Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 50 of 362
Found at i:14769707 original size:27 final size:27
Alignment explanation
Indices: 14769677--14769849 Score: 238
Period size: 27 Copynumber: 6.4 Consensus size: 27
14769667 GGGGCAAAAT
* * * *
14769677 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
14769704 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
14769731 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
14769758 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
**
14769785 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
14769812 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
14769839 GATAATTCTAC
1 GGTAATTCTAC
14769850 AAATCAAGAG
Statistics
Matches: 127, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 127 1.00
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:14769871 original size:81 final size:81
Alignment explanation
Indices: 14769691--14769872 Score: 231
Period size: 81 Copynumber: 2.2 Consensus size: 81
14769681 ATTTTACCCC
* * * *
14769691 ACAAGGGTATCTCGGTAATTCTACCCTATAGGGGTATTTCGATATTTCTACCCTACAAGGGTATT
1 ACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAAGGGTATT
* **
14769756 TCGGTAATTCTACCCT
66 TCGATAATTCTACAAT
* ** * *
14769772 ACAGGGGTATTTTAATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATT
1 ACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAAGGGTATT
14769837 TCGATAATTCTACAA-
66 TCGATAATTCTACAAT
*
14769852 ATCAAGAGTATTTCGATAATT
1 A-CAAGGGTATTTCGATAATT
14769873 TCACAAGTCA
Statistics
Matches: 84, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
80 1 0.01
81 83 0.99
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (81 bp):
ACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAAGGGTATT
TCGATAATTCTACAAT
Found at i:14769872 original size:54 final size:54
Alignment explanation
Indices: 14769679--14769849 Score: 270
Period size: 54 Copynumber: 3.2 Consensus size: 54
14769669 GGCAAAATGG
* * * *
14769679 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTATAGGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
* **
14769733 TATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAA
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
*
14769787 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
14769841 TAATTCTAC
1 TAATTCTAC
14769850 AAATCAAGAG
Statistics
Matches: 106, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 106 1.00
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.35
Consensus pattern (54 bp):
TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
Found at i:14769885 original size:81 final size:81
Alignment explanation
Indices: 14769706--14769899 Score: 205
Period size: 81 Copynumber: 2.4 Consensus size: 81
14769696 GGTATCTCGG
* * * * * **
14769706 TAATTCTACCCTATAGGGGTATTTCGATATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCC
1 TAATTCTACACTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACAA
* * *
14769771 TACAGGGGTATTTTAA
66 TACAAGAGTATTTCAA
* *
14769787 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACAA
1 TAATTCTACACTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACAA
*
14769852 -ATCAAGAGTATTTCGA
66 TA-CAAGAGTATTTCAA
* *
14769868 TAATT-T-CACAAGTCAGGGGTATTTTGGTAATT
1 TAATTCTACACTA--CAGGGGTATTTCGGTAATT
14769900 TTACAAGCTA
Statistics
Matches: 96, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
79 3 0.03
80 2 0.02
81 91 0.95
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (81 bp):
TAATTCTACACTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACAA
TACAAGAGTATTTCAA
Found at i:14769906 original size:27 final size:27
Alignment explanation
Indices: 14769800--14770036 Score: 215
Period size: 27 Copynumber: 8.8 Consensus size: 27
14769790 TTCTACCCTA
* * **
14769800 CAGGGGTATTTCGGTAATTCTACCCTA-
1 CAGGGGTATTTTGGTAATTTTA-CAAAC
* * * *
14769827 CAGGGGTATTTCGATAATTCTACAAAT
1 CAGGGGTATTTTGGTAATTTTACAAAC
* * * * * **
14769854 CAAGAGTATTTCGATAATTTCACAAGT
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
14769881 CAGGGGTATTTTGGTAATTTTACAAGC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* * *
14769908 TAAGGGTATTTTGGTAATTTTACAAGC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
14769935 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* *
14769962 CAGGGATATTTTAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* **
14769989 CAGGGTTATTTTGGTAATTTTGTAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* *
14770016 CAAGGGTATTTTAGTAATTTT
1 CAGGGGTATTTTGGTAATTTT
14770037 GTAAATCGAG
Statistics
Matches: 181, Mismatches: 28, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 2 0.01
27 179 0.99
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.38
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:14770357 original size:27 final size:27
Alignment explanation
Indices: 14770029--14770346 Score: 442
Period size: 27 Copynumber: 11.8 Consensus size: 27
14770019 GGGTATTTTA
* *
14770029 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * *
14770056 ATAATTCTGTAAATCGATGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
14770083 ATAATTTTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
14770110 GTAATTCTATAAATCAAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
14770137 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAATG
*
14770164 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
14770191 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
14770218 GTAATTCTGTAAATCGAGGATAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
14770245 GTAATTCTGTAAATCGAGGATAAAGA-G
1 GTAATTCTATAAATCGAGGGTAAA-ATG
14770272 GTAATTCTATAAATCGA-GGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
14770298 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
14770325 GTAATTCTATAAATTGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
14770347 CTTTGGTAAT
Statistics
Matches: 264, Mismatches: 24, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
25 1 0.00
26 23 0.09
27 239 0.91
28 1 0.00
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.31
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:14773708 original size:15 final size:15
Alignment explanation
Indices: 14773684--14773715 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
14773674 TATGCATGCA
*
14773684 AAATATAAAAGACAT
1 AAATACAAAAGACAT
14773699 AAATACAAAAGACAT
1 AAATACAAAAGACAT
14773714 AA
1 AA
14773716 TAATGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:14780836 original size:130 final size:130
Alignment explanation
Indices: 14780603--14781179 Score: 730
Period size: 130 Copynumber: 4.4 Consensus size: 130
14780593 AATAACTCAT
* * * **
14780603 TGATTTAATATCACAATTGATATTATTAAGGCTCGTTGGTTTACAATCACAATTTAAGTTCATTG
1 TGATTTAAGATCACAATTGATATTATTAAGGCTCGTTGATTTACGATCACAACCTAAGTTCATTG
* * * *
14780668 ATTTACTATCATGAGCAATCTTCTATTACTTAGTTGATTTACTATCGCTACTCTAAATAGCTCGT
66 ATTTACTATCATGAACAATCTTCTATGAGTTAGTTGATTTACTATCGCTACTCTAAATAGCTCGC
* * * * *
14780733 TGATTTAAGATCACAATTGATATTATTGAGGCTCGTTGGTTTACGATCGCAACTTAAGTTCATTC
1 TGATTTAAGATCACAATTGATATTATTAAGGCTCGTTGATTTACGATCACAACCTAAGTTCATTG
* * * * *
14780798 ATTTACTATTATGAACAATCTTCTATGAGTTAGCTGATTTACTATTGCGACTAC-AAACAGCTCG
66 ATTTACTATCATGAACAATCTTCTATGAGTTAGTTGATTTACTATCGCTACT-CTAAATAGCTCG
14780862 C
130 C
* *
14780863 TGATTTAAGATCACAGTTGATATTATTAAGGCTCGTTGATTTACGATCGCAACCTAAGTTCATTG
1 TGATTTAAGATCACAATTGATATTATTAAGGCTCGTTGATTTACGATCACAACCTAAGTTCATTG
* * * * *
14780928 ATTTACTATCATGAAAAATCTTCTATGTGTTAGTTGATTTACTATCGCTACTTTAAAAATCTCGC
66 ATTTACTATCATGAACAATCTTCTATGAGTTAGTTGATTTACTATCGCTACTCTAAATAGCTCGC
* * * * * *
14780993 TGATTTAATATCACAACTGATATTATTAAGGCTCGTTGATTTTCGATCATAGCCTAAGTTCCTTG
1 TGATTTAAGATCACAATTGATATTATTAAGGCTCGTTGATTTACGATCACAACCTAAGTTCATTG
* * *
14781058 A-TTACTATCATGAACAATCTGCTATGAGTTAGTTGATTTACTATCACTACTCCAAATAGCTCGC
66 ATTTACTATCATGAACAATCTTCTATGAGTTAGTTGATTTACTATCGCTACTCTAAATAGCTCGC
* * * * * *
14781122 T-AGTTTAAGATCAAAACTGATATTATTAAGG-TTGACTGATTTAGGATCACAGCCTAAG
1 TGA-TTTAAGATCACAATTGATATTATTAAGGCTCG-TTGATTTACGATCACAACCTAAG
14781180 ATTAATTTAC
Statistics
Matches: 391, Mismatches: 52, Indels: 9
0.87 0.12 0.02
Matches are distributed among these distances:
128 3 0.01
129 101 0.26
130 286 0.73
131 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (130 bp):
TGATTTAAGATCACAATTGATATTATTAAGGCTCGTTGATTTACGATCACAACCTAAGTTCATTG
ATTTACTATCATGAACAATCTTCTATGAGTTAGTTGATTTACTATCGCTACTCTAAATAGCTCGC
Found at i:14785667 original size:21 final size:20
Alignment explanation
Indices: 14785638--14785677 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
14785628 CATGTATTTT
14785638 AATGATTGATGATAGATTATG
1 AATGATTGATGATA-ATTATG
*
14785659 AATGTTTGATGATAATTAT
1 AATGATTGATGATAATTAT
14785678 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.38, C:0.00, G:0.20, T:0.42
Consensus pattern (20 bp):
AATGATTGATGATAATTATG
Found at i:14785685 original size:20 final size:21
Alignment explanation
Indices: 14785643--14785685 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
14785633 ATTTTAATGA
*
14785643 TTGATGATAGATTATGAATGT
1 TTGATGATAGATTATGAAAGT
14785664 TTGATGATA-ATTAT-ACAAGT
1 TTGATGATAGATTATGA-AAGT
14785684 TT
1 TT
14785686 TGTTAAGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 10 0.50
21 9 0.45
ACGTcount: A:0.35, C:0.02, G:0.19, T:0.44
Consensus pattern (21 bp):
TTGATGATAGATTATGAAAGT
Found at i:14789645 original size:1 final size:1
Alignment explanation
Indices: 14789639--14789663 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
14789629 TGCAGTGCAC
14789639 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
14789664 CACAAACGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:14798137 original size:17 final size:17
Alignment explanation
Indices: 14798115--14798149 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
14798105 ACGATGCAGT
14798115 GCTCTTAAAAACCTAGA
1 GCTCTTAAAAACCTAGA
*
14798132 GCTCTTAAACACCTAGA
1 GCTCTTAAAAACCTAGA
14798149 G
1 G
14798150 GTATCGATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.37, C:0.26, G:0.14, T:0.23
Consensus pattern (17 bp):
GCTCTTAAAAACCTAGA
Found at i:14810114 original size:12 final size:12
Alignment explanation
Indices: 14810099--14810132 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
14810089 ATGCATAAGG
14810099 AGATGCAAGAAC
1 AGATGCAAGAAC
*
14810111 AGATGCAAGCAC
1 AGATGCAAGAAC
*
14810123 AAATGCAAGA
1 AGATGCAAGA
14810133 GCAATTGGCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.50, C:0.18, G:0.24, T:0.09
Consensus pattern (12 bp):
AGATGCAAGAAC
Found at i:14813163 original size:14 final size:13
Alignment explanation
Indices: 14813140--14813171 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
14813130 GGGATATCAA
14813140 AACAATAATTAAG
1 AACAATAATTAAG
14813153 AACACATAATTAAG
1 AACA-ATAATTAAG
14813167 AACAA
1 AACAA
14813172 GTTAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:14816686 original size:546 final size:542
Alignment explanation
Indices: 14815654--14816734 Score: 1713
Period size: 546 Copynumber: 2.0 Consensus size: 542
14815644 GATTGTGTTA
* * *
14815654 TTTCGTGATAGGTTTTAAATATTTATAATTACTCGTTCTTAAACTAACTATTATTGCGATGTAGG
1 TTTCGTGATAGGTTTTAAATATTTATAATTACTCATTCTTAAACCAACTATTATCGCGATGTAGG
* * * *
14815719 CAAGTGTATCTATCGAACAGTAGTATAGTTTTAGCAAGACTTAATTGTCGAACCCAAAGGAACTA
66 CAAGTGTACCTATCAAACAATAGTATAGTTTTAGCAAGACTGAATTGTCGAACCCAAAGGAACTA
*
14815784 AAAGTACTAGTAATGACTGTCTTTTTATTATCTAGCCTAAGAATAAGGGGGTTTTGTTTTAACTA
131 AAAGTACTAGTAATGACCGTCTTTTTATTATCTAGCCTAAGAATAAGGGGGTTTTGTTTTAACTA
* * *
14815849 ACTAATTATCTAAACTAAGGATTCACAGAAAGTAGAATTGGGGAATTACTTTTGGAAAAACGATT
196 ACTAATTATCTAAACTAAGAATGCACAGAAAGAAGAATTGGGGAATTACTTTTGGAAAAACGATT
* * *
14815914 GATTTAAGACAATACCTAAGGAAGAATCCACCAAGACTTCACTTGTTATTCTGACTCCGAATCAG
261 GACTTAAGACAATACCTAAGGAAAAATCCACCAAG----CACTTGTTATTCTGACTCCGAACCAG
* * *
14815979 ATGATTTATTCATTTAACTTGTTCCGTAGAGATCCCTAATTTATGTTATTATCTCTATTCAAGAC
322 ACGATTTATTCATTTAACTTGTTCCGTAGAGATCCCTAAGTTATGTTATTATCCCTATTCAAGAC
* *
14816044 TAATAACGTCTAATCCCTAGATTGAATAACTGAGACTTTTCTCTAATTAACACTCTAGGGTTGCA
387 TAATAACGTCTAATCCCTAGATTGAATAACCGAAACTTTTCTCTAATTAACACTCTAGGGTTGCA
** *
14816109 TTAACTCGATCTATGGATCCCTTTATTAGGTTTCACCCTAATCCGGCAAAATCTTGTCACCCTAT
452 TTAACAAGATCTATGGATCCCCTTATTAGGTTTCACCCTAATCCGGCAAAATCTTGTCACCCTAT
14816174 GTCTAGGAGTGCAATTGATCGCAAGG
517 GTCTAGGAGTGCAATTGATCGCAAGG
*
14816200 TTTCGTGATAGGTTTTAAATATTTATAATTACTCATTCTTGAACCAACTATTATCGCGATGTAGG
1 TTTCGTGATAGGTTTTAAATATTTATAATTACTCATTCTTAAACCAACTATTATCGCGATGTAGG
*
14816265 CAAGTGTACCTATCAAACAATAGTATAGTTTTAGCAAGACTGGATTGTCGAACCCAAAGGAACTA
66 CAAGTGTACCTATCAAACAATAGTATAGTTTTAGCAAGACTGAATTGTCGAACCCAAAGGAACTA
*
14816330 AAAGTACTAGTAATGACCGTCTTTTTATTATCTAGCCTAAGAATAATGGGGTTTTATTTGTTTTA
131 AAAGTACTAGTAATGACCGTCTTTTTATTATCTAGCCTAAGAATAA-GGGG--GT-TTTGTTTTA
*
14816395 A-TGAACTAATTATCTAAACTAAGAATGCACAGAGAA-AAGAATTGGGGAATTGCTTTTGAGAAA
192 ACT-AACTAATTATCTAAACTAAGAATGCACAGA-AAGAAGAATTGGGGAATTACTTTTG-GAAA
* * * *
14816458 ATCGATTGACTTGAGATAATACCTAAGGAAAAATCCACCCAG-ACTTGTTATTCT-AGCTCCGAA
254 AACGATTGACTTAAGACAATACCTAAGGAAAAATCCACCAAGCACTTGTTATTCTGA-CTCCGAA
* *
14816521 CCGGACGATTTATTC-TTTCAACTTGTTCCGTAGAGATCTCTAAGTTATGTTATTATCCCTATTC
318 CCAGACGATTTATTCATTT-AACTTGTTCCGTAGAGATCCCTAAGTTATGTTATTATCCCTATTC
14816585 AAGACTAATAACGTCTAATCCCTAGATTGAATAACCGAAACTTTTCTCTAATTAACACTCTAGGG
382 AAGACTAATAACGTCTAATCCCTAGATTGAATAACCGAAACTTTTCTCTAATTAACACTCTAGGG
14816650 TTGCATTAACAAGATCTATGGATCCCCTTATTAGGTTTCACCCTAATCCGGCAAAATCTTGTCAC
447 TTGCATTAACAAGATCTATGGATCCCCTTATTAGGTTTCACCCTAATCCGGCAAAATCTTGTCAC
*
14816715 CCTATGTCTAGGCGTGCAAT
512 CCTATGTCTAGGAGTGCAAT
14816735 CAACTCCGCT
Statistics
Matches: 493, Mismatches: 33, Indels: 18
0.91 0.06 0.03
Matches are distributed among these distances:
545 4 0.01
546 383 0.78
547 4 0.01
549 2 0.00
550 58 0.12
551 42 0.09
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (542 bp):
TTTCGTGATAGGTTTTAAATATTTATAATTACTCATTCTTAAACCAACTATTATCGCGATGTAGG
CAAGTGTACCTATCAAACAATAGTATAGTTTTAGCAAGACTGAATTGTCGAACCCAAAGGAACTA
AAAGTACTAGTAATGACCGTCTTTTTATTATCTAGCCTAAGAATAAGGGGGTTTTGTTTTAACTA
ACTAATTATCTAAACTAAGAATGCACAGAAAGAAGAATTGGGGAATTACTTTTGGAAAAACGATT
GACTTAAGACAATACCTAAGGAAAAATCCACCAAGCACTTGTTATTCTGACTCCGAACCAGACGA
TTTATTCATTTAACTTGTTCCGTAGAGATCCCTAAGTTATGTTATTATCCCTATTCAAGACTAAT
AACGTCTAATCCCTAGATTGAATAACCGAAACTTTTCTCTAATTAACACTCTAGGGTTGCATTAA
CAAGATCTATGGATCCCCTTATTAGGTTTCACCCTAATCCGGCAAAATCTTGTCACCCTATGTCT
AGGAGTGCAATTGATCGCAAGG
Found at i:14819212 original size:5 final size:6
Alignment explanation
Indices: 14819194--14819219 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
14819184 TAAATCTTCT
14819194 AATAAA AATAAA AATAAA AATAAA AA
1 AATAAA AATAAA AATAAA AATAAA AA
14819220 GTAGTTTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AATAAA
Found at i:14829547 original size:47 final size:47
Alignment explanation
Indices: 14829496--14830000 Score: 841
Period size: 47 Copynumber: 10.7 Consensus size: 47
14829486 TTAGGATTCT
* * *
14829496 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
14829543 ATGTGATGAATGTGAAAGTGTATATATGTGATAATGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
14829590 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
14829637 ATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
14829684 GTGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
14829731 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
14829778 ATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
14829825 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
14829872 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
14829919 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
14829966 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
14830001 TCCCGAAGGG
Statistics
Matches: 432, Mismatches: 25, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
46 1 0.00
47 431 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:14830175 original size:37 final size:37
Alignment explanation
Indices: 14830119--14830197 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
14830109 CCGAGCTCTA
* * * *
14830119 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATATCCGGGT
*
14830156 AAGACCCGATAACTTCGTGTGGAGATTATATCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATATCCGGGT
14830193 AAGAC
1 AAGAC
14830198 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATATCCGGGT
Found at i:14835392 original size:20 final size:20
Alignment explanation
Indices: 14835367--14835407 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
14835357 TCTACCTGAT
14835367 TAGAGAGCATGGTGACCGAA
1 TAGAGAGCATGGTGACCGAA
14835387 TAGAGAGCATGGTGACCGAA
1 TAGAGAGCATGGTGACCGAA
14835407 T
1 T
14835408 CGACGTTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.15, G:0.34, T:0.17
Consensus pattern (20 bp):
TAGAGAGCATGGTGACCGAA
Found at i:14837606 original size:19 final size:19
Alignment explanation
Indices: 14837572--14837610 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
14837562 GATTTCATAC
*
14837572 TTTGGCCTATTTTCTCCGTT
1 TTTGGCCTAGTTTCT-CGTT
14837592 TTTGGCC-AGTTTCTCGTT
1 TTTGGCCTAGTTTCTCGTT
14837610 T
1 T
14837611 GTTTCGCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 6 0.33
20 7 0.39
ACGTcount: A:0.05, C:0.23, G:0.18, T:0.54
Consensus pattern (19 bp):
TTTGGCCTAGTTTCTCGTT
Found at i:14838982 original size:44 final size:44
Alignment explanation
Indices: 14838928--14839116 Score: 123
Period size: 44 Copynumber: 4.3 Consensus size: 44
14838918 AGTTCCGGCG
* *
14838928 GAGTATATCGAAGCTACAAATCTCTTCTCCCTGAAATTACATTA
1 GAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATTACAGTA
* * * * * * *
14838972 GAGTAAATCGAAGTTACAGACCT-TATCTCCTTGAAGTTGCAGT-
1 GAGTAGATCGAAGCTACAAATCTCT-TCTCCCTGAAATTACAGTA
* * * ** * * * * *
14839015 GGGTCAGGTTGAAATTACTAAT-TCTTATCTCCTGAAGTTCCAGCA
1 GAGT-AGATCGAAGCTACAAATCTCTTCTC-CCTGAAATTACAGTA
* * *
14839060 AAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATTACATTG
1 GAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATTACAGTA
*
14839104 GAGTAGATTGAAG
1 GAGTAGATCGAAG
14839117 TCACAAGCCC
Statistics
Matches: 104, Mismatches: 35, Indels: 12
0.69 0.23 0.08
Matches are distributed among these distances:
43 8 0.08
44 88 0.85
45 8 0.08
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.31
Consensus pattern (44 bp):
GAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATTACAGTA
Found at i:14841441 original size:14 final size:15
Alignment explanation
Indices: 14841422--14841454 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
14841412 TTAAGAAATC
*
14841422 AAAATACAAC-TTTT
1 AAAATAAAACATTTT
14841436 AAAATAAAACATTTT
1 AAAATAAAACATTTT
14841451 AAAA
1 AAAA
14841455 GGCTAGCTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (15 bp):
AAAATAAAACATTTT
Found at i:14843774 original size:15 final size:17
Alignment explanation
Indices: 14843738--14843771 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
14843728 TATACTGAAA
14843738 TTAATGTTATATTATTT
1 TTAATGTTATATTATTT
*
14843755 TTAATTTTAT-TTATTT
1 TTAATGTTATATTATTT
14843771 T
1 T
14843772 AATAATTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (17 bp):
TTAATGTTATATTATTT
Found at i:14844705 original size:9 final size:9
Alignment explanation
Indices: 14844691--14844732 Score: 75
Period size: 9 Copynumber: 4.7 Consensus size: 9
14844681 TTTTGAGTTT
*
14844691 GAATAATTC
1 GAATAACTC
14844700 GAATAACTC
1 GAATAACTC
14844709 GAATAACTC
1 GAATAACTC
14844718 GAATAACTC
1 GAATAACTC
14844727 GAATAA
1 GAATAA
14844733 ACTAAATACT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.48, C:0.17, G:0.12, T:0.24
Consensus pattern (9 bp):
GAATAACTC
Found at i:14845277 original size:18 final size:18
Alignment explanation
Indices: 14845240--14845277 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
14845230 AAAAAATCAC
*
14845240 ATTTTTTACATTTAATAT
1 ATTTTTTACATTTAAAAT
14845258 ATTTTTTA-ATTTCAAAAT
1 ATTTTTTACATTT-AAAAT
14845276 AT
1 AT
14845278 ATAGTGACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (18 bp):
ATTTTTTACATTTAAAAT
Found at i:14845318 original size:8 final size:8
Alignment explanation
Indices: 14845305--14845343 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
14845295 AAGATAATTG
*
14845305 AAGCAACT
1 AAGCAAAT
14845313 AAGCAAAT
1 AAGCAAAT
*
14845321 AAGTAAAT
1 AAGCAAAT
14845329 AAGCAAAT
1 AAGCAAAT
*
14845337 AATCAAA
1 AAGCAAA
14845344 ATAAATTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.62, C:0.13, G:0.10, T:0.15
Consensus pattern (8 bp):
AAGCAAAT
Found at i:14849390 original size:29 final size:28
Alignment explanation
Indices: 14849332--14849390 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 28
14849322 CTTTGTGATA
* *
14849332 TTTTTTTGTTGCTTGTTCTCCCAAATAT
1 TTTTTTTGTTGCTTGTTCTCCAAAAAAT
14849360 TTTTATTTGTTGCTTGTTCT-CAATAAAAT
1 TTTT-TTTGTTGCTTGTTCTCCAA-AAAAT
14849389 TT
1 TT
14849391 GATTCTTAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
28 6 0.22
29 21 0.78
ACGTcount: A:0.19, C:0.14, G:0.10, T:0.58
Consensus pattern (28 bp):
TTTTTTTGTTGCTTGTTCTCCAAAAAAT
Found at i:14851223 original size:36 final size:37
Alignment explanation
Indices: 14851151--14851228 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
14851141 TTATTACGAA
* *
14851151 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
14851188 GTCTTACCCGGACAAAATC-CCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
14851224 GTCTT
1 GTCTT
14851229 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:14851417 original size:46 final size:47
Alignment explanation
Indices: 14851346--14852236 Score: 1426
Period size: 47 Copynumber: 19.5 Consensus size: 47
14851336 GCCCTTCGGA
* * * * * *
14851346 CTTATCACATTTATACACTTTCACATCCAT-ACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
14851392 CCTGTCACATATATATACTTTCACATTCATCACATCGGCCACTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGC
14851440 CTTATTCACATATATACAC-TTCACATTCATCACATCGGCCATTAGGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14851487 C-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14851533 C-TATCACATATATATACACTTTCACA-TCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14851580 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14851627 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14851674 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14851721 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14851768 C-TATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14851813 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14851860 CTTATCAC-TATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14851906 CTTAT--C-TATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14851950 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14851997 CTTATCTCAT-TATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14852043 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14852090 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14852137 CTTATCAC-TATATACA--TTCACATTCATCACAT-----ATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14852176 CTTAT--C---T-T-CAC-TTCACATTCATCACATCGGCCATTA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14852214 CTTATCACATATATACACTTTCA
1 CTTATCACATATATACACTTTCA
14852237 TTCATTCGAT
Statistics
Matches: 797, Mismatches: 20, Indels: 56
0.91 0.02 0.06
Matches are distributed among these distances:
33 2 0.00
34 17 0.02
35 1 0.00
37 1 0.00
38 7 0.01
39 16 0.02
40 1 0.00
43 1 0.00
44 61 0.08
45 26 0.03
46 251 0.31
47 350 0.44
48 50 0.06
49 13 0.02
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:14855933 original size:39 final size:40
Alignment explanation
Indices: 14855801--14855956 Score: 199
Period size: 40 Copynumber: 3.9 Consensus size: 40
14855791 CGAATACACG
* * *
14855801 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
14855841 ACGCCAGCACGAATGCTCTTCGGGAACTTAGCCCGGATACA
1 TCACCAGCATGAATGCTCTTCGGG-ACTTAGCCCGGATACA
* *
14855882 TCACTAGC-TGAATGCTCTTCGGGACTTAG-CCAGATACA
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
14855920 TCACTAGCATGAATGCTCTTTGGGACTTAGCCCGGAT
1 TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
14855957 TTAGTAACTC
Statistics
Matches: 100, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
38 16 0.16
39 26 0.26
40 39 0.39
41 19 0.19
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TCACCAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:14855988 original size:39 final size:40
Alignment explanation
Indices: 14855931--14856073 Score: 141
Period size: 39 Copynumber: 3.6 Consensus size: 40
14855921 CACTAGCATG
*
14855931 AATGCTCTTTGGGACTTAGCCCGGATTTAGTAACTCGCACC
1 AATGC-CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACC
* * *
14855972 AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACC
** * * * *
14856011 AATGCCTTC-GGATCTTAGTTCGGATATGGTCACTTAGCA-C
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACC
14856051 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
14856074 CATCATTCAA
Statistics
Matches: 83, Mismatches: 15, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
38 2 0.02
39 48 0.58
40 24 0.29
41 9 0.11
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACC
Found at i:14856446 original size:27 final size:28
Alignment explanation
Indices: 14856374--14856450 Score: 93
Period size: 27 Copynumber: 2.7 Consensus size: 28
14856364 CTTAATAATC
*
14856374 AACCACGCACACTTAGTGCCATGTACTTTA
1 AACC-CGCACACTTAGTGCCATG-ACATTA
* *
14856404 AACTCGCACACTTAGTGCCATG-CATTC
1 AACCCGCACACTTAGTGCCATGACATTA
*
14856431 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
14856451 ATCTCACAAC
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
27 21 0.50
29 18 0.43
30 3 0.07
ACGTcount: A:0.27, C:0.34, G:0.16, T:0.23
Consensus pattern (28 bp):
AACCCGCACACTTAGTGCCATGACATTA
Found at i:14856493 original size:43 final size:43
Alignment explanation
Indices: 14856432--14856534 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
14856422 CATGCATTCA
14856432 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
14856475 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
14856518 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
14856535 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:14858328 original size:37 final size:37
Alignment explanation
Indices: 14858278--14858356 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
14858268 TTATTACGAA
* * *
14858278 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
14858315 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
14858352 GTCTT
1 GTCTT
14858357 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:14858552 original size:47 final size:47
Alignment explanation
Indices: 14858474--14859478 Score: 1614
Period size: 47 Copynumber: 21.1 Consensus size: 47
14858464 GCCCTTCGGA
* * * * * * *
14858474 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
14858521 CCTGTCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14858568 CTTATCACATATATACACTTTCGCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14858615 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14858664 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14858713 CTTATCTCATATATACACTTTCACAATCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14858760 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14858807 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14858854 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
14858901 CCCATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14858950 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14858999 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14859046 CTTATCACGTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14859095 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14859142 CTCATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14859189 CTGATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14859236 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14859283 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14859332 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14859379 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14859428 CTTATCACATATATACACTTTCACGTTCATCACATCTGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14859475 CTTA
1 CTTA
14859479 CTATCATTTC
Statistics
Matches: 902, Mismatches: 46, Indels: 20
0.93 0.05 0.02
Matches are distributed among these distances:
47 578 0.64
49 324 0.36
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:14858671 original size:96 final size:96
Alignment explanation
Indices: 14858474--14859478 Score: 1620
Period size: 96 Copynumber: 10.5 Consensus size: 96
14858464 GCCCTTCGGA
* * * * * * * * *
14858474 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGACCCTGTCACATATATAT--
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
14858537 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
14858568 CTTATCACATATATACACTTTCGCATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
14858633 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
14858664 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTC--ATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
14858727 ACACTTTCACAATCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
14858760 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT--
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
14858823 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
**
14858854 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCCATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
14858919 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
14858950 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTC--ATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
14859013 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
14859046 CTTATCACGTATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTC--ATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
14859109 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
14859142 CTCATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTGATCTC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
14859205 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
14859236 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
14859301 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
14859332 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
14859397 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
14859428 CTTATCACATATATACACTTTCACGTTCATCACATCTGCCATTAGGCCTTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
14859479 CTATCATTTC
Statistics
Matches: 863, Mismatches: 36, Indels: 22
0.94 0.04 0.02
Matches are distributed among these distances:
94 325 0.38
96 450 0.52
98 88 0.10
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:14858986 original size:286 final size:286
Alignment explanation
Indices: 14858474--14859475 Score: 1697
Period size: 286 Copynumber: 3.5 Consensus size: 286
14858464 GCCCTTCGGA
* * * * * * * * * *
14858474 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGACCCTGTCACATATATATAC
1 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
14858539 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCGCATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
14858604 GGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTAT
131 GGCCATTAGGCCCCATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTAT
14858669 CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATACACTTT
196 CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATACACTTT
*
14858734 CACAATCATCACATCGGCCATTAGGC
261 CACATTCATCACATCGGCCATTAGGC
14858760 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
14858825 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
14858890 GGCCATTAGGCCCCATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTAT
131 GGCCATTAGGCCCCATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTAT
14858955 CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATACACTTT
196 CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATACACTTT
14859020 CACATTCATCACATCGGCCATTAGGC
261 CACATTCATCACATCGGCCATTAGGC
* *
14859046 CTTATCACGTATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATAC
1 CTTATCACG--TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
* *
14859111 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACGTATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
** * *
14859176 TCGGCCATTAGGCCTGATCTC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
129 TCGGCCATTAGGCCCCATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCT
* *
14859239 ATCAC--GTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
194 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTC--ATATATACA
14859302 CTTTCACATTCATCACATCGGCCATTAGGC
257 CTTTCACATTCATCACATCGGCCATTAGGC
14859332 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT--
*
14859397 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACGTTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
14859462 TCTGCCATTAGGCC
129 TCGGCCATTAGGCC
14859476 TTACTATCAT
Statistics
Matches: 681, Mismatches: 29, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
284 97 0.14
286 451 0.66
288 133 0.20
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (286 bp):
CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCCCATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTAT
CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATACACTTT
CACATTCATCACATCGGCCATTAGGC
Found at i:14863314 original size:26 final size:25
Alignment explanation
Indices: 14863255--14863314 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 25
14863245 ATATTCTATC
*
14863255 TAGTTTTA--ATTTTAATCCTTACT
1 TAGTTTTATTATTTTAATCCTTAAT
14863278 TA-TTATCTATTATTTTAATCCTTAAT
1 TAGTT-T-TATTATTTTAATCCTTAAT
14863304 TCAGTTTTATT
1 T-AGTTTTATT
14863315 CCTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
22 2 0.07
23 3 0.10
24 2 0.07
26 19 0.63
27 2 0.07
28 2 0.07
ACGTcount: A:0.27, C:0.12, G:0.03, T:0.58
Consensus pattern (25 bp):
TAGTTTTATTATTTTAATCCTTAAT
Found at i:14863472 original size:17 final size:17
Alignment explanation
Indices: 14863460--14863498 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
14863450 AGTATTCTTT
14863460 TTAATTATATATTATTA
1 TTAATTATATATTATTA
*
14863477 TTACTTATATATATATATA
1 TTAATTATATAT-TAT-TA
14863496 TTA
1 TTA
14863499 TTTTCCTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 11 0.58
18 3 0.16
19 5 0.26
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (17 bp):
TTAATTATATATTATTA
Found at i:14863497 original size:19 final size:17
Alignment explanation
Indices: 14863464--14863498 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 17
14863454 TTCTTTTTAA
14863464 TTATATATTATTATTAC
1 TTATATATTATTATTAC
14863481 TTATATATATATATATTA
1 TTATATAT-TAT-TATTA
14863499 TTTTCCTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 3 0.19
19 5 0.31
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (17 bp):
TTATATATTATTATTAC
Found at i:14863559 original size:17 final size:18
Alignment explanation
Indices: 14863527--14863563 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
14863517 TTTACATCTC
*
14863527 TTTCATATATTATTATAT
1 TTTCACATATTATTATAT
14863545 TTTCACATA-TATTATAT
1 TTTCACATATTATTATAT
14863562 TT
1 TT
14863564 ATTAATTACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.59
Consensus pattern (18 bp):
TTTCACATATTATTATAT
Found at i:14863581 original size:46 final size:48
Alignment explanation
Indices: 14863462--14863582 Score: 125
Period size: 46 Copynumber: 2.6 Consensus size: 48
14863452 TATTCTTTTT
*
14863462 AATTATATATTATT-ATTACTTATATATA-TATATATTATTTTCCTTA
1 AATTATATATTATTAATTACTTATATATATTATATATTATTTTCCATA
14863508 AATTAT-TATT-TTACATCT-CTT-TCATATATTAT-TA-TATTTTCACATA
1 AATTATATATTATTA-AT-TACTTAT-ATATATTATATATTATTTTC-CATA
*
14863554 TATTATAT-TTATTAATTACTTATATATAT
1 AATTATATATTATTAATTACTTATATATAT
14863583 ATTGTTTATA
Statistics
Matches: 63, Mismatches: 2, Indels: 20
0.74 0.02 0.24
Matches are distributed among these distances:
44 2 0.03
45 13 0.21
46 39 0.62
47 9 0.14
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (48 bp):
AATTATATATTATTAATTACTTATATATATTATATATTATTTTCCATA
Found at i:14863617 original size:26 final size:22
Alignment explanation
Indices: 14863463--14863628 Score: 74
Period size: 23 Copynumber: 7.1 Consensus size: 22
14863453 ATTCTTTTTA
14863463 ATTATA-TATTATTATTACTTAT
1 ATTATATTATTA-TATTACTTAT
* * *
14863485 ATATATATATATTATTTTCCTTAA
1 AT-TATAT-TATTATATTACTTAT
*
14863509 ATTATTATT-TTACATCT-CTT-T
1 ATTA-TATTATTATAT-TACTTAT
*
14863530 CA-TATATTATTATATTTTCACATAT
1 -ATTATATTATTATA--TT-ACTTAT
14863555 ATTATATTTATTA-ATTACTTAT
1 ATTATA-TTATTATATTACTTAT
*
14863577 ATATATATTGTTTATACGTTACTTTAT
1 AT-TATATT-ATTATA--TTAC-TTAT
* *
14863604 ATTATATCTATTATTTTTCTTAT
1 ATTATAT-TATTATATTACTTAT
14863627 AT
1 AT
14863629 GTTTATATTA
Statistics
Matches: 110, Mismatches: 13, Indels: 41
0.67 0.08 0.25
Matches are distributed among these distances:
20 4 0.04
21 6 0.05
22 20 0.18
23 24 0.22
24 19 0.17
25 11 0.10
26 19 0.17
27 7 0.06
ACGTcount: A:0.33, C:0.08, G:0.01, T:0.58
Consensus pattern (22 bp):
ATTATATTATTATATTACTTAT
Found at i:14863681 original size:21 final size:20
Alignment explanation
Indices: 14863657--14863706 Score: 50
Period size: 19 Copynumber: 2.5 Consensus size: 20
14863647 TATATAATCT
*
14863657 TTATTATGTTTTATTTTTATA
1 TTATTATGTTGT-TTTTTATA
*
14863678 TTATT-TATTGTTTTTTATA
1 TTATTATGTTGTTTTTTATA
14863697 -TATATATGTT
1 TTAT-TATGTT
14863707 ACGTATATCA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
18 3 0.12
19 9 0.38
20 7 0.29
21 5 0.21
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.70
Consensus pattern (20 bp):
TTATTATGTTGTTTTTTATA
Found at i:14863702 original size:25 final size:24
Alignment explanation
Indices: 14863601--14863703 Score: 66
Period size: 25 Copynumber: 4.2 Consensus size: 24
14863591 TACGTTACTT
*
14863601 TATATTATATCTATTAT-TTTTCTTA
1 TATATTAT-T-TATTATGTTTTATTA
* * **
14863626 TATGTT-TATATTACATTTTATTA
1 TATATTATTTATTATGTTTTATTA
* * *
14863649 TATAATCTTTATTATGTTTTATTTT
1 TATATTATTTATTATGTTTTA-TTA
* *
14863674 TATATTATTTATTGTTTTTTATATA
1 TATATTATTTATTATGTTTTAT-TA
14863699 TATAT
1 TATAT
14863704 GTTACGTATA
Statistics
Matches: 59, Mismatches: 15, Indels: 8
0.72 0.18 0.10
Matches are distributed among these distances:
22 5 0.08
23 11 0.19
24 13 0.22
25 30 0.51
ACGTcount: A:0.28, C:0.04, G:0.03, T:0.65
Consensus pattern (24 bp):
TATATTATTTATTATGTTTTATTA
Found at i:14863769 original size:17 final size:15
Alignment explanation
Indices: 14863727--14863770 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 15
14863717 TGTATCACAA
14863727 ATTATATTATTTTAT
1 ATTATATTATTTTAT
*
14863742 ATCTCTATTATTTTAT
1 AT-TATATTATTTTAT
14863758 GATTATTATTATT
1 -ATTA-TATTATT
14863771 AAATCATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 2 0.08
16 13 0.54
17 9 0.38
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.64
Consensus pattern (15 bp):
ATTATATTATTTTAT
Found at i:14864255 original size:16 final size:17
Alignment explanation
Indices: 14864234--14864267 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
14864224 ATTTTTTTTG
*
14864234 CTTTATA-TGTATTATT
1 CTTTATATTGTAGTATT
14864250 CTTTATATTGTAGTATT
1 CTTTATATTGTAGTATT
14864267 C
1 C
14864268 ATTTTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.24, C:0.09, G:0.09, T:0.59
Consensus pattern (17 bp):
CTTTATATTGTAGTATT
Found at i:14869542 original size:14 final size:14
Alignment explanation
Indices: 14869513--14869565 Score: 51
Period size: 14 Copynumber: 3.9 Consensus size: 14
14869503 TTTCAAAAAA
14869513 AAAAAG-AAAA-AG
1 AAAAAGAAAAAGAG
14869525 -AAAAGAAAAAGAG
1 AAAAAGAAAAAGAG
*
14869538 AAAAA-AGTAAAGAG
1 AAAAAGA-AAAAGAG
14869552 AAAAAAGAAAAAGA
1 -AAAAAGAAAAAGA
14869566 TGGAGAGGCC
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
11 5 0.15
12 4 0.12
13 3 0.09
14 10 0.30
15 10 0.30
16 1 0.03
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.02
Consensus pattern (14 bp):
AAAAAGAAAAAGAG
Found at i:14870470 original size:44 final size:44
Alignment explanation
Indices: 14870419--14870612 Score: 180
Period size: 44 Copynumber: 4.4 Consensus size: 44
14870409 TGGACAATGT
* *
14870419 AGATCAAAGA-AACAAGATTTGGCATCCCTATGTTTATAGGGAAC
1 AGATCGAAGATAAC-AGATTTGGCATCCCTGTGTTTATAGGGAAC
* ** * * * * *
14870463 AGATCAAAGATAGTAGATCTGACATTCCTGTGTTTACAGTGAAGC
1 AGATCGAAGATAACAGATTTGGCATCCCTGTGTTTATAGGGAA-C
* **
14870508 AGATTGAAGATTTCAGCA--TGGCATCCCTGTGTTTATAGGGAAC
1 AGATCGAAGATAACAG-ATTTGGCATCCCTGTGTTTATAGGGAAC
* *
14870551 A-AGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAAC
1 AGA-TCGAAGATAACAGATTTGGCATCCCTGTGTTTATAGGGAAC
*
14870595 AGATCGAAGATAGCAGAT
1 AGATCGAAGATAACAGAT
14870613 CTAACCTTCA
Statistics
Matches: 123, Mismatches: 20, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
42 2 0.02
43 13 0.11
44 93 0.76
45 14 0.11
46 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (44 bp):
AGATCGAAGATAACAGATTTGGCATCCCTGTGTTTATAGGGAAC
Found at i:14871197 original size:119 final size:119
Alignment explanation
Indices: 14870604--14871185 Score: 1002
Period size: 119 Copynumber: 4.9 Consensus size: 119
14870594 CAGATCGAAG
14870604 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* *
14870669 TTACAAGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTCTCAAAG
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
14870723 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* *
14870788 TTACAAGGAATAAATCGAGGACATAGCAGATTTGACTCTCAGGCGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* * * *
14870842 ATAGTAGATCTAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATAATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
*
14870907 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* *
14870961 ATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* *
14871026 TTACAAGAAACAAATCAAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* * *
14871080 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGC
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* *
14871145 TTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
14871186 AATATTCTCA
Statistics
Matches: 436, Mismatches: 27, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
119 436 1.00
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (119 bp):
ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
Found at i:14871260 original size:83 final size:83
Alignment explanation
Indices: 14871121--14871469 Score: 506
Period size: 83 Copynumber: 4.2 Consensus size: 83
14871111 GAAGCAGATC
14871121 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
14871186 AATATTCTCAAACAGACT
66 AATATTCTCAAACAGACT
* *
14871204 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATTGAGGATATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
*
14871269 AATGTTCTCAAACAGACT
66 AATATTCTCAAACAGACT
* * * *
14871287 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAAGCGAGGACCTTGCAGACATGACTTTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
*
14871352 AATGTTCTCAAACAGACT
66 AATATTCTCAAACAGACT
* * ** *
14871370 CAAGATGGTTTAGGCATCCTTGTGCTTACAAAGGAAAAAAAT-GAGGACGTAACAGATATGATTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTAC-AAGG-AACAAATCGAGGACATTGCAGATATGACTC
*
14871434 TCAAA-AGTTCTCAAATAGA-T
63 TCAAATA-TTCTCAAACAGACT
*
14871454 CAAGATGATTTGGCAT
1 CAAGATGGTTTGGCAT
14871470 ATCTACAAAT
Statistics
Matches: 242, Mismatches: 20, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
83 173 0.71
84 28 0.12
85 36 0.15
86 5 0.02
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATATTCTCAAACAGACT
Found at i:14873094 original size:26 final size:25
Alignment explanation
Indices: 14873035--14873094 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 25
14873025 ATATTCTATC
*
14873035 TAGTTTTA--ATTTTAATCCTTACT
1 TAGTTTTATTATTTTAATCCTTAAT
14873058 TA-TTATCTATTATTTTAATCCTTAAT
1 TAGTT-T-TATTATTTTAATCCTTAAT
14873084 TCAGTTTTATT
1 T-AGTTTTATT
14873095 CCTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
22 2 0.07
23 3 0.10
24 2 0.07
26 19 0.63
27 2 0.07
28 2 0.07
ACGTcount: A:0.27, C:0.12, G:0.03, T:0.58
Consensus pattern (25 bp):
TAGTTTTATTATTTTAATCCTTAAT
Found at i:14873338 original size:17 final size:18
Alignment explanation
Indices: 14873306--14873342 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
14873296 TTTACATCTC
*
14873306 TTTCATATATTATTATAT
1 TTTCACATATTATTATAT
14873324 TTTCACATA-TATTATAT
1 TTTCACATATTATTATAT
14873341 TT
1 TT
14873343 ATTAATTACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.59
Consensus pattern (18 bp):
TTTCACATATTATTATAT
Found at i:14873439 original size:18 final size:18
Alignment explanation
Indices: 14873416--14873454 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
14873406 ATATAATCTT
14873416 TATTATGTT-TTATTTTTA
1 TATTAT-TTATTATTTTTA
*
14873434 TATTATTTATTGTTTTTA
1 TATTATTTATTATTTTTA
14873452 TAT
1 TAT
14873455 ATATATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 2 0.11
18 17 0.89
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (18 bp):
TATTATTTATTATTTTTA
Found at i:14873465 original size:25 final size:24
Alignment explanation
Indices: 14873381--14873465 Score: 77
Period size: 23 Copynumber: 3.5 Consensus size: 24
14873371 ATACGTTACT
* *
14873381 TTATAT-TATATCTATTATTTTTC
1 TTATATATATATTTATTATTTTTA
*
14873404 TTATATA-ATCTTTATTATGTTTTA
1 TTATATATATATTTATTAT-TTTTA
* *
14873428 TT-TTTATATTATTTATTGTTTTTA
1 TTATATATA-TATTTATTATTTTTA
14873452 TATATATATATATT
1 T-TATATATATATT
14873466 ACGTATATCA
Statistics
Matches: 49, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
23 18 0.37
24 13 0.27
25 13 0.27
26 5 0.10
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (24 bp):
TTATATATATATTTATTATTTTTA
Found at i:14873513 original size:16 final size:16
Alignment explanation
Indices: 14873486--14873529 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
14873476 TGTATCGCAA
*
14873486 ATTATATCATTTTAT-
1 ATTATATTATTTTATG
14873501 ATCTATATTATTTTATG
1 AT-TATATTATTTTATG
14873518 ATTATTATTATT
1 ATTA-TATTATT
14873530 AAATCATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 2 0.08
16 14 0.56
17 9 0.36
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (16 bp):
ATTATATTATTTTATG
Found at i:14874016 original size:16 final size:17
Alignment explanation
Indices: 14873995--14874028 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
14873985 TTTTTTTTTG
*
14873995 CTTTATAT-GTATTATT
1 CTTTATATCGTAGTATT
14874011 CTTTATATCGTAGTATT
1 CTTTATATCGTAGTATT
14874028 C
1 C
14874029 ATTTTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.24, C:0.12, G:0.09, T:0.56
Consensus pattern (17 bp):
CTTTATATCGTAGTATT
Found at i:14876689 original size:47 final size:47
Alignment explanation
Indices: 14876620--14876713 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
14876610 AGTATTAAAG
14876620 ACAAAAGCTTAGCCATTTTCGCATGGATTATATACACAACCAAAATC
1 ACAAAAGCTTAGCCATTTTCGCATGGATTATATACACAACCAAAATC
*
14876667 ACAAAAGCTTAGCCATTTTCGCATGGCTTATATACACAACCAAAATC
1 ACAAAAGCTTAGCCATTTTCGCATGGATTATATACACAACCAAAATC
14876714 CAGCATTTTC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.39, C:0.24, G:0.11, T:0.26
Consensus pattern (47 bp):
ACAAAAGCTTAGCCATTTTCGCATGGATTATATACACAACCAAAATC
Found at i:14879725 original size:19 final size:19
Alignment explanation
Indices: 14879701--14879779 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
14879691 AATCTTTAAG
*
14879701 GATATGCAATTTTAGATAT
1 GATATGCAATCTTAGATAT
14879720 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14879739 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14879756 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
14879777 GAT
1 GAT
14879780 CTTGTAATCT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
17 17 0.31
19 29 0.53
21 9 0.16
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:14879731 original size:36 final size:36
Alignment explanation
Indices: 14879691--14879778 Score: 110
Period size: 36 Copynumber: 2.4 Consensus size: 36
14879681 ATGGAAATAT
*
14879691 AATCTTTAAGGATATG-CAATTTTAGATATGATATGC
1 AATCTTTAA-GATATGACAATCTTAGATATGATATGC
14879727 AATC-TT-AGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAAGATATG--ACAATCTTAGATATGATATGC
*
14879763 AATCTTGAAGATATGA
1 AATCTTTAAGATATGA
14879779 TCTTGTAATC
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
33 6 0.13
34 1 0.02
35 2 0.04
36 28 0.62
37 1 0.02
38 7 0.16
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (36 bp):
AATCTTTAAGATATGACAATCTTAGATATGATATGC
Found at i:14879737 original size:14 final size:15
Alignment explanation
Indices: 14879720--14879757 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
14879710 TTTTAGATAT
14879720 GATATG-CAATCTTA
1 GATATGACAATCTTA
14879734 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
14879751 GATATGA
1 GATATGA
14879758 TATGCAATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.29
15 1 0.05
17 14 0.67
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:14884752 original size:37 final size:37
Alignment explanation
Indices: 14884696--14884798 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
14884686 CGAATAGTCC
*
14884696 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
14884733 CCACACGTAGTCATTGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
14884770 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
14884799 ATATATTTCC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:14885000 original size:48 final size:48
Alignment explanation
Indices: 14884939--14885171 Score: 430
Period size: 48 Copynumber: 4.9 Consensus size: 48
14884929 ATATACACAC
* *
14884939 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACGACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
14884987 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
14885035 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
14885083 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
14885131 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
14885172 CACATATATA
Statistics
Matches: 180, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 180 1.00
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:14885456 original size:48 final size:48
Alignment explanation
Indices: 14885400--14885588 Score: 351
Period size: 48 Copynumber: 3.9 Consensus size: 48
14885390 GAATTTTATC
* *
14885400 ACATATCTCATATATATTTCACACTAGCCACTCGGCTTTACCACATAT
1 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
14885448 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
14885496 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
*
14885544 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
1 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
14885589 CACATATATA
Statistics
Matches: 138, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 138 1.00
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.33
Consensus pattern (48 bp):
ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
Found at i:14885762 original size:417 final size:418
Alignment explanation
Indices: 14884983--14885815 Score: 1623
Period size: 417 Copynumber: 2.0 Consensus size: 418
14884973 TACGACATAT
*
14884983 ACATATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 ACATATCTCATATATATTTCACACTAGCCACTCGGCTTTACCACATATACATATCTCATACATAT
14885048 TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCG
66 TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCG
14885113 GCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACACACATA
131 GCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACACACATA
14885178 TATATTTATCTTGTACATCAATTTCAGCAATAGCTTATAAGCAACTCAAATAGTTTCATCAATGT
196 TATATTTATCTTGTACATCAATTTCAGCAATAGCTTATAAGCAACTCAAATAGTTTCATCAATGT
*
14885243 TTACAACAAATTCACATATTCACTACAAGCTGTTTTCCTGAGCAATAGTCACTAAATTATTTATA
261 TTACAACAAATTCACATATTCACTACAAGCTGTTTTCCTGAGCAAGAGTCACTAAATTATTTATA
14885308 ACTGGAGCTACAAAACTCAAAATCAATTGCCGTTAATTTTCCCTGAATATAGACTCATATATCAT
326 ACTGGAGCTACAAAACTCAAAATCAATTGCCGTTAATTTTCCCTGAATATAGACTCATATATCAT
14885373 CCATCCATAAAA-TTTCAGAATTTTATC
391 CCATCCATAAAATTTTCAGAATTTTATC
14885400 ACATATCTCATATATATTTCACACTAGCCACTCGGCTTTACCACATATACATATCTCATACATAT
1 ACATATCTCATATATATTTCACACTAGCCACTCGGCTTTACCACATATACATATCTCATACATAT
14885465 TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCG
66 TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCG
14885530 GCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACACACATA
131 GCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACACACATA
14885595 TATATTTATCTTGTACATCAATTTCAGCAATAGCTTATAAGCAACTCAAATAGTTTCATCAATGT
196 TATATTTATCTTGTACATCAATTTCAGCAATAGCTTATAAGCAACTCAAATAGTTTCATCAATGT
14885660 TTACAACAAATTCACATATTCACTACAAGCTGTTTTCCTGAGCAAGAGTCACTAAATTATTTATA
261 TTACAACAAATTCACATATTCACTACAAGCTGTTTTCCTGAGCAAGAGTCACTAAATTATTTATA
* *
14885725 ACTGGAGCTACAAAACTCAAAATTAATTGCTGTTAATTTTCCCTGAATATAGACTCATATATCAT
326 ACTGGAGCTACAAAACTCAAAATCAATTGCCGTTAATTTTCCCTGAATATAGACTCATATATCAT
14885790 CCATCCATAAAATTTTCAGAATTTTA
391 CCATCCATAAAATTTTCAGAATTTTA
14885816 GGTTTGGCCA
Statistics
Matches: 411, Mismatches: 4, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
417 398 0.97
418 13 0.03
ACGTcount: A:0.34, C:0.24, G:0.08, T:0.34
Consensus pattern (418 bp):
ACATATCTCATATATATTTCACACTAGCCACTCGGCTTTACCACATATACATATCTCATACATAT
TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCG
GCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACACACATA
TATATTTATCTTGTACATCAATTTCAGCAATAGCTTATAAGCAACTCAAATAGTTTCATCAATGT
TTACAACAAATTCACATATTCACTACAAGCTGTTTTCCTGAGCAAGAGTCACTAAATTATTTATA
ACTGGAGCTACAAAACTCAAAATCAATTGCCGTTAATTTTCCCTGAATATAGACTCATATATCAT
CCATCCATAAAATTTTCAGAATTTTATC
Found at i:14886001 original size:38 final size:38
Alignment explanation
Indices: 14885945--14886026 Score: 155
Period size: 38 Copynumber: 2.2 Consensus size: 38
14885935 ATTTGATTTC
*
14885945 ATTTGAAACTAGACTCATTAAGGAGTCTAATCATATAA
1 ATTTTAAACTAGACTCATTAAGGAGTCTAATCATATAA
14885983 ATTTTAAACTAGACTCATTAAGGAGTCTAATCATATAA
1 ATTTTAAACTAGACTCATTAAGGAGTCTAATCATATAA
14886021 ATTTTA
1 ATTTTA
14886027 TCTTATAAAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.35
Consensus pattern (38 bp):
ATTTTAAACTAGACTCATTAAGGAGTCTAATCATATAA
Found at i:14895247 original size:44 final size:44
Alignment explanation
Indices: 14895167--14895329 Score: 213
Period size: 44 Copynumber: 3.7 Consensus size: 44
14895157 AACCAGGACC
14895167 TTTAGCGGCGCTTTTAT-AAAAAATGCCGCTATAGACCTGTACT
1 TTTAGCGGCGCTTTTATAAAAAAATGCCGCTATAGACCTGTACT
* * * * * *
14895210 TTTAGCGGTGCTTTTATAAAAAAATGCCACTAAAGACCAGGACC
1 TTTAGCGGCGCTTTTATAAAAAAATGCCGCTATAGACCTGTACT
*
14895254 TTTAGCGGCGCTTTTATAAAAAAAATGTCGCTATAGACCTGTACT
1 TTTAGCGGCGCTTTTAT-AAAAAAATGCCGCTATAGACCTGTACT
* * *
14895299 TTTAGCGGCACTTTT-TTAAAAAACGCCGCTA
1 TTTAGCGGCGCTTTTATAAAAAAATGCCGCTA
14895330 ATTTGCCCAG
Statistics
Matches: 101, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
43 28 0.28
44 38 0.38
45 35 0.35
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (44 bp):
TTTAGCGGCGCTTTTATAAAAAAATGCCGCTATAGACCTGTACT
Found at i:14895313 original size:89 final size:87
Alignment explanation
Indices: 14895158--14895321 Score: 274
Period size: 89 Copynumber: 1.9 Consensus size: 87
14895148 TGAGCTAGAA
**
14895158 ACCAGGACCTTTAGCGGCGCTTTTATAAAAAATGCCGCTATAGACCTGTACTTTTAGCGGTGCTT
1 ACCAGGACCTTTAGCGGCGCTTTTATAAAAAATGCCGCTATAGACCTGTACTTTTAGCGGCACTT
14895223 TTATAAAAAAATGCCACTAAAG
66 TTATAAAAAAATGCCACTAAAG
*
14895245 ACCAGGACCTTTAGCGGCGCTTTTATAAAAAAAATGTCGCTATAGACCTGTACTTTTAGCGGCAC
1 ACCAGGACCTTTAGCGGCGCTTTTAT--AAAAAATGCCGCTATAGACCTGTACTTTTAGCGGCAC
*
14895310 TTTTTTAAAAAA
64 TTTTATAAAAAA
14895322 CGCCGCTAAT
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
87 26 0.37
89 45 0.63
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (87 bp):
ACCAGGACCTTTAGCGGCGCTTTTATAAAAAATGCCGCTATAGACCTGTACTTTTAGCGGCACTT
TTATAAAAAAATGCCACTAAAG
Found at i:14895658 original size:21 final size:21
Alignment explanation
Indices: 14895629--14895676 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
14895619 TCCTGTTCTG
*
14895629 CTCCACCTCCCTCGCTGCTAC
1 CTCCGCCTCCCTCGCTGCTAC
*
14895650 CTCCGCCTCCCTCGCTGCTCC
1 CTCCGCCTCCCTCGCTGCTAC
14895671 CTCCGC
1 CTCCGC
14895677 TCTAAGTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.04, C:0.60, G:0.12, T:0.23
Consensus pattern (21 bp):
CTCCGCCTCCCTCGCTGCTAC
Found at i:14896264 original size:18 final size:18
Alignment explanation
Indices: 14896232--14896269 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
14896222 TACAATATAG
14896232 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTA-TTAA
*
14896251 TAGTAAAAA-GTTATTAA
1 TAGTAAAAATATTATTAA
14896268 TA
1 TA
14896270 CTTGATAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TAGTAAAAATATTATTAA
Found at i:14900042 original size:26 final size:26
Alignment explanation
Indices: 14900013--14900146 Score: 223
Period size: 26 Copynumber: 5.2 Consensus size: 26
14900003 TGGTACAAAT
14900013 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
14900039 TGATAATGGATTAGGTAAATATTCAA
1 TGATAATGGGTTAGGTAAATGTTCCA
14900065 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
14900091 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
14900117 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14900143 TGAT
1 TGAT
14900147 GGGCATTTCA
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 101 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:14905839 original size:26 final size:26
Alignment explanation
Indices: 14905810--14905969 Score: 257
Period size: 26 Copynumber: 6.2 Consensus size: 26
14905800 TGGTACAAAT
14905810 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
14905836 TGATAATGGATTAGGTAAATATTCAA
1 TGATAATGGGTTAGGTAAATGTTCCA
14905862 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
14905888 TGATAATGGATTAGGTAAGTATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14905914 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
14905940 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14905966 TGAT
1 TGAT
14905970 GGGCATTTCA
Statistics
Matches: 121, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 121 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:14905872 original size:52 final size:52
Alignment explanation
Indices: 14905810--14905969 Score: 284
Period size: 52 Copynumber: 3.1 Consensus size: 52
14905800 TGGTACAAAT
*
14905810 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCAA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
*
14905862 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAGTATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* *
14905914 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
14905966 TGAT
1 TGAT
14905970 GGGCATTTCA
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 103 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:14909439 original size:462 final size:465
Alignment explanation
Indices: 14908217--14909454 Score: 2308
Period size: 465 Copynumber: 2.7 Consensus size: 465
14908207 ATTAAACAAC
*
14908217 TTTAAAAATATTAAATATTAAAATCAAACATTATTAATATAACAAAATAGTAATTTGAATATAAT
1 TTTAAAAATATTAAATATTAAAATCACACATTATTAATATAACAAAATAGTAATTTGAATATAAT
14908282 AATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAA
66 AATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAA
*
14908347 ATATTCAATAGCGAT-GAACTTTTTTCAATTCTTCTTGAATTTTTTAAGATTCATCATACGTGGC
131 ATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCATCATACGTGGC
14908411 GTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTC
196 GTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTC
* *
14908476 CAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGTAAGCTACATAAAT
261 CAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAGCTACATAAAC
14908541 GGTAATAAAATTAATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAACCAAAATATAAAA
326 GGTAATAAAATTAATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAACCAAAATAT--AA
14908606 ACTTATTCATACTTATTCATACTTCAAATAATAATTAATACTATTTTGATAAAAAATATTTATAA
389 ACTTATTCATACTTATTCATACTTCAAATAATAATTAATACTATTTTGATAAAAAATATTTATAA
14908671 CTTTTAAAGACA
454 CTTTTAAAGACA
*
14908683 TTTAAAAATATTAAATATTAAAATCACACATTATTAATATAACAAAATAGTCATTTGAATATAAT
1 TTTAAAAATATTAAATATTAAAATCACACATTATTAATATAACAAAATAGTAATTTGAATATAAT
*
14908748 AATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTAGAAATAAATTAAGGTTATAT-A
66 AATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAA
*
14908812 ATATTCAATAGTGATAGAA-TTTTTTCAATTCTTTTTGAATTTTTTAAGATTCATCATACGTGGC
131 ATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCATCATACGTGGC
*
14908876 GGTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTC
196 GTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTC
*
14908941 CAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAGCTACATATAC
261 CAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAGCTACATAAAC
14909006 GGTAAT-AAATTAATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAACCAAAATAT-AAC
326 GGTAATAAAATTAATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAACCAAAATATAAAC
*
14909069 TTATTCATACTTATTCATACTTCAAATAATAATTAATACTATTTTGATAAAAATTATTTATAACT
391 TTATTCATACTTATTCATACTTCAAATAATAATTAATACTATTTTGATAAAAAATATTTATAACT
14909134 TTTAAAGACA
456 TTTAAAGACA
14909144 TTTAAAAATATTAAATATTAAAATCACACATT-TTAATATAACAAAATAGTAATTTGAATATAAT
1 TTTAAAAATATTAAATATTAAAATCACACATTATTAATATAACAAAATAGTAATTTGAATATAAT
14909208 AATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAA
66 AATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAA
* *
14909273 ATATTCAATAGCGATAGAACTTTTTTTAATTCTTTTTGAATTTTTTAAGATTCATCATACATGGC
131 ATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCATCATACGTGGC
14909338 GTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTC
196 GTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTC
14909403 CAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGC
261 CAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGC
14909455 TCAGCTATTG
Statistics
Matches: 753, Mismatches: 16, Indels: 10
0.97 0.02 0.01
Matches are distributed among these distances:
460 93 0.12
461 128 0.17
462 159 0.21
464 54 0.07
465 191 0.25
466 128 0.17
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.36
Consensus pattern (465 bp):
TTTAAAAATATTAAATATTAAAATCACACATTATTAATATAACAAAATAGTAATTTGAATATAAT
AATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAA
ATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCATCATACGTGGC
GTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTC
CAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAGCTACATAAAC
GGTAATAAAATTAATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAACCAAAATATAAAC
TTATTCATACTTATTCATACTTCAAATAATAATTAATACTATTTTGATAAAAAATATTTATAACT
TTTAAAGACA
Found at i:14911459 original size:23 final size:23
Alignment explanation
Indices: 14911432--14911478 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
14911422 CAGCAATTTG
14911432 GTATAACATTAACAGGAGAAATA
1 GTATAACATTAACAGGAGAAATA
*
14911455 GTATACCATTAACAGGAGAAATA
1 GTATAACATTAACAGGAGAAATA
14911478 G
1 G
14911479 GACCAAGCTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.49, C:0.11, G:0.19, T:0.21
Consensus pattern (23 bp):
GTATAACATTAACAGGAGAAATA
Found at i:14914112 original size:25 final size:25
Alignment explanation
Indices: 14914084--14914135 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
14914074 TTTCTAGCTA
14914084 ATAGTTCAACAAATGCTAATTCCAC
1 ATAGTTCAACAAATGCTAATTCCAC
*
14914109 ATAGTTTAACAAATGCTAATTCCAC
1 ATAGTTCAACAAATGCTAATTCCAC
14914134 AT
1 AT
14914136 TCAAAATTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (25 bp):
ATAGTTCAACAAATGCTAATTCCAC
Found at i:14914335 original size:36 final size:38
Alignment explanation
Indices: 14914294--14914369 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 38
14914284 CTTCAAATAC
* * *
14914294 TAGTTAACTCCTAAACC-G-TAAATCTTAAACCATATA
1 TAGTTAACTCATAAACCTGCTAAACCCTAAACCATATA
14914330 TAGTTAACTCATAAACCTGCTTAAACCCTAAACCATATA
1 TAGTTAACTCATAAACCTGC-TAAACCCTAAACCATATA
14914369 T
1 T
14914370 CTTAAACTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 16 0.47
37 1 0.03
39 17 0.50
ACGTcount: A:0.41, C:0.24, G:0.05, T:0.30
Consensus pattern (38 bp):
TAGTTAACTCATAAACCTGCTAAACCCTAAACCATATA
Found at i:14914594 original size:41 final size:41
Alignment explanation
Indices: 14914549--14914849 Score: 390
Period size: 41 Copynumber: 7.4 Consensus size: 41
14914539 GTTCTATGAC
* *
14914549 TTTTAGCGGCATTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
*
14914590 TTTTAGCGGCGTTTTACCGAAAGCGCCACTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
*
14914631 TTTTAGCGGCGTTTTACCGAAAGCCCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
**
14914672 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTATT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
* * *
14914713 TTTTAGTGGCATTTTACCCAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
* * * * *
14914754 TTTTAGCGGCGTTTTACCTAAAGTGCCACTAATGATC-AGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
*** ** **
14914794 TTTTAGCGGCGTTTTAGTAAAAAATGCCGCTGTTGCTCT-GT
1 TTTTAGCGGCGTTTTA-CCGAAAGCGCCGCTAATGCTCTGGT
14914835 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
14914850 TCTTAAAATG
Statistics
Matches: 230, Mismatches: 28, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
40 18 0.08
41 212 0.92
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.35
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
Found at i:14914921 original size:12 final size:12
Alignment explanation
Indices: 14914904--14914929 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14914894 GTTTGTTGAT
14914904 AAAACGCCGCTA
1 AAAACGCCGCTA
14914916 AAAACGCCGCTA
1 AAAACGCCGCTA
14914928 AA
1 AA
14914930 GCCCTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:14923106 original size:13 final size:13
Alignment explanation
Indices: 14923088--14923112 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14923078 AACAAAGCTA
14923088 GACACGGCCGTGC
1 GACACGGCCGTGC
14923101 GACACGGCCGTG
1 GACACGGCCGTG
14923113 TGAACCCACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.36, G:0.40, T:0.08
Consensus pattern (13 bp):
GACACGGCCGTGC
Found at i:14926196 original size:149 final size:149
Alignment explanation
Indices: 14925926--14926226 Score: 575
Period size: 149 Copynumber: 2.0 Consensus size: 149
14925916 CCTTTAACCC
14925926 ATTATTATTGAAATTCCCTAAATTAATCCCTATTTTTGTCGAGATTTGAGTTGAATGGATTGCTT
1 ATTATTATTGAAATTCCCTAAATTAATCCCTATTTTTGTCGAGATTTGAGTTGAATGGATTGCTT
* *
14925991 AGCTATGTTTTGTTCTTAATAGTTATTCTATATTATTTTAACTTGTTTTTAAAAAAAACTATGTA
66 AGCTATGTTTTGTTCTTAATAGTTAGTCTATATTATTTTAACTTGTTCTTAAAAAAAACTATGTA
14926056 TACATATCTGTAATTTCAT
131 TACATATCTGTAATTTCAT
*
14926075 ATTATTGTTGAAATTCCCTAAATTAATCCCTATTTTTGTCGAGATTTGAGTTGAATGGATTGCTT
1 ATTATTATTGAAATTCCCTAAATTAATCCCTATTTTTGTCGAGATTTGAGTTGAATGGATTGCTT
14926140 AGCTATGTTTTGTTCTTAATAGTTAGTCTATATTATTTTAACTTGTTCTTAAAAAAAACTATGTA
66 AGCTATGTTTTGTTCTTAATAGTTAGTCTATATTATTTTAACTTGTTCTTAAAAAAAACTATGTA
14926205 TACATATCTGTAATTTCAT
131 TACATATCTGTAATTTCAT
14926224 ATT
1 ATT
14926227 TTGAGAAGAA
Statistics
Matches: 149, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
149 149 1.00
ACGTcount: A:0.30, C:0.11, G:0.12, T:0.47
Consensus pattern (149 bp):
ATTATTATTGAAATTCCCTAAATTAATCCCTATTTTTGTCGAGATTTGAGTTGAATGGATTGCTT
AGCTATGTTTTGTTCTTAATAGTTAGTCTATATTATTTTAACTTGTTCTTAAAAAAAACTATGTA
TACATATCTGTAATTTCAT
Found at i:14927449 original size:14 final size:13
Alignment explanation
Indices: 14927429--14927460 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
14927419 TATACTTAAC
14927429 TTGTTCTTAATTA
1 TTGTTCTTAATTA
14927442 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
14927456 TTGTT
1 TTGTT
14927461 TTGATATCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:14953697 original size:19 final size:19
Alignment explanation
Indices: 14953673--14953710 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
14953663 AATTAATAGC
*
14953673 TAATTAACCTTAATTACTT
1 TAATTAAACTTAATTACTT
14953692 TAATTAAACTTAATTACTT
1 TAATTAAACTTAATTACTT
14953711 AACCTTAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.47
Consensus pattern (19 bp):
TAATTAAACTTAATTACTT
Found at i:14956095 original size:30 final size:29
Alignment explanation
Indices: 14956057--14956116 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 29
14956047 GATACACGGG
* *
14956057 AATAAGTTGTTTACACAAGCTGACATTAT
1 AATAAGTTGCTCACACAAGCTGACATTAT
*
14956086 AATATAGTTGCTCACACAAGTTGACATTAT
1 AATA-AGTTGCTCACACAAGCTGACATTAT
14956116 A
1 A
14956117 TCGAGGTTAC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 4 0.15
30 23 0.85
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.33
Consensus pattern (29 bp):
AATAAGTTGCTCACACAAGCTGACATTAT
Found at i:14981798 original size:28 final size:28
Alignment explanation
Indices: 14981758--14981828 Score: 110
Period size: 28 Copynumber: 2.6 Consensus size: 28
14981748 ATGCTATGAA
14981758 TGACATTTGAATTTGATCGTTTGATATT
1 TGACATTTGAATTTGATCGTTTGATATT
*
14981786 TGACATTTGAATTTGATTGTTTGATATT
1 TGACATTTGAATTTGATCGTTTGATATT
14981814 T-A-ATTTGATATTTGA
1 TGACATTTGA-ATTTGA
14981829 ATGGTTAAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
26 6 0.15
27 7 0.17
28 28 0.68
ACGTcount: A:0.27, C:0.04, G:0.17, T:0.52
Consensus pattern (28 bp):
TGACATTTGAATTTGATCGTTTGATATT
Found at i:14981802 original size:20 final size:19
Alignment explanation
Indices: 14981777--14981828 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 19
14981767 AATTTGATCG
14981777 TTTGATATTTGACATTTGAA
1 TTTGATATTTGACATTT-AA
* *
14981797 TTTGATTGTTTGATATTTAA
1 TTTGA-TATTTGACATTTAA
14981817 TTTGATATTTGA
1 TTTGATATTTGA
14981829 ATGGTTAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 6 0.21
20 12 0.43
21 10 0.36
ACGTcount: A:0.27, C:0.02, G:0.15, T:0.56
Consensus pattern (19 bp):
TTTGATATTTGACATTTAA
Found at i:14981828 original size:7 final size:7
Alignment explanation
Indices: 14981762--14981828 Score: 61
Period size: 7 Copynumber: 9.9 Consensus size: 7
14981752 TATGAATGAC
14981762 ATTTGA-
1 ATTTGAT
14981768 ATTTGAT
1 ATTTGAT
*
14981775 CGTTTGAT
1 -ATTTGAT
*
14981783 ATTTGAC
1 ATTTGAT
14981790 ATTTGA-
1 ATTTGAT
14981796 ATTTGATT
1 ATTTGA-T
*
14981804 GTTTGAT
1 ATTTGAT
14981811 ATTT-A-
1 ATTTGAT
14981816 ATTTGAT
1 ATTTGAT
14981823 ATTTGA
1 ATTTGA
14981829 ATGGTTAAAT
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
5 4 0.08
6 14 0.28
7 21 0.42
8 11 0.22
ACGTcount: A:0.27, C:0.03, G:0.16, T:0.54
Consensus pattern (7 bp):
ATTTGAT
Found at i:14984848 original size:32 final size:32
Alignment explanation
Indices: 14984812--14984874 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
14984802 TTTGGACTTA
14984812 CATGATGAAATTGGATCGATTCTATTGCCTTT
1 CATGATGAAATTGGATCGATTCTATTGCCTTT
14984844 CATGATGAAATTGGATCGATTCTATTGCCTT
1 CATGATGAAATTGGATCGATTCTATTGCCTT
14984875 GCAGGAACAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.40
Consensus pattern (32 bp):
CATGATGAAATTGGATCGATTCTATTGCCTTT
Found at i:14985866 original size:19 final size:21
Alignment explanation
Indices: 14985834--14985881 Score: 64
Period size: 19 Copynumber: 2.3 Consensus size: 21
14985824 TTGTGTTCAA
14985834 AAAAAATTGAAAAAAATAATG
1 AAAAAATTGAAAAAAATAATG
14985855 AAAAAA-TG-AAAAAATAATTG
1 AAAAAATTGAAAAAAATAA-TG
*
14985875 AAGAAAT
1 AAAAAAT
14985882 ACTCTGCTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 9 0.38
20 9 0.38
21 6 0.25
ACGTcount: A:0.71, C:0.00, G:0.10, T:0.19
Consensus pattern (21 bp):
AAAAAATTGAAAAAAATAATG
Found at i:14989318 original size:13 final size:15
Alignment explanation
Indices: 14989284--14989317 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 15
14989274 ATGTCGTGCA
14989284 AATAAACATAGAAAAT
1 AATAAACATA-AAAAT
14989300 AATAAACATAAAATAT
1 AATAAACATAAAA-AT
14989316 AA
1 AA
14989318 AATTACATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 3 0.18
16 14 0.82
ACGTcount: A:0.71, C:0.06, G:0.03, T:0.21
Consensus pattern (15 bp):
AATAAACATAAAAAT
Found at i:14989823 original size:7 final size:7
Alignment explanation
Indices: 14989811--14989983 Score: 88
Period size: 7 Copynumber: 23.1 Consensus size: 7
14989801 AATTATACAT
14989811 AATAATA
1 AATAATA
14989818 AATAATA
1 AATAATA
14989825 AATAAT-
1 AATAATA
14989831 -ATAATA
1 AATAATA
*
14989837 TATAATA
1 AATAATA
*
14989844 TATAATAA
1 AATAAT-A
14989852 AATAA-A
1 AATAATA
14989858 AATAATA
1 AATAATA
14989865 TAATGAATA
1 -AAT-AATA
14989874 ATATATATA
1 A-ATA-ATA
*
14989883 ATAAAATGA
1 A-ATAAT-A
*
14989892 TATAATA
1 AATAATA
*
14989899 TATAATAA
1 AATAAT-A
14989907 AATATATA
1 AATA-ATA
14989915 AATAAAATA
1 AAT--AATA
*
14989924 TATAATA
1 AATAATA
14989931 AA-ATATA
1 AATA-ATA
*
14989938 AACAATA
1 AATAATA
14989945 TAATAA-A
1 -AATAATA
14989952 TAATACATA
1 -AATA-ATA
14989961 AATAA-A
1 AATAATA
14989967 AATAATA
1 AATAATA
14989974 TATATAATA
1 -A-ATAATA
14989983 A
1 A
14989984 TTTTTTTACA
Statistics
Matches: 137, Mismatches: 8, Indels: 41
0.74 0.04 0.22
Matches are distributed among these distances:
5 5 0.04
6 13 0.09
7 54 0.39
8 36 0.26
9 28 0.20
10 1 0.01
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.32
Consensus pattern (7 bp):
AATAATA
Found at i:14989836 original size:12 final size:12
Alignment explanation
Indices: 14989809--14989983 Score: 121
Period size: 12 Copynumber: 15.6 Consensus size: 12
14989799 AAAATTATAC
14989809 ATAAT-AATAA-
1 ATAATAAATAAT
14989819 ATAATAAATAAT
1 ATAATAAATAAT
*
14989831 ATAATATATAAT
1 ATAATAAATAAT
*
14989843 AT-AT-AATAAA
1 ATAATAAATAAT
14989853 ATAA-AAATAAT
1 ATAATAAATAAT
*
14989864 ATAATGAATAAT
1 ATAATAAATAAT
*
14989876 AT-ATATAATAAA
1 ATAATA-AATAAT
*
14989888 ATGATATAAT-AT
1 ATAATA-AATAAT
14989900 ATAAT-AA-AAT
1 ATAATAAATAAT
*
14989910 AT-ATAAATAAA
1 ATAATAAATAAT
*
14989921 AT-ATATAATAAA
1 ATAATA-AATAAT
*
14989933 AT-ATAAACAAT
1 ATAATAAATAAT
14989944 ATAATAAATAAT
1 ATAATAAATAAT
*
14989956 A-CATAAATAA-
1 ATAATAAATAAT
14989966 A-AAT-AATATAT
1 ATAATAAATA-AT
14989977 ATAATAA
1 ATAATAA
14989984 TTTTTTTACA
Statistics
Matches: 134, Mismatches: 15, Indels: 29
0.75 0.08 0.16
Matches are distributed among these distances:
9 6 0.04
10 23 0.17
11 41 0.31
12 56 0.42
13 8 0.06
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.32
Consensus pattern (12 bp):
ATAATAAATAAT
Found at i:14989849 original size:33 final size:33
Alignment explanation
Indices: 14989804--14989984 Score: 143
Period size: 33 Copynumber: 5.6 Consensus size: 33
14989794 TTTTTAAAAT
14989804 TATACATA-ATAATAAATAATAAATAATATAATA
1 TATA-ATATATAATAAATAATAAATAATATAATA
14989837 TATAATATATAATAAAATAA-AAATAATATAATGA
1 TATAATATATAAT-AAATAATAAATAATATAAT-A
*
14989871 -ATAATATAT-AT-AAT-A-AAATGATATAATA
1 TATAATATATAATAAATAATAAATAATATAATA
* * *
14989899 TATAATAAAATATATAAATAAAATATATAATAAAATA
1 TATAAT-ATATA-ATAAAT--AATAAATAATATAATA
* *
14989936 TA-AACAATATAATAAATAATACATAA-ATAA-A
1 TATAA-TATATAATAAATAATAAATAATATAATA
*
14989967 AATAATATAT-AT-AATAAT
1 TATAATATATAATAAATAAT
14989985 TTTTTTACAT
Statistics
Matches: 123, Mismatches: 11, Indels: 32
0.74 0.07 0.19
Matches are distributed among these distances:
28 1 0.01
29 23 0.19
30 8 0.07
31 6 0.05
32 12 0.10
33 41 0.33
34 7 0.06
35 6 0.05
36 7 0.06
37 12 0.10
ACGTcount: A:0.65, C:0.02, G:0.01, T:0.33
Consensus pattern (33 bp):
TATAATATATAATAAATAATAAATAATATAATA
Found at i:14989984 original size:80 final size:81
Alignment explanation
Indices: 14989809--14989984 Score: 229
Period size: 80 Copynumber: 2.2 Consensus size: 81
14989799 AAAATTATAC
* * *
14989809 ATAATA-ATA-AATAATAAATAATATAATATATAATATATAATAAAATAAAAATAATATAATGAA
1 ATAATATATATAATAATAAATAATATAATATAAAATATATAATAAAATAAAAACAATATAATAAA
*
14989872 TAATATATATAATAAA
66 TAATACATATAATAAA
* *
14989888 ATGATATA-ATATATAATAAA-ATATATAA-ATAAAATATATAATAAAATATAAACAATATAATA
1 ATAATATATATA-ATAATAAATA-ATATAATATAAAATATATAATAAAATAAAAACAATATAATA
14989950 AATAATACATA-AATAAAA
64 AATAATACATATAAT-AAA
14989968 ATAATATATATAATAAT
1 ATAATATATATAATAAT
14989985 TTTTTTACAT
Statistics
Matches: 84, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
79 9 0.11
80 58 0.69
81 17 0.20
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.32
Consensus pattern (81 bp):
ATAATATATATAATAATAAATAATATAATATAAAATATATAATAAAATAAAAACAATATAATAAA
TAATACATATAATAAA
Found at i:14990086 original size:31 final size:29
Alignment explanation
Indices: 14990017--14990073 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
14990007 TTTATAGTAA
* *
14990017 AAATAAATAATATATAAAATATTTAAAAT
1 AAATAAATTATATATAAAAAATTTAAAAT
14990046 AAATAAATTATATATAAAAAATTTAAAA
1 AAATAAATTATATATAAAAAATTTAAAA
14990074 AGGATTAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (29 bp):
AAATAAATTATATATAAAAAATTTAAAAT
Found at i:14991716 original size:90 final size:90
Alignment explanation
Indices: 14991558--14992151 Score: 839
Period size: 90 Copynumber: 6.6 Consensus size: 90
14991548 ACCATGCTGA
*
14991558 TATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTACTTCGAT
1 TATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
* *
14991623 GTAAACACACGAATGTTAGATATGC
66 GTAAACACACGAATGTCAGATCTGC
* * * *
14991648 TATCATTGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCTGTCATCTTCGATCTGCTTCAAT
1 TATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
* *
14991713 GTAAACACACGAATGTTAGATATGC
66 GTAAACACACGAATGTCAGATCTGC
* ** * * *
14991738 TATCATTGATCTGCTCCTTGTCTATTACAGAGACGCCAAATCTGTCATCTTTGATCTGCTTTGAT
1 TATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
14991803 GTAAACACACGAATGTCAGATCTGC
66 GTAAACACACGAATGTCAGATCTGC
* * * * * * * *
14991828 TATCTTCGATCTACTCCCCGTCTAATAAAGAGATGCTAAATCTGTCATCTTCAATTTGCTTCAAT
1 TATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
* *
14991893 GTAAACATACGAATATCAGATCTGC
66 GTAAACACACGAATGTCAGATCTGC
* * * * *
14991918 TATCTTTGATCTACTCCCCGTCTAATACAGAAATGCCAAATCTATCATCTTCAATCTGCTTCGAT
1 TATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
14991983 GTAAACACACGAATGTCAGATCTGC
66 GTAAACACACGAATGTCAGATCTGC
*
14992008 TATCTTTGATCTGCTCCCCGTCTAATATAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
1 TATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
* *
14992073 GTAAACACACGAATGCCAGATCTGT
66 GTAAACACACGAATGTCAGATCTGC
** * * *
14992098 TATCTTCAATCTGCTCCCCGTCTAATACAGAAACACCAAATCTGT-TTCTTCGAT
1 TATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGAT
14992152 TTGTTCCCCG
Statistics
Matches: 450, Mismatches: 54, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
89 8 0.02
90 442 0.98
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.32
Consensus pattern (90 bp):
TATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGAT
GTAAACACACGAATGTCAGATCTGC
Found at i:14991749 original size:45 final size:45
Alignment explanation
Indices: 14991610--14991752 Score: 114
Period size: 45 Copynumber: 3.2 Consensus size: 45
14991600 TGTCATCTTC
* *
14991610 GATCTACTTCGATGTAAACACACGAATGTTAGATATGCTATCATT
1 GATCTGCTTCAATGTAAACACACGAATGTTAGATATGCTATCATT
*** * * * ** * *
14991655 GATCTGC-TCCCCGTCTAATATA-GAGATGCCAAATCTG-TCATC-TT
1 GATCTGCTTCAATGT-AAACACACGA-ATGTTAGATATGCT-ATCATT
14991699 CGATCTGCTTCAATGTAAACACACGAATGTTAGATATGCTATCATT
1 -GATCTGCTTCAATGTAAACACACGAATGTTAGATATGCTATCATT
14991745 GATCTGCT
1 GATCTGCT
14991753 CCTTGTCTAT
Statistics
Matches: 69, Mismatches: 21, Indels: 16
0.65 0.20 0.15
Matches are distributed among these distances:
44 9 0.13
45 51 0.74
46 9 0.13
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (45 bp):
GATCTGCTTCAATGTAAACACACGAATGTTAGATATGCTATCATT
Found at i:14992141 original size:45 final size:45
Alignment explanation
Indices: 14991912--14992189 Score: 176
Period size: 45 Copynumber: 6.2 Consensus size: 45
14991902 CGAATATCAG
* * * *
14991912 ATCTGCTATCTTTGATCTACTCCCCGTCTAATACAGAAATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAAACGCCAA
* * * * * * * * *
14991957 ATCTATCATCTTCAATCTGCT--TCGATGTAA-ACACACGAATGTCAG
1 ATCTGTTATCTTCGATCTGCTCCCCG-TCTAATACAGA--AACGCCAA
* * * *
14992002 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATATAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAAACGCCAA
* * * * * *
14992047 ATCTGTCATCTTCGATCTGCT--TCGATGTAA-ACACACGAATGCCAG
1 ATCTGTTATCTTCGATCTGCTCCCCG-TCTAATACAGA--AACGCCAA
* *
14992092 ATCTGTTATCTTCAATCTGCTCCCCGTCTAATACAGAAACACCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAAACGCCAA
* * * *
14992137 ATCTGTT-TCTTCGATTTGTTCCCCGTC-AATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAAACGCCAA
*
14992180 ATCTGCTATC
1 ATCTGTTATC
14992190 GGTGATCTAC
Statistics
Matches: 171, Mismatches: 49, Indels: 27
0.69 0.20 0.11
Matches are distributed among these distances:
43 30 0.18
44 27 0.16
45 95 0.56
46 8 0.05
47 11 0.06
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAAACGCCAA
Found at i:15004191 original size:3 final size:3
Alignment explanation
Indices: 15004183--15004334 Score: 99
Period size: 3 Copynumber: 49.7 Consensus size: 3
15004173 AAAATTATAC
15004183 ATA ATA ATAA ATA ATAA ATA ATA A-A ATA ATA ATA ATA TATA ATA A-A
1 ATA ATA AT-A ATA AT-A ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA
* *
15004229 ATA AAA ATA AT- ATA ATGA ATA ATA TATA AT- ATGT ATA ATA TATA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA -ATA ATA AT-A ATA ATA -ATA ATA
15004276 A-A ATA TATA ATA A-A TATAA ATA ATA TATA A-A TATA ATAA ATA AT-
1 ATA ATA -ATA ATA ATA -AT-A ATA ATA -ATA ATA -ATA AT-A ATA ATA
15004320 ATA AT- ATA AT- ATA AT
1 ATA ATA ATA ATA ATA AT
15004335 TTTTTACATA
Statistics
Matches: 123, Mismatches: 3, Indels: 46
0.72 0.02 0.27
Matches are distributed among these distances:
2 18 0.15
3 72 0.59
4 32 0.26
5 1 0.01
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:15004197 original size:7 final size:7
Alignment explanation
Indices: 15004185--15004334 Score: 111
Period size: 7 Copynumber: 21.9 Consensus size: 7
15004175 AATTATACAT
15004185 AATAATA
1 AATAATA
15004192 AATAATA
1 AATAATA
15004199 AATAATAA
1 AATAAT-A
15004207 AATAAT-
1 AATAATA
15004213 AATAATA
1 AATAATA
*
15004220 TATAAT-
1 AATAATA
15004226 AA-AATA
1 AATAATA
15004232 AA-AATA
1 AATAATA
*
15004238 ATATAATG
1 A-ATAATA
15004246 AATAATA
1 AATAATA
*
15004253 TATAATA
1 AATAATA
*
15004260 TGTATAATA
1 --AATAATA
*
15004269 TATAAT-
1 AATAATA
15004275 AA-AATA
1 AATAATA
*
15004281 TATAATA
1 AATAATA
15004288 AAT-ATA
1 AATAATA
15004294 AATAATA
1 AATAATA
*
15004301 TATAA-A
1 AATAATA
*
15004307 TATAATA
1 AATAATA
15004314 AATAATA
1 AATAATA
15004321 TAAT-ATA
1 -AATAATA
15004328 ATATAAT
1 A-ATAAT
15004335 TTTTTACATA
Statistics
Matches: 119, Mismatches: 10, Indels: 27
0.76 0.06 0.17
Matches are distributed among these distances:
5 6 0.05
6 29 0.24
7 61 0.51
8 16 0.13
9 7 0.06
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (7 bp):
AATAATA
Found at i:15004224 original size:28 final size:28
Alignment explanation
Indices: 15004183--15004330 Score: 137
Period size: 28 Copynumber: 5.2 Consensus size: 28
15004173 AAAATTATAC
*
15004183 ATAATAATAAATAATAAATAATAAAATA
1 ATAATAATATATAATAAATAATAAAATA
*
15004211 ATAATAATATATAATAAAATAAAAATAATATA
1 ATAATAATATATAAT-AAAT---AATAAAATA
* *
15004243 ATGAATAATATATAATATGTATAAT-ATATA
1 AT-AATAATATATAATA--AATAATAAAATA
15004273 ATAA-AATATATAATAAAT-AT-AAATA
1 ATAATAATATATAATAAATAATAAAATA
*
15004298 ATATATAA-ATATAATAAATAATATAAT-
1 ATA-ATAATATATAATAAATAATAAAATA
15004325 ATAATA
1 ATAATA
15004331 TAATTTTTTA
Statistics
Matches: 103, Mismatches: 6, Indels: 24
0.77 0.05 0.18
Matches are distributed among these distances:
25 9 0.09
26 17 0.17
27 7 0.07
28 28 0.27
29 6 0.06
30 7 0.07
31 3 0.03
32 11 0.11
33 13 0.13
34 2 0.02
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (28 bp):
ATAATAATATATAATAAATAATAAAATA
Found at i:15004388 original size:29 final size:29
Alignment explanation
Indices: 15004365--15004419 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
15004355 GTTTATAGTA
15004365 AAATAAATAATA-ATAAAATATTTAAAAT
1 AAATAAATAATATATAAAATATTTAAAAT
* *
15004393 AAATAAATTATATATAAAA-ATTAAAAA
1 AAATAAATAATATATAAAATATTTAAAA
15004420 AGGATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 18 0.75
29 6 0.25
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (29 bp):
AAATAAATAATATATAAAATATTTAAAAT
Found at i:15004843 original size:108 final size:108
Alignment explanation
Indices: 15004654--15004868 Score: 367
Period size: 108 Copynumber: 2.0 Consensus size: 108
15004644 ACGAAATTAA
* * * *
15004654 AAAAGGGAAAAATGCAGAAGGGCTCAAATGGTAATTTTCCCATTTACTAAAAACACGCAGATCCT
1 AAAAGGGAAAAATGCAGAAGGGCTCAAATGGCAATTTGCCCATCTACCAAAAACACGCAGATCCT
*
15004719 CCCCGGGTCACGGTTCAACGCGTGGATCCTTCACTTAAACGGC
66 CCCCGGGTCACGGTTCAACGCGCGGATCCTTCACTTAAACGGC
*
15004762 AAAAGGGAAAAATGCGGAAGGGCTCAAATGGCAATTTGCCCATCTACCAAAAACACGCAGATCCT
1 AAAAGGGAAAAATGCAGAAGGGCTCAAATGGCAATTTGCCCATCTACCAAAAACACGCAGATCCT
*
15004827 CCCCGGGTCACGGTTCAACTCGCGGATCCTTCACTTAAACGG
66 CCCCGGGTCACGGTTCAACGCGCGGATCCTTCACTTAAACGG
15004869 TGTCGTTTTG
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
108 100 1.00
ACGTcount: A:0.32, C:0.27, G:0.22, T:0.20
Consensus pattern (108 bp):
AAAAGGGAAAAATGCAGAAGGGCTCAAATGGCAATTTGCCCATCTACCAAAAACACGCAGATCCT
CCCCGGGTCACGGTTCAACGCGCGGATCCTTCACTTAAACGGC
Found at i:15005816 original size:12 final size:12
Alignment explanation
Indices: 15005793--15005831 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
15005783 TTTTATTATT
15005793 TTTTGATTTTTTG
1 TTTTG-TTTTTTG
15005806 TTTTGTTTTTTG
1 TTTTGTTTTTTG
*
15005818 TTTT-TTTTTCG
1 TTTTGTTTTTTG
15005829 TTT
1 TTT
15005832 ATTTTTCGGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 9 0.36
12 11 0.44
13 5 0.20
ACGTcount: A:0.03, C:0.03, G:0.13, T:0.82
Consensus pattern (12 bp):
TTTTGTTTTTTG
Found at i:15005825 original size:11 final size:11
Alignment explanation
Indices: 15005799--15005837 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
15005789 TATTTTTTGA
15005799 TTTTTTGTTTT
1 TTTTTTGTTTT
15005810 GTTTTTTGTTTT
1 -TTTTTTGTTTT
* *
15005822 TTTTTCGTTTA
1 TTTTTTGTTTT
15005833 TTTTT
1 TTTTT
15005838 CGGGCCGGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
11 14 0.56
12 11 0.44
ACGTcount: A:0.03, C:0.03, G:0.10, T:0.85
Consensus pattern (11 bp):
TTTTTTGTTTT
Found at i:15007304 original size:44 final size:44
Alignment explanation
Indices: 15007241--15007415 Score: 217
Period size: 44 Copynumber: 3.9 Consensus size: 44
15007231 TGTAACCCGC
*
15007241 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATTCGCAT
*
15007285 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATTCGC-A--T
* *** *
15007331 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG--ATTCGCAT
*
15007378 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAT
15007416 GCCCAAATGT
Statistics
Matches: 112, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 41 0.37
46 33 0.29
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATTCGCAT
Found at i:15007406 original size:93 final size:91
Alignment explanation
Indices: 15007249--15007418 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 91
15007239 GCCCATAAGT
*
15007249 GAACTCGGACTCAACTCAACGAGCTCGGGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
1 GAACTCGGACTCAACTCAACGAGCTCGGATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
15007314 AGCTCGGATGCCTAGTTACATCTCTC
66 AGCTCGGATGCCTAGTTACATCTCTC
*
15007340 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG--ATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
15007405 CGAGTTCGGATGCC
64 CGAGCTCGGATGCC
15007419 CAAATGTCCT
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 27 0.36
93 47 0.64
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
AGCTCGGATGCCTAGTTACATCTCTC
Found at i:15009278 original size:27 final size:26
Alignment explanation
Indices: 15009178--15009284 Score: 124
Period size: 27 Copynumber: 4.0 Consensus size: 26
15009168 GGAAGCGTTT
* * *
15009178 TGGTGGCTATGCCACAAATATCTGGTC
1 TGGTGGCTCTGCCAC-ATTATCTGTTC
*
15009205 TGGTGGCTATGCCACATATATCTGTTC
1 TGGTGGCTCTGCCACAT-TATCTGTTC
15009232 TGGTGGCTCTGCCACGATTATCTGTATC
1 TGGTGGCTCTGCCAC-ATTATCTGT-TC
* *
15009260 TGGTGACTCTGTCACATTATCTGTT
1 TGGTGGCTCTGCCACATTATCTGTT
15009285 ATGGCAGCCA
Statistics
Matches: 72, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
26 2 0.03
27 53 0.74
28 17 0.24
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.36
Consensus pattern (26 bp):
TGGTGGCTCTGCCACATTATCTGTTC
Found at i:15009374 original size:19 final size:22
Alignment explanation
Indices: 15009350--15009389 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
15009340 CTCCCCACAC
15009350 GGTGTA-A-GGTTGG-TATGGG
1 GGTGTATACGGTTGGATATGGG
15009369 GGTGTATACGGTTGGATATGG
1 GGTGTATACGGTTGGATATGG
15009390 TTGGGTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.17, C:0.03, G:0.47, T:0.33
Consensus pattern (22 bp):
GGTGTATACGGTTGGATATGGG
Found at i:15170116 original size:27 final size:27
Alignment explanation
Indices: 15170085--15170261 Score: 203
Period size: 27 Copynumber: 6.6 Consensus size: 27
15170075 TATATGAGTC
* * * *
15170085 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
15170112 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
15170139 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
** * *
15170166 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
15170193 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
15170220 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
15170247 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
15170262 GTACAATTTA
Statistics
Matches: 129, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
27 128 0.99
28 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:15170223 original size:81 final size:81
Alignment explanation
Indices: 15170106--15170260 Score: 231
Period size: 81 Copynumber: 1.9 Consensus size: 81
15170096 TGCTATATAA
* * *
15170106 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAACTCGCAC
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
15170171 ACTTAGTGCCGCATGG
66 ACTTAGTGCCGCATGG
* * **
15170187 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
15170251 CACTTAGTGC
65 CACTTAGTGC
15170261 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
80 1 0.02
81 65 0.98
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:15174637 original size:90 final size:90
Alignment explanation
Indices: 15174543--15174741 Score: 231
Period size: 90 Copynumber: 2.2 Consensus size: 90
15174533 TGCCATAGTG
* * * * *
15174543 TCTTTCAACTATGGTCTTTCTCAATAGAATTGTGATGCCATAATGTCTTTTATTCATGGTCTTA-
1 TCTTTCAACTATGGTCTTACTCAATAGAATCGTGATGCCATAACGTCTTTCAGTCATGGTCTTAC
15174607 TTGGTTAGAATCATGATGCCATAACA
66 TTGGTTAGAAT-ATGATGCCATAACA
* **
15174633 TCTTTC-AGTCATGGTCTTACTCGTTAGAATCGTGATGCCATAACGTCTTTCAGTCATGGTCTTA
1 TCTTTCAACT-ATGGTCTTACTCAATAGAATCGTGATGCCATAACGTCTTTCAGTCATGGTCTTA
* ** * * **
15174697 CTTGTTTCTAGTATGGTGCCATAATG
65 CTTGGTTAGAATATGATGCCATAACA
15174723 TCTTTCAACTATGGTCTTA
1 TCTTTCAACTATGGTCTTA
15174742 ATCATTTCCT
Statistics
Matches: 90, Mismatches: 16, Indels: 6
0.80 0.14 0.05
Matches are distributed among these distances:
89 2 0.02
90 79 0.88
91 9 0.10
ACGTcount: A:0.23, C:0.19, G:0.17, T:0.41
Consensus pattern (90 bp):
TCTTTCAACTATGGTCTTACTCAATAGAATCGTGATGCCATAACGTCTTTCAGTCATGGTCTTAC
TTGGTTAGAATATGATGCCATAACA
Found at i:15174696 original size:45 final size:45
Alignment explanation
Indices: 15174529--15174698 Score: 198
Period size: 45 Copynumber: 3.8 Consensus size: 45
15174519 TGTTTGATTT
** * * ** *
15174529 GTGATGCCATAGTGTCTTTCA-ACTATGGTCTTTCTCAATAGAATT
1 GTGATGCCATAACGTCTTTCAGTC-ATGGTCTTACTCGTTAGAATC
* * * * *
15174574 GTGATGCCATAATGTCTTTTATTCATGGTCTTATTGGTTAGAATC
1 GTGATGCCATAACGTCTTTCAGTCATGGTCTTACTCGTTAGAATC
* *
15174619 ATGATGCCATAACATCTTTCAGTCATGGTCTTACTCGTTAGAATC
1 GTGATGCCATAACGTCTTTCAGTCATGGTCTTACTCGTTAGAATC
15174664 GTGATGCCATAACGTCTTTCAGTCATGGTCTTACT
1 GTGATGCCATAACGTCTTTCAGTCATGGTCTTACT
15174699 TGTTTCTAGT
Statistics
Matches: 106, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
45 105 0.99
46 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.39
Consensus pattern (45 bp):
GTGATGCCATAACGTCTTTCAGTCATGGTCTTACTCGTTAGAATC
Found at i:15174717 original size:45 final size:43
Alignment explanation
Indices: 15174578--15174729 Score: 137
Period size: 45 Copynumber: 3.4 Consensus size: 43
15174568 AGAATTGTGA
* * * * *
15174578 TGCCATAATGTCTTTTATTCATGGTCTTA-TTGGTTAGAATCATGA
1 TGCCATAACGTCTTTCAGTCATGGTCTTACTTGTTTAG--T-ATGG
* * *
15174623 TGCCATAACATCTTTCAGTCATGGTCTTACTCG-TTAGAATCGTG
1 TGCCATAACGTCTTTCAGTCATGGTCTTACTTGTTTAGTAT-G-G
15174667 ATGCCATAACGTCTTTCAGTCATGGTCTTACTTGTTTCTAGTATGG
1 -TGCCATAACGTCTTTCAGTCATGGTCTTACTTG-TT-TAGTATGG
*
15174713 TGCCATAATGTCTTTCA
1 TGCCATAACGTCTTTCA
15174730 ACTATGGTCT
Statistics
Matches: 89, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
45 76 0.85
46 3 0.03
47 2 0.02
48 5 0.06
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.41
Consensus pattern (43 bp):
TGCCATAACGTCTTTCAGTCATGGTCTTACTTGTTTAGTATGG
Found at i:15177062 original size:12 final size:12
Alignment explanation
Indices: 15177045--15177069 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15177035 GATGAGCAAG
15177045 TTATTATTTTAA
1 TTATTATTTTAA
15177057 TTATTATTTTAA
1 TTATTATTTTAA
15177069 T
1 T
15177070 GTCTTCAGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TTATTATTTTAA
Found at i:15179524 original size:42 final size:45
Alignment explanation
Indices: 15179461--15179671 Score: 247
Period size: 42 Copynumber: 4.7 Consensus size: 45
15179451 CTTCCTTTTC
** *
15179461 TCGATGCCATAGTTCAACTATGGTCTTACACAT-C-T-TCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATACATATCACAT-A
*
15179504 T-GATGCCATAGCCCAGCTATGGTCTTACACAT--AT-TCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATACATATCACATA
*
15179545 TCGATGCCGTAGCCCAGCTATGGTCTTACACGTAATCACATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC---AT-ACATATCACATA
*
15179594 TCGATGCCATAGCCCAGCTATGGTCTTACATAGATCACATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTAC--ACAT-ACATATCACATA
15179642 TCGATGCCATAGCCCAGCTATGGTCTTACA
1 TCGATGCCATAGCCCAGCTATGGTCTTACA
15179672 TGAATCACAT
Statistics
Matches: 149, Mismatches: 8, Indels: 19
0.85 0.05 0.11
Matches are distributed among these distances:
41 2 0.01
42 62 0.42
43 1 0.01
45 2 0.01
46 1 0.01
48 46 0.31
49 34 0.23
51 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (45 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATACATATCACATA
Found at i:15179610 original size:91 final size:93
Alignment explanation
Indices: 15179461--15179715 Score: 275
Period size: 97 Copynumber: 2.8 Consensus size: 93
15179451 CTTCCTTTTC
** *
15179461 TCGATGCCATAGTTCAACTATGGTCTTACAC--AT--C-T-TCACATAATGATGCCATAGCCCAG
1 TCGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCACATAATGATGCCATAGCCCAG
* *
15179520 CTATGGTCTTAC-A-CATAT-TCATATA
66 CTATGGTCTTACAATCACATATCACATA
*
15179545 TCGATGCCGTAGCCCAGCTATGGTCTTACACGTAATCACATATCACAT-ATCGATGCCATAGCCC
1 TCGATGCCATAGCCCAGCTATGGTCTTACACG-AATCACATATCACATAAT-GATGCCATAGCCC
15179609 AGCTATGGTCTTACATAGATCACATATCACATA
64 AGCTATGGTCTTAC--A-ATCACATATCACATA
* * *
15179642 TCGATGCCATAGCCCAGCTATGGTCTTACATGAATCACATATCTCACTAAT-A--CCATATCCCA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCACA-TAATGATGCCATAGCCCA
*
15179704 GATATGGTCTTA
65 GCTATGGTCTTA
15179716 TACAGTAGCA
Statistics
Matches: 144, Mismatches: 11, Indels: 22
0.81 0.06 0.12
Matches are distributed among these distances:
84 27 0.19
87 2 0.01
89 1 0.01
90 3 0.02
91 33 0.23
94 20 0.14
95 1 0.01
96 18 0.12
97 37 0.26
98 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (93 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCACATAATGATGCCATAGCCCAG
CTATGGTCTTACAATCACATATCACATA
Found at i:15179650 original size:48 final size:48
Alignment explanation
Indices: 15179531--15179684 Score: 240
Period size: 48 Copynumber: 3.2 Consensus size: 48
15179521 TATGGTCTTA
* *
15179531 CACATATTCATATATCGATGCCGTAGCCCAGCTATGGTCTTACACGTA-AT
1 CACATA-TCACATATCGATGCCATAGCCCAGCTATGGTCTTACA--TAGAT
15179581 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACATAGAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACATAGAT
15179629 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACAT-GAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACATAG-AT
15179677 CACATATC
1 CACATATC
15179685 TCACTAATAC
Statistics
Matches: 100, Mismatches: 2, Indels: 6
0.93 0.02 0.06
Matches are distributed among these distances:
47 3 0.03
48 56 0.56
49 35 0.35
50 6 0.06
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (48 bp):
CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACATAGAT
Found at i:15179749 original size:47 final size:48
Alignment explanation
Indices: 15179548--15179776 Score: 159
Period size: 48 Copynumber: 4.8 Consensus size: 48
15179538 TCATATATCG
* * * * * * * *
15179548 ATGCCGTAGCCCAGCTATGGTCTTACACGT-AATCACATATCACATATCG
1 ATGCCATATCCCAGATATGGTCTTATACATGAAGCACATATCAC--ACCA
* * * * *
15179597 ATGCCATAGCCCAGCTATGGTC-T-TACAT-AGATCACATATCACATATCG
1 ATGCCATATCCCAGATATGGTCTTATACATGA-AGCACATATCAC--ACCA
* * * * *
15179645 ATGCCATAGCCCAGCTATGGTC-T-TACATGAATCACATATCTCACTA
1 ATGCCATATCCCAGATATGGTCTTATACATGAAGCACATATCACACCA
* * *
15179691 ATACCATATCCCAGATATGGTCTTATACA-GTAGCATATATCACACCA
1 ATGCCATATCCCAGATATGGTCTTATACATGAAGCACATATCACACCA
*
15179738 ATGCCATATCCCAGATATGGTCTTATAC-GGAAGCACATA
1 ATGCCATATCCCAGATATGGTCTTATACATGAAGCACATA
15179777 ATTACATCTC
Statistics
Matches: 157, Mismatches: 18, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
46 20 0.13
47 53 0.34
48 62 0.39
49 22 0.14
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (48 bp):
ATGCCATATCCCAGATATGGTCTTATACATGAAGCACATATCACACCA
Found at i:15187195 original size:64 final size:64
Alignment explanation
Indices: 15187114--15187297 Score: 167
Period size: 67 Copynumber: 2.8 Consensus size: 64
15187104 AGACATTATG
* *
15187114 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * * *
15187178 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGATAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
15187243 AA
63 AA
* * * * * *
15187245 ACTG--GCAAGATCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
15187298 CAAACTATAT
Statistics
Matches: 94, Mismatches: 21, Indels: 11
0.75 0.17 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 21 0.22
65 8 0.09
66 14 0.15
67 30 0.32
68 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Done.