAG
* * * ** * * *
14379778 CTAGTGTAAGACCATGTTTGGTACATGGCATCAACAATGAGACGAGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGAG
* * * *
14379826 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCTG-CATGTGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-ATGATATGAGAG
* * *
14379874 CCAATGTAAGACCATGTTTGGAACATGGCATCGGC
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
14379909 AATTCACCCT
Statistics
Matches: 181, Mismatches: 43, Indels: 6
0.79 0.19 0.03
Matches are distributed among these distances:
47 2 0.01
48 176 0.97
49 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (48 bp):
CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGAG
Done.