Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 53 of 362
Found at i:15867487 original size:28 final size:28
Alignment explanation
Indices: 15867455--15867519 Score: 130
Period size: 28 Copynumber: 2.3 Consensus size: 28
15867445 GTACTAGGCC
15867455 ATGCCAAACCTTTAGGGTTTACTGACTT
1 ATGCCAAACCTTTAGGGTTTACTGACTT
15867483 ATGCCAAACCTTTAGGGTTTACTGACTT
1 ATGCCAAACCTTTAGGGTTTACTGACTT
15867511 ATGCCAAAC
1 ATGCCAAAC
15867520 AGCCAAGTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (28 bp):
ATGCCAAACCTTTAGGGTTTACTGACTT
Found at i:15877134 original size:29 final size:29
Alignment explanation
Indices: 15877095--15877173 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
15877085 CTTAATAATC
*
15877095 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
15877125 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
15877154 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
15877174 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:15885246 original size:29 final size:29
Alignment explanation
Indices: 15885207--15885285 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
15885197 CTTAATAATC
*
15885207 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
15885237 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
15885266 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
15885286 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:15894697 original size:19 final size:19
Alignment explanation
Indices: 15894675--15894737 Score: 76
Period size: 19 Copynumber: 3.3 Consensus size: 19
15894665 AATAAAAATA
15894675 AAAATAATTTTAAAAATTT
1 AAAATAATTTTAAAAATTT
*
15894694 AAAATAAATTTT-TAAATTT
1 AAAAT-AATTTTAAAAATTT
15894713 AAAAT-ATTTATAAAAATTCT
1 AAAATAATTT-TAAAAATT-T
15894733 AAAAT
1 AAAAT
15894738 TTATCTTTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
17 4 0.11
18 1 0.03
19 21 0.55
20 12 0.32
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (19 bp):
AAAATAATTTTAAAAATTT
Found at i:15894729 original size:27 final size:27
Alignment explanation
Indices: 15894683--15894740 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
15894673 TAAAAATAAT
* *
15894683 TTTAAAAATTTAAAATAAATTTTTAAA
1 TTTAAAAATTTAAAATAAATTCTAAAA
*
15894710 TTTAAAATATTTATAA-AAATTCTAAAA
1 TTTAAAA-ATTTAAAATAAATTCTAAAA
15894737 TTTA
1 TTTA
15894741 TCTTTTAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 20 0.74
28 7 0.26
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (27 bp):
TTTAAAAATTTAAAATAAATTCTAAAA
Found at i:15895300 original size:13 final size:13
Alignment explanation
Indices: 15895282--15895307 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15895272 CCATCGTCAG
15895282 TTTTTTTTTGTTT
1 TTTTTTTTTGTTT
15895295 TTTTTTTTTGTTT
1 TTTTTTTTTGTTT
15895308 CCCTCCAAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (13 bp):
TTTTTTTTTGTTT
Found at i:15896577 original size:24 final size:24
Alignment explanation
Indices: 15896540--15896596 Score: 82
Period size: 24 Copynumber: 2.4 Consensus size: 24
15896530 TTATTCATAC
15896540 ATTATAT-TATATGCATGAA-TCTT
1 ATTATATATATATGCAT-AAGTCTT
*
15896563 ATTATATATATATGCATAAGTTTT
1 ATTATATATATATGCATAAGTCTT
15896587 ATTATATATA
1 ATTATATATA
15896597 ATATATATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
23 9 0.29
24 22 0.71
ACGTcount: A:0.39, C:0.05, G:0.07, T:0.49
Consensus pattern (24 bp):
ATTATATATATATGCATAAGTCTT
Found at i:15897343 original size:18 final size:18
Alignment explanation
Indices: 15897314--15897357 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
15897304 AACAACGCCA
15897314 TGTTAT-TTTGTGTACTG
1 TGTTATATTTGTGTACTG
*
15897331 TGTTATATTTGTGTATTG
1 TGTTATATTTGTGTACTG
15897349 TGTTATATT
1 TGTTATATT
15897358 GTGAACCGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 6 0.24
18 19 0.76
ACGTcount: A:0.16, C:0.02, G:0.20, T:0.61
Consensus pattern (18 bp):
TGTTATATTTGTGTACTG
Found at i:15898194 original size:17 final size:17
Alignment explanation
Indices: 15898172--15898225 Score: 65
Period size: 17 Copynumber: 3.2 Consensus size: 17
15898162 TGAACGAATT
15898172 TTATATTGAATGAACTG
1 TTATATTGAATGAACTG
* * *
15898189 TTATATTGTACGAACTA
1 TTATATTGAATGAACTG
*
15898206 TTATATTAAATGAA-TG
1 TTATATTGAATGAACTG
15898222 TTAT
1 TTAT
15898226 TATGCATGAA
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
16 5 0.17
17 25 0.83
ACGTcount: A:0.37, C:0.06, G:0.13, T:0.44
Consensus pattern (17 bp):
TTATATTGAATGAACTG
Found at i:15898237 original size:33 final size:34
Alignment explanation
Indices: 15898172--15898259 Score: 92
Period size: 33 Copynumber: 2.6 Consensus size: 34
15898162 TGAACGAATT
* *
15898172 TTATATTGAATGAACTGTTATATTGTACGAACTA
1 TTATATTAAATGAACTGTTATATTGCACGAACTA
*
15898206 TTATATTAAATGAA-TGTTAT-TATGCATGAACTA
1 TTATATTAAATGAACTGTTATAT-TGCACGAACTA
* *
15898239 TTAT-TTCATATGAACTATTAT
1 TTATATT-AAATGAACTGTTAT
15898260 TTTATGTGAA
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
32 3 0.07
33 25 0.54
34 18 0.39
ACGTcount: A:0.36, C:0.08, G:0.11, T:0.44
Consensus pattern (34 bp):
TTATATTAAATGAACTGTTATATTGCACGAACTA
Found at i:15913732 original size:39 final size:39
Alignment explanation
Indices: 15913678--15913891 Score: 295
Period size: 39 Copynumber: 5.5 Consensus size: 39
15913668 ATTTGAAAAT
15913678 TATATCCGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
1 TATATCCGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
*
15913717 TATATCCGGACTTAAAGTCCGCAGGCAATATGC-GGAAA
1 TATATCCGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
* * * *
15913755 TATATCTGGACTTCAGGTTCGCAGGCTATATGCGGGAAA
1 TATATCCGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
*
15913794 TATATCCAGACTTAAAGTCCGCAGGCTATATGCGGGAAA
1 TATATCCGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
* * * ** *
15913833 TATATCCGAACTTCAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
* *
15913872 TATATCTGGGCTTAAAGTCC
1 TATATCCGGACTTAAAGTCC
15913892 CGAAGGCTTA
Statistics
Matches: 151, Mismatches: 23, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
38 33 0.22
39 118 0.78
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (39 bp):
TATATCCGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
Found at i:15913806 original size:77 final size:78
Alignment explanation
Indices: 15913678--15913891 Score: 313
Period size: 77 Copynumber: 2.8 Consensus size: 78
15913668 ATTTGAAAAT
* *
15913678 TATATCCGGACTTAAAGTCCGCAGGCTATATGCGGGAAATATATCCGGACTTAAAGTCCGCAGGC
1 TATATCCGGACTTCAGGTCCGCAGGCTATATGCGGGAAATATATCCGGACTTAAAGTCCGCAGGC
15913743 AATATGC-GGAAA
66 AATATGCGGGAAA
* * *
15913755 TATATCTGGACTTCAGGTTCGCAGGCTATATGCGGGAAATATATCCAGACTTAAAGTCCGCAGGC
1 TATATCCGGACTTCAGGTCCGCAGGCTATATGCGGGAAATATATCCGGACTTAAAGTCCGCAGGC
*
15913820 TATATGCGGGAAA
66 AATATGCGGGAAA
* ** * * *
15913833 TATATCCGAACTTCAGGTCCGCAGGCTACGTGCTGGAAATATATCTGGGCTTAAAGTCC
1 TATATCCGGACTTCAGGTCCGCAGGCTATATGCGGGAAATATATCCGGACTTAAAGTCC
15913892 CGAAGGCTTA
Statistics
Matches: 121, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
77 66 0.55
78 55 0.45
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (78 bp):
TATATCCGGACTTCAGGTCCGCAGGCTATATGCGGGAAATATATCCGGACTTAAAGTCCGCAGGC
AATATGCGGGAAA
Found at i:15919284 original size:60 final size:59
Alignment explanation
Indices: 15919172--15919284 Score: 145
Period size: 60 Copynumber: 1.9 Consensus size: 59
15919162 TAGACATTCG
* * *
15919172 CAAACTATAATCCTCATTTTAAATTTATCCCTAAACTTCAAAACGTTTTAATTACATCC
1 CAAACTATAATCCTCATTTTAAATTTATCCCTAAACTTAAAAACATTCTAATTACATCC
** * * *
15919231 CAAACTATGGTCCTCATTTTTAGATTTATCCTTAAACTTAAAAATATTCTAATT
1 CAAACTATAATCCTCA-TTTTAAATTTATCCCTAAACTTAAAAACATTCTAATT
15919285 GCATTCCTAA
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
59 14 0.31
60 31 0.69
ACGTcount: A:0.36, C:0.20, G:0.04, T:0.40
Consensus pattern (59 bp):
CAAACTATAATCCTCATTTTAAATTTATCCCTAAACTTAAAAACATTCTAATTACATCC
Found at i:15919775 original size:7 final size:7
Alignment explanation
Indices: 15919759--15919800 Score: 75
Period size: 7 Copynumber: 6.0 Consensus size: 7
15919749 TTTTAACACG
*
15919759 CTTACAC
1 CTTACGC
15919766 CTTACGC
1 CTTACGC
15919773 CTTACGC
1 CTTACGC
15919780 CTTACGC
1 CTTACGC
15919787 CTTACGC
1 CTTACGC
15919794 CTTACGC
1 CTTACGC
15919801 ATTTGCCCGC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.17, C:0.43, G:0.12, T:0.29
Consensus pattern (7 bp):
CTTACGC
Found at i:15924176 original size:43 final size:43
Alignment explanation
Indices: 15924117--15924259 Score: 214
Period size: 43 Copynumber: 3.3 Consensus size: 43
15924107 AAAAAACGAT
15924117 GCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCCACAAACGCC
1 GCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCCACAAACGCC
* * * *
15924160 GCTAGAGGTCAAGACCTTTAGCGGCGCTTTCCCCACAAACGCA
1 GCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCCACAAACGCC
* * *
15924203 GCTAGAGGTCTTGACCTTTAGCGGCGCTTTTCCCACAAACGTC
1 GCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCCACAAACGCC
*
15924246 GCTAAAGGTAATGA
1 GCTAAAGGTCATGA
15924260 AATTTTAAAA
Statistics
Matches: 88, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 88 1.00
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.23
Consensus pattern (43 bp):
GCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCCACAAACGCC
Found at i:15925541 original size:138 final size:138
Alignment explanation
Indices: 15925293--15925544 Score: 459
Period size: 138 Copynumber: 1.8 Consensus size: 138
15925283 TTTTAAAATT
*
15925293 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACCTAAAAATAAT
1 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACCTAAAAACAAT
* *
15925358 TTAATGCCAATTTTTAAGGAAATTACATATGGTTCTAAAATTCAAAACAAGTACTCCTAAAAGCA
66 TTAATGCCAATTTTTAAAGAAATTACATATGATTCTAAAATTCAAAACAAGTACTCCTAAAAGCA
15925423 TCCAGACG
131 TCCAGACG
*
15925431 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTATTATAAAACCTAAAAACAAT
1 TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACCTAAAAACAAT
*
15925496 TTAATGCCAATTTTTAAAGAGATTACATATGATTCTAAAATTCAAAACA
66 TTAATGCCAATTTTTAAAGAAATTACATATGATTCTAAAATTCAAAACA
15925545 GGGACTCCAC
Statistics
Matches: 109, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
138 109 1.00
ACGTcount: A:0.50, C:0.13, G:0.09, T:0.29
Consensus pattern (138 bp):
TTAAATCAAATAAGTTGCATAATAACATAACAAAGAGAAATGTTAATATAAAACCTAAAAACAAT
TTAATGCCAATTTTTAAAGAAATTACATATGATTCTAAAATTCAAAACAAGTACTCCTAAAAGCA
TCCAGACG
Found at i:15927183 original size:7 final size:7
Alignment explanation
Indices: 15927173--15927213 Score: 82
Period size: 7 Copynumber: 5.9 Consensus size: 7
15927163 TAAATATTAA
15927173 ATTTTTT
1 ATTTTTT
15927180 ATTTTTT
1 ATTTTTT
15927187 ATTTTTT
1 ATTTTTT
15927194 ATTTTTT
1 ATTTTTT
15927201 ATTTTTT
1 ATTTTTT
15927208 ATTTTT
1 ATTTTT
15927214 AAAATTTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
ATTTTTT
Found at i:15927221 original size:21 final size:21
Alignment explanation
Indices: 15927176--15927221 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
15927166 ATATTAAATT
* **
15927176 TTTTATTTTTTATTTTTTATT
1 TTTTATTTTTTATTTTTAAAA
15927197 TTTTATTTTTTATTTTTAAAA
1 TTTTATTTTTTATTTTTAAAA
15927218 TTTT
1 TTTT
15927222 TTTGAAGATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (21 bp):
TTTTATTTTTTATTTTTAAAA
Found at i:15927841 original size:15 final size:15
Alignment explanation
Indices: 15927808--15927850 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
15927798 TTATCTCTTA
*
15927808 CATAA-CCATAAA-T
1 CATAATCCATAAACC
*
15927821 CATAATCCCTAAACC
1 CATAATCCATAAACC
15927836 CATAATCCATAAACC
1 CATAATCCATAAACC
15927851 TTAAAATAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 5 0.20
14 6 0.24
15 14 0.56
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.21
Consensus pattern (15 bp):
CATAATCCATAAACC
Found at i:15927855 original size:22 final size:22
Alignment explanation
Indices: 15927813--15927898 Score: 52
Period size: 22 Copynumber: 4.0 Consensus size: 22
15927803 TCTTACATAA
*
15927813 CCATAAATCATAATCCCTAAAC
1 CCATAAATCATAAACCCTAAAC
* *
15927835 CCAT-AATCCATAAACCTTAAAA
1 CCATAAAT-CATAAACCCTAAAC
** * * *
15927857 TAATAACTCATACA-CTTAAAC
1 CCATAAATCATAAACCCTAAAC
* *
15927878 CC-TAAACCTTAAACCCTAAAC
1 CCATAAATCATAAACCCTAAAC
15927899 TATAATGATA
Statistics
Matches: 46, Mismatches: 15, Indels: 7
0.68 0.22 0.10
Matches are distributed among these distances:
20 7 0.15
21 15 0.33
22 22 0.48
23 2 0.04
ACGTcount: A:0.47, C:0.30, G:0.00, T:0.23
Consensus pattern (22 bp):
CCATAAATCATAAACCCTAAAC
Found at i:15927890 original size:14 final size:14
Alignment explanation
Indices: 15927871--15927898 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
15927861 AACTCATACA
15927871 CTTAAACCCTAAAC
1 CTTAAACCCTAAAC
15927885 CTTAAACCCTAAAC
1 CTTAAACCCTAAAC
15927899 TATAATGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.36, G:0.00, T:0.21
Consensus pattern (14 bp):
CTTAAACCCTAAAC
Found at i:15928377 original size:41 final size:40
Alignment explanation
Indices: 15928300--15928386 Score: 111
Period size: 41 Copynumber: 2.1 Consensus size: 40
15928290 TCAAATACAT
15928300 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATGATA
1 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAAT-ATA
* * * **
15928341 TTAAAACAATTATTAAAACAATAGACAAATTGAAAATATA
1 TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA
*
15928381 ATAAAA
1 TTAAAA
15928387 AGTGATTATA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
40 8 0.20
41 32 0.80
ACGTcount: A:0.66, C:0.07, G:0.05, T:0.23
Consensus pattern (40 bp):
TTAAAACAAATATTAAAACAAGAAACAAATAAAAAATATA
Found at i:15928726 original size:41 final size:41
Alignment explanation
Indices: 15928588--15928741 Score: 195
Period size: 41 Copynumber: 3.8 Consensus size: 41
15928578 ATTATCTGAC
* * * *
15928588 TTTTAGCGGCGTTTTATCG-AAAGCGCCGCTACTGCTCTGGT
1 TTTTAGCGGCGTTTT-TGGTAAAGCGCCGCTAATGTTTTGGT
**
15928629 TTTTAGCGGCG-TTTTACTAAAAGCGCCGCTAATGTTTTGGT
1 TTTTAGCGGCGTTTTTGGT-AAAGCGCCGCTAATGTTTTGGT
15928670 TTTTAGCGGCGTTTTTGGTAAAGCGCCGCTAATGTTTTGGT
1 TTTTAGCGGCGTTTTTGGTAAAGCGCCGCTAATGTTTTGGT
* * *
15928711 TTTTAGCGGCATTTTTGGTAAAACGACGCTA
1 TTTTAGCGGCGTTTTTGGTAAAGCGCCGCTA
15928742 TTGCTCCGTT
Statistics
Matches: 100, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 3 0.03
41 91 0.91
42 5 0.05
ACGTcount: A:0.18, C:0.18, G:0.26, T:0.38
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTTGGTAAAGCGCCGCTAATGTTTTGGT
Found at i:15929042 original size:81 final size:80
Alignment explanation
Indices: 15928907--15929130 Score: 369
Period size: 79 Copynumber: 2.8 Consensus size: 80
15928897 AAGTATTGAC
*
15928907 TTTTAATTGGTTATATTATGCATTGATAGTATCAATACACTGTCGCAATTATGGATTGACTATTT
1 TTTTAATTGGTTATATTATGGATTGATAGTATCAATACACTGTCGCAATTATGGATTGACT-TTT
* *
15928972 TTTTTTTCTAATAATA
65 TTTTTTCCTAACAATA
* *
15928988 TTTTAATTGGTTATATTATGGATAGATAGTATCAATACACTGTGGCAATTATGGATTGAC-TTTT
1 TTTTAATTGGTTATATTATGGATTGATAGTATCAATACACTGTCGCAATTATGGATTGACTTTTT
15929052 TTTTTCCTAACAATA
66 TTTTTCCTAACAATA
* *
15929067 TTTTATTTGGTTATATTATGGATTGATAGTATCAATACACTGTCACAATTATGGATTGACTTTT
1 TTTTAATTGGTTATATTATGGATTGATAGTATCAATACACTGTCGCAATTATGGATTGACTTTT
15929131 AATTTTTTTT
Statistics
Matches: 133, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
79 73 0.55
80 3 0.02
81 57 0.43
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.46
Consensus pattern (80 bp):
TTTTAATTGGTTATATTATGGATTGATAGTATCAATACACTGTCGCAATTATGGATTGACTTTTT
TTTTTCCTAACAATA
Found at i:15930553 original size:43 final size:43
Alignment explanation
Indices: 15930505--15930611 Score: 151
Period size: 43 Copynumber: 2.5 Consensus size: 43
15930495 TATTTGAAAA
*
15930505 AAACGCCGCTAAAAGTCATGACCTTTAGCGGCGCTTTTACCAC
1 AAACGCCGCTAAAAGTCATGACCTTTAGCGGCACTTTTACCAC
* ** ***
15930548 AAACGCCACTAAAAGTCATGGTCTTTAGCGGCACTTTTTTTAC
1 AAACGCCGCTAAAAGTCATGACCTTTAGCGGCACTTTTACCAC
15930591 AAACGCCGCTAAAAGTCATGA
1 AAACGCCGCTAAAAGTCATGA
15930612 AATTTTAAAA
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
AAACGCCGCTAAAAGTCATGACCTTTAGCGGCACTTTTACCAC
Found at i:15930751 original size:6 final size:6
Alignment explanation
Indices: 15930740--15930793 Score: 56
Period size: 6 Copynumber: 8.7 Consensus size: 6
15930730 ATTCATTATC
* *
15930740 AAATAA AAATAA AAATAA AAATATA GAATCAA AACT-A AAATAA ATAATAA
1 AAATAA AAATAA AAATAA AAATA-A AAAT-AA AAATAA AAATAA A-AATAA
15930790 AAAT
1 AAAT
15930794 TAGATTAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
5 4 0.10
6 22 0.55
7 13 0.32
8 1 0.03
ACGTcount: A:0.74, C:0.04, G:0.02, T:0.20
Consensus pattern (6 bp):
AAATAA
Found at i:15935207 original size:7 final size:7
Alignment explanation
Indices: 15935195--15935316 Score: 68
Period size: 7 Copynumber: 17.1 Consensus size: 7
15935185 ACTAATTAAT
15935195 CTAAACC
1 CTAAACC
15935202 CTAAACC
1 CTAAACC
*
15935209 TCTTAACC
1 -CTAAACC
* *
15935217 CTTATCC
1 CTAAACC
*
15935224 CATAAACA
1 C-TAAACC
*
15935232 CTAAACT
1 CTAAACC
15935239 CTAAACC
1 CTAAACC
*
15935246 CTTAACC
1 CTAAACC
*
15935253 CTTAACC
1 CTAAACC
*
15935260 CCAAACC
1 CTAAACC
*
15935267 CTTACACC
1 C-TAAACC
*
15935275 TTAAACTC
1 CTAAAC-C
15935283 C--AACC
1 CTAAACC
*
15935288 CTAACCC
1 CTAAACC
*
15935295 CTAAATC
1 CTAAACC
* *
15935302 ATAATCC
1 CTAAACC
15935309 CTAAACC
1 CTAAACC
15935316 C
1 C
15935317 ATAATTCATC
Statistics
Matches: 86, Mismatches: 23, Indels: 12
0.71 0.19 0.10
Matches are distributed among these distances:
5 2 0.02
6 3 0.03
7 66 0.77
8 15 0.17
ACGTcount: A:0.37, C:0.41, G:0.00, T:0.22
Consensus pattern (7 bp):
CTAAACC
Found at i:15935366 original size:7 final size:7
Alignment explanation
Indices: 15935354--15935451 Score: 61
Period size: 7 Copynumber: 13.4 Consensus size: 7
15935344 AGTTAACTCC
*
15935354 TAAACCT
1 TAAACCA
15935361 TAAACCA
1 TAAACCA
15935368 TAAACCA
1 TAAACCA
* * *
15935375 TATATCT
1 TAAACCA
*
15935382 TAAACTA
1 TAAACCA
15935389 TAGTTAACTCA
1 TA---AAC-CA
*
15935400 TAAACCT
1 TAAACCA
*
15935407 TAAACCC
1 TAAACCA
15935414 TAAACCA
1 TAAACCA
* * *
15935421 TATATCT
1 TAAACCA
15935428 TAAACCA
1 TAAACCA
15935435 TAAACCA
1 TAAACCA
*
15935442 TAAACTA
1 TAAACCA
15935449 TAA
1 TAA
15935452 TAATAATTAA
Statistics
Matches: 68, Mismatches: 19, Indels: 8
0.72 0.20 0.08
Matches are distributed among these distances:
7 59 0.87
8 3 0.04
10 3 0.04
11 3 0.04
ACGTcount: A:0.48, C:0.23, G:0.01, T:0.28
Consensus pattern (7 bp):
TAAACCA
Found at i:15935385 original size:21 final size:21
Alignment explanation
Indices: 15935359--15935443 Score: 98
Period size: 21 Copynumber: 3.9 Consensus size: 21
15935349 ACTCCTAAAC
15935359 CTTAAACCATAAACCATATAT
1 CTTAAACCATAAACCATATAT
* * *
15935380 CTTAAACTATAGTTAACTCATAAAC
1 CTTAAACCATA---AAC-CATATAT
*
15935405 CTTAAACCCTAAACCATATAT
1 CTTAAACCATAAACCATATAT
15935426 CTTAAACCATAAACCATA
1 CTTAAACCATAAACCATA
15935444 AACTATAATA
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
21 32 0.62
22 3 0.06
24 3 0.06
25 14 0.27
ACGTcount: A:0.46, C:0.25, G:0.01, T:0.28
Consensus pattern (21 bp):
CTTAAACCATAAACCATATAT
Found at i:15935396 original size:46 final size:46
Alignment explanation
Indices: 15935343--15935432 Score: 162
Period size: 46 Copynumber: 2.0 Consensus size: 46
15935333 CTTCAAATAC
*
15935343 TAGTTAACTCCTAAACCTTAAACCATAAACCATATATCTTAAACTA
1 TAGTTAACTCATAAACCTTAAACCATAAACCATATATCTTAAACTA
*
15935389 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAAC
1 TAGTTAACTCATAAACCTTAAACCATAAACCATATATCTTAAAC
15935433 CATAAACCAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.43, C:0.24, G:0.02, T:0.30
Consensus pattern (46 bp):
TAGTTAACTCATAAACCTTAAACCATAAACCATATATCTTAAACTA
Found at i:15935783 original size:81 final size:82
Alignment explanation
Indices: 15935608--15935786 Score: 265
Period size: 82 Copynumber: 2.2 Consensus size: 82
15935598 GTTATATGAC
* * *
15935608 TTTTAGTGGCGTTTTACCAAAAGCGCCGCTAATGCTTTGGTTTTTAGCGGCGTTTTTTCAAAAGC
1 TTTTAGTGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGATTTTTAGCGGCGTTTTTTCAAAAGC
15935673 GCCGCTAATGCTCTGGT
66 GCCGCTAATGCTCTGGT
* *
15935690 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCT-ATTTTTTGCGGCGTTTTTTACTAAAA
1 TTTTAGTGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGATTTTTAGCGGCGTTTTTT-C-AAAA
*
15935754 -CGCCGCTATTGCTCT-GT
64 GCGCCGCTAATGCTCTGGT
15935771 TTTTAGTGGCGTTTTT
1 TTTTAGTGGCGTTTTT
15935787 GGTAAAACGC
Statistics
Matches: 88, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
81 34 0.39
82 50 0.57
83 4 0.05
ACGTcount: A:0.17, C:0.21, G:0.22, T:0.40
Consensus pattern (82 bp):
TTTTAGTGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGATTTTTAGCGGCGTTTTTTCAAAAGC
GCCGCTAATGCTCTGGT
Found at i:15935786 original size:41 final size:40
Alignment explanation
Indices: 15935608--15935786 Score: 234
Period size: 41 Copynumber: 4.4 Consensus size: 40
15935598 GTTATATGAC
* * *
15935608 TTTTAGTGGCGTTTTACCAAAAGCGCCGCTAATGCTTTGGT
1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCT-GT
*
15935649 TTTTAGCGGCGTTTTTTCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCT-GT
*
15935690 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTAT
1 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGT
* * *
15935730 TTTTTGCGGCGTTTTTTACTAAAA-CGCCGCTATTGCTCTGT
1 TTTTAGCGGCG-TTTTT-CCAAAAGCGCCGCTAATGCTCTGT
*
15935771 TTTTAGTGGCGTTTTT
1 TTTTAGCGGCGTTTTT
15935787 GGTAAAACGC
Statistics
Matches: 124, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
40 16 0.13
41 103 0.83
42 5 0.04
ACGTcount: A:0.17, C:0.21, G:0.22, T:0.40
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGT
Found at i:15935793 original size:40 final size:40
Alignment explanation
Indices: 15935608--15935816 Score: 226
Period size: 41 Copynumber: 5.1 Consensus size: 40
15935598 GTTATATGAC
* * * *
15935608 TTTTAGTGGCGTTTTACCAAAAGCGCCGCTAATGCTTTGGT
1 TTTTAGCGGCGTTTTTCTAAAAGCGCCGCTAATGCTCT-GT
15935649 TTTTAGCGGCGTTTTT-TCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTTCT-AAAAGCGCCGCTAATGCTCT-GT
* *
15935690 TTTTAGCGGCGTTTTTCCAAAAGCGCCGCTAATGCTCTAT
1 TTTTAGCGGCGTTTTTCTAAAAGCGCCGCTAATGCTCTGT
* *
15935730 TTTTTGCGGCGTTTTTTACTAAAA-CGCCGCTATTGCTCTGT
1 TTTTAGCGGCG-TTTTT-CTAAAAGCGCCGCTAATGCTCTGT
* * * *
15935771 TTTTAGTGGCGTTTTTGGTAAAA-CGCCGCTATTGCTATGT
1 TTTTAGCGGCGTTTTT-CTAAAAGCGCCGCTAATGCTCTGT
15935811 GTTTTA
1 -TTTTA
15935817 CAATTTTTGC
Statistics
Matches: 148, Mismatches: 15, Indels: 10
0.86 0.09 0.06
Matches are distributed among these distances:
40 37 0.25
41 106 0.72
42 5 0.03
ACGTcount: A:0.18, C:0.20, G:0.22, T:0.40
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTTCTAAAAGCGCCGCTAATGCTCTGT
Found at i:15938907 original size:15 final size:15
Alignment explanation
Indices: 15938889--15938940 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
15938879 TTATAATAAT
15938889 TATATTATTAAATTA
1 TATATTATTAAATTA
**
15938904 TATATTATTTTATTA
1 TATATTATTAAATTA
*
15938919 TAT-TGTATTAAATAA
1 TATAT-TATTAAATTA
15938934 TA-ATTAT
1 TATATTAT
15938941 GTTAAAATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
14 4 0.13
15 26 0.87
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (15 bp):
TATATTATTAAATTA
Found at i:15938990 original size:26 final size:25
Alignment explanation
Indices: 15938953--15939023 Score: 72
Period size: 26 Copynumber: 2.8 Consensus size: 25
15938943 TAAAATATGA
** * *
15938953 TAAAATTATTTATTATTATTTTTAT
1 TAAAATTATTTAACAATAATTTTAT
15938978 TAAAATATATTTAACAATAATTTTAT
1 TAAAAT-TATTTAACAATAATTTTAT
*
15939004 TAAAATT-TAATAACAATAAT
1 TAAAATTAT-TTAACAATAAT
15939024 CATCAACCTA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
24 1 0.03
25 17 0.44
26 21 0.54
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (25 bp):
TAAAATTATTTAACAATAATTTTAT
Found at i:15939023 original size:25 final size:26
Alignment explanation
Indices: 15938972--15939023 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15938962 TTATTATTAT
*
15938972 TTTTATTAAAATATATTTAACAATAA
1 TTTTATTAAAATATATATAACAATAA
*
15938998 TTTTATTAAAATTTA-ATAACAATAA
1 TTTTATTAAAATATATATAACAATAA
15939023 T
1 T
15939024 CATCAACCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (26 bp):
TTTTATTAAAATATATATAACAATAA
Found at i:15951857 original size:25 final size:25
Alignment explanation
Indices: 15951826--15951876 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
15951816 TGAAAAGAGC
15951826 AACAGAAGCTTCATTGAAAAGTCAG
1 AACAGAAGCTTCATTGAAAAGTCAG
15951851 AACAGAAGCTTCATTGAAAAGTCAG
1 AACAGAAGCTTCATTGAAAAGTCAG
15951876 A
1 A
15951877 CTACTTGGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.45, C:0.16, G:0.20, T:0.20
Consensus pattern (25 bp):
AACAGAAGCTTCATTGAAAAGTCAG
Found at i:15953210 original size:18 final size:19
Alignment explanation
Indices: 15953182--15953234 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
15953172 AACAATAATT
15953182 TTAAAATAAATTATAAAATA
1 TTAAAA-AAATTATAAAATA
* *
15953202 -TAATAAAATTCTAAAATA
1 TTAAAAAAATTATAAAATA
*
15953220 TTAAAAAAATCATAA
1 TTAAAAAAATTATAA
15953235 TTTATTTTTC
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
18 12 0.44
19 15 0.56
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (19 bp):
TTAAAAAAATTATAAAATA
Found at i:15960546 original size:51 final size:51
Alignment explanation
Indices: 15960404--15960555 Score: 241
Period size: 51 Copynumber: 3.0 Consensus size: 51
15960394 CAGTTACAAG
* ** * * *
15960404 TGATAAGTGGTAGCCTCCGCTACACTTATCTGATCAGTGATAAGTGACAAG
1 TGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGATAAC
15960455 TGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGATAAC
1 TGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGATAAC
*
15960506 TGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGCGATAA
1 TGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGATAA
15960556 ATGTGATCAG
Statistics
Matches: 94, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 94 1.00
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (51 bp):
TGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGATAAC
Found at i:15962663 original size:7 final size:7
Alignment explanation
Indices: 15962651--15962680 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
15962641 GTATAGGGTT
15962651 TTTAGGG
1 TTTAGGG
15962658 TTTAGGG
1 TTTAGGG
15962665 TTTAGGG
1 TTTAGGG
15962672 TTTAGGG
1 TTTAGGG
15962679 TT
1 TT
15962681 ATATTATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.13, C:0.00, G:0.40, T:0.47
Consensus pattern (7 bp):
TTTAGGG
Found at i:15963117 original size:27 final size:27
Alignment explanation
Indices: 15963079--15963197 Score: 139
Period size: 27 Copynumber: 4.4 Consensus size: 27
15963069 AACACATTAG
15963079 GAAAGAATAGCCTTTATGGCAAACTAT
1 GAAAGAATAGCCTTTATGGCAAACTAT
* *
15963106 GAAATAATAGCCTTTATGACAAACTAT
1 GAAAGAATAGCCTTTATGGCAAACTAT
* * * * *
15963133 GAAATAATAGTCTTTGTGTCGAACTAT
1 GAAAGAATAGCCTTTATGGCAAACTAT
* * *
15963160 GAAAGAATAGCCATTGTGGCAAATTAT
1 GAAAGAATAGCCTTTATGGCAAACTAT
*
15963187 GAAGGAATAGC
1 GAAAGAATAGC
15963198 TTTTGGTGGC
Statistics
Matches: 79, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 79 1.00
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.28
Consensus pattern (27 bp):
GAAAGAATAGCCTTTATGGCAAACTAT
Found at i:15970858 original size:96 final size:96
Alignment explanation
Indices: 15970659--15971026 Score: 356
Period size: 96 Copynumber: 3.8 Consensus size: 96
15970649 GGGTGAATTG
* * * *
15970659 CCGATGCCATGTTCCAAACATGGTCTTACACTTG-CTCACATGTCGA-GGCCGATGCCATGTCCC
1 CCGATGCCATCTGCCAAACATGATCTTACAC-TGACTCACATATC-ATGGCCGATGCCATGTCCC
** **
15970722 AGATGTGGTCTTACACTGGCTCTCA-TA-ATGGGG
64 AGACATGGTCTTACACTGGCTCTCATTACAT--TA
* ** * *
15970755 CCAATGCCATCTGCCCGACATTATCTTACACT-AGCGT-ACATATCAAT-GTCGATGCCATGTCC
1 CCGATGCCATCTGCCAAACATGATCTTACACTGA-C-TCACATATC-ATGGCCGATGCCATGTCC
*
15970817 CAGACATGGTCTTACAATGGCTCTCATTACATTA
63 CAGACATGGTCTTACACTGGCTCTCATTACATTA
* * * * * * *
15970851 CCGATGCCATGTTCCAAACATGGTCTTACACTGACTCTCATATCGTGGCCAATGCCATGTCCCAA
1 CCGATGCCATCTGCCAAACATGATCTTACACTGACTCACATATCATGGCCGATGCCATGTCCCAG
15970916 ACATGGTCTTACACTGGCTCTCATTACATTA
66 ACATGGTCTTACACTGGCTCTCATTACATTA
* * * * *
15970947 CTGATGCCATGTTCCAAACATGGTCTTACACTGACTCTCATAT-AGTGGCCGATGCCATGTCCCA
1 CCGATGCCATCTGCCAAACATGATCTTACACTGACTCACATATCA-TGGCCGATGCCATGTCCCA
* *
15971011 GATATAGTCTTACACT
65 GACATGGTCTTACACT
15971027 AGCACACATA
Statistics
Matches: 228, Mismatches: 34, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
95 3 0.01
96 219 0.96
97 4 0.02
98 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (96 bp):
CCGATGCCATCTGCCAAACATGATCTTACACTGACTCACATATCATGGCCGATGCCATGTCCCAG
ACATGGTCTTACACTGGCTCTCATTACATTA
Found at i:15970999 original size:144 final size:142
Alignment explanation
Indices: 15970660--15971026 Score: 386
Period size: 144 Copynumber: 2.5 Consensus size: 142
15970650 GGTGAATTGC
* * *
15970660 CGATGCCATGTTCCAAACATGGTCTTACACTTGCTCACATGTCGAGGCCGATGCCATGTCCCAGA
1 CGATGCCATGTTCCAAACATGGTCTTACAC-TGCTCTCAT-TAGTGGCCGATGCCATGTCCCAGA
* * * *
15970725 TGTGGTCTTACACTGGCTCTCATAATGGGGCCAATGCCATCTGCCCGACATTATCTTACACTAGC
64 TATGGTCTTACACTGACTCTCATAATGGGGCCAATGCCATCTGCCCAACATGATCTTACACTAGC
15970790 GTACATATCAATGT
129 GTACATATCAATGT
* * * * ** * *
15970804 CGATGCCATGTCCCAGACATGGTCTTACAATGGCTCTCATTACATTACCGATGCCATGTTCCAAA
1 CGATGCCATGTTCCAAACATGGTCTTACACT-GCTCTCATTA-GTGGCCGATGCCATGTCCCAGA
* * * * *
15970869 CATGGTCTTACACTGACTCTCAT-ATCGTGGCCAATGCCATGT-CCCAAACATGGTCTTACACTG
64 TATGGTCTTACACTGACTCTCATAAT-GGGGCCAATGCCATCTGCCC-AACATGATCTTACACTA
*
15970932 GC-T-C-TCATTACAT-T
127 GCGTACAT-ATCA-ATGT
15970946 ACTGATGCCATGTTCCAAACATGGTCTTACACTGACTCTCATATAGTGGCCGATGCCATGTCCCA
1 -C-GATGCCATGTTCCAAACATGGTCTTACACTG-CTCTCAT-TAGTGGCCGATGCCATGTCCCA
*
15971011 GATATAGTCTTACACT
62 GATATGGTCTTACACT
15971027 AGCACACATA
Statistics
Matches: 182, Mismatches: 31, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
141 1 0.01
142 5 0.03
143 12 0.07
144 162 0.89
145 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29
Consensus pattern (142 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTGCTCTCATTAGTGGCCGATGCCATGTCCCAGATA
TGGTCTTACACTGACTCTCATAATGGGGCCAATGCCATCTGCCCAACATGATCTTACACTAGCGT
ACATATCAATGT
Found at i:15971037 original size:48 final size:48
Alignment explanation
Indices: 15970658--15971026 Score: 309
Period size: 48 Copynumber: 7.7 Consensus size: 48
15970648 AGGGTGAATT
* * * * * *
15970658 GCCGATGCCATGTTCCAAACATGGTCTTACACTTGCTCACATGTCGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATAGTG
* ** *
15970706 GCCGATGCCATGTCCCAGATGTGGTCTTACACTGGCTCTCATA-ATGGG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATA-GTG
* * * ** * * *
15970754 GCCAATGCCATCTGCCC-GACATTATCTTACACTAGCGT-ACATATCAAT-
1 GCCGATGCCATGT-CCCAAACATGGTCTTACACTGGC-TCTCATAT-AGTG
* * * * *
15970802 GTCGATGCCATGTCCCAGACATGGTCTTACAATGGCTCTCAT-TACATT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATA-GTG
* * * *
15970850 ACCGATGCCATGTTCCAAACATGGTCTTACACTGACTCTCATATCGTG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATAGTG
* * *
15970898 GCCAATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAT-TACATT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATA-GTG
* * * *
15970946 ACTGATGCCATGTTCCAAACATGGTCTTACACTGACTCTCATATAGTG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATAGTG
* * *
15970994 GCCGATGCCATGTCCCAGATATAGTCTTACACT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACT
15971027 AGCACACATA
Statistics
Matches: 253, Mismatches: 56, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
46 1 0.00
47 8 0.03
48 236 0.93
49 7 0.03
50 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATAGTG
Found at i:15979592 original size:48 final size:47
Alignment explanation
Indices: 15979537--15979998 Score: 351
Period size: 48 Copynumber: 9.6 Consensus size: 47
15979527 GTGAATTGCC
* * * *
15979537 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCT
1 GATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATATC-ATGCT
* * * * * *
15979585 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTTAATGTT
1 GATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCAT-ATCATGCT
* * * * *
15979633 GATGTCGTGTCCCAGACATGGTTTTACACTGGCTCTCATAAT-GTGGCT
1 GATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCAT-ATCAT-GCT
* * * * * * * *
15979681 GATACCATG-TCTCAAACATCGTCTTACACTAGCGCACATATCAATACC
1 GATGCCATGTTC-CAGACATGGTCTTACACTGGCTCTCATATC-ATGCT
* *
15979729 GATGCCATG-TCCTAGACATGGTCTTACATTGGCTCTCAT-TACATTGAT
1 GATGCCATGTTCC-AGACATGGTCTTACACTGGCTCTCATAT-CA-TGCT
* * * * *
15979777 GCTACCATATTCCAAACATGGTCTTACACTGGCTCTCATATCATGGCC
1 GATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATATCAT-GCT
* * * *
15979825 GATGCCATGTCCCAGACATGGTCTTACACTAG-TGCACATATCAATGCC
1 GATGCCATGTTCCAGACATGGTCTTACACTGGCT-CTCATATC-ATGCT
*
15979873 GATGTCATGTTCCAGACATGGTCTTACACTGGCTCTCAT-TACATTGCT
1 GATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATAT-CA-TGCT
* * * * *
15979921 GATACCATGTTCCAAACATGGTCTTACACTGACTCTCATATCGTGGCA
1 GATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATATCAT-GCT
** * *
15979969 GATGCCATGCCCCAGATATGGTTTTACACT
1 GATGCCATGTTCCAGACATGGTCTTACACT
15979999 AGCACACATA
Statistics
Matches: 324, Mismatches: 72, Indels: 36
0.75 0.17 0.08
Matches are distributed among these distances:
47 12 0.04
48 302 0.93
49 10 0.03
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (47 bp):
GATGCCATGTTCCAGACATGGTCTTACACTGGCTCTCATATCATGCT
Found at i:15979804 original size:144 final size:144
Alignment explanation
Indices: 15979537--15980011 Score: 535
Period size: 144 Copynumber: 3.3 Consensus size: 144
15979527 GTGAATTGCC
* * * * * * ** * *
15979537 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCTGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATACCGATGCCATGTTCCAGAC
* * * ** * * * * *
15979602 ATGGTCTTACACTAGCTCTCGTCTTA-A-TGTTGATGTCGTGTCCCAGACATGGTTTTACACTGG
66 ATGGTCTTACACTGGCTCTC--ATTACATTGATGATACCATATTCCAAACATGGTCTTACACTGG
*
15979665 CTCTCATAAT-GTGGCT
129 CTCTCAT-ATCGTGGCA
* * * *
15979681 GATACCATGTCTCAAACATCGTCTTACACTAGCGCACATATCAATACCGATGCCATG-TCCTAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATACCGATGCCATGTTCC-AGA
* *
15979745 CATGGTCTTACATTGGCTCTCATTACATTGATGCTACCATATTCCAAACATGGTCTTACACTGGC
65 CATGGTCTTACACTGGCTCTCATTACATTGATGATACCATATTCCAAACATGGTCTTACACTGGC
* *
15979810 TCTCATATCATGGCC
130 TCTCATATCGTGGCA
* * *
15979825 GATGCCATGTCCCAGACATGGTCTTACACTAGTGCACATATCAATGCCGATGTCATGTTCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATACCGATGCCATGTTCCAGAC
* * *
15979890 ATGGTCTTACACTGGCTCTCATTACATTGCTGATACCATGTTCCAAACATGGTCTTACACTGACT
66 ATGGTCTTACACTGGCTCTCATTACATTGATGATACCATATTCCAAACATGGTCTTACACTGGCT
15979955 CTCATATCGTGGCA
131 CTCATATCGTGGCA
* * * *
15979969 GATGCCATGCCCCAGATATGGTTTTACACTAGCACACATATCA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCA
15980012 CCCAAATGTC
Statistics
Matches: 281, Mismatches: 45, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
142 3 0.01
143 5 0.02
144 270 0.96
145 3 0.01
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (144 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATACCGATGCCATGTTCCAGAC
ATGGTCTTACACTGGCTCTCATTACATTGATGATACCATATTCCAAACATGGTCTTACACTGGCT
CTCATATCGTGGCA
Found at i:15982633 original size:45 final size:45
Alignment explanation
Indices: 15982534--15982644 Score: 134
Period size: 45 Copynumber: 2.5 Consensus size: 45
15982524 AACGGTAGTA
* * *
15982534 GTAACAGTAACAGTAACAGTATTCAACACATAAAGTGCTGAATCT
1 GTAACAGTAACGGTAACAGTATTCAACACACAAAGTGCTGAATCG
* * * *
15982579 ATAATAGTAATGGTAACAGTATTCTACACACAAAGTG-TCGAATCG
1 GTAACAGTAACGGTAACAGTATTCAACACACAAAGTGCT-GAATCG
*
15982624 GTAACAGTAACGGTAATAGTA
1 GTAACAGTAACGGTAACAGTA
15982645 ACAGTAGTCG
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
44 1 0.02
45 53 0.98
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.25
Consensus pattern (45 bp):
GTAACAGTAACGGTAACAGTATTCAACACACAAAGTGCTGAATCG
Found at i:15984061 original size:25 final size:23
Alignment explanation
Indices: 15984017--15984077 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 23
15984007 AGTTTGATTT
*
15984017 ATTTAATAATATAATATCATTATA
1 ATTTAATTATATAATATCA-TATA
15984041 ATTTAATTATCATAA-ATTCATATA
1 ATTTAATTAT-ATAATA-TCATATA
*
15984065 ATATAAATTATAT
1 AT-TTAATTATAT
15984078 TTAAATATCA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 18 0.56
25 14 0.44
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (23 bp):
ATTTAATTATATAATATCATATA
Found at i:15984080 original size:35 final size:35
Alignment explanation
Indices: 15984025--15984104 Score: 103
Period size: 35 Copynumber: 2.3 Consensus size: 35
15984015 TTATTTAATA
* *
15984025 ATATAATAT-CATTATAATTTAATTATCATAAATT
1 ATATAATATAAATTATAATTTAAATATCATAAATT
*
15984059 CATATAATATAAATTAT-ATTTAAATATCATTAATT
1 -ATATAATATAAATTATAATTTAAATATCATAAATT
15984094 ATATAAT-TAAA
1 ATATAATATAAA
15984105 ACAAATAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
33 4 0.10
34 7 0.17
35 25 0.61
36 5 0.12
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (35 bp):
ATATAATATAAATTATAATTTAAATATCATAAATT
Found at i:15988837 original size:5 final size:5
Alignment explanation
Indices: 15988827--15988866 Score: 80
Period size: 5 Copynumber: 8.0 Consensus size: 5
15988817 AGTATAAATA
15988827 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
15988867 AAAAGAAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:15991266 original size:84 final size:84
Alignment explanation
Indices: 15991125--15991281 Score: 269
Period size: 84 Copynumber: 1.9 Consensus size: 84
15991115 AAGTAATGAC
* *
15991125 AGTTCTAGAAGAGATAGCAGATTATTTTGAAGATTACTCGGGATACGCAATGTTGCTATTAAGGA
1 AGTTCTAGAAGAGATAGCAGATTATTTTGAAGATTACTCGGGATACGCAATGCTGCTATTAAAGA
15991190 AGAAGTTAGGTAGTAGGAT
66 AGAAGTTAGGTAGTAGGAT
* * *
15991209 AGTTCTAGAAGAGATATCAGATTATTTTGAAGATTATTCGGGATACGTAATGCTGCTATTAAAGA
1 AGTTCTAGAAGAGATAGCAGATTATTTTGAAGATTACTCGGGATACGCAATGCTGCTATTAAAGA
15991274 AGAAGTTA
66 AGAAGTTA
15991282 TTCACGAGTA
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
84 68 1.00
ACGTcount: A:0.36, C:0.08, G:0.25, T:0.31
Consensus pattern (84 bp):
AGTTCTAGAAGAGATAGCAGATTATTTTGAAGATTACTCGGGATACGCAATGCTGCTATTAAAGA
AGAAGTTAGGTAGTAGGAT
Found at i:15994416 original size:30 final size:30
Alignment explanation
Indices: 15994377--15994438 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
15994367 ATTTATTTTA
*
15994377 TTGTTAATTTTCTTATTATTTTA-AAGGCAT
1 TTGTAAATTTTCTTATTATTTTAGAA-GCAT
*
15994407 TTGTAAATTTTTTTATTATTTTAGAAGCAT
1 TTGTAAATTTTCTTATTATTTTAGAAGCAT
15994437 TT
1 TT
15994439 AATTGTTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 27 0.93
31 2 0.07
ACGTcount: A:0.27, C:0.05, G:0.10, T:0.58
Consensus pattern (30 bp):
TTGTAAATTTTCTTATTATTTTAGAAGCAT
Found at i:15995386 original size:5 final size:5
Alignment explanation
Indices: 15995376--15995415 Score: 80
Period size: 5 Copynumber: 8.0 Consensus size: 5
15995366 AGTATAAATA
15995376 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
15995416 AAAACAAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:15995515 original size:25 final size:25
Alignment explanation
Indices: 15995444--15995524 Score: 65
Period size: 25 Copynumber: 3.1 Consensus size: 25
15995434 GTAAATAAAT
*
15995444 AGAAAAAGAAAAAGAAAGCTAAAGCAGAA
1 AGAAAAAGAGAAAGAAAG--AAAG-A-AA
* * *
15995473 ATGAAACAGGGAAGGAAAGAAAGAAA
1 A-GAAAAAGAGAAAGAAAGAAAGAAA
*
15995499 AGAAAAAGAGAAAGAAAG-GAGAAA
1 AGAAAAAGAGAAAGAAAGAAAGAAA
15995523 AG
1 AG
15995525 GCTAGGATTT
Statistics
Matches: 43, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
24 7 0.16
25 14 0.33
26 3 0.07
27 1 0.02
28 4 0.09
29 1 0.02
30 13 0.30
ACGTcount: A:0.67, C:0.04, G:0.27, T:0.02
Consensus pattern (25 bp):
AGAAAAAGAGAAAGAAAGAAAGAAA
Found at i:15997439 original size:21 final size:22
Alignment explanation
Indices: 15997389--15997442 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
15997379 TGCAGGGTTC
* *
15997389 ACACGCCCGTATGGTCCGAGGG
1 ACACGCCCGTGTGATCCGAGGG
* *
15997411 ACATGCCCGTGTGATCCTA-GG
1 ACACGCCCGTGTGATCCGAGGG
15997432 ACACGCCCGTG
1 ACACGCCCGTG
15997443 CTACAGGCCG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 12 0.44
22 15 0.56
ACGTcount: A:0.19, C:0.33, G:0.31, T:0.17
Consensus pattern (22 bp):
ACACGCCCGTGTGATCCGAGGG
Found at i:16002123 original size:4 final size:4
Alignment explanation
Indices: 16002114--16002168 Score: 83
Period size: 4 Copynumber: 13.2 Consensus size: 4
16002104 TAATTAACCC
*
16002114 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GCATAT GCAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT G--TAT GTAT GTAT
16002164 GTAT G
1 GTAT G
16002169 GTTATCAAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
4 43 0.91
6 4 0.09
ACGTcount: A:0.25, C:0.04, G:0.25, T:0.45
Consensus pattern (4 bp):
GTAT
Found at i:16008813 original size:25 final size:24
Alignment explanation
Indices: 16008781--16008830 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
16008771 CAATATGACT
16008781 TAACTTTTTTTTTGTTTCCCAAGG
1 TAACTTTTTTTTTGTTTCCCAAGG
16008805 TAACTTTTTTTTTGTTTCCCAAGG
1 TAACTTTTTTTTTGTTTCCCAAGG
16008829 TA
1 TA
16008831 TTGATTTGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.18, C:0.16, G:0.12, T:0.54
Consensus pattern (24 bp):
TAACTTTTTTTTTGTTTCCCAAGG
Found at i:16010336 original size:5 final size:5
Alignment explanation
Indices: 16010326--16010359 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
16010316 AAGAATTAAG
16010326 TATAT TATAT TATAT TATAT TATAT TATAT TATA
1 TATAT TATAT TATAT TATAT TATAT TATAT TATA
16010360 ATAAAACAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:16011442 original size:40 final size:40
Alignment explanation
Indices: 16011324--16011455 Score: 137
Period size: 37 Copynumber: 3.4 Consensus size: 40
16011314 TTCGAGTCGC
* *
16011324 TGAGACACTAGGTGTCAATTTATTACTTCGAATTTATTCGA
1 TGAGACACTAGGTGTCAATTTACTACTTCGAA-TTATCCGA
* * ** *
16011365 TGAGGCACTAGGTGCCAATTTACT--TT-GGTTTAACCGA
1 TGAGACACTAGGTGTCAATTTACTACTTCGAATTATCCGA
*
16011402 TGAGATACT-GAGTGTCAATTTACTACTTCGAATTATCCGA
1 TGAGACACTAG-GTGTCAATTTACTACTTCGAATTATCCGA
*
16011442 TGAGGCACTAGGTG
1 TGAGACACTAGGTG
16011456 CCAAACTAGT
Statistics
Matches: 71, Mismatches: 15, Indels: 11
0.73 0.15 0.11
Matches are distributed among these distances:
36 1 0.01
37 25 0.35
38 1 0.01
39 4 0.06
40 18 0.25
41 22 0.31
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (40 bp):
TGAGACACTAGGTGTCAATTTACTACTTCGAATTATCCGA
Found at i:16011774 original size:17 final size:18
Alignment explanation
Indices: 16011749--16011782 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
16011739 TGAATTGAAT
16011749 ATTGAATGACT-AATGTC
1 ATTGAATGACTGAATGTC
*
16011766 ATTGTATGACTGAATGT
1 ATTGAATGACTGAATGT
16011783 GGTTTTTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (18 bp):
ATTGAATGACTGAATGTC
Found at i:16013906 original size:2 final size:2
Alignment explanation
Indices: 16013899--16013924 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
16013889 GGCAGACTCC
16013899 GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA
16013925 AGTGAAAGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:16017730 original size:22 final size:21
Alignment explanation
Indices: 16017705--16017757 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
16017695 AGTTATAATA
16017705 ATAAATATATATATATACATTT
1 ATAAATATATATAT-TACATTT
**
16017727 ATAAATA-AGTATATTATTTTT
1 ATAAATATA-TATATTACATTT
16017748 AT-AATATATA
1 ATAAATATATA
16017758 ACATGGACAC
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
20 6 0.22
21 9 0.33
22 12 0.44
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (21 bp):
ATAAATATATATATTACATTT
Found at i:16024230 original size:50 final size:50
Alignment explanation
Indices: 16024162--16024258 Score: 185
Period size: 50 Copynumber: 1.9 Consensus size: 50
16024152 TTCTATAATA
16024162 CTTCAATATTTTGATATCATGGCATGCATTTCATAACAAATATATTTCTT
1 CTTCAATATTTTGATATCATGGCATGCATTTCATAACAAATATATTTCTT
*
16024212 CTTCAATATTTTGGTATCATGGCATGCATTTCATAACAAATATATTT
1 CTTCAATATTTTGATATCATGGCATGCATTTCATAACAAATATATTT
16024259 GCCATTTGCT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.32, C:0.15, G:0.09, T:0.43
Consensus pattern (50 bp):
CTTCAATATTTTGATATCATGGCATGCATTTCATAACAAATATATTTCTT
Found at i:16031921 original size:48 final size:48
Alignment explanation
Indices: 16031749--16032175 Score: 265
Period size: 48 Copynumber: 8.9 Consensus size: 48
16031739 GCGATATGAA
* * * **
16031749 AGCCAGTGTAAGACCATGCCTGGGACATGGCATCAGCCTCGATA--CG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTTATATGCG
* * * *
16031795 TGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACACTGGTATATGCG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-T-TTATATGCG
* * * * * * * *
16031845 AGCCACTGTAAGGCTATGTTTGGAACATGGAATCGGCATTTTTATGTG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTTATATGCG
* * ** *
16031893 AGCCAGTGTAATACCATGTCTGGGACATGGCATCGGCCTCAATATACG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTTATATGCG
* * * *
16031941 AGCCAGTGTAAGACCATAT-TTGGATCATGGCATCAGCATTGT-TATGTG
1 AGCCAGTGTAAGACCATGTCTGGGA-CATGGCATCGGCATT-TATATGCG
* * * * * * * **
16031989 AGCCAGTGTAAAACCATATCTAGGTCATGACATCAGCCTCAATATGCG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTTATATGCG
* * ** * **
16032037 AGCCAGTGTAAGGCCATGTTTGAAACATGACATCAACATTGTTATAT--G
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-T-TTATATGCG
* * * * ** * *
16032085 TGTCAGTCTAAGACCATGTCTAGGG-CATGGCATAGGCACCGATGTATGAG
1 AGCCAGTGTAAGACCATGTCT-GGGACATGGCATCGGCA--TTTATATGCG
*
16032135 AGCCACTGTAAGACCATGTCTGGGACATGGCATCGGCATTT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTT
16032176 TACCATTTTG
Statistics
Matches: 282, Mismatches: 84, Indels: 28
0.72 0.21 0.07
Matches are distributed among these distances:
46 32 0.11
47 5 0.02
48 171 0.61
49 9 0.03
50 65 0.23
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (48 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTTATATGCG
Found at i:16031986 original size:96 final size:96
Alignment explanation
Indices: 16031749--16032174 Score: 383
Period size: 96 Copynumber: 4.4 Consensus size: 96
16031739 GCGATATGAA
* ** * * * * * *
16031749 AGCCAGTGTAAGACCATGCCTGGGACATGGCATCAGCCTCGATACGT--GTCAGTGTAAGACCAT
1 AGCCAGTGTAAGGCCATGTTTGGAACATGGCATCAGCATTGTTATGTGAGCCAGTGTAAGACCAT
* **
16031812 GTCTGGGACATGGCATCGACACTGGTATATGCG
66 GTCTGGGACATGGCATCGGC-CT-CAATATGCG
* * * * * *
16031845 AGCCACTGTAAGGCTATGTTTGGAACATGGAATCGGCATTTTTATGTGAGCCAGTGTAATACCAT
1 AGCCAGTGTAAGGCCATGTTTGGAACATGGCATCAGCATTGTTATGTGAGCCAGTGTAAGACCAT
*
16031910 GTCTGGGACATGGCATCGGCCTCAATATACG
66 GTCTGGGACATGGCATCGGCCTCAATATGCG
* * * *
16031941 AGCCAGTGTAAGACCATATTTGGATCATGGCATCAGCATTGTTATGTGAGCCAGTGTAAAACCAT
1 AGCCAGTGTAAGGCCATGTTTGGAACATGGCATCAGCATTGTTATGTGAGCCAGTGTAAGACCAT
* * * * *
16032006 ATCTAGGTCATGACATCAGCCTCAATATGCG
66 GTCTGGGACATGGCATCGGCCTCAATATGCG
* * * * * * *
16032037 AGCCAGTGTAAGGCCATGTTTGAAACATGACATCAACATTGTTATATGTGTCAGTCTAAGACCAT
1 AGCCAGTGTAAGGCCATGTTTGGAACATGGCATCAGCATTGTTATGTGAGCCAGTGTAAGACCAT
* * *
16032102 GTCTAGGG-CATGGCATAGGCAC-CGATGTATGAG
66 GTCT-GGGACATGGCATCGGC-CTC-A-ATATGCG
* * * * *
16032135 AGCCACTGTAAGACCATGTCTGGGACATGGCATCGGCATT
1 AGCCAGTGTAAGGCCATGTTTGGAACATGGCATCAGCATT
16032175 TTACCATTTT
Statistics
Matches: 264, Mismatches: 60, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
96 188 0.71
97 6 0.02
98 70 0.27
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (96 bp):
AGCCAGTGTAAGGCCATGTTTGGAACATGGCATCAGCATTGTTATGTGAGCCAGTGTAAGACCAT
GTCTGGGACATGGCATCGGCCTCAATATGCG
Found at i:16038308 original size:17 final size:17
Alignment explanation
Indices: 16038253--16038310 Score: 71
Period size: 17 Copynumber: 3.2 Consensus size: 17
16038243 ATAAGATAAG
*
16038253 TATTTAATTTAATTTAA
1 TATTAAATTTAATTTAA
*
16038270 TATTAAAGTTATTATCTTAA
1 TATTAAA-TT-TAAT-TTAA
16038290 TATTAAATTTAATTTAA
1 TATTAAATTTAATTTAA
16038307 TATT
1 TATT
16038311 TATTTTGTAG
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
17 14 0.40
18 5 0.14
19 5 0.14
20 11 0.31
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (17 bp):
TATTAAATTTAATTTAA
Found at i:16038354 original size:62 final size:62
Alignment explanation
Indices: 16038286--16038434 Score: 280
Period size: 62 Copynumber: 2.4 Consensus size: 62
16038276 AGTTATTATC
*
16038286 TTAATATTAAATTTAATTTAATATTTATTTTGTAGATAAACATTCTATTATTTTAATAAGAT
1 TTAATATTAAATTAAATTTAATATTTATTTTGTAGATAAACATTCTATTATTTTAATAAGAT
16038348 TTAATATTAAATTAAATTTAATATTTATTTTGTAGATAAACATTCTATTATTTTAATAAGAT
1 TTAATATTAAATTAAATTTAATATTTATTTTGTAGATAAACATTCTATTATTTTAATAAGAT
*
16038410 TTAACATTAAATTAAATTTAATATT
1 TTAATATTAAATTAAATTTAATATT
16038435 AAAATTGATT
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 85 1.00
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.50
Consensus pattern (62 bp):
TTAATATTAAATTAAATTTAATATTTATTTTGTAGATAAACATTCTATTATTTTAATAAGAT
Found at i:16038669 original size:10 final size:11
Alignment explanation
Indices: 16038646--16038675 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
16038636 ACCCACAGGT
*
16038646 AAATTTTTGAA
1 AAATTTTCGAA
16038657 AAATTTTCGAA
1 AAATTTTCGAA
16038668 AAATTTTC
1 AAATTTTC
16038676 TAATTCAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (11 bp):
AAATTTTCGAA
Found at i:16043263 original size:52 final size:52
Alignment explanation
Indices: 16043185--16043288 Score: 208
Period size: 52 Copynumber: 2.0 Consensus size: 52
16043175 TCTGAAAAAG
16043185 ATTTCTCATATTAACATCACCTCAGTATAGCATAAAAAAGAGTTGGATTGTA
1 ATTTCTCATATTAACATCACCTCAGTATAGCATAAAAAAGAGTTGGATTGTA
16043237 ATTTCTCATATTAACATCACCTCAGTATAGCATAAAAAAGAGTTGGATTGTA
1 ATTTCTCATATTAACATCACCTCAGTATAGCATAAAAAAGAGTTGGATTGTA
16043289 CGTACTAGTA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.33
Consensus pattern (52 bp):
ATTTCTCATATTAACATCACCTCAGTATAGCATAAAAAAGAGTTGGATTGTA
Found at i:16044282 original size:7 final size:7
Alignment explanation
Indices: 16044270--16044298 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
16044260 TTTATTGTGT
16044270 TTTAAAG
1 TTTAAAG
16044277 TTTAAAG
1 TTTAAAG
16044284 TTTAAAG
1 TTTAAAG
16044291 TTTAAAG
1 TTTAAAG
16044298 T
1 T
16044299 CGAAAACAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.45
Consensus pattern (7 bp):
TTTAAAG
Found at i:16046777 original size:18 final size:17
Alignment explanation
Indices: 16046756--16046808 Score: 58
Period size: 18 Copynumber: 3.2 Consensus size: 17
16046746 TCTTTCTAGT
16046756 TTATTTTTACTTATTAAA
1 TTATTTTTACTT-TTAAA
16046774 TTATTTTT-C-TTT-AA
1 TTATTTTTACTTTTAAA
*
16046788 TTAATTTTTATTTTTAAA
1 TT-ATTTTTACTTTTAAA
16046806 TTA
1 TTA
16046809 ATTATTTTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
14 4 0.13
15 8 0.27
16 1 0.03
17 5 0.17
18 12 0.40
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (17 bp):
TTATTTTTACTTTTAAA
Found at i:16049908 original size:21 final size:21
Alignment explanation
Indices: 16049882--16049930 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
16049872 ATGTTTTACT
* *
16049882 TTCTGTTTAGCTCTTTCGAGC
1 TTCTGTTCAGCTCTCTCGAGC
16049903 TTCTGTTCAGCTCTCTCGAGC
1 TTCTGTTCAGCTCTCTCGAGC
16049924 TTCTGTT
1 TTCTGTT
16049931 AACAATGTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.08, C:0.27, G:0.18, T:0.47
Consensus pattern (21 bp):
TTCTGTTCAGCTCTCTCGAGC
Found at i:16051756 original size:20 final size:21
Alignment explanation
Indices: 16051733--16051780 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
16051723 TTTGACGAAC
16051733 TGTATTGCAAAAATAC-GAGT
1 TGTATTGCAAAAATACGGAGT
**
16051753 TGTAGAGCAAAAATACGTGAGT
1 TGTATTGCAAAAATACG-GAGT
16051775 TGTATT
1 TGTATT
16051781 ATGAACAAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 14 0.64
22 8 0.36
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (21 bp):
TGTATTGCAAAAATACGGAGT
Found at i:16051961 original size:24 final size:23
Alignment explanation
Indices: 16051931--16052157 Score: 172
Period size: 24 Copynumber: 9.4 Consensus size: 23
16051921 GCGATGAACG
*
16051931 AAAAATTATGCTAGCTCTGCAGC
1 AAAAATTATGCTAGCTGTGCAGC
*
16051954 GAAAAATTATGCTAGTTGTGCAGC
1 -AAAAATTATGCTAGCTGTGCAGC
* *
16051978 AGAAAATTATG-TGAACTGTGCAAC
1 A-AAAATTATGCT-AGCTGTGCAGC
* *
16052002 AGAAAATTTTGTTAGCTGTGCAGC
1 A-AAAATTATGCTAGCTGTGCAGC
*
16052026 AATAAAAATTATGCTAGCTGGGCAGC
1 ---AAAAATTATGCTAGCTGTGCAGC
*
16052052 AAAAAATTATGCTAGCTGTGCAGT
1 -AAAAATTATGCTAGCTGTGCAGC
*
16052076 AGAAAATTATGCTAGTTGTGCCA-C
1 A-AAAATTATGCTAGCTGTG-CAGC
* * * *
16052100 ATAAAATTATG-TGAACTATACAAC
1 A-AAAATTATGCT-AGCTGTGCAGC
* * *
16052124 ATATATTATGCTAGTTGTGCAGC
1 AAAAATTATGCTAGCTGTGCAGC
16052147 AAAAAATTATG
1 -AAAAATTATG
16052158 TGAACTATAC
Statistics
Matches: 161, Mismatches: 30, Indels: 24
0.75 0.14 0.11
Matches are distributed among these distances:
23 19 0.12
24 119 0.74
25 3 0.02
26 19 0.12
27 1 0.01
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (23 bp):
AAAAATTATGCTAGCTGTGCAGC
Found at i:16052096 original size:74 final size:72
Alignment explanation
Indices: 16051932--16052096 Score: 197
Period size: 74 Copynumber: 2.3 Consensus size: 72
16051922 CGATGAACGA
* * * *
16051932 AAAATTATGCTAGCTCTGCAGCGAAAAATTATGCTAGTTGTGCAGCAGAAAATTATGTGAACTGT
1 AAAATTATGCTAGCTGTGCAGCGAAAAATTATGCTAGCTGGGCAGCAAAAAATTATGTGAACTGT
16051997 GCAACAG
66 GCAACAG
* * * *
16052004 AAAATTTTGTTAGCTGTGCAGCAATAAAAATTATGCTAGCTGGGCAGCAAAAAATTATGCT-AGC
1 AAAATTATGCTAGCTGTGCAGC--GAAAAATTATGCTAGCTGGGCAGCAAAAAATTATG-TGAAC
**
16052068 TGTGCAGTAG
63 TGTGCAACAG
*
16052078 AAAATTATGCTAGTTGTGC
1 AAAATTATGCTAGCTGTGC
16052097 CACATAAAAT
Statistics
Matches: 77, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
72 19 0.25
74 57 0.74
75 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (72 bp):
AAAATTATGCTAGCTGTGCAGCGAAAAATTATGCTAGCTGGGCAGCAAAAAATTATGTGAACTGT
GCAACAG
Found at i:16052667 original size:59 final size:59
Alignment explanation
Indices: 16052604--16052801 Score: 254
Period size: 59 Copynumber: 3.4 Consensus size: 59
16052594 CGGCAAACTA
* * * *
16052604 TAAGATTTTAAAAATTTTGTAACTGGAGTAAATAGTTACGATCGTAAATCGGTGAACCG
1 TAAGATTTTGAAAATCTTGTAATTGGAGTAAATAGTTGCGATCGTAAATCGGTGAACCG
* * ** * * **
16052663 TAAGATTTTGAAAATATTGCAATTGGAGTAAATAGTTGCGATTTTCAATTGACGAACCG
1 TAAGATTTTGAAAATCTTGTAATTGGAGTAAATAGTTGCGATCGTAAATCGGTGAACCG
* * *
16052722 TAAGATTTTGAAAATCTTGTAATTGGAGTAAATGGTTGC-ATCGTAAATCGGTAAACCA
1 TAAGATTTTGAAAATCTTGTAATTGGAGTAAATAGTTGCGATCGTAAATCGGTGAACCG
16052780 TAAGATTTTGAAAATCTTGTAA
1 TAAGATTTTGAAAATCTTGTAA
16052802 ATGGGAGGTC
Statistics
Matches: 117, Mismatches: 22, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
58 33 0.28
59 84 0.72
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.34
Consensus pattern (59 bp):
TAAGATTTTGAAAATCTTGTAATTGGAGTAAATAGTTGCGATCGTAAATCGGTGAACCG
Found at i:16053415 original size:33 final size:33
Alignment explanation
Indices: 16053373--16053440 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
16053363 GTTTCTAAAA
*
16053373 GTTTCACAAGGAATCGCCCAGTGAAAAGTTCTT
1 GTTTCACAAGGAATCACCCAGTGAAAAGTTCTT
16053406 GTTTCACAAGGAATCACCCAGTGAAAAGTTCTT
1 GTTTCACAAGGAATCACCCAGTGAAAAGTTCTT
16053439 GT
1 GT
16053441 GCTATCTCCC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (33 bp):
GTTTCACAAGGAATCACCCAGTGAAAAGTTCTT
Found at i:16055057 original size:21 final size:22
Alignment explanation
Indices: 16055023--16055069 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
16055013 TTTTATAATG
* *
16055023 AAAATTAAATTAAATTAAAGTT
1 AAAATTAAAATAAATAAAAGTT
*
16055045 AAAA-TAAAATAAATAAAATTT
1 AAAATTAAAATAAATAAAAGTT
16055066 AAAA
1 AAAA
16055070 ACATAAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (22 bp):
AAAATTAAAATAAATAAAAGTT
Found at i:16055845 original size:16 final size:16
Alignment explanation
Indices: 16055824--16055878 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
16055814 AAATTTACTT
*
16055824 ATTATATAAGTAAATA
1 ATTATAAAAGTAAATA
*
16055840 ATTATAAAAAGTAAATT
1 ATTAT-AAAAGTAAATA
* *
16055857 A-TATAAAATTATATA
1 ATTATAAAAGTAAATA
16055872 ATTATAA
1 ATTATAA
16055879 TATATTAATT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
15 9 0.28
16 13 0.41
17 10 0.31
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (16 bp):
ATTATAAAAGTAAATA
Found at i:16069979 original size:15 final size:15
Alignment explanation
Indices: 16069924--16069980 Score: 60
Period size: 15 Copynumber: 3.5 Consensus size: 15
16069914 TTTATACTAC
16069924 AAAATATTTATTATT
1 AAAATATTTATTATT
* *
16069939 AACATATTTATAATTGT
1 AAAATATTTATTA-T-T
16069956 AATAAATATTTATTATT
1 -A-AAATATTTATTATT
16069973 AAAATATT
1 AAAATATT
16069981 AATTTTGAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
15 18 0.53
16 2 0.06
17 2 0.06
18 2 0.06
19 10 0.29
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (15 bp):
AAAATATTTATTATT
Found at i:16070066 original size:22 final size:22
Alignment explanation
Indices: 16070017--16070066 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
16070007 GAATAATATT
*
16070017 ATTTAAATTTATTAAAATAAAA
1 ATTTATATTTATTAAAATAAAA
* * * *
16070039 AATTATATTTATTATATTAATA
1 ATTTATATTTATTAAAATAAAA
16070061 ATTTAT
1 ATTTAT
16070067 TATATGACTA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
ATTTATATTTATTAAAATAAAA
Found at i:16072086 original size:6 final size:6
Alignment explanation
Indices: 16072075--16072121 Score: 94
Period size: 6 Copynumber: 7.8 Consensus size: 6
16072065 AAACAAATAT
16072075 ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATA
1 ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATA
16072122 TAAAAATGCC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (6 bp):
ATATAC
Found at i:16072979 original size:18 final size:19
Alignment explanation
Indices: 16072956--16072991 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
16072946 AAACTTTAGC
*
16072956 TTTTTC-TTTATTTACAAG
1 TTTTTCATTAATTTACAAG
16072974 TTTTTCATTAATTTACAA
1 TTTTTCATTAATTTACAA
16072992 TGAAAAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.28, C:0.11, G:0.03, T:0.58
Consensus pattern (19 bp):
TTTTTCATTAATTTACAAG
Found at i:16074657 original size:137 final size:136
Alignment explanation
Indices: 16074473--16074820 Score: 377
Period size: 137 Copynumber: 2.6 Consensus size: 136
16074463 ATTTGTAAGT
* * * **
16074473 TTTTTAAATTTTTAATT-ATTTTTTTAATATATTAATTACTTTGTTAGATGCTTATATAGTTGTA
1 TTTTT-AATTTTTAATTAATATTTTTAACATATTAATTACTTTGTTAGATGCTTAGATAGTTACA
* * * *
16074537 ATTACATCCTT-AAGTCTTGAGTTTAATTT-TTTTTTACTCATATTTTTATTTTTTATTTTATGT
65 ATTACATCCTTGAA-TCTTGAGTTTAATTTCTCTTTTACTAATATTTGTATTTTTTATTTCATGT
*
16074600 TGCTTAAA
129 TACTTAAA
* * *
16074608 CTTTTTCAATTTTTAATTAATATTTTTAACATATTAGTTACTTTTTTAGATGGTTAGATAGTTAC
1 -TTTTT-AATTTTTAATTAATATTTTTAACATATTAATTACTTTGTTAGATGCTTAGATAGTTAC
* *
16074673 AATTACATTCTTGAATCTTGAGTTTGATTTCTCTTTTACTAATATTTGTATTTTTTATTTCATGT
64 AATTACATCCTTGAATCTTGAGTTTAATTTCTCTTTTACTAATATTTGTATTTTTTATTTCATGT
*
16074738 TACTTTAA
129 TACTTAAA
* * * ** *
16074746 -GTTT--TTTTTAATTAATATTTTTAACATATT-ATCTCATTTTGATAGATTATTAGATAATTAC
1 TTTTTAATTTTTAATTAATATTTTTAACATATTAAT-T-ACTTTGTTAGATGCTTAGATAGTTAC
* *
16074807 GATTATATCCTTGA
64 AATTACATCCTTGA
16074821 GTTTGAGGTT
Statistics
Matches: 179, Mismatches: 28, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
132 1 0.01
133 27 0.15
134 31 0.17
136 19 0.11
137 63 0.35
138 38 0.21
ACGTcount: A:0.28, C:0.08, G:0.08, T:0.56
Consensus pattern (136 bp):
TTTTTAATTTTTAATTAATATTTTTAACATATTAATTACTTTGTTAGATGCTTAGATAGTTACAA
TTACATCCTTGAATCTTGAGTTTAATTTCTCTTTTACTAATATTTGTATTTTTTATTTCATGTTA
CTTAAA
Found at i:16074912 original size:13 final size:13
Alignment explanation
Indices: 16074896--16074920 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16074886 TTTTTAAAAT
16074896 TTTTAATTAATAC
1 TTTTAATTAATAC
16074909 TTTTAATTAATA
1 TTTTAATTAATA
16074921 AATATATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (13 bp):
TTTTAATTAATAC
Found at i:16074943 original size:44 final size:47
Alignment explanation
Indices: 16074886--16074987 Score: 111
Period size: 49 Copynumber: 2.2 Consensus size: 47
16074876 TTTCAAACTT
16074886 TTTTTAAA-ATTTTTA-ATTAAT-ACTTTTAATTAATAAATATATTA
1 TTTTTAAATATTTTTACATTAATCACTTTTAATTAATAAATATATTA
* * * * *
16074930 TTTTTAAGTTTTTTTACTATTAATCCATTTTTAATTAATAATTATTTTA
1 TTTTTAAATATTTTTAC-ATTAAT-CACTTTTAATTAATAAATATATTA
16074979 TTTATTAAA
1 TTT-TTAAA
16074988 ACAATATATT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
44 7 0.15
45 6 0.13
47 6 0.13
49 23 0.50
50 4 0.09
ACGTcount: A:0.37, C:0.04, G:0.01, T:0.58
Consensus pattern (47 bp):
TTTTTAAATATTTTTACATTAATCACTTTTAATTAATAAATATATTA
Found at i:16075250 original size:139 final size:138
Alignment explanation
Indices: 16074998--16075333 Score: 381
Period size: 139 Copynumber: 2.4 Consensus size: 138
16074988 ACAATATATT
* * * **
16074998 TATTAATTAAAAATAAAAAAGTTTGAAATAATATGAAATAAAAAATGCATTAATATACTTATAAA
1 TATTAATTAAAAATAAAAAAGCTTGAAGTAACATGAAATAAAAAATGCA--AATATAAGTATAAA
* * * * * *
16075063 AATAATGAAACTTCAGATTCAAAAATATAATTACAATTATCTAACCATCTAACAAAAAG-AGCTA
64 AAGAATCAAACTTCAGACTAAAAAATATAATTACAACTATCTAACCATCTAAC--AAAGTAACTA
16075127 ATATATTAAAAA
127 ATATATTAAAAA
* * *
16075139 TATTAATTAAAAATAAAAAAGCTGGAAGTAACATGGAATAAAAAATGCAAATATAAGTA-AGAGA
1 TATTAATTAAAAATAAAAAAGCTTGAAGTAACATGAAATAAAAAATGCAAATATAAGTATA-AAA
* *
16075203 AGAATCAAAC-TCAAGACTAAAAAATATAATTACAACTATCTAACCATCTAACGAAGTAACTCAT
65 AGAATCAAACTTC-AGACTAAAAAATATAATTACAACTATCTAACCATCTAACAAAGTAACTAAT
16075267 ATATTAAAAA
129 ATATTAAAAA
* * * * * **
16075277 AATTAATTAAAATTTTAAAAAGCTTAAAGGAACATGAAATAAAAAATATAAATATAA
1 TATTAATTAAAA-ATAAAAAAGCTTGAAGTAACATGAAATAAAAAATGCAAATATAA
16075334 ATAGAAAGGG
Statistics
Matches: 166, Mismatches: 25, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
137 3 0.02
138 29 0.17
139 90 0.54
141 44 0.27
ACGTcount: A:0.57, C:0.09, G:0.08, T:0.27
Consensus pattern (138 bp):
TATTAATTAAAAATAAAAAAGCTTGAAGTAACATGAAATAAAAAATGCAAATATAAGTATAAAAA
GAATCAAACTTCAGACTAAAAAATATAATTACAACTATCTAACCATCTAACAAAGTAACTAATAT
ATTAAAAA
Found at i:16075812 original size:14 final size:15
Alignment explanation
Indices: 16075785--16075813 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
16075775 ATATTTTAAA
16075785 ATTTAAGATGTAGTG
1 ATTTAAGATGTAGTG
16075800 ATTTAAG-TGTAGTG
1 ATTTAAGATGTAGTG
16075814 TTTGTATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.00, G:0.28, T:0.41
Consensus pattern (15 bp):
ATTTAAGATGTAGTG
Found at i:16077638 original size:43 final size:43
Alignment explanation
Indices: 16077583--16077898 Score: 189
Period size: 42 Copynumber: 7.4 Consensus size: 43
16077573 AAAATGCTAT
* *
16077583 TATAAAACATGACCTTTAGCGGTGCTTTTCCCAAAAACGCCAC
1 TATAGAACATGACCTTTAGCGGCGCTTTTCCCAAAAACGCCAC
* * * * * *
16077626 TATAGAATATGACTTTTAGCGGCGCTTTTCCCCTATAACACCGC
1 TATAGAACATGACCTTTAGCGGCGCTTTT-CCCAAAAACGCCAC
* * * * ** * * *
16077670 CATAGAACCTAACTTTTAGCGGCGCTTTT-TTACAAACACCGC
1 TATAGAACATGACCTTTAGCGGCGCTTTTCCCAAAAACGCCAC
* * * * *
16077712 TATAGAACATGACCTTTAGTGGTGTTTTTTCCACAAAA-GCCGC
1 TATAGAACATGACCTTTAGCGGCGCTTTTCCCA-AAAACGCCAC
* * *
16077755 TATAGAATCA-GACCTTTAGCGGCGC-TCTCCCACAAATG-CAGC
1 TATAGAA-CATGACCTTTAGCGGCGCTTTTCCCAAAAACGCCA-C
* * ** *
16077797 TATAAAACATGACTTTTAGCGTTGCTTTTCCCAAAAATGCCAC
1 TATAGAACATGACCTTTAGCGGCGCTTTTCCCAAAAACGCCAC
* * * * * * *
16077840 TATTA-AACA-AACCTTTAACGACGC-TTTCTCACAAACGTCGC
1 TA-TAGAACATGACCTTTAGCGGCGCTTTTCCCAAAAACGCCAC
*
16077881 TAAAGAACATGACCTTTA
1 TATAGAACATGACCTTTA
16077899 AAAAAATATT
Statistics
Matches: 208, Mismatches: 53, Indels: 25
0.73 0.19 0.09
Matches are distributed among these distances:
40 1 0.00
41 24 0.12
42 72 0.35
43 67 0.32
44 44 0.21
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (43 bp):
TATAGAACATGACCTTTAGCGGCGCTTTTCCCAAAAACGCCAC
Found at i:16082162 original size:15 final size:15
Alignment explanation
Indices: 16082136--16082171 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
16082126 AATTATAAAT
16082136 CATAAA-CCATAATC
1 CATAAACCCATAATC
*
16082150 CCTAAACCCATAATC
1 CATAAACCCATAATC
16082165 CATAAAC
1 CATAAAC
16082172 TTTAAAATAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.19
Consensus pattern (15 bp):
CATAAACCCATAATC
Found at i:16082371 original size:40 final size:41
Alignment explanation
Indices: 16082316--16082422 Score: 155
Period size: 40 Copynumber: 2.7 Consensus size: 41
16082306 AATTTTTTGC
* * *
16082316 GGCGTTTTTCAAAAAGCGCCGCTAGTGGTCGACCTATAG-A
1 GGCGTTTTTTAAAAAGCGCCGCTAATGATCGACCTATAGCA
*
16082356 GGCGTTTTTTAAAAAGCGCCGCTAATGATCGATCTATAGCA
1 GGCGTTTTTTAAAAAGCGCCGCTAATGATCGACCTATAGCA
*
16082397 -ACGTTTTTTAAAAAGCGCCGCTAATG
1 GGCGTTTTTTAAAAAGCGCCGCTAATG
16082423 CCACTAAACT
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
40 60 0.98
41 1 0.02
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (41 bp):
GGCGTTTTTTAAAAAGCGCCGCTAATGATCGACCTATAGCA
Found at i:16082548 original size:39 final size:39
Alignment explanation
Indices: 16082476--16082628 Score: 175
Period size: 39 Copynumber: 3.9 Consensus size: 39
16082466 TTTCAGCGTT
* * *
16082476 TTTTTCAAAAAGCGCCGCTAATGGTCGACCTATAACAGTG
1 TTTTTCAAAAAGCGCCGCTAATGCTCGATCTAT-AGAGTG
*
16082516 TTTTTTAAAAAGCGCC-CTAATGCTCGATCTATAGAG-G
1 TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGAGTG
* * * ** *
16082553 CATTTTTCAAAAAGCGCCACTGATGTTTAATCTATAGTGTG
1 --TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGAGTG
16082594 TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAG
1 TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAG
16082629 CGACGTTTTT
Statistics
Matches: 94, Mismatches: 15, Indels: 9
0.80 0.13 0.08
Matches are distributed among these distances:
37 1 0.01
38 3 0.03
39 59 0.63
40 30 0.32
41 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32
Consensus pattern (39 bp):
TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGAGTG
Found at i:16082559 original size:154 final size:155
Alignment explanation
Indices: 16082248--16082573 Score: 430
Period size: 154 Copynumber: 2.1 Consensus size: 155
16082238 ATGATAATTA
* * * * *
16082248 TTTCAAAAAGCGTCACTAATTCCACTAAAGCCCAACATAAAATGACGGCGTTGTGCTTAATTTTT
1 TTTCAAAAAGCGCCACTAATGCCACTAAAGCCCAACATAAAACGACGACGTTCTGCTTAATTTTT
* * *
16082313 TGCGGCGTTTTTCAAAAAGCGCCGCTAGTGGTCGACCTATAGAGGCGTTTTTTAAAAAGCGCCGC
66 TGCAGCGTTTTTCAAAAAGCGCCGCTAATGGTCGACCTATAGAAGCGTTTTTTAAAAAGCGCCGC
16082378 TAATGATCGATCTATAGCAACG-TT
131 TAATGATCGATCTATAGCAACGATT
* * *
16082402 TTTTAAAAAGCGCCGCTAATGCCACTAAA-CTTCAACATAAAACGACGACGTTCTGCTTAATTTT
1 TTTCAAAAAGCGCCACTAATGCCACTAAAGC-CCAACATAAAACGACGACGTTCTGCTTAATTTT
* *
16082466 TTTCAGCGTTTTTTTCAAAAAGCGCCGCTAATGGTCGACCTATA-ACAGTGTTTTTTAAAAAGCG
65 TTGCAGCG--TTTTTCAAAAAGCGCCGCTAATGGTCGACCTATAGA-AGCGTTTTTTAAAAAGCG
* *
16082530 CC-CTAATGCTCGATCTATAG--AGGCATT
127 CCGCTAATGATCGATCTATAGCAACG-ATT
16082557 TTTCAAAAAGCGCCACT
1 TTTCAAAAAGCGCCACT
16082574 GATGTTTAAT
Statistics
Matches: 149, Mismatches: 17, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
153 3 0.02
154 60 0.40
155 35 0.23
156 51 0.34
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (155 bp):
TTTCAAAAAGCGCCACTAATGCCACTAAAGCCCAACATAAAACGACGACGTTCTGCTTAATTTTT
TGCAGCGTTTTTCAAAAAGCGCCGCTAATGGTCGACCTATAGAAGCGTTTTTTAAAAAGCGCCGC
TAATGATCGATCTATAGCAACGATT
Found at i:16085917 original size:27 final size:27
Alignment explanation
Indices: 16085887--16086027 Score: 191
Period size: 27 Copynumber: 5.2 Consensus size: 27
16085877 ATGACGAAGT
16085887 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
16085914 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
16085941 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
*
16085968 CACCAG-GACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
16085995 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
16086022 CACCAG
1 CACCAG
16086028 GACGCTTCCT
Statistics
Matches: 102, Mismatches: 5, Indels: 14
0.84 0.04 0.12
Matches are distributed among these distances:
26 10 0.10
27 88 0.86
28 4 0.04
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:16086028 original size:54 final size:54
Alignment explanation
Indices: 16085887--16086030 Score: 254
Period size: 54 Copynumber: 2.7 Consensus size: 54
16085877 ATGACGAAGT
* *
16085887 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
16085941 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
16085995 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
16086031 GCTTCCTCCA
Statistics
Matches: 87, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
53 5 0.06
54 82 0.94
ACGTcount: A:0.34, C:0.24, G:0.25, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:16087658 original size:26 final size:26
Alignment explanation
Indices: 16087627--16087734 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
16087617 TGAAATGCCC
*
16087627 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
16087653 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
16087679 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
16087705 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
16087731 ATCA
1 ATCA
16087735 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:16093996 original size:27 final size:27
Alignment explanation
Indices: 16093966--16094106 Score: 191
Period size: 27 Copynumber: 5.2 Consensus size: 27
16093956 ATGACGAAGT
16093966 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
16093993 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
16094020 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
*
16094047 CACCAG-GACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
16094074 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
16094101 CACCAG
1 CACCAG
16094107 GACGCTTCCT
Statistics
Matches: 102, Mismatches: 5, Indels: 14
0.84 0.04 0.12
Matches are distributed among these distances:
26 10 0.10
27 88 0.86
28 4 0.04
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:16094107 original size:54 final size:54
Alignment explanation
Indices: 16093966--16094109 Score: 254
Period size: 54 Copynumber: 2.7 Consensus size: 54
16093956 ATGACGAAGT
* *
16093966 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
16094020 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
16094074 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
16094110 GCTTCCTCCA
Statistics
Matches: 87, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
53 5 0.06
54 82 0.94
ACGTcount: A:0.34, C:0.24, G:0.25, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:16095740 original size:26 final size:26
Alignment explanation
Indices: 16095709--16095816 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
16095699 TGAAATGCCC
*
16095709 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
16095735 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
16095761 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
16095787 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
16095813 ATCA
1 ATCA
16095817 ATTTGTAACA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:16098135 original size:37 final size:37
Alignment explanation
Indices: 16098071--16098146 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
16098061 TTACAAGCCA
16098071 AAATCATTATAAGCCACATCTCATGGCTACAT-ACAAC
1 AAATCATTATAAGCCACATCTCATGGCTA-ATCACAAC
*
16098108 AAATCATTATAAGCCA-ATACAT-TTGGCTAATCACAAC
1 AAATCATTATAAGCCACAT-C-TCATGGCTAATCACAAC
16098145 AA
1 AA
16098147 CATCGATCAT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
36 4 0.11
37 30 0.86
38 1 0.03
ACGTcount: A:0.43, C:0.24, G:0.08, T:0.25
Consensus pattern (37 bp):
AAATCATTATAAGCCACATCTCATGGCTAATCACAAC
Found at i:16102746 original size:21 final size:21
Alignment explanation
Indices: 16102717--16102758 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
16102707 TAAGTTAGTA
16102717 TTAAAGTTTCGTTAGAAAATT
1 TTAAAGTTTCGTTAGAAAATT
* * *
16102738 TTAATGTTTGGTTAGTAAATT
1 TTAAAGTTTCGTTAGAAAATT
16102759 AATTAAAAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (21 bp):
TTAAAGTTTCGTTAGAAAATT
Found at i:16105641 original size:25 final size:23
Alignment explanation
Indices: 16105607--16105831 Score: 183
Period size: 25 Copynumber: 9.4 Consensus size: 23
16105597 GACCTCAGCA
16105607 TGCTCTCTGATTATTAGCACGCTAG
1 TGCTCTCTGA-TATTAGCACG-TAG
*
16105632 TGCTCTCTGAATATTAGCACGCCAG
1 TGCTCTCTG-ATATTAGCACG-TAG
*
16105657 TGCTCTCTGATTATTAGCACGCCAG
1 TGCTCTCTGA-TATTAGCACG-TAG
* *
16105682 TGCTCTCTG--ATTAGCACATTTG
1 TGCTCTCTGATATTAGCAC-GTAG
16105704 TGCTCTCTGATATTTAGCACGTCAG
1 TGCTCTCTGATA-TTAGCACGT-AG
* *
16105729 TGCTCTCTGACATTTAGCATGTCAG
1 TGCTCTCTGATA-TTAGCACGT-AG
16105754 TGCTCTCTGATATTTAGCACGTCAG
1 TGCTCTCTGATA-TTAGCACGT-AG
* * *
16105779 TGCTCTTTG--ATTAGCACATTTG
1 TGCTCTCTGATATTAGCAC-GTAG
*
16105801 TGCTCTCTG-TA-TAGCACTTCAG
1 TGCTCTCTGATATTAGCACGT-AG
16105823 TGCTCTCTG
1 TGCTCTCTG
16105832 TTCATTAGTG
Statistics
Matches: 175, Mismatches: 15, Indels: 23
0.82 0.07 0.11
Matches are distributed among these distances:
21 2 0.01
22 50 0.29
23 3 0.02
24 3 0.02
25 116 0.66
26 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36
Consensus pattern (23 bp):
TGCTCTCTGATATTAGCACGTAG
Found at i:16105666 original size:50 final size:50
Alignment explanation
Indices: 16105607--16105831 Score: 224
Period size: 50 Copynumber: 4.7 Consensus size: 50
16105597 GACCTCAGCA
*
16105607 TGCTCTCTGAT-TATTAGCACG-CTAGTGCTCTCTGAATATTAGCACGCCAG
1 TGCTCTCTGATAT-TTAGCACGTC-AGTGCTCTCTGAATATTAGCACGTCAG
* * **
16105657 TGCTCTCTGAT-TATTAGCACGCCAGTGCTCTCTG---ATTAGCACATTTG
1 TGCTCTCTGATAT-TTAGCACGTCAGTGCTCTCTGAATATTAGCACGTCAG
*
16105704 TGCTCTCTGATATTTAGCACGTCAGTGCTCTCTGACAT-TTAGCATGTCAG
1 TGCTCTCTGATATTTAGCACGTCAGTGCTCTCTGA-ATATTAGCACGTCAG
* * **
16105754 TGCTCTCTGATATTTAGCACGTCAGTGCTCTTTG---ATTAGCACATTTG
1 TGCTCTCTGATATTTAGCACGTCAGTGCTCTCTGAATATTAGCACGTCAG
*
16105801 TGCTCTCTG-TA--TAGCACTTCAGTGCTCTCTG
1 TGCTCTCTGATATTTAGCACGTCAGTGCTCTCTG
16105832 TTCATTAGTG
Statistics
Matches: 152, Mismatches: 16, Indels: 20
0.81 0.09 0.11
Matches are distributed among these distances:
44 18 0.12
46 2 0.01
47 57 0.38
48 1 0.01
50 73 0.48
51 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36
Consensus pattern (50 bp):
TGCTCTCTGATATTTAGCACGTCAGTGCTCTCTGAATATTAGCACGTCAG
Found at i:16105707 original size:72 final size:72
Alignment explanation
Indices: 16105631--16105764 Score: 200
Period size: 72 Copynumber: 1.9 Consensus size: 72
16105621 TAGCACGCTA
*
16105631 GTGCTCTCTGA-ATATTAGCACGCCAGTGCTCTCTGA-TTATTAGCACGCCAGTGCTCTCTGATT
1 GTGCTCTCTGATAT-TTAGCACGCCAGTGCTCTCTGACAT-TTAGCACGCCAGTGCTCTCTGATT
16105694 AGCACATTT
64 AGCACATTT
* * *
16105703 GTGCTCTCTGATATTTAGCACGTCAGTGCTCTCTGACATTTAGCATGTCAGTGCTCTCTGAT
1 GTGCTCTCTGATATTTAGCACGCCAGTGCTCTCTGACATTTAGCACGCCAGTGCTCTCTGAT
16105765 ATTTAGCACG
Statistics
Matches: 56, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
72 53 0.95
73 3 0.05
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.35
Consensus pattern (72 bp):
GTGCTCTCTGATATTTAGCACGCCAGTGCTCTCTGACATTTAGCACGCCAGTGCTCTCTGATTAG
CACATTT
Found at i:16105773 original size:97 final size:97
Alignment explanation
Indices: 16105607--16105831 Score: 320
Period size: 97 Copynumber: 2.4 Consensus size: 97
16105597 GACCTCAGCA
16105607 TGCTCTCTGAT-TATTAGCACG-CTAGTGCTCTCTGAATATTAGCACGCCAGTGCTCTCTGATTA
1 TGCTCTCTGATAT-TTAGCACGTC-AGTGCTCTCTGAATATTAGCACGCCAGTGCTCTCTGATTA
16105670 TTAGCACGCCAGTGCTCTCTGATTAGCACATTTG
64 TTAGCACGCCAGTGCTCTCTGATTAGCACATTTG
* *
16105704 TGCTCTCTGATATTTAGCACGTCAGTGCTCTCTGACAT-TTAGCATGTCAGTGCTCTCTGA-TAT
1 TGCTCTCTGATATTTAGCACGTCAGTGCTCTCTGA-ATATTAGCACGCCAGTGCTCTCTGATTA-
* *
16105767 TTAGCACGTCAGTGCTCTTTGATTAGCACATTTG
64 TTAGCACGCCAGTGCTCTCTGATTAGCACATTTG
*
16105801 TGCTCTCTG-TA--TAGCACTTCAGTGCTCTCTG
1 TGCTCTCTGATATTTAGCACGTCAGTGCTCTCTG
16105832 TTCATTAGTG
Statistics
Matches: 119, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
94 19 0.16
96 4 0.03
97 92 0.77
98 4 0.03
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36
Consensus pattern (97 bp):
TGCTCTCTGATATTTAGCACGTCAGTGCTCTCTGAATATTAGCACGCCAGTGCTCTCTGATTATT
AGCACGCCAGTGCTCTCTGATTAGCACATTTG
Found at i:16106843 original size:46 final size:48
Alignment explanation
Indices: 16106791--16106894 Score: 122
Period size: 46 Copynumber: 2.2 Consensus size: 48
16106781 TATTCAATAT
* * * *
16106791 AGACCATATCTGGGATATGGCATCA-GTGTGATATGTGA-TCTGTGTA
1 AGACCATAGCTGGGATATGGCATCAGGTGTGATATATGACTATGTGCA
* * *
16106837 AGACCATGGCTGGGCTATGGCTTCAGTGTGTGATATATGACTATGTGCA
1 AGACCATAGCTGGGATATGGCATCAG-GTGTGATATATGACTATGTGCA
16106886 AGACCATAG
1 AGACCATAG
16106895 TTTTACTATA
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
46 21 0.45
48 12 0.26
49 14 0.30
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (48 bp):
AGACCATAGCTGGGATATGGCATCAGGTGTGATATATGACTATGTGCA
Found at i:16111412 original size:15 final size:15
Alignment explanation
Indices: 16111365--16111414 Score: 57
Period size: 15 Copynumber: 3.2 Consensus size: 15
16111355 CAATTCAAAT
*
16111365 AATCAATATATATTC
1 AATCAATATAAATTC
16111380 AAT-ATATATACCAATTC
1 AATCA-ATATA--AATTC
16111397 AATCAATATAAATTC
1 AATCAATATAAATTC
16111412 AAT
1 AAT
16111415 AAATTCATCA
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
14 1 0.03
15 16 0.53
17 12 0.40
18 1 0.03
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (15 bp):
AATCAATATAAATTC
Found at i:16112218 original size:12 final size:12
Alignment explanation
Indices: 16112201--16112227 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
16112191 AAAGTTAAAA
16112201 AATATATATTAT
1 AATATATATTAT
16112213 AATATATATTAT
1 AATATATATTAT
16112225 AAT
1 AAT
16112228 TTATGTCGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
AATATATATTAT
Found at i:16117468 original size:21 final size:19
Alignment explanation
Indices: 16117444--16117482 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
16117434 TTAACAAATT
16117444 CAAAACATGATCAAACACATC
1 CAAAACAT-ATCAAA-ACATC
*
16117465 CAAATCATATCAAAACAT
1 CAAAACATATCAAAACAT
16117483 ACATCCTAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 6 0.35
21 7 0.41
ACGTcount: A:0.54, C:0.26, G:0.03, T:0.18
Consensus pattern (19 bp):
CAAAACATATCAAAACATC
Found at i:16118368 original size:40 final size:39
Alignment explanation
Indices: 16118313--16118447 Score: 148
Period size: 40 Copynumber: 3.4 Consensus size: 39
16118303 ACCAGTTTGG
*
16118313 CACCCAGTGGCTCATCGGATAATTCGAAGTAATAAATTGA
1 CACCCAGTGTCTCATCGGATAATTCGAAGT-ATAAATTGA
* * *
16118353 CACCCAGTGTCTCATCGGCTAAATCGAAG--TAAATTGG
1 CACCCAGTGTCTCATCGGATAATTCGAAGTATAAATTGA
* * ** *
16118390 CACCCAGTGCCTTATCAAATTAATTCAAAGTAGTAAATTGA
1 CACCCAGTGTCTCATCGGA-TAATTCGAAGTA-TAAATTGA
16118431 CACCCAGTGTCTCATCG
1 CACCCAGTGTCTCATCG
16118448 ACTCGAAGTC
Statistics
Matches: 76, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
37 21 0.28
38 8 0.11
40 26 0.34
41 21 0.28
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.26
Consensus pattern (39 bp):
CACCCAGTGTCTCATCGGATAATTCGAAGTATAAATTGA
Found at i:16118602 original size:11 final size:12
Alignment explanation
Indices: 16118582--16118627 Score: 51
Period size: 11 Copynumber: 3.8 Consensus size: 12
16118572 TTCAATTCAA
16118582 ATAA-TCAATAT
1 ATAATTCAATAT
16118593 AT-ATTCAATAT
1 ATAATTCAATAT
16118604 ATAATTCAATCAAT
1 ATAATTCAAT--AT
16118618 ATAAATTCAA
1 AT-AATTCAA
16118628 CAAATTCATC
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
10 1 0.03
11 11 0.37
12 7 0.23
14 4 0.13
15 7 0.23
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37
Consensus pattern (12 bp):
ATAATTCAATAT
Found at i:16118618 original size:16 final size:15
Alignment explanation
Indices: 16118584--16118627 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
16118574 CAATTCAAAT
*
16118584 AATCAATATATATTC
1 AATCAATATAAATTC
16118599 AAT--ATAT-AATTC
1 AATCAATATAAATTC
16118611 AATCAATATAAATTC
1 AATCAATATAAATTC
16118626 AA
1 AA
16118628 CAAATTCATC
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
12 7 0.28
13 4 0.16
14 4 0.16
15 10 0.40
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.36
Consensus pattern (15 bp):
AATCAATATAAATTC
Found at i:16119420 original size:7 final size:7
Alignment explanation
Indices: 16119404--16119473 Score: 54
Period size: 7 Copynumber: 9.3 Consensus size: 7
16119394 TTATATTTAC
16119404 TAAT-TA
1 TAATATA
16119410 TAATATA
1 TAATATA
16119417 TAATATAA
1 TAATAT-A
16119425 TATATATA
1 TA-ATATA
16119433 CTTAATA-A
1 --TAATATA
*
16119441 TTAAAATA
1 -TAATATA
16119449 TAATATTA
1 TAATA-TA
16119457 TAATATTA
1 TAATA-TA
16119465 TAATATA
1 TAATATA
16119472 TA
1 TA
16119474 TTTTTTAACT
Statistics
Matches: 55, Mismatches: 2, Indels: 13
0.79 0.03 0.19
Matches are distributed among these distances:
6 4 0.07
7 21 0.38
8 21 0.38
9 7 0.13
10 2 0.04
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.44
Consensus pattern (7 bp):
TAATATA
Found at i:16119443 original size:34 final size:34
Alignment explanation
Indices: 16119392--16119466 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 34
16119382 TTTATTTATT
* * *
16119392 TATTATATTTACTAATTATAATAT-ATAATATAA
1 TATTATACTTAATAATTAAAATATAATAATATAA
*
16119425 TATATATACTTAATAATTAAAATATAATATTATAA
1 TAT-TATACTTAATAATTAAAATATAATAATATAA
16119460 TATTATA
1 TATTATA
16119467 ATATATATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
33 3 0.08
34 22 0.61
35 11 0.31
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.47
Consensus pattern (34 bp):
TATTATACTTAATAATTAAAATATAATAATATAA
Found at i:16119460 original size:8 final size:8
Alignment explanation
Indices: 16119406--16119470 Score: 50
Period size: 8 Copynumber: 8.2 Consensus size: 8
16119396 ATATTTACTA
16119406 ATTATAAT
1 ATTATAAT
16119414 A-TATAAT
1 ATTATAAT
*
16119421 ATAAT-AT
1 ATTATAAT
16119428 ATATACTTAAT
1 AT-TA--TAAT
16119439 AATTA-AA-
1 -ATTATAAT
16119446 A-TATAAT
1 ATTATAAT
16119453 ATTATAAT
1 ATTATAAT
16119461 ATTATAAT
1 ATTATAAT
16119469 AT
1 AT
16119471 ATATTTTTTA
Statistics
Matches: 46, Mismatches: 2, Indels: 18
0.70 0.03 0.27
Matches are distributed among these distances:
5 2 0.04
6 3 0.07
7 12 0.26
8 22 0.48
10 1 0.02
11 4 0.09
12 2 0.04
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.45
Consensus pattern (8 bp):
ATTATAAT
Found at i:16119467 original size:27 final size:26
Alignment explanation
Indices: 16119406--16119471 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 26
16119396 ATATTTACTA
*
16119406 ATTATAATATATAATATAATATATAT
1 ATTATAATATAAAATATAATATATAT
16119432 ACTTAATAAT-TAAAATATAATATTATAAT
1 A-TT-ATAATATAAAATATAATA-TAT-AT
16119461 ATTATAATATA
1 ATTATAATATA
16119472 TATTTTTTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
26 1 0.03
27 18 0.53
28 12 0.35
29 3 0.09
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (26 bp):
ATTATAATATAAAATATAATATATAT
Found at i:16123484 original size:21 final size:21
Alignment explanation
Indices: 16123460--16123500 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
16123450 TAAAATAATT
16123460 TAAAT-TTTTATTATATAAAAA
1 TAAATATTTT-TTATATAAAAA
*
16123481 TAAATATTTTTTATTTAAAA
1 TAAATATTTTTTATATAAAA
16123501 TAGTGAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
TAAATATTTTTTATATAAAAA
Found at i:16130972 original size:20 final size:20
Alignment explanation
Indices: 16130944--16131026 Score: 67
Period size: 20 Copynumber: 3.9 Consensus size: 20
16130934 CTAGGAACTA
*
16130944 TGTGATCTGAGCTCATGAGT
1 TGTGGTCTGAGCTCATGAGT
* *
16130964 TGTGGTCTGAGTTCATGATAT
1 TGTGGTCTGAGCTCATGA-GT
*
16130985 ATGTGGCATCTGAACTCATTGAGT
1 -TGTGG--TCTGAGCTCA-TGAGT
* *
16131009 TATGGTCTGAGTTCATGA
1 TGTGGTCTGAGCTCATGA
16131027 TGTATGTGAC
Statistics
Matches: 49, Mismatches: 9, Indels: 10
0.72 0.13 0.15
Matches are distributed among these distances:
20 19 0.39
21 9 0.18
22 5 0.10
23 4 0.08
24 9 0.18
25 3 0.06
ACGTcount: A:0.22, C:0.13, G:0.28, T:0.37
Consensus pattern (20 bp):
TGTGGTCTGAGCTCATGAGT
Found at i:16131015 original size:45 final size:44
Alignment explanation
Indices: 16130948--16131034 Score: 138
Period size: 45 Copynumber: 2.0 Consensus size: 44
16130938 GAACTATGTG
* *
16130948 ATCTGAGCTCATGAGTTGTGGTCTGAGTTCATGATATATGTGGC
1 ATCTGAACTCATGAGTTATGGTCTGAGTTCATGATATATGTGGC
*
16130992 ATCTGAACTCATTGAGTTATGGTCTGAGTTCATGATGTATGTG
1 ATCTGAACTCA-TGAGTTATGGTCTGAGTTCATGATATATGTG
16131035 ACACATGTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 10 0.26
45 29 0.74
ACGTcount: A:0.22, C:0.13, G:0.28, T:0.38
Consensus pattern (44 bp):
ATCTGAACTCATGAGTTATGGTCTGAGTTCATGATATATGTGGC
Found at i:16139405 original size:37 final size:37
Alignment explanation
Indices: 16139356--16139427 Score: 85
Period size: 37 Copynumber: 1.9 Consensus size: 37
16139346 CATGGTAATT
**
16139356 ATTAGTATTGAATTGTATGAAAT-TAAATTGAATTGTA
1 ATTAGTATTGAATAAT-TGAAATGTAAATTGAATTGTA
*
16139393 ATTA-TATGTGAATAATTGAAATGTATATTGAATTG
1 ATTAGTAT-TGAATAATTGAAATGTAAATTGAATTG
16139428 AGAAAGTGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
36 9 0.30
37 21 0.70
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.43
Consensus pattern (37 bp):
ATTAGTATTGAATAATTGAAATGTAAATTGAATTGTA
Done.