Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 57 of 362
Found at i:17195263 original size:60 final size:59
Alignment explanation
Indices: 17195187--17195323 Score: 170
Period size: 60 Copynumber: 2.3 Consensus size: 59
17195177 AACTATGTTA
* *
17195187 ATATGGGCAAGGCCCAATATA-TCTCGACT-TGTAATAGGGCTACGGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAATATACTCT-GA-TATGTAA-AGGGCTACGGCCCAGATTAATACTG
* * *
17195247 ATATGGGCTAGGCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTGATA-TGTAAAGGGCTACGGCCCAGATTAATACTG
17195307 ATATGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
17195324 GTTAACACTG
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
59 1 0.01
60 52 0.76
61 15 0.22
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (59 bp):
ATATGGGCTAGGCCCAATATACTCTGATATGTAAAGGGCTACGGCCCAGATTAATACTG
Found at i:17195996 original size:16 final size:17
Alignment explanation
Indices: 17195964--17195996 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
17195954 CATCAAGAAG
17195964 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
17195982 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
17195997 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:17197303 original size:26 final size:28
Alignment explanation
Indices: 17197274--17197329 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
17197264 TTTACTCAAG
*
17197274 TTGTTTGAAG-TTTTTTT-ATTTTAATT
1 TTGTTTCAAGTTTTTTTTAATTTTAATT
17197300 TTGTTTCAAGTTTTTTTTAATTTTAATT
1 TTGTTTCAAGTTTTTTTTAATTTTAATT
17197328 TT
1 TT
17197330 TACTTTTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 9 0.33
27 7 0.26
28 11 0.41
ACGTcount: A:0.20, C:0.02, G:0.09, T:0.70
Consensus pattern (28 bp):
TTGTTTCAAGTTTTTTTTAATTTTAATT
Found at i:17197370 original size:23 final size:21
Alignment explanation
Indices: 17197344--17197406 Score: 56
Period size: 23 Copynumber: 2.8 Consensus size: 21
17197334 TTTTAATTAA
17197344 TTTAATTCATGTTGTTTAAATTT
1 TTTAATTCATG-T-TTTAAATTT
*
17197367 TTTAATAAACATGTTTTAAATTT
1 TTTAAT--TCATGTTTTAAATTT
*
17197390 TTCTAATTTAT-TTTTAA
1 TT-TAATTCATGTTTTAA
17197407 TTCATAATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
21 6 0.18
22 2 0.06
23 17 0.50
24 5 0.15
25 4 0.12
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.59
Consensus pattern (21 bp):
TTTAATTCATGTTTTAAATTT
Found at i:17202980 original size:13 final size:13
Alignment explanation
Indices: 17202948--17202973 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
17202938 TATGTTATAC
17202948 ATATCAACACATA
1 ATATCAACACATA
17202961 ATATCAACACATA
1 ATATCAACACATA
17202974 TGTTCAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.23, G:0.00, T:0.23
Consensus pattern (13 bp):
ATATCAACACATA
Found at i:17203978 original size:26 final size:27
Alignment explanation
Indices: 17203942--17203995 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
17203932 GAAGCTCTGG
17203942 AGAGCCATTAATAAGGAAGCTCA-GAA
1 AGAGCCATTAATAAGGAAGCTCACGAA
* **
17203968 AGAGCCTTTAATTGGGAAGCTCACGAA
1 AGAGCCATTAATAAGGAAGCTCACGAA
17203995 A
1 A
17203996 AGTTATATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.41, C:0.17, G:0.24, T:0.19
Consensus pattern (27 bp):
AGAGCCATTAATAAGGAAGCTCACGAA
Found at i:17211705 original size:5 final size:5
Alignment explanation
Indices: 17211695--17211719 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
17211685 ATATCTTGTA
17211695 TGATT TGATT TGATT TGATT TGATT
1 TGATT TGATT TGATT TGATT TGATT
17211720 ATGTAATCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.60
Consensus pattern (5 bp):
TGATT
Found at i:17216270 original size:15 final size:15
Alignment explanation
Indices: 17216250--17216283 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
17216240 TAATTATTTT
*
17216250 AATATAAAATAAATA
1 AATATAAAATAAACA
*
17216265 AATATAAACTAAACA
1 AATATAAAATAAACA
17216280 AATA
1 AATA
17216284 GTGACCTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.24
Consensus pattern (15 bp):
AATATAAAATAAACA
Found at i:17227902 original size:2 final size:2
Alignment explanation
Indices: 17227887--17228187 Score: 222
Period size: 2 Copynumber: 147.0 Consensus size: 2
17227877 CAAATGCAAG
* *
17227887 AT AT AT GAT CT AT AT AT AT AG AT AT GAT AT AT AT CAT AT AT CAT
1 AT AT AT -AT AT AT AT AT AT AT AT AT -AT AT AT AT -AT AT AT -AT
* * * * *
17227931 AT CT AT AT AT CT AT AT AT -T AT CT AT AT -T AT CT AT CT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
17227971 AT AT AT AG ACT AT AT CT AT AT AT AT AT GAT AT AT AT GAT AT AG
1 AT AT AT AT A-T AT AT AT AT AT AT AT AT -AT AT AT AT -AT AT AT
*
17228014 AT A- AT AT AT AT -T AT CT AT AT AT AT AT CAT AT AT AT CAT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT -AT AT AT
* * *
17228056 AT AT AT CAT AT AT -T AT CT AT AT AT AT AT AT -T AT CT AT AT AC
1 AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
17228097 AT AT GAT AT AT AT AT AG AT A- AT AT AG AT A- AT AT AT AG AT AT
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * *
17228138 AT AG AT AT GAT AT AT GAT AT AT GT CAT AT CT AT AT AT AT AG AT
1 AT AT AT AT -AT AT AT -AT AT AT AT -AT AT AT AT AT AT AT AT AT
17228181 CAT AT AT
1 -AT AT AT
17228188 CTTGCATTTG
Statistics
Matches: 234, Mismatches: 42, Indels: 46
0.73 0.13 0.14
Matches are distributed among these distances:
1 8 0.03
2 198 0.85
3 28 0.12
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45
Consensus pattern (2 bp):
AT
Found at i:17227903 original size:13 final size:13
Alignment explanation
Indices: 17227887--17228177 Score: 172
Period size: 13 Copynumber: 22.9 Consensus size: 13
17227877 CAAATGCAAG
*
17227887 ATATATGATCTAT
1 ATATATGATATAT
17227900 ATATATAGATATGAT
1 ATATAT-GATAT-AT
*
17227915 ATATATCATATAT
1 ATATATGATATAT
*
17227928 CATATCT-ATATAT
1 -ATATATGATATAT
* *
17227941 CTATAT-ATTATCT
1 ATATATGA-TATAT
* *
17227954 ATATTAT-CTATCT
1 ATA-TATGATATAT
*
17227967 ATATAT-ATATAG
1 ATATATGATATAT
*
17227979 ACTATAT-CTATAT
1 A-TATATGATATAT
17227992 ATATATGATATAT
1 ATATATGATATAT
17228005 ATGATATAGATA-AT
1 AT-ATAT-GATATAT
*
17228019 ATATAT--TATCT
1 ATATATGATATAT
17228030 ATATAT-ATATCAT
1 ATATATGATAT-AT
*
17228043 ATATATCATATAT
1 ATATATGATATAT
*
17228056 ATATATCATATATT
1 ATATATGATATA-T
*
17228070 ATCTAT-ATATAT
1 ATATATGATATAT
*
17228082 ATATTAT-CTATAT
1 ATA-TATGATATAT
*
17228095 ACATATGATATAT
1 ATATATGATATAT
17228108 ATATA-G--ATA-
1 ATATATGATATAT
17228117 ATATA-GATA-AT
1 ATATATGATATAT
17228128 ATATA-GATATAT
1 ATATATGATATAT
*
17228140 AGATATGATATAT
1 ATATATGATATAT
17228153 GATATATG-TCATAT
1 -ATATATGAT-ATAT
*
17228167 CTATAT-ATATA
1 ATATATGATATA
17228178 GATCATATAT
Statistics
Matches: 229, Mismatches: 25, Indels: 49
0.76 0.08 0.16
Matches are distributed among these distances:
9 6 0.03
10 6 0.03
11 17 0.07
12 36 0.16
13 108 0.47
14 44 0.19
15 12 0.05
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45
Consensus pattern (13 bp):
ATATATGATATAT
Found at i:17227920 original size:9 final size:8
Alignment explanation
Indices: 17227887--17228187 Score: 222
Period size: 9 Copynumber: 36.8 Consensus size: 8
17227877 CAAATGCAAG
17227887 ATATATGAT
1 ATATAT-AT
*
17227896 CTATATAT
1 ATATATAT
*
17227904 ATAGATAT
1 ATATATAT
17227912 GATATATAT
1 -ATATATAT
17227921 CATATATCAT
1 -ATATAT-AT
*
17227931 ATCTATAT
1 ATATATAT
*
17227939 ATCTATAT
1 ATATATAT
*
17227947 AT-TATCT
1 ATATATAT
17227954 ATAT-TAT
1 ATATATAT
* *
17227961 CTATCTAT
1 ATATATAT
17227969 ATATATAT
1 ATATATAT
*
17227977 AGACTATAT
1 ATA-TATAT
*
17227986 CTATATAT
1 ATATATAT
17227994 ATATGATAT
1 ATAT-ATAT
17228003 ATATGATAT
1 ATAT-ATAT
*
17228012 AGATA-AT
1 ATATATAT
17228019 ATATAT-T
1 ATATATAT
*
17228026 ATCTATAT
1 ATATATAT
17228034 ATATATCAT
1 ATATAT-AT
17228043 ATATATCAT
1 ATATAT-AT
17228052 ATATATAT
1 ATATATAT
17228060 ATCATATAT
1 AT-ATATAT
*
17228069 -TATCTAT
1 ATATATAT
17228076 ATATATAT
1 ATATATAT
*
17228084 AT-TATCT
1 ATATATAT
*
17228091 ATATACAT
1 ATATATAT
17228099 ATGATATAT
1 AT-ATATAT
*
17228108 ATATAGAT
1 ATATATAT
*
17228116 A-ATATAG
1 ATATATAT
17228123 ATA-ATAT
1 ATATATAT
*
17228130 ATAGATAT
1 ATATATAT
*
17228138 ATAGATAT
1 ATATATAT
17228146 GATATATGAT
1 -ATATAT-AT
*
17228156 ATATGTCAT
1 ATATAT-AT
*
17228165 ATCTATAT
1 ATATATAT
*
17228173 ATATAGAT
1 ATATATAT
17228181 CATATAT
1 -ATATAT
17228188 CTTGCATTTG
Statistics
Matches: 237, Mismatches: 37, Indels: 36
0.76 0.12 0.12
Matches are distributed among these distances:
7 45 0.19
8 92 0.39
9 96 0.41
10 4 0.02
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45
Consensus pattern (8 bp):
ATATATAT
Found at i:17230433 original size:13 final size:14
Alignment explanation
Indices: 17230411--17230451 Score: 73
Period size: 14 Copynumber: 2.9 Consensus size: 14
17230401 ATTCAAAACA
17230411 TTTATAAAAATTAT
1 TTTATAAAAATTAT
17230425 TTTATAAAAATTAT
1 TTTATAAAAATTAT
*
17230439 TTTAAAAAAATTA
1 TTTATAAAAATTA
17230452 AAACTATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
TTTATAAAAATTAT
Found at i:17230973 original size:27 final size:27
Alignment explanation
Indices: 17230950--17231003 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
17230940 AATATTTATG
17230950 ATATTTATT-TTATTTTAAAAATTTTGA
1 ATATTT-TTATTATTTTAAAAATTTTGA
*
17230977 ATATTTTTATTATTTTTAAAATATTTG
1 ATATTTTTATTATTTTAAAAAT-TTTG
17231004 TTGACCATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 2 0.08
27 18 0.75
28 4 0.17
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (27 bp):
ATATTTTTATTATTTTAAAAATTTTGA
Found at i:17235160 original size:12 final size:12
Alignment explanation
Indices: 17235143--17235176 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
17235133 ATTTTTTATG
*
17235143 TATTATTATTTT
1 TATTATTATTGT
*
17235155 TATTATTGTTGT
1 TATTATTATTGT
17235167 TATTATTATT
1 TATTATTATT
17235177 CTTGATTTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.71
Consensus pattern (12 bp):
TATTATTATTGT
Found at i:17237549 original size:26 final size:26
Alignment explanation
Indices: 17237520--17237627 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
17237510 TGGTACAAAT
17237520 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
17237546 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
17237572 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
17237598 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
17237624 TGAT
1 TGAT
17237628 GGGCATTTAA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:17242740 original size:15 final size:16
Alignment explanation
Indices: 17242704--17242733 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
17242694 CACATATATT
17242704 TATTTCATTATATCAA
1 TATTTCATTATATCAA
17242720 TATTTCA-TATATCA
1 TATTTCATTATATCA
17242734 TAGTTTCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (16 bp):
TATTTCATTATATCAA
Found at i:17248714 original size:44 final size:43
Alignment explanation
Indices: 17248567--17248822 Score: 205
Period size: 44 Copynumber: 5.9 Consensus size: 43
17248557 CGGTGAATTC
* * * * *
17248567 ACAGATCTTATTTCCCTAAGTAGTAGTGGAGCAAATCGAAGACG
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGA-T
* * * * * * **
17248611 GC-GAATCTTGTCTCTCTAAGTAGTATTGGAGCAGATTTAAGCC
1 ACAG-ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGAT
* * * *
17248654 AC-CATCCTATCTCCCTAAGCAGTAGTGGAGTAGCTTGAAGATT
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGA-T
* * *
17248697 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGTAGAC
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGAT
* * *
17248740 AGCGGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATT-TA-AT
1 A-CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGAT
* * *
17248782 CCATCATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTTGAA
1 ACA-GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAA
17248823 ATCAACAATT
Statistics
Matches: 167, Mismatches: 39, Indels: 13
0.76 0.18 0.06
Matches are distributed among these distances:
41 1 0.01
42 61 0.37
43 8 0.05
44 97 0.58
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (43 bp):
ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGAT
Found at i:17248727 original size:86 final size:86
Alignment explanation
Indices: 17248656--17248816 Score: 216
Period size: 86 Copynumber: 1.8 Consensus size: 86
17248646 TTTAAGCCAC
* * *
17248656 CATCCTATCTCCCTAAGCAGTAGTGGAGTAGCTTGAAGATTACA-GATCTTATCTCCCTAAGCAG
1 CATCCTATCTCCCTAAGCAGTAGTGGAGCAGATT-AA-A-TACATCATCTTATCTCCCTAAGCAG
17248720 TAGTGGAGCAGATCGTAGACAGCG
63 TAGTGGAGCAGATCGTAGACAGCG
* * * * *
17248744 GATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATTTAATCCATCATCTTATCTCCCTAAGCAGTAG
1 CATCCTATCTCCCTAAGCAGTAGTGGAGCAGATTAAATACATCATCTTATCTCCCTAAGCAGTAG
17248809 TGGAGCAG
66 TGGAGCAG
17248817 GTTGAAATCA
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
85 3 0.05
86 31 0.48
87 1 0.02
88 29 0.45
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (86 bp):
CATCCTATCTCCCTAAGCAGTAGTGGAGCAGATTAAATACATCATCTTATCTCCCTAAGCAGTAG
TGGAGCAGATCGTAGACAGCG
Found at i:17248771 original size:130 final size:130
Alignment explanation
Indices: 17248567--17248822 Score: 386
Period size: 130 Copynumber: 2.0 Consensus size: 130
17248557 CGGTGAATTC
* * * * *
17248567 ACAGATCTTATTTCCCTAAGTAGTAGTGGAGCAAATCGAAGACGGCGAATCTTGTCTCTCTAAGT
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACAGCGAATCTTGTCTCCCTAAGC
* *
17248632 AGTATTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGCTTGAAGATT
66 AGTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGCAGCTTGAAGATT
* * *
17248697 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGTAGACAGCGGATCTTGTCTCCCTAAGC
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACAGCGAATCTTGTCTCCCTAAGC
* * * *
17248762 AGTAGTGGAGCAGATTTAATCCATCATCTTATCTCCCTAAGCAGTAGTGGAGCAGGTTGAA
66 AGTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGCAGCTTGAA
17248823 ATCAACAATT
Statistics
Matches: 112, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
130 112 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (130 bp):
ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACAGCGAATCTTGTCTCCCTAAGC
AGTAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGCAGCTTGAAGATT
Found at i:17248919 original size:88 final size:88
Alignment explanation
Indices: 17248827--17249519 Score: 913
Period size: 88 Copynumber: 7.8 Consensus size: 88
17248817 GTTGAAATCA
* * *
17248827 ACAATTCTTATCTCC-TGAAAGTTCCAGTGGAGTAGATCAAAGCTACAAATCTCTTCTCCCTGAA
1 ACAATTCGTATCTCCTTG-AAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAA
17248891 ATGGCACTGGAGCGGCTCGAAGCC
65 ATGGCACTGGAGCGGCTCGAAGCC
* * * *
17248915 ACAATTCGTATCCCCTTAAAGTTTCAGTGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
* *
17248980 TGGCATTGGAGCAGCTCGAAGCC
66 TGGCACTGGAGCGGCTCGAAGCC
17249003 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
17249068 TGGCACTGGAGTGGCTCGAAGCTCGAAGCC
66 TGGCACTGGA---G--CG--GCTCGAAGCC
* ** *
17249098 ACAATTCGCATCTCCTTGAAGTTTTAGTGGAGTAGATCGAAGCTACAAATCTCTTCTCCCT-AAG
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAA-
*
17249162 ATGGCATTGGAGCGGCTCGAAGCC
65 ATGGCACTGGAGCGGCTCGAAGCC
* * ** * *
17249186 ACAATTCGTATCTCCTTGAAGTTCTAACGGAGTAGATCGAAGCTGTAAATCTTTTCTCCCTGGAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
*
17249251 TGGCACTAGAGCGGCTCGAAGCC
66 TGGCACTGGAGCGGCTCGAAGCC
* * * * *
17249274 ACAATTCATATCTCCTTGTAGTTTCTGCTGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
* * * *
17249339 TGGCACTAGAGTGGCTCAAAGCT
66 TGGCACTGGAGCGGCTCGAAGCC
* ** **
17249362 ACAATTCGTATCTCCTTGAAGTTCCAACGGAGTAGATTAAAGCTACAAATCTCTTCTCTTTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
* *
17249427 TGGTACTGGAGCAGCTCGAAGCC
66 TGGCACTGGAGCGGCTCGAAGCC
* * * * *
17249450 ACAATTCATATCTCCTTAAAGTTCTAGCAGAGTAGATCGAAGCTACAAGTCTCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
17249515 TGGCA
66 TGGCA
17249520 TTAGAGTGAT
Statistics
Matches: 526, Mismatches: 69, Indels: 20
0.86 0.11 0.03
Matches are distributed among these distances:
88 440 0.84
89 2 0.00
90 2 0.00
91 1 0.00
92 1 0.00
93 1 0.00
94 2 0.00
95 77 0.15
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (88 bp):
ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
TGGCACTGGAGCGGCTCGAAGCC
Found at i:17248990 original size:44 final size:44
Alignment explanation
Indices: 17248854--17249519 Score: 287
Period size: 44 Copynumber: 15.0 Consensus size: 44
17248844 AAAGTTCCAG
*
17248854 TGGAGTAGATCAAAGCTACAAATCTCTTCTCCCTGAAATGGCAC
1 TGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCAC
** * * * ** *
17248898 TGGAGCGGCTCGAAGCCAC-AAT-TCGTATC-CCCTTAAAGTTTCAG
1 TGGAGTAGATCGAAGCTACAAATCTC-T-TCTCCCTGAAA-TGGCAC
*
17248942 TGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCAT
1 TGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCAC
* * * * * **
17248986 TGGAGCAGCTCGAAGCCAC-AAT-TCGTATCTCCTTGAAGTTCCAGC
1 TGGAGTAGATCGAAGCTACAAATCTC-T-TCTCCCTGAAATGGCA-C
17249031 -GGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCAC
1 TGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCAC
* * * * * * *** *
17249074 TGGAGTGGCTCGAAGCTCGAAGCCACAATTCGCATCTCCTTGAAGTTTTAG
1 TGGAGTAGATCGAAGCT---A--CA-AA-TCTCTTCTCCCTGAAATGGCAC
*
17249125 TGGAGTAGATCGAAGCTACAAATCTCTTCTCCCT-AAGATGGCAT
1 TGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAA-ATGGCAC
** * * * * *
17249169 TGGAGCGGCTCGAAGCCAC-AAT-TCGTATCTCCTTGAAGT-TCTAAC
1 TGGAGTAGATCGAAGCTACAAATCTC-T-TCTCCCTGAAATGGC--AC
** * *
17249214 -GGAGTAGATCGAAGCTGTAAATCTTTTCTCCCTGGAATGGCAC
1 TGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCAC
* ** * * * * * ** *
17249257 TAGAGCGGCTCGAAGCCAC-AAT-TCATATCTCCTTGTAGTTTCTGC
1 TGGAGTAGATCGAAGCTACAAATCTC-T-TCTCCCTGAAATGGC-AC
17249302 T-GAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCAC
1 TGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCAC
* * * * * * **
17249345 TAGAGTGGCTCAAAGCTAC-AAT-TCGTATCTCCTTGAAGTTCCAAC
1 TGGAGTAGATCGAAGCTACAAATCTC-T-TCTCCCTGAAATGGC-AC
** ** *
17249390 -GGAGTAGATTAAAGCTACAAATCTCTTCTCTTTGAAATGGTAC
1 TGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCAC
* * * * *
17249433 TGGAGCAGCTCGAAGCCAC-AAT-TCATATCT-CCTTAAA-GTTCTAGC
1 TGGAGTAGATCGAAGCTACAAATCTC-T-TCTCCCTGAAATG-GC-A-C
* *
17249478 -AGAGTAGATCGAAGCTACAAGTCTCTTCTCCCTGAAATGGCA
1 TGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCA
17249520 TTAGAGTGAT
Statistics
Matches: 444, Mismatches: 128, Indels: 100
0.66 0.19 0.15
Matches are distributed among these distances:
42 12 0.03
43 45 0.10
44 290 0.65
45 48 0.11
46 14 0.03
47 1 0.00
48 1 0.00
49 2 0.00
50 2 0.00
51 29 0.07
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (44 bp):
TGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCAC
Found at i:17249613 original size:44 final size:44
Alignment explanation
Indices: 17249550--17249705 Score: 186
Period size: 44 Copynumber: 3.5 Consensus size: 44
17249540 AACCTTATCT
* *
17249550 CCTGAAGTTGTAGTGGGGCAGGTAGAAGTTACGAGTCCTATCCC
1 CCTGAAGTTGCAGTGGGGCAGGTAGAAGTTACGAGTCTTATCCC
* *
17249594 CCTGAAGCTGCAGTGGGGCAGGTTGAAGTTACGAGTCATTATCCC
1 CCTGAAGTTGCAGTGGGGCAGGTAGAAGTTACGAGTC-TTATCCC
* * * * *
17249639 TCTGAAGTTGCAGTGGGGAAAGTTGAGAAGTTACAAGTCTTATCTC
1 CCTGAAGTTGCAGTGGGG-CAGGT-AGAAGTTACGAGTCTTATCCC
* *
17249685 CCTGAAGTTACAGTGGAGCAG
1 CCTGAAGTTGCAGTGGGGCAG
17249706 ACTGAAGAAA
Statistics
Matches: 94, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
44 34 0.36
45 24 0.26
46 24 0.26
47 12 0.13
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.26
Consensus pattern (44 bp):
CCTGAAGTTGCAGTGGGGCAGGTAGAAGTTACGAGTCTTATCCC
Found at i:17251565 original size:12 final size:12
Alignment explanation
Indices: 17251548--17251581 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
17251538 ATTTTTTATG
*
17251548 TATTATTATTTT
1 TATTATTATTGT
*
17251560 TATTATTGTTGT
1 TATTATTATTGT
17251572 TATTATTATT
1 TATTATTATT
17251582 CTTGATTTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.71
Consensus pattern (12 bp):
TATTATTATTGT
Found at i:17257827 original size:22 final size:22
Alignment explanation
Indices: 17257800--17257843 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
17257790 TTTATTTTCT
* * *
17257800 CACACATACATATATAAAAAAA
1 CACACATAAAAATAAAAAAAAA
17257822 CACACATAAAAATAAAAAAAAA
1 CACACATAAAAATAAAAAAAAA
17257844 TAAAAAAGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.70, C:0.16, G:0.00, T:0.14
Consensus pattern (22 bp):
CACACATAAAAATAAAAAAAAA
Found at i:17258441 original size:3 final size:3
Alignment explanation
Indices: 17258433--17258523 Score: 71
Period size: 3 Copynumber: 30.0 Consensus size: 3
17258423 TTTTTTATAT
* * * *
17258433 TTA TTA TTA TTA -TG TTA TTTA TTG TTA TTA TTA -CA TTT TTA TATA
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* *
17258478 TATA ATA TT- TATA TTA TTA CTA TTA TTA TTA TTA TTA TTA TTA TTA
1 T-TA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
17258524 GCATTATTTT
Statistics
Matches: 70, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
2 3 0.04
3 57 0.81
4 10 0.14
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:17258745 original size:24 final size:24
Alignment explanation
Indices: 17258718--17258788 Score: 72
Period size: 24 Copynumber: 2.9 Consensus size: 24
17258708 AGATTATTTA
*
17258718 TAAATCATCTTATGTATATATTCT
1 TAAATCATATTATGTATATATTCT
* *
17258742 TAAAT-ACTATTATATATATATTTT
1 TAAATCA-TATTATGTATATATTCT
* *
17258766 TAATAGCATATTGTGTATATATT
1 TAA-ATCATATTATGTATATATT
17258789 ATTATTACTA
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
23 1 0.03
24 22 0.58
25 14 0.37
26 1 0.03
ACGTcount: A:0.37, C:0.07, G:0.06, T:0.51
Consensus pattern (24 bp):
TAAATCATATTATGTATATATTCT
Found at i:17258793 original size:3 final size:3
Alignment explanation
Indices: 17258785--17258843 Score: 57
Period size: 3 Copynumber: 19.7 Consensus size: 3
17258775 ATTGTGTATA
* ** * *
17258785 TAT TAT TAT TACT AAT TAT TAT TAT TGC TAG TAT TGT TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
17258831 TAT TAT TA- TAT TA
1 TAT TAT TAT TAT TA
17258844 GTGTATATCT
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
2 2 0.04
3 41 0.91
4 2 0.04
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:17259187 original size:27 final size:27
Alignment explanation
Indices: 17259133--17259183 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
17259123 ATATTTACCC
* *
17259133 TTTTTACTATTATTACCTATTATTTTA
1 TTTTTAATATTATTAACTATTATTTTA
17259160 TTTTTAATATTATTAA--ATTATTTT
1 TTTTTAATATTATTAACTATTATTTT
17259184 TTATATTCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 8 0.36
27 14 0.64
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (27 bp):
TTTTTAATATTATTAACTATTATTTTA
Found at i:17264452 original size:12 final size:12
Alignment explanation
Indices: 17264419--17264443 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
17264409 AAAAAATTGA
17264419 AATAAATAAGTG
1 AATAAATAAGTG
17264431 AATAAATAAGTG
1 AATAAATAAGTG
17264443 A
1 A
17264444 GTAATTAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.16, T:0.24
Consensus pattern (12 bp):
AATAAATAAGTG
Found at i:17264994 original size:61 final size:59
Alignment explanation
Indices: 17264885--17265000 Score: 162
Period size: 61 Copynumber: 1.9 Consensus size: 59
17264875 ATCACTTTCA
* * * *
17264885 TATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAAT-TTAAATCT
1 TATTAAAATAATAAAATATTTATCAAGATAAACATTAAATTAAATTTAATATTAAATCT
17264943 TATTAAAATAATAAAATATTTACCTACAAGATAAACATTAAATTAAATTTAATATTAA
1 TATTAAAATAATAAAATATTTA--T-CAAGATAAACATTAAATTAAATTTAATATTAA
17265001 GATAATCACT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
58 20 0.40
60 1 0.02
61 25 0.50
62 4 0.08
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.41
Consensus pattern (59 bp):
TATTAAAATAATAAAATATTTATCAAGATAAACATTAAATTAAATTTAATATTAAATCT
Found at i:17265026 original size:20 final size:18
Alignment explanation
Indices: 17264979--17265027 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
17264969 CAAGATAAAC
17264979 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
17264996 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
17265016 ATTAAATTAATA
1 ATTAAATTAATA
17265028 AAATACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:17267783 original size:27 final size:27
Alignment explanation
Indices: 17267735--17267866 Score: 146
Period size: 27 Copynumber: 4.9 Consensus size: 27
17267725 GCGAGGCTGC
* *
17267735 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
17267762 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
* *
17267788 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
17267815 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
17267842 TAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
17267867 GACGCTTCCT
Statistics
Matches: 92, Mismatches: 7, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
26 8 0.09
27 81 0.88
28 3 0.03
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:17267827 original size:54 final size:53
Alignment explanation
Indices: 17267761--17267869 Score: 191
Period size: 54 Copynumber: 2.0 Consensus size: 53
17267751 GTCACCAGAT
17267761 ACAGATATTGTGGCAGAGCCACCAGAACAGATAATTGTGGCATAGCCACCAGG
1 ACAGATATTGTGGCAGAGCCACCAGAACAGATAATTGTGGCATAGCCACCAGG
**
17267814 ACAGATATATGTGGCAGAGCCACCAGATTAGATAATTGTGGCATAGCCACCAGG
1 ACAGATAT-TGTGGCAGAGCCACCAGAACAGATAATTGTGGCATAGCCACCAGG
17267868 AC
1 AC
17267870 GCTTCCTCCA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
53 8 0.15
54 45 0.85
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.18
Consensus pattern (53 bp):
ACAGATATTGTGGCAGAGCCACCAGAACAGATAATTGTGGCATAGCCACCAGG
Found at i:17269498 original size:26 final size:26
Alignment explanation
Indices: 17269467--17269574 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
17269457 TGAAATGCCC
*
17269467 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
17269493 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
17269519 GTCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
17269545 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
17269571 ATCA
1 ATCA
17269575 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:17273655 original size:25 final size:24
Alignment explanation
Indices: 17273627--17273708 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 24
17273617 CGAATACTCA
17273627 ATAGCTCATGAGAACATACCGATTT
1 ATAGCTCATGAG-ACATACCGATTT
* * *
17273652 ATAGCTCGTGAGAGCATATCGATCT
1 ATAGCTCATGAGA-CATACCGATTT
17273677 ATAGCTCAAATGAG-CATACCGATTT
1 ATAGCTC--ATGAGACATACCGATTT
*
17273702 ACAGCTC
1 ATAGCTC
17273709 GTAGGAGCAT
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
24 1 0.02
25 42 0.89
27 4 0.09
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (24 bp):
ATAGCTCATGAGACATACCGATTT
Found at i:17273716 original size:25 final size:25
Alignment explanation
Indices: 17273641--17273720 Score: 90
Period size: 25 Copynumber: 3.2 Consensus size: 25
17273631 CTCATGAGAA
17273641 CATACCGATTTATAGCTCGT-GAGAG
1 CATACCGATTTATAGCTCGTAG-GAG
* * ** *
17273666 CATATCGATCTATAGCTCAAATGAG
1 CATACCGATTTATAGCTCGTAGGAG
*
17273691 CATACCGATTTACAGCTCGTAGGAG
1 CATACCGATTTATAGCTCGTAGGAG
17273716 CATAC
1 CATAC
17273721 ATGTACACGA
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (25 bp):
CATACCGATTTATAGCTCGTAGGAG
Found at i:17274254 original size:22 final size:22
Alignment explanation
Indices: 17274226--17274271 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
17274216 TTGATTTTTG
17274226 TTATAATGGCATGTATAGGTAT
1 TTATAATGGCATGTATAGGTAT
17274248 TTATAATGGCATGTATAGGTAT
1 TTATAATGGCATGTATAGGTAT
17274270 TT
1 TT
17274272 TGGCTAATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.30, C:0.04, G:0.22, T:0.43
Consensus pattern (22 bp):
TTATAATGGCATGTATAGGTAT
Found at i:17274854 original size:52 final size:52
Alignment explanation
Indices: 17274776--17274880 Score: 210
Period size: 52 Copynumber: 2.0 Consensus size: 52
17274766 AGTTGGTTAT
17274776 AAGTACATGACAAATTGGGTAAGAAAAATGTCTTGTAAAATGGCCTATGTTC
1 AAGTACATGACAAATTGGGTAAGAAAAATGTCTTGTAAAATGGCCTATGTTC
17274828 AAGTACATGACAAATTGGGTAAGAAAAATGTCTTGTAAAATGGCCTATGTTC
1 AAGTACATGACAAATTGGGTAAGAAAAATGTCTTGTAAAATGGCCTATGTTC
17274880 A
1 A
17274881 TCCACACGGG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.39, C:0.11, G:0.21, T:0.29
Consensus pattern (52 bp):
AAGTACATGACAAATTGGGTAAGAAAAATGTCTTGTAAAATGGCCTATGTTC
Found at i:17276216 original size:16 final size:17
Alignment explanation
Indices: 17276195--17276229 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
17276185 AATTTGGATA
17276195 AGAAAATT-ATTTAATT
1 AGAAAATTAATTTAATT
*
17276211 AGAAAATTAATTTAGTT
1 AGAAAATTAATTTAATT
17276228 AG
1 AG
17276230 TTTAATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.40
Consensus pattern (17 bp):
AGAAAATTAATTTAATT
Found at i:17279350 original size:42 final size:42
Alignment explanation
Indices: 17279242--17279352 Score: 152
Period size: 42 Copynumber: 2.6 Consensus size: 42
17279232 CTCGGCCAAA
*
17279242 ACACATACCCGTGTTCTAGGCCGTGTGGTACACACGGCTGAG
1 ACACACACCCGTGTTCTAGGCCGTGTGGTACACACGGCTGAG
* ** *
17279284 ACACACGCCTTTGTTCTAGGCCGTGTGGTACACATGGCTGAG
1 ACACACACCCGTGTTCTAGGCCGTGTGGTACACACGGCTGAG
*
17279326 ACACACACCCGTGTCTCTA-CCCGTGTG
1 ACACACACCCGTGT-TCTAGGCCGTGTG
17279353 CCCAATTCTG
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 55 0.93
43 4 0.07
ACGTcount: A:0.20, C:0.31, G:0.26, T:0.23
Consensus pattern (42 bp):
ACACACACCCGTGTTCTAGGCCGTGTGGTACACACGGCTGAG
Found at i:17285012 original size:5 final size:5
Alignment explanation
Indices: 17285002--17285026 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
17284992 ATTGTTTAAA
17285002 CTTTT CTTTT CTTTT CTTTT CTTTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT
17285027 TTAATTCATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
CTTTT
Found at i:17287367 original size:79 final size:79
Alignment explanation
Indices: 17287233--17287393 Score: 243
Period size: 79 Copynumber: 2.0 Consensus size: 79
17287223 CAAGTTAGAT
* * * *
17287233 TTTTCCTCCCGATTTTCAATATTTTTAGTTGGCTTTGAAATTTTTCAGGAGGAAAAGGAAATCAA
1 TTTTCCTCCCGATTTTCAATATTTTTAGTTGGATTTAAAATTTTTCAGGAAGAAAAAGAAATCAA
* *
17287298 GAGGAAAAATCTGA
66 GAGAAAAAATCTAA
*
17287312 TTTTCCTCCTGAGTTTT-AATATTTTTAGTTGGATTTAAAATTTTTCAGGAAGAAAAAGAAATCA
1 TTTTCCTCCCGA-TTTTCAATATTTTTAGTTGGATTTAAAATTTTTCAGGAAGAAAAAGAAATCA
17287376 AGAGAAAAAATCTAA
65 AGAGAAAAAATCTAA
17287391 TTT
1 TTT
17287394 GTCATTCTCC
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
79 70 0.95
80 4 0.05
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.37
Consensus pattern (79 bp):
TTTTCCTCCCGATTTTCAATATTTTTAGTTGGATTTAAAATTTTTCAGGAAGAAAAAGAAATCAA
GAGAAAAAATCTAA
Found at i:17288031 original size:14 final size:15
Alignment explanation
Indices: 17288007--17288035 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
17287997 AGAACTGGAA
17288007 AAATAAAATAAAATT
1 AAATAAAATAAAATT
17288022 AAAT-AAATAAAATT
1 AAATAAAATAAAATT
17288036 TGTGGGCGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
AAATAAAATAAAATT
Found at i:17288587 original size:28 final size:27
Alignment explanation
Indices: 17288538--17288592 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 27
17288528 TGAACTGATA
*
17288538 TAATAATTTTTGTATTTTAAATTATTT
1 TAATAATTTTTGAATTTTAAATTATTT
*
17288565 TAATATTTTTATGAATTTTAAATTATTT
1 TAATAATTTT-TGAATTTTAAATTATTT
17288593 ATTTAATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 9 0.36
28 16 0.64
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.62
Consensus pattern (27 bp):
TAATAATTTTTGAATTTTAAATTATTT
Found at i:17290090 original size:3 final size:3
Alignment explanation
Indices: 17290084--17290116 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
17290074 AAAAAAGATG
17290084 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
17290117 GACTAGATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:17291641 original size:97 final size:96
Alignment explanation
Indices: 17291540--17291720 Score: 245
Period size: 97 Copynumber: 1.9 Consensus size: 96
17291530 TTGTAATTTC
* * * * *
17291540 TAGCTTTAATCTATTCCACTACAACTTCAGGGAAATGAGATTTGCTATCTTTAGTCTGCTCCTAC
1 TAGCTTCAATCTACTCCACTACAACTTCAGGGAAATAAGATCTGATATCTTTAGTCTGCTCCT-C
17291605 TACAACTTCAAGGAGATAAGACTCGCAACTTT
65 TACAACTTCAAGGAGATAAGACTCGCAACTTT
* ** *
17291637 TAGCTTCAATCTGCTCCACTGTAACTTTAGGGAAATAAGATCTGATATCTTTAGTCTGCTCCTCT
1 TAGCTTCAATCTACTCCACTACAACTTCAGGGAAATAAGATCTGATATCTTTAGTCTGCTCCTCT
* * *
17291702 GCAACTTTAGGGAGATAAG
66 ACAACTTCAAGGAGATAAG
17291721 GCTGGTGGCT
Statistics
Matches: 72, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
96 18 0.25
97 54 0.75
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.33
Consensus pattern (96 bp):
TAGCTTCAATCTACTCCACTACAACTTCAGGGAAATAAGATCTGATATCTTTAGTCTGCTCCTCT
ACAACTTCAAGGAGATAAGACTCGCAACTTT
Found at i:17291710 original size:45 final size:45
Alignment explanation
Indices: 17291637--17291768 Score: 151
Period size: 45 Copynumber: 3.0 Consensus size: 45
17291627 TCGCAACTTT
*
17291637 TAGCTTCAATCTGCTCCACTGTAACTTTAGGGAAATAAGATCTGA
1 TAGCTTCAATCTGCTCCACTGCAACTTTAGGGAAATAAGATCTGA
* * * * * * *
17291682 TATCTTTAGTCTGCTCCTCTGCAACTTTAGGGAGATAAG-GCTGG
1 TAGCTTCAATCTGCTCCACTGCAACTTTAGGGAAATAAGATCTGA
* *
17291726 TGGCTTCAATCTGCTCCACTACAACTTTA-GGAAGATAAGATCT
1 TAGCTTCAATCTGCTCCACTGCAACTTTAGGGAA-ATAAGATCT
17291769 ACCATAATTT
Statistics
Matches: 69, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
43 3 0.04
44 31 0.45
45 35 0.51
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (45 bp):
TAGCTTCAATCTGCTCCACTGCAACTTTAGGGAAATAAGATCTGA
Found at i:17291754 original size:44 final size:45
Alignment explanation
Indices: 17291637--17291765 Score: 152
Period size: 44 Copynumber: 2.9 Consensus size: 45
17291627 TCGCAACTTT
* * *
17291637 TAGCTTCAATCTGCTCCACTGTAACTTTAGGGAAATAAGATCTGA
1 TAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGAGCTGA
* * * * *
17291682 TATCTTTAGTCTGCTCCTCTGCAACTTTAGGGAGATAAG-GCTGG
1 TAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGAGCTGA
* * *
17291726 TGGCTTCAATCTGCTCCACTACAACTTTAGGAAGATAAGA
1 TAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGA
17291766 TCTACCATAA
Statistics
Matches: 68, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
44 35 0.51
45 33 0.49
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (45 bp):
TAGCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGAGCTGA
Found at i:17292037 original size:44 final size:45
Alignment explanation
Indices: 17291925--17292337 Score: 172
Period size: 44 Copynumber: 8.8 Consensus size: 45
17291915 ATAATTTGTA
* * * * * *
17291925 GCTTTAATCTGTTCCACTGCAACGTCAGGGAAATAAGA-TTCGCTG
1 GCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGAGTT-GGTG
* * * *
17291970 TCTTCAATCTGCTTCGCTGCAACTTTAGAGAGATAAG-GTTGGTG
1 GCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGAGTTGGTG
* * * * *
17292014 GCTTCAATCTGCTCCACTACAACTTCAGGAAGATAAGATCCGTCATAATTTGTA
1 GCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGA---G------TTGGTG
* * * * *
17292068 GCTTCAATCTGTTCCACTGTAACTTTAGGGAAATAAGATTTGCTG
1 GCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGAGTTGGTG
* *
17292113 TCTTCAATCTGCTCCACTGCAA-TTTCAGGGAGATAAGA-CTGGTG
1 GCTTCAATCTGCTCCACTGCAACTTT-AGGGAGATAAGAGTTGGTG
* * * * * * *
17292157 ACTTCAATCTGCTCCAATACAACTTCAGGAAGATAAGATCCGCCATAAATTGTA
1 GCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGA---G---T---TGGTG
* * * * * * * **
17292211 GCTTTAATCTGTTCCACTACAACGTCAGGTAAATAAGA-TTCACTG
1 GCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGAGTT-GGTG
* * * * * *
17292256 TCTTCAGTCTGCTCCACAGTAACTTCAGGGAGATAAG-GCTGGTG
1 GCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGAGTTGGTG
* * *
17292300 GCTTCAATCTGCTCCATTACAACTTTAGGAAGATAAGA
1 GCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGA
17292338 TCTACCATAA
Statistics
Matches: 268, Mismatches: 74, Indels: 52
0.68 0.19 0.13
Matches are distributed among these distances:
44 102 0.38
45 94 0.35
47 1 0.00
48 1 0.00
54 70 0.26
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (45 bp):
GCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGAGTTGGTG
Found at i:17292141 original size:99 final size:98
Alignment explanation
Indices: 17291971--17292150 Score: 245
Period size: 99 Copynumber: 1.8 Consensus size: 98
17291961 GATTCGCTGT
* * *
17291971 CTTCAATCTGCTTCGCTGCAACTTTAGAGAGATAAGGTTGGTGGCTTCAATCTGCTCCACTACAA
1 CTTCAATCTGCTTCACTGCAACTTTAGAGAAATAAGGTTGCTGGCTTCAATCTGCTCCACTACAA
17292036 CTTCAGGAAGATAAGATCCGTCATAATTTGTAG
66 CTTCAGGAAGATAAGATCCGTCATAATTTGTAG
* * * * *
17292069 CTTCAATCTG-TTCCACTGTAACTTTAGGGAAATAAGATTTGCTGTCTTCAATCTGCTCCACTGC
1 CTTCAATCTGCTT-CACTGCAACTTTAGAGAAATAAG-GTTGCTGGCTTCAATCTGCTCCACTAC
* *
17292133 AATTTCAGGGAGATAAGA
64 AACTTCAGGAAGATAAGA
17292151 CTGGTGACTT
Statistics
Matches: 70, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
97 2 0.03
98 29 0.41
99 39 0.56
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (98 bp):
CTTCAATCTGCTTCACTGCAACTTTAGAGAAATAAGGTTGCTGGCTTCAATCTGCTCCACTACAA
CTTCAGGAAGATAAGATCCGTCATAATTTGTAG
Found at i:17292436 original size:429 final size:427
Alignment explanation
Indices: 17291594--17292436 Score: 1210
Period size: 429 Copynumber: 2.0 Consensus size: 427
17291584 CTATCTTTAG
*
17291594 TCTGCTCCTACTACAACTTCAAGGAGATAAGACTCGCAACTTTTAGCTTCAATCTGCTCCACTGT
1 TCTGCTCCTACTACAACTTCAAGGAGATAAGACTCGCAAATTTTAGCTTCAATCTGCTCCACTGT
* * * *
17291659 AACTTTAGGGAAATAAGATCTGATATCTTTAGTCTGCTCCTCTGCAACTTTAGGGAGATAAGGCT
66 AACTTTAGGGAAATAAGATCTGATATCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGACT
* * * * *
17291724 GGTGGCTTCAATCTGCTCCACTACAACTTTAGGAAGATAAGATCTACCATAATTTGTAGCTTTAA
131 GGTGACTTCAATCTGCTCCAATACAACTTCAGGAAGATAAGATCCACCATAAATTGTAGCTTTAA
* * * * * ** *
17291789 TCTATTCCACTACAATGTCAAGGAAATAAGATTCGCTGTTTTTAGTTTGCTCTGCTGCAAATTCA
196 TCTATTCCACTACAACGTCAAGGAAATAAGATTCACTGTCTTCAGTCTGCTCCACAGCAAATTCA
*
17291854 AGGAGATAAGGCTGGTGGCTTCAATCTGCTCCAATGCAACTTCAAGAAGATAAGATCCACCATAA
261 AGGAGATAAGGCTGGTGGCTTCAATCTGCTCCAATACAACTTCAAGAAGATAAGATCCACCATAA
* * * *
17291919 TTTGTAGCTTTAATCTGTTCCACTGCAACGTCAGGGAAATAAGATTCGCTGTCTTCAATCTGCTT
326 TTTGTAGCTTCAATCTGTTCCACTACAACGTCAGGGAAATAAGATTCGCTGTCTTCAATCTACTC
* *
17291984 CGCTGCAACTTTAGAGAGATAAGGTTGGTGGCTTCAA
391 CGCTGCAACTTCAAAGAGATAAGGTTGGTGGCTTCAA
*
17292021 TCTGCTCC-ACTACAACTTC-AGGAAGATAAGA-TCCGTCATAATTTGTAGCTTCAATCTGTTCC
1 TCTGCTCCTACTACAACTTCAAGG-AGATAAGACT-CG-CA-AATTT-TAGCTTCAATCTGCTCC
* * *
17292083 ACTGTAACTTTAGGGAAATAAGATTTGCTGTCTTCAATCTGCTCCACTGCAA-TTTCAGGGAGAT
61 ACTGTAACTTTAGGGAAATAAGATCTGATATCTTCAATCTGCTCCACTGCAACTTT-AGGGAGAT
*
17292147 AAGACTGGTGACTTCAATCTGCTCCAATACAACTTCAGGAAGATAAGATCCGCCATAAATTGTAG
125 AAGACTGGTGACTTCAATCTGCTCCAATACAACTTCAGGAAGATAAGATCCACCATAAATTGTAG
* *
17292212 CTTTAATCTGTTCCACTACAACGTC-AGGTAAATAAGATTCACTGTCTTCAGTCTGCTCCACAGT
190 CTTTAATCTATTCCACTACAACGTCAAGG-AAATAAGATTCACTGTCTTCAGTCTGCTCCACAGC
* * * * * *
17292276 AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCATTACAACTTTAGGAAGATAAGATCT
254 AAATTCAAGGAGATAAGGCTGGTGGCTTCAATCTGCTCCAATACAACTTCAAGAAGATAAGATCC
* * *
17292341 ACCATAATTTGTAGCTTCAATCTGTTCCACTACAACTTCAGGGAAATAAGATTTGCTGTCTTCAG
319 ACCATAATTTGTAGCTTCAATCTGTTCCACTACAACGTCAGGGAAATAAGATTCGCTGTCTTCAA
*
17292406 TCTACTCCGTTGCAACTTCAAAGAGATAAGG
384 TCTACTCCGCTGCAACTTCAAAGAGATAAGG
17292437 CTTATGACTT
Statistics
Matches: 367, Mismatches: 42, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
425 4 0.01
426 21 0.06
427 10 0.03
428 10 0.03
429 322 0.88
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (427 bp):
TCTGCTCCTACTACAACTTCAAGGAGATAAGACTCGCAAATTTTAGCTTCAATCTGCTCCACTGT
AACTTTAGGGAAATAAGATCTGATATCTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGACT
GGTGACTTCAATCTGCTCCAATACAACTTCAGGAAGATAAGATCCACCATAAATTGTAGCTTTAA
TCTATTCCACTACAACGTCAAGGAAATAAGATTCACTGTCTTCAGTCTGCTCCACAGCAAATTCA
AGGAGATAAGGCTGGTGGCTTCAATCTGCTCCAATACAACTTCAAGAAGATAAGATCCACCATAA
TTTGTAGCTTCAATCTGTTCCACTACAACGTCAGGGAAATAAGATTCGCTGTCTTCAATCTACTC
CGCTGCAACTTCAAAGAGATAAGGTTGGTGGCTTCAA
Found at i:17292481 original size:143 final size:143
Alignment explanation
Indices: 17291594--17292438 Score: 1038
Period size: 143 Copynumber: 5.9 Consensus size: 143
17291584 CTATCTTTAG
* * *
17291594 TCTGCTCCTACTACAACTTCAAGG-AGATAAGA-CTC-GCA-ACTTT-TAGCTTCAATCTGCTCC
1 TCTGCTCC-ACTACAACTTC-AGGAAGATAAGATC-CACCATAATTTGTAGCTTCAATCTGTTCC
** * * * * * *
17291654 ACTGTAACTTTAGGGAAATAAGA-TCTGATATCTTTAGTCTGCTCCTCTGCAACTTTAGGGAGAT
63 ACTACAACTTCAGGGAAATAAGATTC-GCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGAT
17291718 AAGGCTGGTGGCTTCAA
127 AAGGCTGGTGGCTTCAA
* * * *
17291735 TCTGCTCCACTACAACTTTAGGAAGATAAGATCTACCATAATTTGTAGCTTTAATCTATTCCACT
1 TCTGCTCCACTACAACTTCAGGAAGATAAGATCCACCATAATTTGTAGCTTCAATCTGTTCCACT
* * * * * * *
17291800 ACAA-TGTCAAGGAAATAAGATTCGCTGTTTTTAGTTTGCTCTGCTGCAAATTCAAGGAGATAAG
66 ACAACT-TCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAG
17291864 GCTGGTGGCTTCAA
130 GCTGGTGGCTTCAA
* * * *
17291878 TCTGCTCCAATGCAACTTCAAGAAGATAAGATCCACCATAATTTGTAGCTTTAATCTGTTCCACT
1 TCTGCTCCACTACAACTTCAGGAAGATAAGATCCACCATAATTTGTAGCTTCAATCTGTTCCACT
* * * * * *
17291943 GCAACGTCAGGGAAATAAGATTCGCTGTCTTCAATCTGCTTCGCTGCAACTTTAGAGAGATAAGG
66 ACAACTTCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGG
*
17292008 TTGGTGGCTTCAA
131 CTGGTGGCTTCAA
**
17292021 TCTGCTCCACTACAACTTCAGGAAGATAAGATCCGTCATAATTTGTAGCTTCAATCTGTTCCACT
1 TCTGCTCCACTACAACTTCAGGAAGATAAGATCCACCATAATTTGTAGCTTCAATCTGTTCCACT
** * * * * * *
17292086 GTAACTTTAGGGAAATAAGATTTGCTGTCTTCAATCTGCTCCACTGCAATTTCAGGGAGATAAGA
66 ACAACTTCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGG
*
17292151 CTGGTGACTTCAA
131 CTGGTGGCTTCAA
* * * *
17292164 TCTGCTCCAATACAACTTCAGGAAGATAAGATCCGCCATAAATTGTAGCTTTAATCTGTTCCACT
1 TCTGCTCCACTACAACTTCAGGAAGATAAGATCCACCATAATTTGTAGCTTCAATCTGTTCCACT
* * * * * *
17292229 ACAACGTCAGGTAAATAAGATTCACTGTCTTCAGTCTGCTCCACAGTAACTTCAGGGAGATAAGG
66 ACAACTTCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGG
17292294 CTGGTGGCTTCAA
131 CTGGTGGCTTCAA
* * *
17292307 TCTGCTCCATTACAACTTTAGGAAGATAAGATCTACCATAATTTGTAGCTTCAATCTGTTCCACT
1 TCTGCTCCACTACAACTTCAGGAAGATAAGATCCACCATAATTTGTAGCTTCAATCTGTTCCACT
* * * **
17292372 ACAACTTCAGGGAAATAAGATTTGCTGTCTTCAGTCTACTCCGTTGCAACTTCAAAGAGATAAGG
66 ACAACTTCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGG
17292437 CT
131 CT
17292439 TATGACTTTG
Statistics
Matches: 604, Mismatches: 92, Indels: 14
0.85 0.13 0.02
Matches are distributed among these distances:
139 3 0.00
140 18 0.03
141 11 0.02
142 5 0.01
143 565 0.94
144 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (143 bp):
TCTGCTCCACTACAACTTCAGGAAGATAAGATCCACCATAATTTGTAGCTTCAATCTGTTCCACT
ACAACTTCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGG
CTGGTGGCTTCAA
Found at i:17293063 original size:65 final size:65
Alignment explanation
Indices: 17292959--17293082 Score: 187
Period size: 65 Copynumber: 1.9 Consensus size: 65
17292949 AATGATGGAC
* * *
17292959 AAGAAGGAAATTGATTGAGAGCATAGCTCAAGACAAATAAGTTAATCAAAGATGGCAAATGCAAT
1 AAGAAAGAAATTGATTGAGAGCATAGCTCAAGACAAATAAATTAATCAAAGATAGCAAATGCAAT
**
17293024 AAGAAAGAAATTGATTGAGAGCATAGCTCGAA-ATGAATAAATTAATCAAAGATAGCAAA
1 AAGAAAGAAATTGATTGAGAGCATAGCTC-AAGACAAATAAATTAATCAAAGATAGCAAA
17293083 CTTTGCTAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
65 51 0.96
66 2 0.04
ACGTcount: A:0.50, C:0.10, G:0.20, T:0.20
Consensus pattern (65 bp):
AAGAAAGAAATTGATTGAGAGCATAGCTCAAGACAAATAAATTAATCAAAGATAGCAAATGCAAT
Found at i:17296399 original size:52 final size:53
Alignment explanation
Indices: 17296326--17296518 Score: 155
Period size: 47 Copynumber: 3.9 Consensus size: 53
17296316 CCATGGCAAC
* * *
17296326 ATGTGATATGTGATTTTCGTATAAGACCATAGCT-GGCTATGGCATCGTAGAG
1 ATGTGATATGTGACTTCCGTATAAGACCATAGCTGGGATATGGCATCGTAGAG
*
17296378 ATGTGATTATGTG-CTTCCGTATAAGACCATATCTGGGATATGGCATC---G-G
1 ATGTGA-TATGTGACTTCCGTATAAGACCATAGCTGGGATATGGCATCGTAGAG
* * ** *
17296427 -TGTGATATATG-CTACTATATAAGACCATATCTGGGATATGGCATC----AG
1 ATGTGATATGTGACTTCCGTATAAGACCATAGCTGGGATATGGCATCGTAGAG
* * * *
17296474 -TGAGATATGTGA-TT-CATGTAAGACCATAGCTGGGCTATGGCATCG
1 ATGTGATATGTGACTTCCGTATAAGACCATAGCTGGGATATGGCATCG
17296519 ATATATGAAT
Statistics
Matches: 121, Mismatches: 15, Indels: 15
0.80 0.10 0.10
Matches are distributed among these distances:
46 26 0.21
47 47 0.39
48 5 0.04
49 1 0.01
50 1 0.01
52 24 0.20
53 17 0.14
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (53 bp):
ATGTGATATGTGACTTCCGTATAAGACCATAGCTGGGATATGGCATCGTAGAG
Found at i:17296450 original size:47 final size:46
Alignment explanation
Indices: 17296397--17296518 Score: 163
Period size: 47 Copynumber: 2.6 Consensus size: 46
17296387 TGTGCTTCCG
* *
17296397 TATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTACTA
1 TATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATAC-A
* * *
17296444 TATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATTCA
1 TATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATACA
* * *
17296490 TGTAAGACCATAGCTGGGCTATGGCATCG
1 TATAAGACCATATCTGGGATATGGCATCG
17296519 ATATATGAAT
Statistics
Matches: 66, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
46 26 0.39
47 40 0.61
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (46 bp):
TATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATACA
Found at i:17296547 original size:42 final size:43
Alignment explanation
Indices: 17296490--17296603 Score: 169
Period size: 42 Copynumber: 2.7 Consensus size: 43
17296480 ATGTGATTCA
*
17296490 TGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATATG
1 TGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGATG
*
17296532 TGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGATG
1 TGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGATG
* **
17296574 TGTAAGACCATAGTTGAACTATGGCATCGA
1 TGTAAGACCATAGCTGGGCTATGGCATCGA
17296604 GAAAATGAAG
Statistics
Matches: 65, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
41 1 0.02
42 63 0.97
43 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (43 bp):
TGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGATG
Found at i:17301662 original size:131 final size:130
Alignment explanation
Indices: 17301406--17301665 Score: 296
Period size: 131 Copynumber: 2.0 Consensus size: 130
17301396 ATTTTTTATT
* * *
17301406 TTTAAAATCTCATGTGTTTTAATTTAGAAGAATATTCGGTTATTTAGATCCAACGAGAAAAATTG
1 TTTAAAATCTCATGTATTTTAATTTAAAAGAATATTCGGCTATTTAGATCCAACGAGAAAAATTG
* * * * *
17301471 AAACCCTGTAAGTTAGGGCATGACTTCCTCGAGTTTCTAAATACAGAATATTGCCTTTATTTTTA
66 AAACCCTGTAAGTTAGGGCATCAATTCCTCGAGTTCCAAAATACAGAACATTGCCTTTATTTTTA
* * * *
17301536 TTTAAAAT-TCATGTATTTTAAAATTTAAAAGAATATTTGGCTATTTAGGTTCGACGAGAAAAAT
1 TTTAAAATCTCATGTATTTT--AATTTAAAAGAATATTCGGCTATTTAGATCCAACGAGAAAAAT
* * *
17301600 TGAAACCTTGTAAGTTAGGGTA-CAATTCTCTCGTA-TTACCAAAATTC-GAAACATTGCC-TTA
64 TGAAACCCTGTAAGTTAGGGCATCAATTC-CTCG-AGTT-CCAAAATACAG-AACATTGCCTTTA
17301661 TTTTT
125 TTTTT
17301666 GAAAATTTTA
Statistics
Matches: 109, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
129 10 0.09
130 12 0.11
131 72 0.66
132 15 0.14
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (130 bp):
TTTAAAATCTCATGTATTTTAATTTAAAAGAATATTCGGCTATTTAGATCCAACGAGAAAAATTG
AAACCCTGTAAGTTAGGGCATCAATTCCTCGAGTTCCAAAATACAGAACATTGCCTTTATTTTTA
Found at i:17302021 original size:32 final size:31
Alignment explanation
Indices: 17301957--17302021 Score: 78
Period size: 32 Copynumber: 2.1 Consensus size: 31
17301947 AACAAGAGTA
* *
17301957 ATAAAAAATAATAAAATAACATATAAAGGAG
1 ATAAAAAAAAATAAAATAACATAAAAAGGAG
*
17301988 ATAAAATAAAAATAAAATAA-AGTAAAAATGAG
1 ATAAAA-AAAAATAAAATAACA-TAAAAAGGAG
17302020 AT
1 AT
17302022 GACAATATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
31 7 0.24
32 22 0.76
ACGTcount: A:0.69, C:0.02, G:0.09, T:0.20
Consensus pattern (31 bp):
ATAAAAAAAAATAAAATAACATAAAAAGGAG
Found at i:17303455 original size:20 final size:18
Alignment explanation
Indices: 17303419--17303469 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
17303409 AAGGGCTATT
*
17303419 TTGTAAAGTTGTAAAATAA
1 TTGTAAA-TTGTGAAATAA
17303438 GTTGTAAATATGTGAAATAA
1 -TTGTAAAT-TGTGAAATAA
17303458 TTG-AAATTGTGA
1 TTGTAAATTGTGA
17303470 GTTGCTATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (18 bp):
TTGTAAATTGTGAAATAA
Found at i:17304246 original size:42 final size:44
Alignment explanation
Indices: 17304188--17304273 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 44
17304178 TATATATGAG
* * *
17304188 GCATCTGAGCTCGTTGAGTTGAT-CAACTTCATTATGGATGCGA
1 GCATCTGAACTCGTTGAATTGATCCAACTTCATAATGGATGCGA
* *
17304231 GCATC-GAACTCGTTGAATTGGTCCAAGTTCATAATGGATGCGA
1 GCATCTGAACTCGTTGAATTGATCCAACTTCATAATGGATGCGA
17304274 TACATGAAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
42 14 0.38
43 23 0.62
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (44 bp):
GCATCTGAACTCGTTGAATTGATCCAACTTCATAATGGATGCGA
Found at i:17306306 original size:19 final size:22
Alignment explanation
Indices: 17306282--17306334 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 22
17306272 CGGCTTGAGG
17306282 ACACGGGCGTGTCC-TG-G-GC
1 ACACGGGCGTGTCCTTGTGCGC
* *
17306301 ACACGGGTGTGTCCTTGTGCTC
1 ACACGGGCGTGTCCTTGTGCGC
17306323 ACACGGGCGTGT
1 ACACGGGCGTGT
17306335 GACCCTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 13 0.46
20 2 0.07
21 1 0.04
22 12 0.43
ACGTcount: A:0.11, C:0.28, G:0.38, T:0.23
Consensus pattern (22 bp):
ACACGGGCGTGTCCTTGTGCGC
Found at i:17308006 original size:14 final size:14
Alignment explanation
Indices: 17307987--17308024 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
17307977 GTTTGTCAGT
*
17307987 AAAATATTTTCCGG
1 AAAATAATTTCCGG
*
17308001 AAAATAATTTCTGG
1 AAAATAATTTCCGG
17308015 AAAATAATTT
1 AAAATAATTT
17308025 ACTTTTCTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.45, C:0.08, G:0.11, T:0.37
Consensus pattern (14 bp):
AAAATAATTTCCGG
Found at i:17308043 original size:19 final size:20
Alignment explanation
Indices: 17308008--17308051 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
17307998 CGGAAAATAA
17308008 TTTCTGGAAAATAATTTACT
1 TTTCTGGAAAATAATTTACT
*
17308028 TTTCTGG-AAATGATTTACT
1 TTTCTGGAAAATAATTTACT
17308047 TTTCT
1 TTTCT
17308052 AGTGTTTGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.27, C:0.11, G:0.11, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATAATTTACT
Found at i:17310913 original size:15 final size:15
Alignment explanation
Indices: 17310868--17310913 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
17310858 GCCAATTCAA
17310868 GGAGTTGAGGATTAT
1 GGAGTTGAGGATTAT
*
17310883 GGA--AGAGGATCT-T
1 GGAGTTGAGGAT-TAT
17310896 GGAGTTGAGGATTAT
1 GGAGTTGAGGATTAT
17310911 GGA
1 GGA
17310914 AGACAAGCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 8
0.71 0.06 0.23
Matches are distributed among these distances:
13 10 0.40
14 2 0.08
15 13 0.52
ACGTcount: A:0.28, C:0.02, G:0.41, T:0.28
Consensus pattern (15 bp):
GGAGTTGAGGATTAT
Found at i:17316487 original size:104 final size:104
Alignment explanation
Indices: 17316307--17316530 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
17316297 TGTGTATAAA
** * *
17316307 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
17316372 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
17316411 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
17316475 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
17316515 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
17316531 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:17316582 original size:71 final size:72
Alignment explanation
Indices: 17316449--17316600 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
17316439 TCATTGGTGG
* *
17316449 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
17316514 GAGGGGT
66 GAGGGGT
***
17316521 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
17316585 GAGGGGT
66 GAGGGGT
17316592 TGCTAAGTG
1 TGCTAAGTG
17316601 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:17324047 original size:104 final size:103
Alignment explanation
Indices: 17323867--17324089 Score: 367
Period size: 104 Copynumber: 2.2 Consensus size: 103
17323857 TGTATATAAA
** * *
17323867 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
17323932 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
* *
17323971 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
17324035 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
17324074 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
17324090 GATATCCATT
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 21 0.19
104 90 0.80
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:17324141 original size:70 final size:71
Alignment explanation
Indices: 17324009--17324158 Score: 248
Period size: 70 Copynumber: 2.1 Consensus size: 71
17323999 TCATTGGTGG
* *
17324009 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCG
17324074 AGGGGT
66 AGGGGT
***
17324080 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCG
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCG
17324144 AGGGGT
66 AGGGGT
17324150 TGCTAAGTG
1 TGCTAAGTG
17324159 ATGATTCCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
70 44 0.59
71 30 0.41
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.31
Consensus pattern (71 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCG
AGGGGT
Found at i:17324154 original size:26 final size:26
Alignment explanation
Indices: 17324119--17324170 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17324109 AAATGAAAAG
* *
17324119 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
17324145 GGGGTTGCTAAGTGATGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
17324171 TTCAGTGGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.15, C:0.21, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGATGATTCCCCGA
Found at i:17327610 original size:33 final size:33
Alignment explanation
Indices: 17327573--17327642 Score: 83
Period size: 33 Copynumber: 2.1 Consensus size: 33
17327563 TATTTATACA
17327573 ATTATAATATT-TTATT-TAAATT-AGTAGATATTT
1 ATTAT-ATATTATTATTAT-AATTAAG-AGATATTT
*
17327606 ATTATTTATTATTATTATAATTAAGAGATATTT
1 ATTATATATTATTATTATAATTAAGAGATATTT
17327639 ATTA
1 ATTA
17327643 ATTAAATAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
32 4 0.12
33 26 0.79
34 3 0.09
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (33 bp):
ATTATATATTATTATTATAATTAAGAGATATTT
Found at i:17328962 original size:45 final size:45
Alignment explanation
Indices: 17328897--17328996 Score: 166
Period size: 45 Copynumber: 2.2 Consensus size: 45
17328887 ATGTGCCGAC
*
17328897 TACCGTTACTGTTACCGATTC-GACACTTTGTGTGTCGAATACTGT
1 TACCGTTACTGTTACAGATTCAG-CACTTTGTGTGTCGAATACTGT
*
17328942 TACCGTTACTGTTACAGATTCAGCACTTTGTGTGTTGAATACTGT
1 TACCGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAATACTGT
17328987 TACCGTTACT
1 TACCGTTACT
17328997 ACTACTGCTA
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
45 51 0.98
46 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.39
Consensus pattern (45 bp):
TACCGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAATACTGT
Found at i:17334328 original size:33 final size:33
Alignment explanation
Indices: 17334291--17334360 Score: 83
Period size: 33 Copynumber: 2.1 Consensus size: 33
17334281 TATTTATACA
17334291 ATTATAATATT-TTATT-TAAATT-AGTAGATATTT
1 ATTAT-ATATTATTATTAT-AATTAAG-AGATATTT
*
17334324 ATTATTTATTATTATTATAATTAAGAGATATTT
1 ATTATATATTATTATTATAATTAAGAGATATTT
17334357 ATTA
1 ATTA
17334361 ATTAAATAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
32 4 0.12
33 26 0.79
34 3 0.09
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (33 bp):
ATTATATATTATTATTATAATTAAGAGATATTT
Found at i:17335698 original size:45 final size:45
Alignment explanation
Indices: 17335633--17335733 Score: 141
Period size: 45 Copynumber: 2.2 Consensus size: 45
17335623 ATGTGCCGAC
* *
17335633 TACCGTTACTATTACCGATTC-GACACTTTGTGTGTCCAAGACTGT
1 TACCGTTACTGTTACAGATTCAG-CACTTTGTGTGTCCAAGACTGT
** *
17335678 TACCGTTACTGTTACAGATTCAGCACTTTGTGTGTTGAATACTGT
1 TACCGTTACTGTTACAGATTCAGCACTTTGTGTGTCCAAGACTGT
17335723 TACCGTTACTG
1 TACCGTTACTG
17335734 CTACTGCTAC
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
45 49 0.98
46 1 0.02
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.38
Consensus pattern (45 bp):
TACCGTTACTGTTACAGATTCAGCACTTTGTGTGTCCAAGACTGT
Found at i:17335744 original size:18 final size:18
Alignment explanation
Indices: 17335717--17335751 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
17335707 GTGTGTTGAA
*
17335717 TACTGTTACCGTTACTGC
1 TACTGCTACCGTTACTGC
17335735 TACTGCTACCGTTACTG
1 TACTGCTACCGTTACTG
17335752 ATTACTGATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.29, G:0.17, T:0.37
Consensus pattern (18 bp):
TACTGCTACCGTTACTGC
Found at i:17338882 original size:13 final size:13
Alignment explanation
Indices: 17338864--17338891 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
17338854 CGTTCGGGTA
17338864 AATCCTTTTCTGC
1 AATCCTTTTCTGC
17338877 AATCCTTTTCTGC
1 AATCCTTTTCTGC
17338890 AA
1 AA
17338892 CACATGCAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.29, G:0.07, T:0.43
Consensus pattern (13 bp):
AATCCTTTTCTGC
Found at i:17342801 original size:22 final size:21
Alignment explanation
Indices: 17342761--17342801 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
17342751 TTCTTAACAC
*
17342761 AGGGGCACACACCCGTGTGGG
1 AGGGGCACACACCCATGTGGG
*
17342782 AGGGGCAACACGCCCATGTG
1 AGGGGC-ACACACCCATGTG
17342802 ACATTTCAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.22, C:0.29, G:0.39, T:0.10
Consensus pattern (21 bp):
AGGGGCACACACCCATGTGGG
Found at i:17344514 original size:40 final size:40
Alignment explanation
Indices: 17344459--17344596 Score: 199
Period size: 40 Copynumber: 3.5 Consensus size: 40
17344449 CGGATCACAA
17344459 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
17344499 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * **
17344539 CCGGGCTAGGTCCCGAAGGCAGTTGAACGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
17344579 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
17344597 TACTTGGTTT
Statistics
Matches: 89, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 16 0.18
40 73 0.82
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:17356184 original size:24 final size:24
Alignment explanation
Indices: 17356154--17356256 Score: 89
Period size: 24 Copynumber: 4.2 Consensus size: 24
17356144 TCCTGATTAA
*
17356154 TGGCTCTCCCGAGCTTCCCAATAT
1 TGGCTCTCCGGAGCTTCCCAATAT
** * *
17356178 TGGCTCTCTTGAACTTCCCGATAT
1 TGGCTCTCCGGAGCTTCCCAATAT
* ** *
17356202 ATGGCTATCCGGAGCTTCCCGTTAA
1 -TGGCTCTCCGGAGCTTCCCAATAT
* * *
17356227 TGGCTCTACGGAGCTACCCATTAT
1 TGGCTCTCCGGAGCTTCCCAATAT
17356251 TGGCTC
1 TGGCTC
17356257 GCATGAGCTT
Statistics
Matches: 63, Mismatches: 15, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
24 45 0.71
25 18 0.29
ACGTcount: A:0.17, C:0.31, G:0.20, T:0.31
Consensus pattern (24 bp):
TGGCTCTCCGGAGCTTCCCAATAT
Found at i:17356203 original size:26 final size:26
Alignment explanation
Indices: 17356126--17356207 Score: 66
Period size: 24 Copynumber: 3.3 Consensus size: 26
17356116 CTTCCTGTTG
*
17356126 ATTGGCTCT-TTGTAAGCTTCCTGAT-T
1 ATTGGCTCTCTTG-AA-CTTCCCGATAT
* ** *
17356152 AATGGCTCTCCCGAGCTTCCC-A-AT
1 ATTGGCTCTCTTGAACTTCCCGATAT
17356176 ATTGGCTCTCTTGAACTTCCCGATAT
1 ATTGGCTCTCTTGAACTTCCCGATAT
17356202 A-TGGCT
1 ATTGGCT
17356208 ATCCGGAGCT
Statistics
Matches: 43, Mismatches: 9, Indels: 9
0.70 0.15 0.15
Matches are distributed among these distances:
24 19 0.44
25 11 0.26
26 12 0.28
27 1 0.02
ACGTcount: A:0.18, C:0.27, G:0.18, T:0.37
Consensus pattern (26 bp):
ATTGGCTCTCTTGAACTTCCCGATAT
Found at i:17356219 original size:25 final size:25
Alignment explanation
Indices: 17356140--17356241 Score: 93
Period size: 24 Copynumber: 4.2 Consensus size: 25
17356130 GCTCTTTGTA
* *
17356140 AGCTTCCTGAT-TAATGGCTCTCCCG
1 AGCTTCCCGATAT-ATGGCTCTCCGG
* **
17356165 AGCTTCCCAATAT-TGGCTCTCTTG
1 AGCTTCCCGATATATGGCTCTCCGG
* *
17356189 AACTTCCCGATATATGGCTATCCGG
1 AGCTTCCCGATATATGGCTCTCCGG
* *
17356214 AGCTTCCCGTTA-ATGGCTCTACGG
1 AGCTTCCCGATATATGGCTCTCCGG
17356238 AGCT
1 AGCT
17356242 ACCCATTATT
Statistics
Matches: 62, Mismatches: 13, Indels: 5
0.77 0.16 0.06
Matches are distributed among these distances:
24 34 0.55
25 27 0.44
26 1 0.02
ACGTcount: A:0.19, C:0.29, G:0.21, T:0.31
Consensus pattern (25 bp):
AGCTTCCCGATATATGGCTCTCCGG
Found at i:17356231 original size:49 final size:50
Alignment explanation
Indices: 17356113--17356233 Score: 131
Period size: 49 Copynumber: 2.4 Consensus size: 50
17356103 GACTTTTCGT
* * *
17356113 GAGCTTCCTGTTGATTGGCTCTTTGTAAGCTTCCTGATTAATGGCTCTCCC
1 GAGCTTCCCGTT-ATTGGCTCTTTGTAAGCTTCCCGATTAATGGCTATCCC
** *
17356164 GAGCTTCCCAATATTGGCTCTCTTG-AA-CTTCCCGA-TATATGGCTATCCG
1 GAGCTTCCCGTTATTGGCTCT-TTGTAAGCTTCCCGATTA-ATGGCTATCCC
*
17356213 GAGCTTCCCGTTAATGGCTCT
1 GAGCTTCCCGTTATTGGCTCT
17356234 ACGGAGCTAC
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
48 2 0.03
49 34 0.58
50 11 0.19
51 12 0.20
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.36
Consensus pattern (50 bp):
GAGCTTCCCGTTATTGGCTCTTTGTAAGCTTCCCGATTAATGGCTATCCC
Found at i:17356264 original size:24 final size:24
Alignment explanation
Indices: 17356237--17356356 Score: 73
Period size: 25 Copynumber: 4.9 Consensus size: 24
17356227 TGGCTCTACG
*
17356237 GAGCTACCCATTATTGGCTCGCAT
1 GAGCTTCCCATTATTGGCTCGCAT
* **
17356261 GAGCTTCCTAATTA-TGGCTCTTAT
1 GAGCTTCC-CATTATTGGCTCGCAT
* *
17356285 GAGCTTCCCATTATATAG-TCCGGAT
1 GAGCTTCCCATTAT-TGGCT-CGCAT
* * * *
17356310 AAGCTTCCCGTTACATGGCTCACAT
1 GAGCTTCCCATTA-TTGGCTCGCAT
* *
17356335 GAACTTCCCGTTATATGGCTCG
1 GAGCTTCCCATTAT-TGGCTCG
17356357 AGAGAGTGCT
Statistics
Matches: 71, Mismatches: 18, Indels: 13
0.70 0.18 0.13
Matches are distributed among these distances:
23 4 0.06
24 24 0.34
25 42 0.59
26 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.19, T:0.33
Consensus pattern (24 bp):
GAGCTTCCCATTATTGGCTCGCAT
Found at i:17356662 original size:17 final size:17
Alignment explanation
Indices: 17356618--17356663 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 17
17356608 GAAATACATG
*
17356618 GAAATG-ATGGTAT-AT
1 GAAATGAATGATATAAT
*
17356633 GAAAT-ATTGATATAAT
1 GAAATGAATGATATAAT
17356649 GAAATGAATGATATA
1 GAAATGAATGATATA
17356664 TGTTTATGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
15 10 0.40
16 7 0.28
17 8 0.32
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.33
Consensus pattern (17 bp):
GAAATGAATGATATAAT
Found at i:17362342 original size:21 final size:22
Alignment explanation
Indices: 17362309--17362357 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
17362299 GCATTTTTTT
17362309 AAAAT-TAAATTAAA-A-ATAA
1 AAAATATAAATTAAATATATAA
*
17362328 AAAATATAATATTAAATATTTAA
1 AAAATATAA-ATTAAATATATAA
17362351 AAAATAT
1 AAAATAT
17362358 TTTTGACTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 5 0.20
20 3 0.12
21 6 0.24
22 1 0.04
23 10 0.40
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (22 bp):
AAAATATAAATTAAATATATAA
Found at i:17362650 original size:24 final size:25
Alignment explanation
Indices: 17362623--17362672 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
17362613 TAATTATATG
17362623 TTTTAAAATTTTAATAAAAA-ATTA
1 TTTTAAAATTTTAATAAAAATATTA
* * *
17362647 TTTTTAATTTTTTATAAAAATATTA
1 TTTTAAAATTTTAATAAAAATATTA
17362672 T
1 T
17362673 ATATATAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (25 bp):
TTTTAAAATTTTAATAAAAATATTA
Found at i:17362659 original size:25 final size:27
Alignment explanation
Indices: 17362631--17362686 Score: 73
Period size: 24 Copynumber: 2.2 Consensus size: 27
17362621 TGTTTTAAAA
* *
17362631 TTTTAATAAAAA-ATTAT-T-TTTAAT
1 TTTTTATAAAAATATTATATATATAAT
17362655 TTTTTATAAAAATATTATATATATAAT
1 TTTTTATAAAAATATTATATATATAAT
17362682 TTTTT
1 TTTTT
17362687 TTACATTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 11 0.41
25 5 0.19
26 1 0.04
27 10 0.37
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (27 bp):
TTTTTATAAAAATATTATATATATAAT
Found at i:17362712 original size:38 final size:37
Alignment explanation
Indices: 17362642--17362713 Score: 90
Period size: 38 Copynumber: 1.9 Consensus size: 37
17362632 TTTAATAAAA
* *
17362642 AATTATTTTTAATTTTTTATAAAAATATTATATATAT
1 AATTATTTTTAATTTTTAATAAAAATAATATATATAT
* * *
17362679 AATTTTTTTTACATTTTTAATCAATATAATATATA
1 AATTATTTTTA-ATTTTTAATAAAAATAATATATA
17362714 ATATTAAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
37 10 0.34
38 19 0.66
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (37 bp):
AATTATTTTTAATTTTTAATAAAAATAATATATATAT
Found at i:17367763 original size:26 final size:23
Alignment explanation
Indices: 17367718--17367764 Score: 67
Period size: 26 Copynumber: 1.9 Consensus size: 23
17367708 CTTATTTCAT
17367718 TAAATAAAAAATTAAAAATATAA
1 TAAATAAAAAATTAAAAATATAA
17367741 TAAATAAAATACATTTAAAAATAT
1 TAAATAAAA-A-A-TTAAAAATAT
17367765 TAAAACAAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 9 0.43
24 1 0.05
25 1 0.05
26 10 0.48
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (23 bp):
TAAATAAAAAATTAAAAATATAA
Found at i:17374376 original size:21 final size:21
Alignment explanation
Indices: 17374352--17374394 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
17374342 TCTCGAGGTA
*
17374352 GAGGTGAACGGCCTCATTGTG
1 GAGGTGAACGACCTCATTGTG
*
17374373 GAGGTGAACGACCTCGTTGTG
1 GAGGTGAACGACCTCATTGTG
17374394 G
1 G
17374395 TCTCCCCTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.19, C:0.19, G:0.40, T:0.23
Consensus pattern (21 bp):
GAGGTGAACGACCTCATTGTG
Found at i:17374864 original size:17 final size:18
Alignment explanation
Indices: 17374842--17374879 Score: 62
Period size: 16 Copynumber: 2.2 Consensus size: 18
17374832 AATTTTTTTT
17374842 AATTTTTTTTCAACTT-A
1 AATTTTTTTTCAACTTCA
17374859 AA-TTTTTTTCAACTTCA
1 AATTTTTTTTCAACTTCA
17374876 AATT
1 AATT
17374880 GTTGTTTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 13 0.68
17 5 0.26
18 1 0.05
ACGTcount: A:0.32, C:0.13, G:0.00, T:0.55
Consensus pattern (18 bp):
AATTTTTTTTCAACTTCA
Found at i:17374917 original size:13 final size:12
Alignment explanation
Indices: 17374897--17374948 Score: 56
Period size: 12 Copynumber: 4.5 Consensus size: 12
17374887 CTTTTTCGAA
17374897 TTTTTTTCACTT
1 TTTTTTTCACTT
*
17374909 TTGTTTTTCA-TA
1 TT-TTTTTCACTT
*
17374921 TTCTTTTCACTT
1 TTTTTTTCACTT
17374933 TTTTTTT--CTT
1 TTTTTTTCACTT
17374943 TTTTTT
1 TTTTTT
17374949 GATTTTTCTA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
10 9 0.26
11 6 0.18
12 12 0.35
13 7 0.21
ACGTcount: A:0.08, C:0.13, G:0.02, T:0.77
Consensus pattern (12 bp):
TTTTTTTCACTT
Found at i:17382046 original size:15 final size:15
Alignment explanation
Indices: 17382026--17382055 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
17382016 CATTTTATTT
*
17382026 ATATTAGGATAATTA
1 ATATTAAGATAATTA
17382041 ATATTAAGATAATTA
1 ATATTAAGATAATTA
17382056 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:17382099 original size:10 final size:10
Alignment explanation
Indices: 17382080--17382111 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
17382070 ATTTAGGATT
17382080 TTAT-TTTAA
1 TTATCTTTAA
17382089 TTATCTTTAA
1 TTATCTTTAA
17382099 TTATCTTTAA
1 TTATCTTTAA
17382109 TTA
1 TTA
17382112 AATGTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:17383624 original size:13 final size:13
Alignment explanation
Indices: 17383606--17383635 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
17383596 CCCTTTTTCC
17383606 CTAGCAGATTCAG
1 CTAGCAGATTCAG
17383619 CTAGCAGATTCAG
1 CTAGCAGATTCAG
17383632 CTAG
1 CTAG
17383636 TTCTCTACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.23
Consensus pattern (13 bp):
CTAGCAGATTCAG
Found at i:17386286 original size:64 final size:64
Alignment explanation
Indices: 17386218--17386348 Score: 253
Period size: 64 Copynumber: 2.0 Consensus size: 64
17386208 AATTACACTT
*
17386218 TTTTTTAGTGAAATCAATTTATTTAATAACAAAATCGAATATATTTTTATCGAATTTTTAAGGC
1 TTTTTTAGTAAAATCAATTTATTTAATAACAAAATCGAATATATTTTTATCGAATTTTTAAGGC
17386282 TTTTTTAGTAAAATCAATTTATTTAATAACAAAATCGAATATATTTTTATCGAATTTTTAAGGC
1 TTTTTTAGTAAAATCAATTTATTTAATAACAAAATCGAATATATTTTTATCGAATTTTTAAGGC
17386346 TTT
1 TTT
17386349 CCGAACTTAT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.37, C:0.08, G:0.08, T:0.47
Consensus pattern (64 bp):
TTTTTTAGTAAAATCAATTTATTTAATAACAAAATCGAATATATTTTTATCGAATTTTTAAGGC
Found at i:17390436 original size:21 final size:21
Alignment explanation
Indices: 17390403--17390442 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
17390393 AACTAAATAA
*
17390403 AAAACATTTGAAACATTGAGG
1 AAAACATTTGAAAAATTGAGG
17390424 AAAA-ATTTAGAAAAATTGA
1 AAAACATTT-GAAAAATTGA
17390443 ACTGCAGGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.55, C:0.05, G:0.15, T:0.25
Consensus pattern (21 bp):
AAAACATTTGAAAAATTGAGG
Found at i:17390617 original size:12 final size:12
Alignment explanation
Indices: 17390600--17390629 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
17390590 AGCCATACGC
17390600 CCGTGTGCTAAG
1 CCGTGTGCTAAG
*
17390612 CCGTGTGCTAGG
1 CCGTGTGCTAAG
17390624 CCGTGT
1 CCGTGT
17390630 AACTGCCTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.10, C:0.27, G:0.37, T:0.27
Consensus pattern (12 bp):
CCGTGTGCTAAG
Found at i:17391407 original size:41 final size:41
Alignment explanation
Indices: 17391342--17391591 Score: 216
Period size: 41 Copynumber: 6.1 Consensus size: 41
17391332 ACTTTACTCG
* * ** *
17391342 ATTCAAGGTTACCAGAGTGTAAACAAGGGCACGTATGTGCT
1 ATTCAAGGGTACCAAAGTACAAACAAGGGCACGTATGTGCA
* * * * *
17391383 ATTCAAGAGTACCGAAGTACAAAC-AGAGGTACATTTGTGCA
1 ATTCAAGGGTACCAAAGTACAAACAAG-GGCACGTATGTGCA
** *
17391424 ATTC-AGGGTACCAAAGTACAAACAAGGGCATTTATATGCA
1 ATTCAAGGGTACCAAAGTACAAACAAGGGCACGTATGTGCA
* * * *
17391464 ATTCATGGGTGCCAAAGTACAAACAAGGGCATGTATGTGAA
1 ATTCAAGGGTACCAAAGTACAAACAAGGGCACGTATGTGCA
* ** * * * *
17391505 ATTCAGGGGTAATAAAGTACAAACGATGGCACATATGTGTA
1 ATTCAAGGGTACCAAAGTACAAACAAGGGCACGTATGTGCA
* * * * *
17391546 ATTTAGGGGTACCGAAGTACAAACAGGGGCACGTATATGCA
1 ATTCAAGGGTACCAAAGTACAAACAAGGGCACGTATGTGCA
17391587 ATTCA
1 ATTCA
17391592 GGGAATGATT
Statistics
Matches: 164, Mismatches: 42, Indels: 6
0.77 0.20 0.03
Matches are distributed among these distances:
40 32 0.20
41 132 0.80
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (41 bp):
ATTCAAGGGTACCAAAGTACAAACAAGGGCACGTATGTGCA
Found at i:17394474 original size:34 final size:34
Alignment explanation
Indices: 17394434--17394666 Score: 162
Period size: 34 Copynumber: 6.9 Consensus size: 34
17394424 CAAATACATG
* *
17394434 TTAAGCAAGCTTATTGCTACTGTAATGATCTATT
1 TTAAGCATGATTATTGCTACTGTAATGATCTATT
*
17394468 TTAAGCATGATAATCT-CTA-TAGT-ATCGA-CTCATT
1 TTAAGCATGATTAT-TGCTACT-GTAAT-GATCT-ATT
* * *
17394502 ATAAGCATGATTATTGCTGCTTTAATGATCTATT
1 TTAAGCATGATTATTGCTACTGTAATGATCTATT
* *
17394536 TTAAGCATGATAATTGCTATTGT-ATCGA-CTCATT
1 TTAAGCATGATTATTGCTACTGTAAT-GATCT-ATT
* * * * *
17394570 ATAAGCATGTTTATTACTACTATAATGATCTTTT
1 TTAAGCATGATTATTGCTACTGTAATGATCTATT
* * * *
17394604 TTAAGCATAATAATTGTTACTGT-ATCAAT-T-TT
1 TTAAGCATGATTATTGCTACTGTAAT-GATCTATT
*
17394636 TGTAAGCATG-TTATTGCTACTGTATTGATCT
1 T-TAAGCATGATTATTGCTACTGTAATGATCT
17394667 GTTATAGCAT
Statistics
Matches: 151, Mismatches: 32, Indels: 33
0.70 0.15 0.15
Matches are distributed among these distances:
32 16 0.11
33 22 0.15
34 103 0.68
35 10 0.07
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (34 bp):
TTAAGCATGATTATTGCTACTGTAATGATCTATT
Found at i:17394518 original size:68 final size:68
Alignment explanation
Indices: 17394435--17394666 Score: 265
Period size: 68 Copynumber: 3.4 Consensus size: 68
17394425 AAATACATGT
* * *
17394435 TAAGCAAGCTTATTGCTACTGTAATGATCTATTTTAAGCATGATAATCT-CTATAGTATCGACTC
1 TAAGCATGATTATTGCTACTATAATGATCTATTTTAAGCATGATAAT-TGCTATAGTATCGACTC
17394499 ATTA
65 ATTA
* * *
17394503 TAAGCATGATTATTGCTGCTTTAATGATCTATTTTAAGCATGATAATTGCTATTGTATCGACTCA
1 TAAGCATGATTATTGCTACTATAATGATCTATTTTAAGCATGATAATTGCTATAGTATCGACTCA
17394568 TTA
66 TTA
* * * * * * *
17394571 TAAGCATGTTTATTACTACTATAATGATCTTTTTTAAGCATAATAATTGTTACT-GTATC-AATT
1 TAAGCATGATTATTGCTACTATAATGATCTATTTTAAGCATGATAATTGCTA-TAGTATCGACTC
* *
17394634 TTTG
65 ATTA
* *
17394638 TAAGCATG-TTATTGCTACTGTATTGATCT
1 TAAGCATGATTATTGCTACTATAATGATCT
17394667 GTTATAGCAT
Statistics
Matches: 143, Mismatches: 19, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
66 18 0.13
67 13 0.09
68 111 0.78
69 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (68 bp):
TAAGCATGATTATTGCTACTATAATGATCTATTTTAAGCATGATAATTGCTATAGTATCGACTCA
TTA
Found at i:17397349 original size:29 final size:29
Alignment explanation
Indices: 17397317--17397448 Score: 106
Period size: 29 Copynumber: 4.6 Consensus size: 29
17397307 GTCCATCCGG
*
17397317 CCCAATTCACGTTCATATGGCCCACTAGA
1 CCCAATTCACATTCATATGGCCCACTAGA
* * *
17397346 CCCAATT-ATATTCACATGGCCCACTAGG
1 CCCAATTCACATTCATATGGCCCACTAGA
* * ** *
17397374 CCCAAATCACATTTATATGGCCCTTTAGG
1 CCCAATTCACATTCATATGGCCCACTAGA
* * * * * *
17397403 CCCAAATCACATTTATGTGGCCTATTAGG
1 CCCAATTCACATTCATATGGCCCACTAGA
*
17397432 CCCAAATCACATT-ATAT
1 CCCAATTCACATTCATAT
17397449 TCATGCTCAT
Statistics
Matches: 88, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
28 26 0.30
29 62 0.70
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.28
Consensus pattern (29 bp):
CCCAATTCACATTCATATGGCCCACTAGA
Found at i:17397407 original size:57 final size:58
Alignment explanation
Indices: 17397315--17397448 Score: 137
Period size: 57 Copynumber: 2.3 Consensus size: 58
17397305 TGGTCCATCC
* * * * *
17397315 GGCCCAATTCACGTTCATATGGCCCACTAGACCC-AATTATATTCACATGGCCCACTA
1 GGCCCAAATCACATTTATATGGCCCACTAGACCCAAATCACATTCACATGGCCCACTA
** * * ** * *
17397372 GGCCCAAATCACATTTATATGGCCCTTTAGGCCCAAATCACATTTATGTGGCCTATTA
1 GGCCCAAATCACATTTATATGGCCCACTAGACCCAAATCACATTCACATGGCCCACTA
17397430 GGCCCAAATCACA-TTATAT
1 GGCCCAAATCACATTTATAT
17397449 TCATGCTCAT
Statistics
Matches: 63, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
57 34 0.54
58 29 0.46
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (58 bp):
GGCCCAAATCACATTTATATGGCCCACTAGACCCAAATCACATTCACATGGCCCACTA
Found at i:17398911 original size:7 final size:7
Alignment explanation
Indices: 17398899--17398924 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
17398889 ATTTATAAAA
17398899 CCCAAAG
1 CCCAAAG
17398906 CCCAAAG
1 CCCAAAG
17398913 CCCAAAG
1 CCCAAAG
17398920 CCCAA
1 CCCAA
17398925 TTCATCTAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.46, G:0.12, T:0.00
Consensus pattern (7 bp):
CCCAAAG
Found at i:17403277 original size:78 final size:78
Alignment explanation
Indices: 17403143--17403296 Score: 263
Period size: 78 Copynumber: 2.0 Consensus size: 78
17403133 CATCCAAATT
* *
17403143 TAAAGCTTTTCACATACATTCACATCGTCCCTAAAACGAGCCTACGAGGTCCAAAACATGCATTG
1 TAAAACTTTTCACATACATTCACATCGTCCCTAAAACGAGCCTACGAGGCCCAAAACATGCATTG
*
17403208 GAAGTAGTTCATG
66 GAAGCAGTTCATG
* *
17403221 TAAAACTTTTCTCATACATTCACATTGTCCCTAAAACGAGCCTACGAGGCCCAAAACATGCATTG
1 TAAAACTTTTCACATACATTCACATCGTCCCTAAAACGAGCCTACGAGGCCCAAAACATGCATTG
17403286 GAAGCAGTTCA
66 GAAGCAGTTCA
17403297 GGACTAAACC
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
78 71 1.00
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (78 bp):
TAAAACTTTTCACATACATTCACATCGTCCCTAAAACGAGCCTACGAGGCCCAAAACATGCATTG
GAAGCAGTTCATG
Found at i:17404614 original size:42 final size:42
Alignment explanation
Indices: 17404510--17404700 Score: 267
Period size: 42 Copynumber: 4.5 Consensus size: 42
17404500 CCAATGTCAT
* *
17404510 ATCCCAGATATGGTCTTACATGTAATCTCATATCGATGCCA-
1 ATCCCAGATATGGTCTTACACGAAATCTCATATCGATGCCAC
*
17404551 ATAACCCAGCTATGGTCTTACACGAAATCTCATATCGATGCCAC
1 AT--CCCAGATATGGTCTTACACGAAATCTCATATCGATGCCAC
* *
17404595 ATCCCAGATGTGGTCTTACACAAAATCTCATATCGATGCCAC
1 ATCCCAGATATGGTCTTACACGAAATCTCATATCGATGCCAC
* * * * *
17404637 ATCCCAGGTGTGGTCATACACAAAATCTCATATCGATGCCAT
1 ATCCCAGATATGGTCTTACACGAAATCTCATATCGATGCCAC
17404679 ATCCCAGATATGGTCTTACACG
1 ATCCCAGATATGGTCTTACACG
17404701 TAGACTTAGT
Statistics
Matches: 134, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
41 2 0.01
42 94 0.70
43 36 0.27
44 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (42 bp):
ATCCCAGATATGGTCTTACACGAAATCTCATATCGATGCCAC
Found at i:17409068 original size:30 final size:30
Alignment explanation
Indices: 17409032--17409090 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
17409022 TTTACAAGCC
* * *
17409032 TAGGGGCTAAGTTATAATTATGTGAAAGTT
1 TAGGGGCAAAATTATAATTATGTCAAAGTT
*
17409062 TAGGGGCAAAATTATAATTTTGTCAAAGT
1 TAGGGGCAAAATTATAATTATGTCAAAGT
17409091 ATGATTTATG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.36, C:0.05, G:0.24, T:0.36
Consensus pattern (30 bp):
TAGGGGCAAAATTATAATTATGTCAAAGTT
Found at i:17414631 original size:49 final size:49
Alignment explanation
Indices: 17414505--17414737 Score: 182
Period size: 49 Copynumber: 4.9 Consensus size: 49
17414495 CCACATTCTG
* * *
17414505 AGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGAC-T---T-GACA
1 AGAGCCAGTGTAAGACC-TGTCTGGGACATGGCATCGACATCGATAGATA
* * * *
17414550 TGTGTCAGTGTGAGA-CTAGTCTGGGACATGGCATCGACATCGATAGATA
1 AGAGCCAGTGTAAGACCT-GTCTGGGACATGGCATCGACATCGATAGATA
* * * * *
17414599 AGAGCCAATGTAAGACCTGTCTAGGACATGGCATCGGCCTCGATATATGA
1 AGAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGAT-A
* *
17414649 A-A-CTCAGTGTAAGACCTGTCTGGGACATGGCATCGACTTAGAT-G-TA
1 AGAGC-CAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATA
* * *
17414695 TGAGCCAGTGTAAGACCATGT-TCGGAACATGGCATCGGCATCG
1 AGAGCCAGTGTAAGACC-TGTCT-GGGACATGGCATCGACATCG
17414738 TACCCTATGT
Statistics
Matches: 148, Mismatches: 27, Indels: 23
0.75 0.14 0.12
Matches are distributed among these distances:
43 1 0.01
44 20 0.14
45 11 0.07
46 1 0.01
47 15 0.10
48 22 0.15
49 74 0.50
50 4 0.03
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (49 bp):
AGAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATA
Found at i:17414670 original size:98 final size:97
Alignment explanation
Indices: 17414554--17414733 Score: 249
Period size: 98 Copynumber: 1.8 Consensus size: 97
17414544 TTGACATGTG
* *
17414554 TCAGTGTGAGACTAGTCTGGGACATGGCATCGACATCGATAGATAAGAGCCAATGTAAGACC-TG
1 TCAGTGTAAGACTAGTCTGGGACATGGCATCGACATAGAT-G-TAAGAGCCAATGTAAGACCATG
17414618 TCTAGG-ACATGGCATCGGCCTCGATATATGAAAC
64 T-TAGGAACATGGCATCGGCCTCGATATATGAAAC
* * *
17414652 TCAGTGTAAGACCT-GTCTGGGACATGGCATCGACTTAGATGTATGAGCCAGTGTAAGACCATGT
1 TCAGTGTAAGA-CTAGTCTGGGACATGGCATCGACATAGATGTAAGAGCCAATGTAAGACCATGT
*
17414716 TCGGAACATGGCATCGGC
65 TAGGAACATGGCATCGGC
17414734 ATCGTACCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
96 20 0.27
97 17 0.23
98 34 0.47
99 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (97 bp):
TCAGTGTAAGACTAGTCTGGGACATGGCATCGACATAGATGTAAGAGCCAATGTAAGACCATGTT
AGGAACATGGCATCGGCCTCGATATATGAAAC
Found at i:17415125 original size:28 final size:28
Alignment explanation
Indices: 17415093--17415148 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
17415083 TACCAATGTG
17415093 GTGAAAATGAATCAATAAGAGGTGATAA
1 GTGAAAATGAATCAATAAGAGGTGATAA
*
17415121 GTGAAAATGAATTAATAAGAGGTGATAA
1 GTGAAAATGAATCAATAAGAGGTGATAA
17415149 ACTTAGTATC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.50, C:0.02, G:0.25, T:0.23
Consensus pattern (28 bp):
GTGAAAATGAATCAATAAGAGGTGATAA
Found at i:17415383 original size:30 final size:30
Alignment explanation
Indices: 17415348--17415408 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
17415338 TTTTGTGAGA
17415348 CAGAGTCAGAATGATTTTGAAATCCCCTGT
1 CAGAGTCAGAATGATTTTGAAATCCCCTGT
17415378 CAGAGTCAGAATGATTTTGAAATCCCCTGT
1 CAGAGTCAGAATGATTTTGAAATCCCCTGT
17415408 C
1 C
17415409 TCGATTTGGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.30
Consensus pattern (30 bp):
CAGAGTCAGAATGATTTTGAAATCCCCTGT
Found at i:17420075 original size:48 final size:47
Alignment explanation
Indices: 17420020--17420204 Score: 237
Period size: 48 Copynumber: 3.9 Consensus size: 47
17420010 ATCGATATTT
*
17420020 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGTATCAATGTA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATGTA
* *
17420067 CGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATCTA
1 -GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATGTA
* * * *
17420115 TGATTCCACGTAAAACCATGTCTAGGACATGGCATTGGCATCGATATGT-
1 -GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC-A-ATGTA
* * *
17420164 GATCCCATGTAAGACCATATTTGGGATATGGCATTGGCATC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
17420205 CTACCATGTG
Statistics
Matches: 118, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
48 115 0.97
50 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (47 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATGTA
Found at i:17420172 original size:96 final size:95
Alignment explanation
Indices: 17420008--17420204 Score: 270
Period size: 96 Copynumber: 2.1 Consensus size: 95
17419998 TAGGCTATCA
* * * * *
17420008 GCATCGATATTTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGTATCAATGTACGATCC
1 GCATCGATATATGATCCCACGTAAAACCATGTCTAGGACATGGCATTGGCATCAATGTA-GATCC
*
17420073 CATGTAAGACCATGTCTGGGACATGGCATTG
65 CATGTAAGACCATATCTGGGACATGGCATTG
* *
17420104 GCATCGATCTATGATTCCACGTAAAACCATGTCTAGGACATGGCATTGGCATCGATATGT-GATC
1 GCATCGATATATGATCCCACGTAAAACCATGTCTAGGACATGGCATTGGCATC-A-ATGTAGATC
* *
17420168 CCATGTAAGACCATATTTGGGATATGGCATTG
64 CCATGTAAGACCATATCTGGGACATGGCATTG
17420200 GCATC
1 GCATC
17420205 CTACCATGTG
Statistics
Matches: 89, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
96 84 0.94
97 1 0.01
98 4 0.04
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (95 bp):
GCATCGATATATGATCCCACGTAAAACCATGTCTAGGACATGGCATTGGCATCAATGTAGATCCC
ATGTAAGACCATATCTGGGACATGGCATTG
Found at i:17421274 original size:12 final size:12
Alignment explanation
Indices: 17421257--17421281 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
17421247 TGTCTCCCCT
17421257 GCACCCTAATTA
1 GCACCCTAATTA
17421269 GCACCCTAATTA
1 GCACCCTAATTA
17421281 G
1 G
17421282 GTAAAACAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.32, G:0.12, T:0.24
Consensus pattern (12 bp):
GCACCCTAATTA
Found at i:17424117 original size:16 final size:15
Alignment explanation
Indices: 17424098--17424150 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 15
17424088 TTTCTAAAAA
17424098 TAATATTATTTTAATT
1 TAATATT-TTTTAATT
* *
17424114 TAATATTTATCTAA-C
1 TAATATTT-TTTAATT
17424129 TAATATTTTATTAATT
1 TAATATTTT-TTAATT
17424145 TAATAT
1 TAATAT
17424151 CAATAGGAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
14 1 0.03
15 12 0.40
16 17 0.57
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.57
Consensus pattern (15 bp):
TAATATTTTTTAATT
Found at i:17424133 original size:31 final size:29
Alignment explanation
Indices: 17424097--17424212 Score: 96
Period size: 31 Copynumber: 3.8 Consensus size: 29
17424087 TTTTCTAAAA
17424097 ATAATATTATT-TTAATTTAATATTTATCT
1 ATAATATT-TTATTAATTTAATATTTATCT
* *
17424126 AACTAATATTTTATTAATTTAATA-TCA-AT
1 -A-TAATATTTTATTAATTTAATATTTATCT
*
17424155 AGGAGATATTAATT-TTAATTTAATATTTATCTT
1 A-TA-ATATT--TTATTAATTTAATATTTATC-T
17424188 GATAATATTTTATTAATTTAATATT
1 -ATAATATTTTATTAATTTAATATT
17424213 AATGTGATTA
Statistics
Matches: 69, Mismatches: 7, Indels: 19
0.73 0.07 0.20
Matches are distributed among these distances:
28 2 0.03
29 6 0.09
30 18 0.26
31 35 0.51
32 5 0.07
33 2 0.03
34 1 0.01
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.53
Consensus pattern (29 bp):
ATAATATTTTATTAATTTAATATTTATCT
Found at i:17429551 original size:27 final size:27
Alignment explanation
Indices: 17429513--17429567 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
17429503 ATCAACATGA
17429513 TAATAACAATTCAAAATAATTCTTTCT
1 TAATAACAATTCAAAATAATTCTTTCT
17429540 TAATAACAATTCAAAATAATTCTTTCT
1 TAATAACAATTCAAAATAATTCTTTCT
17429567 T
1 T
17429568 CTTGTTGTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.42
Consensus pattern (27 bp):
TAATAACAATTCAAAATAATTCTTTCT
Found at i:17450820 original size:46 final size:46
Alignment explanation
Indices: 17450668--17450834 Score: 160
Period size: 46 Copynumber: 3.6 Consensus size: 46
17450658 GGTTCTCAGC
* ** *
17450668 TTTTGCATTTCTTGTGGACTGGTGAATACAGATTTAGGTT-CCCAT
1 TTTTGCATTTGTTGCAGACTGGTGAATACGGATTTAGGTTCCCCAT
* * * *
17450713 TTCTTGCATTTGTTGTAGATTGGTGAATACGGAATCAGGTT-CCCAGT
1 TT-TTGCATTTGTTGCAGACTGGTGAATACGGATTTAGGTTCCCCA-T
** * *
17450760 TCTTT-CATACGTTGCGGACTGGTGAATACGGATTTAGGTTCCCCCT
1 T-TTTGCATTTGTTGCAGACTGGTGAATACGGATTTAGGTTCCCCAT
* *
17450806 TTTTGCATTTGTTGCAAACTGGAGAATAC
1 TTTTGCATTTGTTGCAGACTGGTGAATAC
17450835 AGAATAATTA
Statistics
Matches: 98, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
45 5 0.05
46 85 0.87
47 7 0.07
48 1 0.01
ACGTcount: A:0.21, C:0.17, G:0.23, T:0.38
Consensus pattern (46 bp):
TTTTGCATTTGTTGCAGACTGGTGAATACGGATTTAGGTTCCCCAT
Found at i:17455380 original size:46 final size:45
Alignment explanation
Indices: 17455287--17455546 Score: 269
Period size: 46 Copynumber: 5.6 Consensus size: 45
17455277 TATCTGTGTT
* *
17455287 GATGCCATGTCCCAAACATGGTCTTACACTGGC--ACCTCTCGTAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCG-AGCC
*
17455333 GATGCATGTCCCAGACATGTCTTACACTGGCTTAGATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGA-GCC
*
17455379 GAAGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGA-GCC
* * * * * *
17455425 AAAGCATGTCTCAGACATGTCTTACACTAGCACT-CATCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-TTACATCTCGA-GCC
* *
17455471 GATGCCATATCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-CTCG-AGCC
17455519 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
17455547 AGCTCACACA
Statistics
Matches: 185, Mismatches: 20, Indels: 18
0.83 0.09 0.08
Matches are distributed among these distances:
44 13 0.07
45 14 0.08
46 107 0.58
47 26 0.14
48 23 0.12
49 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGCC
Found at i:17455498 original size:140 final size:137
Alignment explanation
Indices: 17455292--17455546 Score: 331
Period size: 140 Copynumber: 1.8 Consensus size: 137
17455282 GTGTTGATGC
* * *
17455292 CATGTCCCAAACATGGTCTTACACTGGCACCTCTCGTAGCCGATGCATGTCCCAGACATGTCTTA
1 CATGTCCCAAACATGGTCTTACACTAGCACCTCTCATAGCCGATGCATATCCCAGACATGTCTTA
* *
17455357 CACTGGCT-T-A-GATCTCGAGGCCGAAGCATGTCCCAGACATGTCTTACACTGGCTTACATCTC
66 CACTGGCTCTCATAATGT--A-GCCGAAGCATGTCCCAGACATGTCTTACACTGGCTTACATCTC
17455419 GAGGCCAAAG
128 GAGGCCAAAG
* *
17455429 CATGTCTCAGACAT-GTCTTACACTAGCACTCATCTCA-ATGCCGATGCCATATCCCAGACATGG
1 CATGTCCCAAACATGGTCTTACACTAGCAC-C-TCTCATA-GCCGATG-CATATCCCAGACAT-G
*
17455492 TCTTACACTGGCTCTCATAATGTAGCCGATGCATGTCCCAGACATGTCTTACACT
61 TCTTACACTGGCTCTCATAATGTAGCCGAAGCATGTCCCAGACATGTCTTACACT
17455547 AGCTCACACA
Statistics
Matches: 102, Mismatches: 8, Indels: 13
0.83 0.07 0.11
Matches are distributed among these distances:
136 14 0.14
137 14 0.14
138 11 0.11
139 13 0.13
140 44 0.43
141 2 0.02
142 1 0.01
143 3 0.03
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.26
Consensus pattern (137 bp):
CATGTCCCAAACATGGTCTTACACTAGCACCTCTCATAGCCGATGCATATCCCAGACATGTCTTA
CACTGGCTCTCATAATGTAGCCGAAGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAG
GCCAAAG
Found at i:17455535 original size:94 final size:92
Alignment explanation
Indices: 17455287--17455549 Score: 295
Period size: 94 Copynumber: 2.8 Consensus size: 92
17455277 TATCTGTGTT
* * *
17455287 GATGCCATGTCCCAAACATGGTCTTACACTGGCACCTC-TCGTAGCCGATGCATGTCCCAGACAT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTCATTGTAGCCGATGCATGTCCCAGACAT
* * * *
17455351 GTCTTACACTGGCTTAGATCTCGAGGCC
65 GTCTTACACTAGCCTACATCTCAAGGCC
* * * *
17455379 GAAG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTCG-AGGCCAAAGCATGTCTCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CAT-T-GTA-GCCGATGCATGTCCCAGA
*
17455440 CATGTCTTACACTAGCACT-CATCTCAATGCC
62 CATGTCTTACACTAGC-CTACATCTCAAGGCC
*
17455471 GATGCCATATCCCAGACATGGTCTTACACTGGCTCTCATAATGTAGCCGATGCATGTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT--TGTAGCCGATGCATGTCCCAGACA
17455536 TGTCTTACACTAGC
64 TGTCTTACACTAGC
17455550 TCACACAAGT
Statistics
Matches: 142, Mismatches: 18, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
88 1 0.01
89 1 0.01
90 14 0.10
91 14 0.10
92 46 0.32
93 14 0.10
94 49 0.35
95 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (92 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATTGTAGCCGATGCATGTCCCAGACATG
TCTTACACTAGCCTACATCTCAAGGCC
Done.