Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 59 of 362
Found at i:17926109 original size:49 final size:49
Alignment explanation
Indices: 17926037--17926136 Score: 200
Period size: 49 Copynumber: 2.0 Consensus size: 49
17926027 CATATAATGC
17926037 ATACGGCTCTGGTTGCTAGTAACTCGTACTAACATCATTCGTTTAAAGT
1 ATACGGCTCTGGTTGCTAGTAACTCGTACTAACATCATTCGTTTAAAGT
17926086 ATACGGCTCTGGTTGCTAGTAACTCGTACTAACATCATTCGTTTAAAGT
1 ATACGGCTCTGGTTGCTAGTAACTCGTACTAACATCATTCGTTTAAAGT
17926135 AT
1 AT
17926137 TCCAATAAGT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (49 bp):
ATACGGCTCTGGTTGCTAGTAACTCGTACTAACATCATTCGTTTAAAGT
Found at i:17936401 original size:18 final size:18
Alignment explanation
Indices: 17936378--17936456 Score: 131
Period size: 18 Copynumber: 4.4 Consensus size: 18
17936368 CGTTCCCAAG
* *
17936378 CCACACGGGAGTGTGTGA
1 CCACACGGGCGTGTGTCA
17936396 CCACACGGGCGTGTGTCA
1 CCACACGGGCGTGTGTCA
17936414 CCACACGGGCGTGTGTCA
1 CCACACGGGCGTGTGTCA
*
17936432 GCACACGGGCGTGTGTCA
1 CCACACGGGCGTGTGTCA
17936450 CCACACG
1 CCACACG
17936457 ACCTACCTAT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 57 1.00
ACGTcount: A:0.19, C:0.32, G:0.34, T:0.15
Consensus pattern (18 bp):
CCACACGGGCGTGTGTCA
Found at i:17940665 original size:23 final size:23
Alignment explanation
Indices: 17940639--17940689 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
17940629 TATCACATAA
17940639 TAAA-CACATAATTCAAACCAACT
1 TAAATCAC-TAATTCAAACCAACT
**
17940662 TAAATGGCTAATTCAAACCAACT
1 TAAATCACTAATTCAAACCAACT
17940685 TAAAT
1 TAAAT
17940690 GGCCAAATAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 24 0.96
24 1 0.04
ACGTcount: A:0.49, C:0.22, G:0.04, T:0.25
Consensus pattern (23 bp):
TAAATCACTAATTCAAACCAACT
Found at i:17940690 original size:23 final size:23
Alignment explanation
Indices: 17940647--17940692 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
17940637 AATAAACACA
17940647 TAATTCAAACCAACTTAAATGGC
1 TAATTCAAACCAACTTAAATGGC
17940670 TAATTCAAACCAACTTAAATGGC
1 TAATTCAAACCAACTTAAATGGC
17940693 CAAATACATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.22, G:0.09, T:0.26
Consensus pattern (23 bp):
TAATTCAAACCAACTTAAATGGC
Found at i:17943961 original size:30 final size:30
Alignment explanation
Indices: 17943927--17943987 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
17943917 ATTGGCTGAA
17943927 TCGTGTCGTCGTTTTTACATTCCAGGTAAG
1 TCGTGTCGTCGTTTTTACATTCCAGGTAAG
17943957 TCGTGTCGTCGTTTTTACATTCCAGGTAAG
1 TCGTGTCGTCGTTTTTACATTCCAGGTAAG
17943987 T
1 T
17943988 TTGTATATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.16, C:0.20, G:0.23, T:0.41
Consensus pattern (30 bp):
TCGTGTCGTCGTTTTTACATTCCAGGTAAG
Found at i:17957645 original size:96 final size:96
Alignment explanation
Indices: 17957350--17957636 Score: 349
Period size: 96 Copynumber: 3.0 Consensus size: 96
17957340 ATGACATGTG
* * * * * ** *
17957350 AGTATTGAGATCCCGTATAAGACCATACCTGGGATATGGCATTGGCATTGAGATGAGATTTCGTG
1 AGTA-TGAGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGATCCCGTA
* * * * *
17957415 TAAGACCATATCTGGGATATGGTATTGGCATT
65 TAAGACCATGTCTGGGACATGGCATCGGCATC
** * * * *
17957447 AGTATGAGATCTTATGTAAGACCATATCTAGGATATGGCATCGACATCGATAAGAGATCCCGTAT
1 AGTATGAGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGATCCCGTAT
* *
17957512 AAGACCACGTTTGGGACATGGCATCGGCATC
66 AAGACCATGTCTGGGACATGGCATCGGCATC
* * *
17957543 AGTATGATATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCAATATGAGGTCCCGTAT
1 AGTATGAGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGATCCCGTAT
17957608 AAGACCATGTCTGGGACATGGCATCGGCA
66 AAGACCATGTCTGGGACATGGCATCGGCA
17957637 CCGTTATGAG
Statistics
Matches: 158, Mismatches: 32, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
96 154 0.97
97 4 0.03
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (96 bp):
AGTATGAGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGATCCCGTAT
AAGACCATGTCTGGGACATGGCATCGGCATC
Found at i:17957659 original size:48 final size:47
Alignment explanation
Indices: 17957355--17957647 Score: 262
Period size: 48 Copynumber: 6.1 Consensus size: 47
17957345 ATGTGAGTAT
* * * * *
17957355 TGAGATCCCGTATAAGACCATACCTGGGATATGGCATTGGCATTGAGA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGCATCG-TA
** * * *
17957403 TGAGATTTCGTGTAAGACCATATCTGGGATATGGTATTGGCATTAGTA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGCA-TCGTA
*** * *
17957451 TGAGATCTTATGTAAGACCATATCTAGGATATGGCATCGACATCGATA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGCATCG-TA
* * ** * *
17957499 AGAGATCCCGTATAAGACCACGTTTGGGACATGGCATCGGCATCAGTA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGCATC-GTA
* * * *
17957547 TGATATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCAATA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGCATC-GTA
* * * * *
17957595 TGAGGTCCCGTATAAGACCATGTCTGGGACATGGCATCGGCACCGTTA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGCATCG-TA
17957643 TGAGA
1 TGAGA
17957648 CTTCGTGTAA
Statistics
Matches: 195, Mismatches: 46, Indels: 8
0.78 0.18 0.03
Matches are distributed among these distances:
47 2 0.01
48 190 0.97
49 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (47 bp):
TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGGCATCGTA
Found at i:17957670 original size:96 final size:96
Alignment explanation
Indices: 17957367--17957729 Score: 328
Period size: 96 Copynumber: 3.8 Consensus size: 96
17957357 AGATCCCGTA
* ** * ** * **
17957367 TAAGACCATACCTGGGATATGGCATTGGCATTGAGATGAGATTTCGTGTAAGACCATATCTGGGA
1 TAAGACCATATCTGGGATATGGCATTGGCATCAATATGAGATCCCGTATAAGACCACGTCTGGGA
* * * *
17957432 TATGGTATTGGCATTAGTATGAGATCTT-ATG
66 CATGGCATCGGCATCAGTATGAGA-CTTCATG
* * * * * *
17957463 TAAGACCATATCTAGGATATGGCATCGACATCGATAAGAGATCCCGTATAAGACCACGTTTGGGA
1 TAAGACCATATCTGGGATATGGCATTGGCATCAATATGAGATCCCGTATAAGACCACGTCTGGGA
* *
17957528 CATGGCATCGGCATCAGTATGATA-TCCCATG
66 CATGGCATCGGCATCAGTATGAGACT-TCATG
* *
17957559 TAAGACCATATCTGGGATATGGCATTGGCATCAATATGAGGTCCCGTATAAGACCATGTCTGGGA
1 TAAGACCATATCTGGGATATGGCATTGGCATCAATATGAGATCCCGTATAAGACCACGTCTGGGA
* *
17957624 CATGGCATCGGCA-CCGTTATGAGACTTCGTG
66 CATGGCATCGGCATCAG-TATGAGACTTCATG
* * * * * * * *
17957655 TAAGATCGTAGCTGGG--CT---ATTGGCATCAATGTGTGATCCCATATAAGACCACGTTTGGGA
1 TAAGACCATATCTGGGATATGGCATTGGCATCAATATGAGATCCCGTATAAGACCACGTCTGGGA
* *
17957715 CATGGCTTTGGCATC
66 CATGGCATCGGCATC
17957730 CTATTCTCTG
Statistics
Matches: 219, Mismatches: 43, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
91 47 0.21
92 1 0.00
94 2 0.01
95 2 0.01
96 166 0.76
97 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (96 bp):
TAAGACCATATCTGGGATATGGCATTGGCATCAATATGAGATCCCGTATAAGACCACGTCTGGGA
CATGGCATCGGCATCAGTATGAGACTTCATG
Found at i:17961035 original size:46 final size:46
Alignment explanation
Indices: 17960970--17961058 Score: 178
Period size: 46 Copynumber: 1.9 Consensus size: 46
17960960 TTGAGTTATG
17960970 TTTTTTACTTAATTATTTGTGAATTCCCTCCTCCTCAACTGTTCTT
1 TTTTTTACTTAATTATTTGTGAATTCCCTCCTCCTCAACTGTTCTT
17961016 TTTTTTACTTAATTATTTGTGAATTCCCTCCTCCTCAACTGTT
1 TTTTTTACTTAATTATTTGTGAATTCCCTCCTCCTCAACTGTT
17961059 TCAATGATTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.18, C:0.24, G:0.07, T:0.52
Consensus pattern (46 bp):
TTTTTTACTTAATTATTTGTGAATTCCCTCCTCCTCAACTGTTCTT
Found at i:17966462 original size:26 final size:27
Alignment explanation
Indices: 17966421--17966478 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 27
17966411 AACTTAGCCA
* * *
17966421 TTTTTTATTTATATTTTAATATTTTTG
1 TTTTTAATTTATATTTTAACATTTTAG
*
17966448 TTTTTAATTTA-ATTTTTACATTTTAG
1 TTTTTAATTTATATTTTAACATTTTAG
17966474 TTTTT
1 TTTTT
17966479 CTTTTATTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 17 0.63
27 10 0.37
ACGTcount: A:0.22, C:0.02, G:0.03, T:0.72
Consensus pattern (27 bp):
TTTTTAATTTATATTTTAACATTTTAG
Found at i:17969371 original size:27 final size:26
Alignment explanation
Indices: 17969278--17969379 Score: 96
Period size: 26 Copynumber: 3.8 Consensus size: 26
17969268 CAGAAGCAGT
* * * *
17969278 TTGGGCCTGAGTCCATTACAGTAATAG
1 TTGGGCCT-AGCCCATAATAGTAACAG
* * **
17969305 TTGGGCCTAGCCCAAAACAGTGTCAG
1 TTGGGCCTAGCCCATAATAGTAACAG
* *
17969331 ATGGGCCTAGCCCATATTAGTAACAG
1 TTGGGCCTAGCCCATAATAGTAACAG
17969357 TTGGGCCTTAGCCCATAATAGTA
1 TTGGGCC-TAGCCCATAATAGTA
17969380 TCAACATCAG
Statistics
Matches: 60, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
26 38 0.63
27 22 0.37
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
TTGGGCCTAGCCCATAATAGTAACAG
Found at i:17969626 original size:20 final size:22
Alignment explanation
Indices: 17969601--17969650 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
17969591 TGCCAGGAAT
*
17969601 AGTAAC-GCAA-CAGGGCTGCC
1 AGTAACAGCAAGCAAGGCTGCC
*
17969621 AGTAACAGTAAGCAAGGCTGCC
1 AGTAACAGCAAGCAAGGCTGCC
17969643 AGTAACAG
1 AGTAACAG
17969651 AATGGCTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 6 0.23
21 3 0.12
22 17 0.65
ACGTcount: A:0.36, C:0.24, G:0.28, T:0.12
Consensus pattern (22 bp):
AGTAACAGCAAGCAAGGCTGCC
Found at i:17969739 original size:32 final size:32
Alignment explanation
Indices: 17969698--17969776 Score: 95
Period size: 32 Copynumber: 2.5 Consensus size: 32
17969688 TAAGCAGGAT
17969698 GGCACAAAGCCATCAGTAGCTGTAATATAATC
1 GGCACAAAGCCATCAGTAGCTGTAATATAATC
** * *
17969730 GGCACAAAGCCATTGGTAGCTGTAGTATGATC
1 GGCACAAAGCCATCAGTAGCTGTAATATAATC
* * *
17969762 GACACAGAGTCATCA
1 GGCACAAAGCCATCA
17969777 ATAAATATGA
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.22
Consensus pattern (32 bp):
GGCACAAAGCCATCAGTAGCTGTAATATAATC
Found at i:17970255 original size:26 final size:27
Alignment explanation
Indices: 17970226--17970286 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 27
17970216 CAAAACAATC
* * *
17970226 ATTTTACCCTATAAGTGTA-TTTGGTA
1 ATTTTACACTACAAGAGTATTTTGGTA
17970252 ATTTTACACTACAAGAGTATTTTGGTA
1 ATTTTACACTACAAGAGTATTTTGGTA
17970279 ATTTTACA
1 ATTTTACA
17970287 AACTGAGGTC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
26 16 0.52
27 15 0.48
ACGTcount: A:0.31, C:0.11, G:0.13, T:0.44
Consensus pattern (27 bp):
ATTTTACACTACAAGAGTATTTTGGTA
Found at i:17973791 original size:9 final size:9
Alignment explanation
Indices: 17973763--17973846 Score: 57
Period size: 9 Copynumber: 9.3 Consensus size: 9
17973753 CATTTCCTTA
17973763 TTATTATTT
1 TTATTATTT
*
17973772 TT-TTATAT
1 TTATTATTT
17973780 TTATTATTT
1 TTATTATTT
*
17973789 TTAGTT-GTT
1 TTA-TTATTT
*
17973798 TTATTATTA
1 TTATTATTT
**
17973807 TTATTAGAT
1 TTATTATTT
17973816 TTAGGTTA-TT
1 TTA--TTATTT
*
17973826 ATATTATTT
1 TTATTATTT
*
17973835 TTATTAGTT
1 TTATTATTT
17973844 TTA
1 TTA
17973847 GTGATATTAT
Statistics
Matches: 57, Mismatches: 12, Indels: 12
0.70 0.15 0.15
Matches are distributed among these distances:
8 12 0.21
9 37 0.65
10 5 0.09
11 3 0.05
ACGTcount: A:0.25, C:0.00, G:0.07, T:0.68
Consensus pattern (9 bp):
TTATTATTT
Found at i:17973831 original size:28 final size:29
Alignment explanation
Indices: 17973799--17973856 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 29
17973789 TTAGTTGTTT
*
17973799 TATTATTATTATTAGATTTAG-GTTATTA
1 TATTATTATTATTAGATTTAGTGATATTA
* *
17973827 TATTATTTTTATTAGTTTTAGTGATATTA
1 TATTATTATTATTAGATTTAGTGATATTA
17973856 T
1 T
17973857 TATTCATATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 19 0.73
29 7 0.27
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.60
Consensus pattern (29 bp):
TATTATTATTATTAGATTTAGTGATATTA
Found at i:17976097 original size:16 final size:16
Alignment explanation
Indices: 17976072--17976102 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
17976062 ACCCAAGGGT
17976072 GAAGGCAGAAAATCGC
1 GAAGGCAGAAAATCGC
*
17976088 GAAGGTAGAAAATCG
1 GAAGGCAGAAAATCG
17976103 GTTTAGGAGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.13, G:0.32, T:0.10
Consensus pattern (16 bp):
GAAGGCAGAAAATCGC
Found at i:17979296 original size:41 final size:43
Alignment explanation
Indices: 17979198--17979356 Score: 146
Period size: 43 Copynumber: 3.8 Consensus size: 43
17979188 CAATTCCATA
* * * *
17979198 TCCCAGATATGGTCTTACATGTTATCACATATCGATGTCATTG
1 TCCCAGACATGGTCTTACATGTAATCACATATCGATGCCAATG
* * * *
17979241 TCCCAGATAGGGTCTTACATG-AATTATATAT-GATGCCAATG
1 TCCCAGACATGGTCTTACATGTAATCACATATCGATGCCAATG
* * ** *
17979282 TCCCAGGCATGGTCTTACACGTTTTCTCACT-TCGATGCCAATG
1 TCCCAGACATGGTCTTACATGTAATCACA-TATCGATGCCAATG
* *
17979325 TCCTAGACATGGTCTTACACG-AATCACATATC
1 TCCCAGACATGGTCTTACATGTAATCACATATC
17979357 AAAAGTCCTA
Statistics
Matches: 92, Mismatches: 20, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
41 26 0.28
42 16 0.17
43 50 0.54
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATGTAATCACATATCGATGCCAATG
Found at i:17982394 original size:21 final size:21
Alignment explanation
Indices: 17982368--17982409 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
17982358 TTAACGGGAC
17982368 AGCTGACGTGGCCAGTTAACT
1 AGCTGACGTGGCCAGTTAACT
* *
17982389 AGCTGATGTGGCTAGTTAACT
1 AGCTGACGTGGCCAGTTAACT
17982410 TGCCATGTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.29
Consensus pattern (21 bp):
AGCTGACGTGGCCAGTTAACT
Found at i:17984663 original size:17 final size:17
Alignment explanation
Indices: 17984643--17984676 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
17984633 TATATTACTA
17984643 TTATTATCCAT-TATTTT
1 TTATTAT-CATATATTTT
17984660 TTATTATCATATATTTT
1 TTATTATCATATATTTT
17984677 ATCTATAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.19
17 13 0.81
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATTATCATATATTTT
Found at i:17984713 original size:14 final size:14
Alignment explanation
Indices: 17984658--17984732 Score: 55
Period size: 14 Copynumber: 5.3 Consensus size: 14
17984648 ATCCATTATT
*
17984658 TTTTATTATCATATA
1 TTTTATT-TTATATA
* *
17984673 TTTTATCTATAAATTA
1 TTTTAT-TTTATA-TA
* *
17984689 TATTATATTATATA
1 TTTTATTTTATATA
17984703 TTTTATTTTATATA
1 TTTTATTTTATATA
*
17984717 -TTT-CTTTATATA
1 TTTTATTTTATATA
17984729 TTTT
1 TTTT
17984733 TTATAAAATT
Statistics
Matches: 47, Mismatches: 10, Indels: 8
0.72 0.15 0.12
Matches are distributed among these distances:
12 8 0.17
13 6 0.13
14 14 0.30
15 11 0.23
16 8 0.17
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (14 bp):
TTTTATTTTATATA
Found at i:17984724 original size:12 final size:11
Alignment explanation
Indices: 17984708--17984737 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
17984698 ATATATTTTA
17984708 TTTTATATATT
1 TTTTATATATT
17984719 TCTTTATATATT
1 T-TTTATATATT
17984731 TTTTATA
1 TTTTATA
17984738 AAATTGTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTATATATT
Found at i:17984755 original size:20 final size:21
Alignment explanation
Indices: 17984727--17984766 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
17984717 TTTCTTTATA
*
17984727 TATTTTTTA-TAAAATTGTAT
1 TATTATTTACTAAAATTGTAT
*
17984747 TATTATTTACTAAATTTGTA
1 TATTATTTACTAAAATTGTA
17984767 AATGGAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (21 bp):
TATTATTTACTAAAATTGTAT
Found at i:17985131 original size:21 final size:18
Alignment explanation
Indices: 17985082--17985122 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
17985072 TACCATATTA
* *
17985082 TATTTCATACTATATTTT
1 TATTACATATTATATTTT
17985100 TATTACATATTATATTTT
1 TATTACATATTATATTTT
17985118 TATTA
1 TATTA
17985123 TTCAATATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (18 bp):
TATTACATATTATATTTT
Found at i:17985195 original size:22 final size:22
Alignment explanation
Indices: 17985164--17985206 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
17985154 ATATATATTT
* *
17985164 TTATTATATATTATTTATTTTG
1 TTATTATATACTAATTATTTTG
*
17985186 TTATTTTATACTAATTATTTT
1 TTATTATATACTAATTATTTT
17985207 AACATATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (22 bp):
TTATTATATACTAATTATTTTG
Found at i:17985256 original size:21 final size:22
Alignment explanation
Indices: 17985232--17985292 Score: 65
Period size: 21 Copynumber: 2.8 Consensus size: 22
17985222 GCAAAATACT
17985232 TATTATATTT-TTATTATTTTA
1 TATTATATTTCTTATTATTTTA
17985253 TATTATATTTCCTTA-TATTTTA
1 TATTATATTT-CTTATTATTTTA
* *
17985275 T-TCATATTATATTATTAT
1 TATTATATT-TCTTATTAT
17985293 ACATAACTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
21 19 0.56
22 12 0.35
23 3 0.09
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.66
Consensus pattern (22 bp):
TATTATATTTCTTATTATTTTA
Found at i:17988496 original size:40 final size:39
Alignment explanation
Indices: 17988447--17988583 Score: 150
Period size: 40 Copynumber: 3.5 Consensus size: 39
17988437 GACTTAAGGT
*
17988447 CCGCAGGCTATGTGCTAGAATTATATCCGGGTTTAAATAC
1 CCGCAGGCTATATGCTAGAATTATATCCGGGTTTAAAT-C
* ** *
17988487 CCGCAGGCTATATGCTGGAATTATATCCGGACTTAAGGT-
1 CCGCAGGCTATATGCTAGAATTATATCCGGGTTTAA-ATC
* *
17988526 CCACAGGCTATATGCTAGAAATATATCCGGGTTTAAAGTC
1 CCGCAGGCTATATGCTAGAATTATATCCGGGTTTAAA-TC
* * *
17988566 CCGAAGGCTTTGTGCTAG
1 CCGCAGGCTATATGCTAG
17988584 TGACTGAACT
Statistics
Matches: 79, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
39 32 0.41
40 46 0.58
41 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.28
Consensus pattern (39 bp):
CCGCAGGCTATATGCTAGAATTATATCCGGGTTTAAATC
Found at i:17988533 original size:79 final size:77
Alignment explanation
Indices: 17988419--17988562 Score: 243
Period size: 79 Copynumber: 1.8 Consensus size: 77
17988409 AATATGCATG
* * *
17988419 ATATCTGGAATTATATCGGACTTAAGGTCCGCAGGCTATGTGCTAGAATTATATCCGGGTTTAAA
1 ATATCTGGAATTATATCGGACTTAAGGTCCACAGGCTATATGCTAGAAATATATCCGGGTTTAAA
17988484 TACCCGCAGGCT
66 TACCCGCAGGCT
17988496 ATATGCTGGAATTATATCCGGACTTAAGGTCCACAGGCTATATGCTAGAAATATATCCGGGTTTA
1 ATAT-CTGGAATTATAT-CGGACTTAAGGTCCACAGGCTATATGCTAGAAATATATCCGGGTTTA
17988561 AA
64 AA
17988563 GTCCCGAAGG
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
77 4 0.06
78 12 0.19
79 46 0.74
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (77 bp):
ATATCTGGAATTATATCGGACTTAAGGTCCACAGGCTATATGCTAGAAATATATCCGGGTTTAAA
TACCCGCAGGCT
Found at i:17988541 original size:39 final size:39
Alignment explanation
Indices: 17988426--17988555 Score: 165
Period size: 39 Copynumber: 3.3 Consensus size: 39
17988416 ATGATATCTG
*
17988426 GAATTATAT-CGGACTTAAGGTCCGCAGGCTATGTGCTA
1 GAATTATATCCGGACTTAAGGTCCGCAGGCTATATGCTA
** * *
17988464 GAATTATATCCGGGTTTAA-ATACCCGCAGGCTATATGCTG
1 GAATTATATCCGGACTTAAGGT--CCGCAGGCTATATGCTA
*
17988504 GAATTATATCCGGACTTAAGGTCCACAGGCTATATGCTA
1 GAATTATATCCGGACTTAAGGTCCGCAGGCTATATGCTA
*
17988543 GAAATATATCCGG
1 GAATTATATCCGG
17988556 GTTTAAAGTC
Statistics
Matches: 77, Mismatches: 11, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
38 10 0.13
39 34 0.44
40 32 0.42
41 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.28
Consensus pattern (39 bp):
GAATTATATCCGGACTTAAGGTCCGCAGGCTATATGCTA
Found at i:18000427 original size:206 final size:206
Alignment explanation
Indices: 18000062--18000617 Score: 916
Period size: 206 Copynumber: 2.7 Consensus size: 206
18000052 GCAGATCTGG
* *
18000062 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAAAAAATCGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCT
* *
18000127 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTTAG
65 GATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * * * *
18000192 AGAGCAGATCGAAGTTTGGCGTATCCATATTCGATGGAGGGCAGACACATAGTAGATCTAACCTT
130 AGAACAAATCGAAGTTTGGCGTATCCATATTCGACGGAGGGCAAACACATAGCAGATCTAACCTT
18000257 CAGATGATTAGA
195 CAGATGATTAGA
18000269 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAA-ATCATAGCT
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGA-CATAGCT
* * * * *
18000333 GATTTAGCTTTCACGTGCTTACGCTGAAGTAAGTCTAAGATGATTTAGCATCTCTGTATTGTCAA
65 GATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
*
18000398 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAAACACATAGCAGATCTAACCTT
130 AGAACAAATCGAAGTTTGGCGTATCCATATTCGACGGAGGGCAAACACATAGCAGATCTAACCTT
18000463 CAGATGATTAGA
195 CAGATGATTAGA
* * *
18000475 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTG
*
18000540 ATTTGGTTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
18000605 GAACAAATCGAAG
131 GAACAAATCGAAG
18000618 AAGCAGATTT
Statistics
Matches: 323, Mismatches: 24, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
205 1 0.00
206 314 0.97
207 8 0.02
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (206 bp):
CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCGAAGTTTGGCGTATCCATATTCGACGGAGGGCAAACACATAGCAGATCTAACCTTC
AGATGATTAGA
Found at i:18002252 original size:17 final size:17
Alignment explanation
Indices: 18002232--18002265 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
18002222 TATATTACTA
18002232 TTATTATC-TATTATTTT
1 TTATTATCATA-TATTTT
18002249 TTATTATCATATATTTT
1 TTATTATCATATATTTT
18002266 ATCTATAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.88
18 2 0.12
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (17 bp):
TTATTATCATATATTTT
Found at i:18002289 original size:28 final size:30
Alignment explanation
Indices: 18002222--18002290 Score: 72
Period size: 28 Copynumber: 2.3 Consensus size: 30
18002212 ATATTAGTTA
** *
18002222 TATATTACTATTATTATCTATTATTTTTTAT
1 TATATTA-TATTATTATCTATTAAATTATAT
18002253 TATCA-TATATT-TTATCTA-TAAATTATAT
1 TAT-ATTATATTATTATCTATTAAATTATAT
18002281 TATATTATAT
1 TATATTATAT
18002291 ATTTTATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
27 1 0.03
28 15 0.45
29 7 0.21
30 4 0.12
31 5 0.15
32 1 0.03
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (30 bp):
TATATTATATTATTATCTATTAAATTATAT
Found at i:18002296 original size:45 final size:48
Alignment explanation
Indices: 18002220--18002308 Score: 114
Period size: 45 Copynumber: 1.9 Consensus size: 48
18002210 AAATATTAGT
* *
18002220 TATATATTACTATTATTATCTATTATTTTTTATTATCATATATTTTATC
1 TATAAATTACTATTATTATCTATTATATTTTATT-TCATATATTTTATC
*
18002269 TATAAATTA-TATTA-TAT-TA-TATATTTTATTTTATATATTT
1 TATAAATTACTATTATTATCTATTATATTTTATTTCATATATTT
18002309 CTTTATATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
44 9 0.24
45 10 0.27
46 2 0.05
47 3 0.08
48 5 0.14
49 8 0.22
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (48 bp):
TATAAATTACTATTATTATCTATTATATTTTATTTCATATATTTTATC
Found at i:18002337 original size:20 final size:21
Alignment explanation
Indices: 18002314--18002353 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
18002304 TATTTCTTTA
*
18002314 TATTTTTTA-TAAAATTGTAT
1 TATTATTTACTAAAATTGTAT
*
18002334 TATTATTTACTAAATTTGTA
1 TATTATTTACTAAAATTGTA
18002354 AATGGCAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (21 bp):
TATTATTTACTAAAATTGTAT
Found at i:18002686 original size:18 final size:18
Alignment explanation
Indices: 18002660--18002700 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
18002650 TACCATATTA
*
18002660 TATTTCATACTATATTTT
1 TATTACATACTATATTTT
18002678 TATTACATACTATATTTT
1 TATTACATACTATATTTT
18002696 TATTA
1 TATTA
18002701 TTCAATATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.59
Consensus pattern (18 bp):
TATTACATACTATATTTT
Found at i:18002772 original size:22 final size:22
Alignment explanation
Indices: 18002735--18002784 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
18002725 CTTTCTCATA
* *
18002735 TATTTT-TTATTATATATTATT
1 TATTTTATTATTATATACTAAT
*
18002756 TATTTTATTATTTTATACTAAT
1 TATTTTATTATTATATACTAAT
18002778 TATTTTA
1 TATTTTA
18002785 CCATATTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 6 0.24
22 19 0.76
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (22 bp):
TATTTTATTATTATATACTAAT
Found at i:18002835 original size:21 final size:22
Alignment explanation
Indices: 18002809--18002869 Score: 65
Period size: 21 Copynumber: 2.8 Consensus size: 22
18002799 GCAAAATACT
18002809 TATTATATTT-TTATTATTTTA
1 TATTATATTTCTTATTATTTTA
18002830 TATTATATTTCCTTA-TATTTTA
1 TATTATATTT-CTTATTATTTTA
* *
18002852 T-TCATATTATATTATTAT
1 TATTATATT-TCTTATTAT
18002870 ACATAACTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
21 19 0.56
22 12 0.35
23 3 0.09
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.66
Consensus pattern (22 bp):
TATTATATTTCTTATTATTTTA
Found at i:18004889 original size:3 final size:3
Alignment explanation
Indices: 18004881--18004933 Score: 56
Period size: 3 Copynumber: 18.0 Consensus size: 3
18004871 CTTTTTCTCC
* *
18004881 TCT TCT TCT T-T TCT TCT TCT TCT CCGT TCT TCT TTT TCT T-T TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TC-T TCT TCT TCT TCT TCT TCT
*
18004925 TCT TTT TCT
1 TCT TCT TCT
18004934 ACTGCCCAGG
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
2 4 0.10
3 35 0.85
4 2 0.05
ACGTcount: A:0.00, C:0.28, G:0.02, T:0.70
Consensus pattern (3 bp):
TCT
Found at i:18004898 original size:14 final size:14
Alignment explanation
Indices: 18004881--18004933 Score: 61
Period size: 14 Copynumber: 3.6 Consensus size: 14
18004871 CTTTTTCTCC
18004881 TCTTCTTCTTTTCT
1 TCTTCTTCTTTTCT
*
18004895 TCTTCTTCTCCGTTCT
1 TCTTCTTCT--TTTCT
*
18004911 TCTTTTTCTTTTCT
1 TCTTCTTCTTTTCT
*
18004925 TCTTTTTCT
1 TCTTCTTCT
18004934 ACTGCCCAGG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
14 22 0.65
16 12 0.35
ACGTcount: A:0.00, C:0.28, G:0.02, T:0.70
Consensus pattern (14 bp):
TCTTCTTCTTTTCT
Found at i:18012540 original size:43 final size:43
Alignment explanation
Indices: 18012479--18012590 Score: 154
Period size: 43 Copynumber: 2.6 Consensus size: 43
18012469 TTATGAAAAA
* * *
18012479 AAACGCCGCTAAAAGTCATGACCTTTAGCGGCGC-TCTCCTCAC
1 AAACGCCGCTAAAGGTCATGACCTTTAGCAGCCCTTCTCC-CAC
* *
18012522 AAACGCCGCTACAGGTCATGACCTTTAGCAGCCCTTTTCCCAC
1 AAACGCCGCTAAAGGTCATGACCTTTAGCAGCCCTTCTCCCAC
*
18012565 AAACGCCGCTAAAGGTCATAACCTTT
1 AAACGCCGCTAAAGGTCATGACCTTT
18012591 TAAAAAATTA
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
43 57 0.93
44 4 0.07
ACGTcount: A:0.27, C:0.34, G:0.17, T:0.22
Consensus pattern (43 bp):
AAACGCCGCTAAAGGTCATGACCTTTAGCAGCCCTTCTCCCAC
Found at i:18012627 original size:20 final size:20
Alignment explanation
Indices: 18012602--18012657 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 20
18012592 AAAAAATTAT
18012602 TTTATTTTAATTAAATAATA
1 TTTATTTTAATTAAATAATA
* *
18012622 TTTATTTCTATTTTAAATATTA
1 TTTATTT-TA-ATTAAATAATA
18012644 TATTATGTTTAATT
1 T-TTAT-TTTAATT
18012658 TTTGAAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
20 7 0.24
21 2 0.07
22 12 0.41
23 6 0.21
24 2 0.07
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (20 bp):
TTTATTTTAATTAAATAATA
Found at i:18014116 original size:521 final size:521
Alignment explanation
Indices: 18013135--18017301 Score: 8289
Period size: 521 Copynumber: 8.0 Consensus size: 521
18013125 CTCAAAGCCA
18013135 CATATGTCAAAGCACATTATCTGATCTCTTTGAATTATGATATGGAAAGATAAATTTTTAATAAT
1 CATATGTCAAAGCACATTATCTGATCTCTTTGAATTATGATATGGAAAGATAAATTTTTAATAAT
18013200 GCCACTATAATGCACGAATTAGAATTTGTTTCGACAAAAGTCATTGATCATGTTATTAATCATGT
66 GCCACTATAATGCACGAATTAGAATTTGTTTCGACAAAAGTCATTGATCATGTTATTAATCATGT
*
18013265 GCCTTTACATGTACAGGCGTTGCATCTAAAACCTACATAGTTTAAATAAAAAATATCACCAAATC
131 GCCTTTACATGTACAGGCATTGCATCTAAAACCTACATAGTTTAAATAAAAAATATCACCAAATC
18013330 CATGGCCTATCCTCAAACAATCTATTATTTAGATATGTAAACAAGTCAAACAGAAAGCAGCTCAT
196 CATGGCCTATCCTCAAACAATCTATTATTTAGATATGTAAACAAGTCAAACAGAAAGCAGCTCAT
*
18013395 GGCAAAGCATTTTCCTAATCCACTATGTTAGTTGTTTTTATCTTTATTTCCTCCCTGAGTTCAAT
261 GGCAAAGCATTTTCCTAATCCACTATGTTAGTTGTTTTTATCTTTATTTCTTCCCTGAGTTCAAT
18013460 TTTAAACCTCAAAATATCTAAATATATTGATGCTCAGAATGCTTAATATTGCGGACAACTAACAC
326 TTTAAACCTCAAAATATCTAAATATATTGATGCTCAGAATGCTTAATATTGCGGACAACTAACAC
18013525 AATAGTCTAATACTGTTTTATCTACTATGAAAAAATACTAAATTGTAAGTTACATAGAGAAAAAT
391 AATAGTCTAATACTGTTTTATCTACTATGAAAAAATACTAAATTGTAAGTTACATAGAGAAAAAT
18013590 TTCAATTATTTTCACTTCAGAAAGCACCAAAAGAGTTGAACAACCAGCCTAATTTTAATCTGTTA
456 TTCAATTATTTTCACTTCAGAAAGCACCAAAAGAGTTGAACAACCAGCCTAATTTTAATCTGTTA
18013655 G
521 G
18013656 CATATGTCAAAGCACATTATCTGATCTCTTTGAATTATGATATGGAAAGATAAATTTTTAATAAT
1 CATATGTCAAAGCACATTATCTGATCTCTTTGAATTATGATATGGAAAGATAAATTTTTAATAAT
18013721 GCCACTATAATGCACGAATTAGAATTTGTTTCGACAAAAGTCATTGATCATGTTATTAATCATGT
66 GCCACTATAATGCACGAATTAGAATTTGTTTCGACAAAAGTCATTGATCATGTTATTAATCATGT
18013786 GCCTTTACATGTACAGGCATTGCATCTAAAACCTACATAGTTTAAATAAAAAATATCACCAAATC
131 GCCTTTACATGTACAGGCATTGCATCTAAAACCTACATAGTTTAAATAAAAAATATCACCAAATC
18013851 CATGGCCTATCCTCAAACAATCTATTATTTAGATATGTAAACAAGTCAAACAGAAAGCAGCTCAT
196 CATGGCCTATCCTCAAACAATCTATTATTTAGATATGTAAACAAGTCAAACAGAAAGCAGCTCAT
18013916 GGCAAAGCATTTTCCTAATCCACTATGTTAGTTGTTTTTATCTTTATTTCTTCCCTGAGTTCAAT
261 GGCAAAGCATTTTCCTAATCCACTATGTTAGTTGTTTTTATCTTTATTTCTTCCCTGAGTTCAAT
18013981 TTTAAACCTCAAAATATCTAAATATATTGATGCTCAGAATGCTTAATATTGCGGACAACTAACAC
326 TTTAAACCTCAAAATATCTAAATATATTGATGCTCAGAATGCTTAATATTGCGGACAACTAACAC
18014046 AATAGTCTAATACTGTTTTATCTACTATGAAAAAATACTAAATTGTAAGTTACATAGAGAAAAAT
391 AATAGTCTAATACTGTTTTATCTACTATGAAAAAATACTAAATTGTAAGTTACATAGAGAAAAAT
18014111 TTCAATTATTTTCACTTCAGAAAGCACCAAAAGAGTTGAACAACCAGCCTAATTTTAATCTGTTA
456 TTCAATTATTTTCACTTCAGAAAGCACCAAAAGAGTTGAACAACCAGCCTAATTTTAATCTGTTA
18014176 G
521 G
18014177 CATATGTCAAAGCACATTATCTGATCTCTTTGAATTATGATATGGAAAGATAAATTTTTAATAAT
1 CATATGTCAAAGCACATTATCTGATCTCTTTGAATTATGATATGGAAAGATAAATTTTTAATAAT
18014242 GCCACTATAATGCACGAATTAGAATTTGTTTCGACAAAAGTCATTGATCATGTTATTAATCATGT
66 GCCACTATAATGCACGAATTAGAATTTGTTTCGACAAAAGTCATTGATCATGTTATTAATCATGT
18014307 GCCTTTACATGTACAGGCATTGCATCTAAAACCTACATAGTTTAAATAAAAAATATCACCAAATC
131 GCCTTTACATGTACAGGCATTGCATCTAAAACCTACATAGTTTAAATAAAAAATATCACCAAATC
18014372 CATGGCCTATCCTCAAACAATCTATTATTTAGATATGTAAACAAGTCAAACAGAAAGCAGCTCAT
196 CATGGCCTATCCTCAAACAATCTATTATTTAGATATGTAAACAAGTCAAACAGAAAGCAGCTCAT
18014437 GGCAAAGCATTTTCCTAATCCACTATGTTAGTTGTTTTTATCTTTATTTCTTCCCTGAGTTCAAT
261 GGCAAAGCATTTTCCTAATCCACTATGTTAGTTGTTTTTATCTTTATTTCTTCCCTGAGTTCAAT
18014502 TTTAAACCTCAAAATATCTAAATATATTGATGCTCAGAATGCTTAATATTGCGGACAACTAACAC
326 TTTAAACCTCAAAATATCTAAATATATTGATGCTCAGAATGCTTAATATTGCGGACAACTAACAC
18014567 AATAGTCTAATACTGTTTTATCTACTATGAAAAAATACTAAATTGTAAGTTACATAGAGAAAAAT
391 AATAGTCTAATACTGTTTTATCTACTATGAAAAAATACTAAATTGTAAGTTACATAGAGAAAAAT
18014632 TTCAATTATTTTCACTTCAGAAAGCACCAAAAGAGTTGAACAACCAGCCTAATTTTAATCTGTTA
456 TTCAATTATTTTCACTTCAGAAAGCACCAAAAGAGTTGAACAACCAGCCTAATTTTAATCTGTTA
18014697 G
521 G
18014698 CATATGTCAAAGCACATTATCTGATCTCTTTGAATTATGATATGGAAAGATAAATTTTTAATAAT
1 CATATGTCAAAGCACATTATCTGATCTCTTTGAATTATGATATGGAAAGATAAATTTTTAATAAT
18014763 GCCACTATAATGCACGAATTAGAATTTGTTTCGACAAAAGTCATTGATCATGTTATTAATCATGT
66 GCCACTATAATGCACGAATTAGAATTTGTTTCGACAAAAGTCATTGATCATGTTATTAATCATGT
18014828 GCCTTTACATGTACAGGCATTGCATCTAAAACCTACATAGTTTAAATAAAAAATATCACCAAATC
131 GCCTTTACATGTACAGGCATTGCATCTAAAACCTACATAGTTTAAATAAAAAATATCACCAAATC
18014893 CATGGCCTATCCTCAAACAATCTATTATTTAGATATGTAAACAAGTCAAACAGAAAGCAGCTCAT
196 CATGGCCTATCCTCAAACAATCTATTATTTAGATATGTAAACAAGTCAAACAGAAAGCAGCTCAT
18014958 GGCAAAGCATTTTCCTAATCCACTATGTTAGTTGTTTTTATCTTTATTTCTTCCCTGAGTTCAAT
261 GGCAAAGCATTTTCCTAATCCACTATGTTAGTTGTTTTTATCTTTATTTCTTCCCTGAGTTCAAT
18015023 TTTAAACCTCAAAATATCTAAATATATTGATGCTCAGAATGCTTAATATTGCGGACAACTAACAC
326 TTTAAACCTCAAAATATCTAAATATATTGATGCTCAGAATGCTTAATATTGCGGACAACTAACAC
18015088 AATAGTCTAATACTGTTTTATCTACTATGAAAAAATACTAAATTGTAAGTTACATAGAGAAAAAT
391 AATAGTCTAATACTGTTTTATCTACTATGAAAAAATACTAAATTGTAAGTTACATAGAGAAAAAT
18015153 TTCAATTATTTTCACTTCAGAAAGCACCAAAAGAGTTGAACAACCAGCCTAATTTTAATCTGTTA
456 TTCAATTATTTTCACTTCAGAAAGCACCAAAAGAGTTGAACAACCAGCCTAATTTTAATCTGTTA
18015218 G
521 G
18015219 CATATGTCAAAGCACATTATCTGATCTCTTTGAATTATGATATGGAAAGATAAATTTTTAATAAT
1 CATATGTCAAAGCACATTATCTGATCTCTTTGAATTATGATATGGAAAGATAAATTTTTAATAAT
18015284 GCCACTATAATGCACGAATTAGAATTTGTTTCGACAAAAGTCATTGATCATGTTATTAATCATGT
66 GCCACTATAATGCACGAATTAGAATTTGTTTCGACAAAAGTCATTGATCATGTTATTAATCATGT
18015349 GCCTTTACATGTACAGGCATTGCATCTAAAACCTACATAGTTTAAATAAAAAATATCACCAAATC
131 GCCTTTACATGTACAGGCATTGCATCTAAAACCTACATAGTTTAAATAAAAAATATCACCAAATC
18015414 CATGGCCTATCCTCAAACAATCTATTATTTAGATATGTAAACAAGTCAAACAGAAAGCAGCTCAT
196 CATGGCCTATCCTCAAACAATCTATTATTTAGATATGTAAACAAGTCAAACAGAAAGCAGCTCAT
18015479 GGCAAAGCATTTTCCTAATCCACTATGTTAGTTGTTTTTATCTTTATTTCTTCCCTGAGTTCAAT
261 GGCAAAGCATTTTCCTAATCCACTATGTTAGTTGTTTTTATCTTTATTTCTTCCCTGAGTTCAAT
18015544 TTTAAACCTCAAAATATCTAAATATATTGATGCTCAGAATGCTTAATATTGCGGACAACTAACAC
326 TTTAAACCTCAAAATATCTAAATATATTGATGCTCAGAATGCTTAATATTGCGGACAACTAACAC
18015609 AATAGTCTAATACTGTTTTATCTACTATGAAAAAATACTAAATTGTAAGTTACATAGAGAAAAAT
391 AATAGTCTAATACTGTTTTATCTACTATGAAAAAATACTAAATTGTAAGTTACATAGAGAAAAAT
18015674 TTCAATTATTTTCACTTCAGAAAGCACCAAAAGAGTTGAACAACCAGCCTAATTTTAATCTGTTA
456 TTCAATTATTTTCACTTCAGAAAGCACCAAAAGAGTTGAACAACCAGCCTAATTTTAATCTGTTA
18015739 G
521 G
18015740 CATATGTCAAAGCACATTATCTGATCTCTTTGAATTATGATATGGAAAGATAAATTTTTAATAAT
1 CATATGTCAAAGCACATTATCTGATCTCTTTGAATTATGATATGGAAAGATAAATTTTTAATAAT
18015805 GCCACTATAATGCACGAATTAGAATTTGTTTCGACAAAAGTCATTGATCATGTTATTAATCATGT
66 GCCACTATAATGCACGAATTAGAATTTGTTTCGACAAAAGTCATTGATCATGTTATTAATCATGT
18015870 GCCTTTACATGTACAGGCATTGCATCTAAAACCTACATAGTTTAAATAAAAAATATCACCAAATC
131 GCCTTTACATGTACAGGCATTGCATCTAAAACCTACATAGTTTAAATAAAAAATATCACCAAATC
18015935 CATGGCCTATCCTCAAACAATCTATTATTTAGATATGTAAACAAGTCAAACAGAAAGCAGCTCAT
196 CATGGCCTATCCTCAAACAATCTATTATTTAGATATGTAAACAAGTCAAACAGAAAGCAGCTCAT
18016000 GGCAAAGCATTTTCCTAATCCACTATGTTAGTTGTTTTTATCTTTATTTCTTCCCTGAGTTCAAT
261 GGCAAAGCATTTTCCTAATCCACTATGTTAGTTGTTTTTATCTTTATTTCTTCCCTGAGTTCAAT
18016065 TTTAAACCTCAAAATATCTAAATATATTGATGCTCAGAATGCTTAATATTGCGGACAACTAACAC
326 TTTAAACCTCAAAATATCTAAATATATTGATGCTCAGAATGCTTAATATTGCGGACAACTAACAC
18016130 AATAGTCTAATACTGTTTTATCTACTATGAAAAAATACTAAATTGTAAGTTACATAGAGAAAAAT
391 AATAGTCTAATACTGTTTTATCTACTATGAAAAAATACTAAATTGTAAGTTACATAGAGAAAAAT
18016195 TTCAATTATTTTCACTTCAGAAAGCACCAAAAGAGTTGAACAACCAGCCTAATTTTAATCTGTTA
456 TTCAATTATTTTCACTTCAGAAAGCACCAAAAGAGTTGAACAACCAGCCTAATTTTAATCTGTTA
18016260 G
521 G
18016261 CATATGTCAAAGCACATTATCTGATCTCTTTGAATTATGATATGGAAAGATAAATTTTTAATAAT
1 CATATGTCAAAGCACATTATCTGATCTCTTTGAATTATGATATGGAAAGATAAATTTTTAATAAT
18016326 GCCACTATAATGCACGAATTAGAATTTGTTTCGACAAAAGTCATTGATCATGTTATTAATCATGT
66 GCCACTATAATGCACGAATTAGAATTTGTTTCGACAAAAGTCATTGATCATGTTATTAATCATGT
18016391 GCCTTTACATGTACAGGCATTGCATCTAAAACCTACATAGTTTAAATAAAAAATATCACCAAATC
131 GCCTTTACATGTACAGGCATTGCATCTAAAACCTACATAGTTTAAATAAAAAATATCACCAAATC
18016456 CATGGCCTATCCTCAAACAATCTATTATTTAGATATGTAAACAAGTCAAACAGAAAGCAGCTCAT
196 CATGGCCTATCCTCAAACAATCTATTATTTAGATATGTAAACAAGTCAAACAGAAAGCAGCTCAT
18016521 GGCAAAGCATTTTCCTAATCCACTATGTTAGTTGTTTTTATCTTTATTTCTTCCCTGAGTTCAAT
261 GGCAAAGCATTTTCCTAATCCACTATGTTAGTTGTTTTTATCTTTATTTCTTCCCTGAGTTCAAT
18016586 TTTAAACCTCAAAATATCTAAATATATTGATGCTCAGAATGCTTAATATTGCGGACAACTAACAC
326 TTTAAACCTCAAAATATCTAAATATATTGATGCTCAGAATGCTTAATATTGCGGACAACTAACAC
18016651 AATAGTCTAATACTGTTTTATCTACTATGAAAAAATACTAAATTGTAAGTTACATAGAGAAAAAT
391 AATAGTCTAATACTGTTTTATCTACTATGAAAAAATACTAAATTGTAAGTTACATAGAGAAAAAT
18016716 TTCAATTATTTTCACTTCAGAAAGCACCAAAAGAGTTGAACAACCAGCCTAATTTTAATCTGTTA
456 TTCAATTATTTTCACTTCAGAAAGCACCAAAAGAGTTGAACAACCAGCCTAATTTTAATCTGTTA
18016781 G
521 G
18016782 CATATGTCAAAGCACATTATCTGATCTCTTTGAATTATGATATGGAAAGATAAATTTTTAATAAT
1 CATATGTCAAAGCACATTATCTGATCTCTTTGAATTATGATATGGAAAGATAAATTTTTAATAAT
18016847 GCCACTATAATGCACGAATTAGAATTTGTTTCGACAAAAGTCATTGATCATGTTATTAATCATGT
66 GCCACTATAATGCACGAATTAGAATTTGTTTCGACAAAAGTCATTGATCATGTTATTAATCATGT
18016912 GCCTTTACATGTACAGGCATTGCATCTAAAACCTACATAGTTTAAATAAAAAATATCACCAAATC
131 GCCTTTACATGTACAGGCATTGCATCTAAAACCTACATAGTTTAAATAAAAAATATCACCAAATC
18016977 CATGGCCTATCCTCAAACAATCTATTATTTAGATATGTAAACAAGTCAAACAGAAAGCAGCTCAT
196 CATGGCCTATCCTCAAACAATCTATTATTTAGATATGTAAACAAGTCAAACAGAAAGCAGCTCAT
18017042 GGCAAAGCATTTTCCTAATCCACTATGTTAGTTGTTTTTATCTTTATTTCTTCCCTGAGTTCAAT
261 GGCAAAGCATTTTCCTAATCCACTATGTTAGTTGTTTTTATCTTTATTTCTTCCCTGAGTTCAAT
18017107 TTTAAACCTCAAAATATCTAAATATATTGATGCTCAGAATGCTTAATATTGCGGACAACTAACAC
326 TTTAAACCTCAAAATATCTAAATATATTGATGCTCAGAATGCTTAATATTGCGGACAACTAACAC
18017172 AATAGTCTAATACTGTTTTATCTACTATGAAAAAATACTAAATTGTAAGTTACATAGAGAAAAAT
391 AATAGTCTAATACTGTTTTATCTACTATGAAAAAATACTAAATTGTAAGTTACATAGAGAAAAAT
* * *
18017237 TTCAATTATTTTCACTTCAGAAAGCACCAAAAGAGTTGAACAACCCGCCTAAGTTTCATCTGTTA
456 TTCAATTATTTTCACTTCAGAAAGCACCAAAAGAGTTGAACAACCAGCCTAATTTTAATCTGTTA
18017302 AGGTGGAAAA
Statistics
Matches: 3641, Mismatches: 5, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
521 3641 1.00
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (521 bp):
CATATGTCAAAGCACATTATCTGATCTCTTTGAATTATGATATGGAAAGATAAATTTTTAATAAT
GCCACTATAATGCACGAATTAGAATTTGTTTCGACAAAAGTCATTGATCATGTTATTAATCATGT
GCCTTTACATGTACAGGCATTGCATCTAAAACCTACATAGTTTAAATAAAAAATATCACCAAATC
CATGGCCTATCCTCAAACAATCTATTATTTAGATATGTAAACAAGTCAAACAGAAAGCAGCTCAT
GGCAAAGCATTTTCCTAATCCACTATGTTAGTTGTTTTTATCTTTATTTCTTCCCTGAGTTCAAT
TTTAAACCTCAAAATATCTAAATATATTGATGCTCAGAATGCTTAATATTGCGGACAACTAACAC
AATAGTCTAATACTGTTTTATCTACTATGAAAAAATACTAAATTGTAAGTTACATAGAGAAAAAT
TTCAATTATTTTCACTTCAGAAAGCACCAAAAGAGTTGAACAACCAGCCTAATTTTAATCTGTTA
G
Found at i:18023161 original size:7 final size:7
Alignment explanation
Indices: 18023121--18023218 Score: 58
Period size: 7 Copynumber: 13.9 Consensus size: 7
18023111 ACTAATTAAT
18023121 CTAAACC
1 CTAAACC
18023128 CTAAATCC
1 CTAAA-CC
18023136 CT-AACC
1 CTAAACC
*
18023142 CTTTAACC
1 C-TAAACC
18023150 CTAAACC
1 CTAAACC
*
18023157 TTAAACC
1 CTAAACC
*
18023164 C-AACCCC
1 CTAA-ACC
*
18023171 CTAAAAC
1 CTAAACC
*
18023178 TTAAACC
1 CTAAACC
18023185 CT-AACC
1 CTAAACC
* *
18023191 TTTAACC
1 CTAAACC
18023198 CATAAACC
1 C-TAAACC
* *
18023206 ATAATCC
1 CTAAACC
18023213 CTAAAC
1 CTAAAC
18023219 ACATAATCCA
Statistics
Matches: 68, Mismatches: 16, Indels: 14
0.69 0.16 0.14
Matches are distributed among these distances:
6 10 0.15
7 42 0.62
8 16 0.24
ACGTcount: A:0.40, C:0.39, G:0.00, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:18023174 original size:21 final size:22
Alignment explanation
Indices: 18023148--18023190 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
18023138 AACCCTTTAA
*
18023148 CCCTAAACCTTAAACCC-AACC
1 CCCTAAAACTTAAACCCTAACC
18023169 CCCTAAAACTTAAACCCTAACC
1 CCCTAAAACTTAAACCCTAACC
18023191 TTTAACCCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.40, C:0.44, G:0.00, T:0.16
Consensus pattern (22 bp):
CCCTAAAACTTAAACCCTAACC
Found at i:18023223 original size:15 final size:14
Alignment explanation
Indices: 18023197--18023234 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
18023187 AACCTTTAAC
18023197 CCATAAACCATAAT
1 CCATAAACCATAAT
*
18023211 CCCTAAACACATAAT
1 CCATAAAC-CATAAT
18023226 CCATAAACC
1 CCATAAACC
18023235 TTACAATAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.47, C:0.34, G:0.00, T:0.18
Consensus pattern (14 bp):
CCATAAACCATAAT
Found at i:18023787 original size:196 final size:199
Alignment explanation
Indices: 18023452--18023822 Score: 534
Period size: 196 Copynumber: 1.9 Consensus size: 199
18023442 TTTTGTGGCG
* * * * *
18023452 TTTTTCAAAAAACACTGCTAAAGATCGAGTATTAGCAGCGTTTTTTAAAAAGCGTCGCTAAAGGT
1 TTTTTAAAAAAACACCGCTAAAGATCAAGTATTAGCAGCGTTTTTAAAAAAGCGCCGCTAAAGGT
* * * *
18023517 GTACTTATAGCGGCATTTCTTAAAAAAGCGCTGCTAATACTCGATCTTTAGCGGCGTTTTTAAAA
66 GTACATATAGCGGCAGTTCTTAAAAAAGCGCCGCTAATACTCGATCTTTAACGGCGTTTTTAAAA
* * *
18023582 AGTGCCGCTAAA-CCACTAAAATCTCAATACAAAACGATGGCGTTTTACAAAATTAATTTGCAGC
131 AGCGCCGCTAAAGCCACCAAAAGCTCAATACAAAACGATGGCGTTTTACAAAATTAATTTGCAGC
18023646 GTTT
196 GTTT
* *
18023650 TTTTTAAAAAAACGCCGCTAAAGATCAAGTATTAGCGGCGTTTTCTAAAAAAGCGCCGCTAAAGG
1 TTTTTAAAAAAACACCGCTAAAGATCAAGTATTAGCAGCGTTTT-TAAAAAAGCGCCGCTAAAGG
* * *
18023715 TGTACATATAGCGTC-GTT-TT-AAAAAGTGCCGCTAATACTCGGTCTTTAACGGCGTTTTTAAA
65 TGTACATATAGCGGCAGTTCTTAAAAAAGCGCCGCTAATACTCGATCTTTAACGGCGTTTTTAAA
* *
18023777 AAGCGCCGCTAAAGCCACCAAAGGCTCAATACCAAACGATGGCGTT
130 AAGCGCCGCTAAAGCCACCAAAAGCTCAATACAAAACGATGGCGTT
18023823 GTGTTAATTT
Statistics
Matches: 152, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
196 50 0.33
197 30 0.20
198 41 0.27
199 31 0.20
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (199 bp):
TTTTTAAAAAAACACCGCTAAAGATCAAGTATTAGCAGCGTTTTTAAAAAAGCGCCGCTAAAGGT
GTACATATAGCGGCAGTTCTTAAAAAAGCGCCGCTAATACTCGATCTTTAACGGCGTTTTTAAAA
AGCGCCGCTAAAGCCACCAAAAGCTCAATACAAAACGATGGCGTTTTACAAAATTAATTTGCAGC
GTTT
Found at i:18034389 original size:17 final size:17
Alignment explanation
Indices: 18034363--18034397 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
18034353 TCGCAGTCTC
*
18034363 TATCAATTTTGCTACAG
1 TATCAATTTTACTACAG
*
18034380 TATCAGTTTTACTACAG
1 TATCAATTTTACTACAG
18034397 T
1 T
18034398 TTTAGTATAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.17, G:0.11, T:0.43
Consensus pattern (17 bp):
TATCAATTTTACTACAG
Found at i:18038752 original size:20 final size:20
Alignment explanation
Indices: 18038727--18038766 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
18038717 GGGTCATGCG
18038727 CCCTTAACTTATAGTAAGTT
1 CCCTTAACTTATAGTAAGTT
*
18038747 CCCTTAACTTATGGTAAGTT
1 CCCTTAACTTATAGTAAGTT
18038767 TGACCTATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.20, G:0.12, T:0.40
Consensus pattern (20 bp):
CCCTTAACTTATAGTAAGTT
Found at i:18047771 original size:50 final size:49
Alignment explanation
Indices: 18047641--18047828 Score: 202
Period size: 50 Copynumber: 3.8 Consensus size: 49
18047631 AATGATCTAT
* * *
18047641 TGTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGAAAA
1 TGTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGA
* * **
18047693 CTGTGA--TCACGTGTGTAGTGCTAAGTGCAGGCTACTACGTGTATTAGA
1 -TGTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
*
18047741 TGGTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
1 T-GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
* * *
18047791 CTGT-TGGTCGCATGTGTAGTACTAAATGCAGGCTACTA
1 -TGTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
18047829 TGCATACCAG
Statistics
Matches: 117, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
47 1 0.01
48 6 0.05
49 30 0.26
50 41 0.35
51 34 0.29
53 5 0.04
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (49 bp):
TGTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
Found at i:18061483 original size:41 final size:41
Alignment explanation
Indices: 18061433--18061541 Score: 114
Period size: 40 Copynumber: 2.7 Consensus size: 41
18061423 TGATGATATA
* * * *
18061433 TCGGTTAAATATGACACTTAGTGTGCGGATTCTG-TATAGCT
1 TCGGCTAAATATAACACTTAGTGTGCGAATT-TGAGATAGCT
* *
18061474 TCGGCTAAATTTAGCACTTAGTGTGC-AATTTGAGATAGCT
1 TCGGCTAAATATAACACTTAGTGTGCGAATTTGAGATAGCT
** *
18061514 TCGGCTATGTACAACACTTAGTGTGCGA
1 TCGGCTAAATATAACACTTAGTGTGCGA
18061542 GACATCAAAT
Statistics
Matches: 55, Mismatches: 11, Indels: 4
0.79 0.16 0.06
Matches are distributed among these distances:
39 2 0.04
40 30 0.55
41 23 0.42
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.34
Consensus pattern (41 bp):
TCGGCTAAATATAACACTTAGTGTGCGAATTTGAGATAGCT
Found at i:18061602 original size:28 final size:28
Alignment explanation
Indices: 18061528--18061621 Score: 118
Period size: 28 Copynumber: 3.4 Consensus size: 28
18061518 CTATGTACAA
* * *
18061528 CACTTAGTGTGCGAGACA-TCAAATATGG
1 CACTTAGTGTGCGAGATATTGAGA-ATGG
*
18061556 CACTTAGTGTGCGAAATATTGAGAATGG
1 CACTTAGTGTGCGAGATATTGAGAATGG
* *
18061584 CACTTAGTGTGCGAGATATTGAGACTAG
1 CACTTAGTGTGCGAGATATTGAGAATGG
18061612 CACTTAGTGT
1 CACTTAGTGT
18061622 ATGAAATATC
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
28 55 0.95
29 3 0.05
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (28 bp):
CACTTAGTGTGCGAGATATTGAGAATGG
Found at i:18061630 original size:28 final size:28
Alignment explanation
Indices: 18061555--18061630 Score: 107
Period size: 28 Copynumber: 2.7 Consensus size: 28
18061545 ATCAAATATG
*
18061555 GCACTTAGTGTGCGAAATATTGAGAATG
1 GCACTTAGTGTGCGAAATATTGAGAATA
* *
18061583 GCACTTAGTGTGCGAGATATTGAGACTA
1 GCACTTAGTGTGCGAAATATTGAGAATA
**
18061611 GCACTTAGTGTATGAAATAT
1 GCACTTAGTGTGCGAAATAT
18061631 CGAATGATTC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (28 bp):
GCACTTAGTGTGCGAAATATTGAGAATA
Found at i:18064011 original size:19 final size:19
Alignment explanation
Indices: 18063989--18064052 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
18063979 CACTTACATG
18063989 CCCCTGTTGTACTTCGGTA
1 CCCCTGTTGTACTTCGGTA
* * * *
18064008 CCCCTAATTGCAATTAC-GTG
1 CCCCT-GTTGTACTT-CGGTA
*
18064028 CCCCTGTTGTACTTTGGTA
1 CCCCTGTTGTACTTCGGTA
18064047 CCCCTG
1 CCCCTG
18064053 ATCACACCTG
Statistics
Matches: 33, Mismatches: 9, Indels: 6
0.69 0.19 0.12
Matches are distributed among these distances:
19 19 0.58
20 13 0.39
21 1 0.03
ACGTcount: A:0.14, C:0.33, G:0.19, T:0.34
Consensus pattern (19 bp):
CCCCTGTTGTACTTCGGTA
Found at i:18064072 original size:29 final size:29
Alignment explanation
Indices: 18064030--18064088 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
18064020 ATTACGTGCC
18064030 CCTGTTGTACTTTGGTACCCCTGATCACA
1 CCTGTTGTACTTTGGTACCCCTGATCACA
18064059 CCTGTTGTACTTTGGTACCCCTGATCACA
1 CCTGTTGTACTTTGGTACCCCTGATCACA
18064088 C
1 C
18064089 TTACGTGCCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.17, C:0.32, G:0.17, T:0.34
Consensus pattern (29 bp):
CCTGTTGTACTTTGGTACCCCTGATCACA
Found at i:18064134 original size:38 final size:39
Alignment explanation
Indices: 18064059--18064160 Score: 127
Period size: 38 Copynumber: 2.6 Consensus size: 39
18064049 CCTGATCACA
18064059 CCTGTTGTACTTTGGTACCCCTGATCACACTTACGTGCC
1 CCTGTTGTACTTTGGTACCCCTGATCACACTTACGTGCC
* *
18064098 CCTGTTGTACTTT-TTACCTCTGGA-CACACTTACGTGCC
1 CCTGTTGTACTTTGGTACCCCT-GATCACACTTACGTGCC
** * *
18064136 CCTGTTACATTTTGGTACTCCTGAT
1 CCTGTTGTACTTTGGTACCCCTGAT
18064161 AGCACTTCCA
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
38 32 0.62
39 20 0.38
ACGTcount: A:0.16, C:0.30, G:0.17, T:0.37
Consensus pattern (39 bp):
CCTGTTGTACTTTGGTACCCCTGATCACACTTACGTGCC
Found at i:18065487 original size:12 final size:13
Alignment explanation
Indices: 18065466--18065497 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
18065456 GTTGTATGGG
18065466 AGCC-TGGGTTCA
1 AGCCTTGGGTTCA
18065478 AG-CTTGGGTTCA
1 AGCCTTGGGTTCA
18065490 AGCCTTGG
1 AGCCTTGG
18065498 CTCTTGCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 1 0.06
12 12 0.67
13 5 0.28
ACGTcount: A:0.16, C:0.22, G:0.34, T:0.28
Consensus pattern (13 bp):
AGCCTTGGGTTCA
Found at i:18066231 original size:27 final size:28
Alignment explanation
Indices: 18066187--18066262 Score: 75
Period size: 27 Copynumber: 2.8 Consensus size: 28
18066177 TATTGAAATG
* * *
18066187 CCCTCGACTTGTAAAATTACCA-AAGTA
1 CCCTCGATTTATAGAATTACCAGAAGTA
* ***
18066214 CTCTCGATTTATAGAATTA-CAGTTTTA
1 CCCTCGATTTATAGAATTACCAGAAGTA
18066241 CCCTCGATTTATAGAATTACCA
1 CCCTCGATTTATAGAATTACCA
18066263 TTTTACCCTC
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.05
27 35 0.90
28 2 0.05
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.34
Consensus pattern (28 bp):
CCCTCGATTTATAGAATTACCAGAAGTA
Found at i:18066246 original size:54 final size:54
Alignment explanation
Indices: 18066187--18066313 Score: 139
Period size: 54 Copynumber: 2.4 Consensus size: 54
18066177 TATTGAAATG
* * * *
18066187 CCCTCGACTTGTAAAATTACCAAAGTACTCTCGATTTATAGAATTACAGTTTTA
1 CCCTCGAATTGTAAAATTACCAAAGTACCCTCAATTTATAAAATTACAGTTTTA
* * * *** *
18066241 CCCTCGATTTATAGAATTACCATTTTACCCTCAATTTATAAAATTACTGTTTTA
1 CCCTCGAATTGTAAAATTACCAAAGTACCCTCAATTTATAAAATTACAGTTTTA
*
18066295 CCCTC-AATTGTGAAATTAC
1 CCCTCGAATTGTAAAATTAC
18066314 TGAAATACCC
Statistics
Matches: 59, Mismatches: 14, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
53 10 0.17
54 49 0.83
ACGTcount: A:0.32, C:0.21, G:0.09, T:0.38
Consensus pattern (54 bp):
CCCTCGAATTGTAAAATTACCAAAGTACCCTCAATTTATAAAATTACAGTTTTA
Found at i:18066300 original size:27 final size:27
Alignment explanation
Indices: 18066220--18066303 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
18066210 AGTACTCTCG
*
18066220 ATTTATAGAATTACAGTTTTACCCTCG
1 ATTTATAGAATTACAGTTTTACCCTCA
18066247 ATTTATAGAATTACCA-TTTTACCCTCA
1 ATTTATAGAATTA-CAGTTTTACCCTCA
* *
18066274 ATTTATAAAATTACTGTTTTACCCTCA
1 ATTTATAGAATTACAGTTTTACCCTCA
18066301 ATT
1 ATT
18066304 GTGAAATTAC
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
26 1 0.02
27 49 0.94
28 2 0.04
ACGTcount: A:0.32, C:0.19, G:0.06, T:0.43
Consensus pattern (27 bp):
ATTTATAGAATTACAGTTTTACCCTCA
Found at i:18066322 original size:26 final size:27
Alignment explanation
Indices: 18066266--18066541 Score: 77
Period size: 27 Copynumber: 10.2 Consensus size: 27
18066256 ATTACCATTT
***
18066266 TACCCTCAATTTATAAAATTACTGTTT
1 TACCCTCAATTTATAAAATTACTGAAA
* *
18066293 TACCCTCAA-TTGTGAAATTACTGAAA
1 TACCCTCAATTTATAAAATTACTGAAA
** ** * *
18066319 TACCC-CTGTAGGATAGAATTAC-CAAA
1 TACCCTCAAT-TTATAAAATTACTGAAA
* * **
18066345 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTC-AATTTATAAAATTACTGAAA
* * **
18066372 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTC-AATTTATAAAATTACTGAAA
** * * *
18066399 TACCACT-GGTTTGTGAAATTACCGAAA
1 TACC-CTCAATTTATAAAATTACTGAAA
* **
18066426 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCAATTTATAAAATTACTGAAA
* *
18066453 TACCC-CTGATTTACAAAATTA-TAGAAA
1 TACCCTC-AATTTATAAAATTACT-GAAA
* * *
18066480 TACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCC-TCAATTTAT-AAAATTACT-GAAA
* * *
18066509 TACCTTTC-GTTTACAAAATTACTGAAA
1 TACC-CTCAATTTATAAAATTACTGAAA
18066536 TACCCT
1 TACCCT
18066542 TGGTTTGTAG
Statistics
Matches: 193, Mismatches: 42, Indels: 29
0.73 0.16 0.11
Matches are distributed among these distances:
25 1 0.01
26 38 0.20
27 128 0.66
28 8 0.04
29 18 0.09
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
TACCCTCAATTTATAAAATTACTGAAA
Found at i:18066378 original size:27 final size:27
Alignment explanation
Indices: 18066335--18066459 Score: 182
Period size: 27 Copynumber: 4.7 Consensus size: 27
18066325 TGTAGGATAG
18066335 AATTACC-AAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
18066361 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
18066388 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
18066415 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
18066442 AATTACCAAAATACCCCT
1 AATTACCAAAATACCCCT
18066460 GATTTACAAA
Statistics
Matches: 87, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
26 10 0.11
27 73 0.84
28 4 0.05
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:18066420 original size:54 final size:54
Alignment explanation
Indices: 18066302--18066456 Score: 190
Period size: 54 Copynumber: 2.9 Consensus size: 54
18066292 TTACCCTCAA
* ** * *
18066302 TTGTGAAATTACTGAAATACCCCT-GTAGGATAGAATTACC-AAATACCCCTAGT
1 TTGTGAAATTACCGAAATACCCCTAGTTTG-TAAAATTACCAAAATACCACTAGT
* * *
18066355 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTGGT
1 TTGTGAAATTACCGAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTAGT
*
18066409 TTGTGAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACC
1 TTGTGAAATTACCGAAATACCCCT-AGTTTGTAAAATTACCAAAATACC
18066457 CCTGATTTAC
Statistics
Matches: 88, Mismatches: 11, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
53 34 0.39
54 54 0.61
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (54 bp):
TTGTGAAATTACCGAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTAGT
Found at i:18066464 original size:27 final size:26
Alignment explanation
Indices: 18066335--18066473 Score: 163
Period size: 27 Copynumber: 5.2 Consensus size: 26
18066325 TGTAGGATAG
18066335 AATTACC-AAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTA-TTTGTAA
18066361 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTA-TTTGTAA
* * *
18066388 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCT-ATTTGTAA
* *
18066415 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCC-CTATTTGTAA
**
18066442 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCCT-ATTTGTAA
18066469 AATTA
1 AATTA
18066474 TAGAAATACC
Statistics
Matches: 97, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
26 8 0.08
27 88 0.91
28 1 0.01
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (26 bp):
AATTACCAAAATACCCCTATTTGTAA
Found at i:18066472 original size:54 final size:55
Alignment explanation
Indices: 18066335--18066485 Score: 184
Period size: 54 Copynumber: 2.8 Consensus size: 55
18066325 TGTAGGATAG
* *
18066335 AATTACC-AAATACCCCT-AGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTGTAAAATTACCGAAATACCCTCTAATTTGTAA
* * *
18066388 AATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTC-AATTTGTAA
1 AATTACCAAAATACCCCTGATTTGTAAAATTACCGAAATACCCTCTAATTTGTAA
** **
18066442 AATTACCAAAATACCCCTGATTTACAAAATTATAGAAATACCCT
1 AATTACCAAAATACCCCTGATTTGTAAAATTACCGAAATACCCT
18066486 TGACTTTCTA
Statistics
Matches: 83, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
53 7 0.08
54 75 0.90
55 1 0.01
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (55 bp):
AATTACCAAAATACCCCTGATTTGTAAAATTACCGAAATACCCTCTAATTTGTAA
Found at i:18066480 original size:27 final size:27
Alignment explanation
Indices: 18066450--18066543 Score: 104
Period size: 27 Copynumber: 3.4 Consensus size: 27
18066440 AAAATTACCA
*
18066450 AAATACCCCTGATTTACAAAATTATAG
1 AAATACCCTTGATTTACAAAATTATAG
18066477 AAATACCCTTGACTTT-CTAAAAATTATAG
1 AAATACCCTTGA-TTTAC--AAAATTATAG
*
18066506 AAATACCTTTCG-TTTACAAAATTACT-G
1 AAATACCCTT-GATTTACAAAATTA-TAG
18066533 AAATACCCTTG
1 AAATACCCTTG
18066544 GTTTGTAGAT
Statistics
Matches: 58, Mismatches: 3, Indels: 13
0.78 0.04 0.18
Matches are distributed among these distances:
26 1 0.02
27 29 0.50
28 7 0.12
29 20 0.34
30 1 0.02
ACGTcount: A:0.40, C:0.19, G:0.07, T:0.33
Consensus pattern (27 bp):
AAATACCCTTGATTTACAAAATTATAG
Found at i:18067495 original size:25 final size:26
Alignment explanation
Indices: 18067436--18067506 Score: 108
Period size: 26 Copynumber: 2.8 Consensus size: 26
18067426 AGGAAGTGCT
*
18067436 AAAAGGGCTATGCCCCAGTTTACCGA
1 AAAAGGGCTTTGCCCCAGTTTACCGA
* *
18067462 AAAAGGGCTTTGCCCTAGTTTATC-A
1 AAAAGGGCTTTGCCCCAGTTTACCGA
18067487 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
18067507 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
25 20 0.49
26 21 0.51
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (26 bp):
AAAAGGGCTTTGCCCCAGTTTACCGA
Found at i:18067519 original size:24 final size:24
Alignment explanation
Indices: 18067436--18067533 Score: 67
Period size: 25 Copynumber: 4.0 Consensus size: 24
18067426 AGGAAGTGCT
* *
18067436 AAAAG-GGCTATGCCCCAGTTTACC
1 AAAAGAGGCTTTGCCCCAG-TTATC
*
18067460 GAAAA-AGGGCTTTGCCCTAGTTTATC
1 -AAAAGA-GGCTTTGCCCCAG-TTATC
*
18067486 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
18067510 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
18067534 ATGATAAAGC
Statistics
Matches: 62, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
24 15 0.24
25 31 0.50
26 16 0.26
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:18070126 original size:27 final size:27
Alignment explanation
Indices: 18070096--18070241 Score: 193
Period size: 27 Copynumber: 5.4 Consensus size: 27
18070086 ATTACCAAAG
18070096 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
18070123 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
18070150 TACCCTCGATTTACATAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
18070177 TACCTTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
** * * * *
18070204 TACCCTTAATTTACAAAATTATCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
18070231 TACCCTCGATT
1 TACCCTCGATT
18070242 GTGAAATTAC
Statistics
Matches: 103, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 103 1.00
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:18070303 original size:27 final size:27
Alignment explanation
Indices: 18070240--18070462 Score: 123
Period size: 27 Copynumber: 8.2 Consensus size: 27
18070230 TTACCCTCGA
*
18070240 TTGTGAAATTACTGAAATACCCCT-GT
1 TTGTAAAATTACTGAAATACCCCTAGT
** *
18070266 AGGATAGAATTACTGAAATACCCCTAGT
1 TTG-TAAAATTACTGAAATACCCCTAGT
** *
18070294 TTGTAAAATTACCAAAATACCACTAGT
1 TTGTAAAATTACTGAAATACCCCTAGT
* ** *
18070321 TTGTGAAATTACCAAAATA-CCCTCAAT
1 TTGTAAAATTACTGAAATACCCCT-AGT
**
18070348 TTGTAAAATTACCAAAATACCCCT-GAT
1 TTGTAAAATTACTGAAATACCCCTAG-T
** * *
18070375 TTACAAAATTA-TAGAAATACCCTTGACT
1 TTGTAAAATTACT-GAAATACCCCT-AGT
* ** *
18070403 TTCTAAAAATTA-TAGAAATACCTTTCGT
1 TTGT-AAAATTACT-GAAATACCCCTAGT
** * *
18070431 TTACAAAATTACTGAAATACCCTTGGT
1 TTGTAAAATTACTGAAATACCCCTAGT
18070458 TTGTA
1 TTGTA
18070463 GATTTACCAA
Statistics
Matches: 155, Mismatches: 32, Indels: 19
0.75 0.16 0.09
Matches are distributed among these distances:
26 4 0.03
27 118 0.76
28 14 0.09
29 19 0.12
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TTGTAAAATTACTGAAATACCCCTAGT
Found at i:18070314 original size:54 final size:53
Alignment explanation
Indices: 18070231--18070372 Score: 137
Period size: 54 Copynumber: 2.7 Consensus size: 53
18070221 ATTATCATTT
* * ** **
18070231 TACCCTCGA-TTGTGAAATTACTGAAATACCCCTGTAGGAT-AGAATTACTGAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGTAGG-TGA-AATTACCAAAA
* * **
18070284 TACCC-CTAGTTTGTAAAATTACCAAAATACCACTAGTTTGTGAAATTACCAAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCCT-GTAGGTGAAATTACCAAAA
18070338 TACCCTCAATTTGTAAAATTACCAAAATACCCCTG
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTG
18070373 ATTTACAAAA
Statistics
Matches: 72, Mismatches: 12, Indels: 10
0.77 0.13 0.11
Matches are distributed among these distances:
52 1 0.01
53 6 0.08
54 60 0.83
55 5 0.07
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (53 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCCTGTAGGTGAAATTACCAAAA
Found at i:18070393 original size:54 final size:56
Alignment explanation
Indices: 18070280--18070453 Score: 139
Period size: 54 Copynumber: 3.2 Consensus size: 56
18070270 TAGAATTACT
* ***
18070280 GAAATACCC-CTAGTTTGTAAAATTACCAAAATACCACTAGTTTGTGAAATTACCA
1 GAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTAGTTTACAAAATTACCA
* *
18070335 -AAATACCCTC-AATTTGTAAAATTACCAAAATACCCCT-GATTTACAAAATTA-TA
1 GAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTAG-TTTACAAAATTACCA
* * * ** * *
18070388 GAAATACCCT-TGACTTTCTAAAAATTA-TAGAAATACCTTTCGTTTACAAAATTA-CT
1 GAAATACCCTCT-AATTTGT-AAAATTACCA-AAATACCACTAGTTTACAAAATTACCA
18070444 GAAATACCCT
1 GAAATACCCT
18070454 TGGTTTGTAG
Statistics
Matches: 98, Mismatches: 13, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
53 2 0.02
54 51 0.52
55 7 0.07
56 37 0.38
57 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.31
Consensus pattern (56 bp):
GAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTAGTTTACAAAATTACCA
Found at i:18071421 original size:25 final size:25
Alignment explanation
Indices: 18071354--18071423 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
18071344 AGGAAGTGCT
* * *
18071354 AAAAGGGCTATGCCCCAATTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
18071379 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
18071404 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
18071424 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:18071436 original size:24 final size:24
Alignment explanation
Indices: 18071379--18071450 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 24
18071369 CAATTTACCG
18071379 AAAAG-GGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTGCCCCAG-TTATC
*
18071403 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
18071427 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
18071451 ATGATAAAGC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
24 19 0.46
25 22 0.54
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:18071694 original size:31 final size:30
Alignment explanation
Indices: 18071643--18071725 Score: 141
Period size: 31 Copynumber: 2.7 Consensus size: 30
18071633 CACTTACAGT
18071643 AAAGGCTTCGGCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCAGTGATATGATTTATGA
18071673 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCC-AGTGATATGATTTATGA
18071704 AAAGGCTTCGGTCCAGT-ATATG
1 AAAGGCTTCGG-CCAGTGATATG
18071726 TCTAGACTGA
Statistics
Matches: 51, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
30 18 0.35
31 31 0.61
32 2 0.04
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (30 bp):
AAAGGCTTCGGCCAGTGATATGATTTATGA
Found at i:18077049 original size:27 final size:27
Alignment explanation
Indices: 18077019--18077223 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
18077009 ATATTGAGTC
* * * *
18077019 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
18077046 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18077073 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
18077101 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
18077128 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
18077155 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18077182 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18077209 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
18077224 GTACAATTTA
Statistics
Matches: 157, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 24 0.15
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:18085342 original size:27 final size:27
Alignment explanation
Indices: 18085312--18085516 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
18085302 ATATTGAGTC
* * * *
18085312 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
18085339 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18085366 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
18085394 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
18085421 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
18085448 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18085475 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18085502 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
18085517 GTACAATTTA
Statistics
Matches: 157, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 24 0.15
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:18091985 original size:30 final size:31
Alignment explanation
Indices: 18091946--18092003 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 31
18091936 TGTCAAATAG
* *
18091946 GGTTTAATTGAAAAATAAA-AAATTATACAT
1 GGTTAAATTGAAAAATAAAGAAAATATACAT
**
18091976 GGTTAAATTGTGAAATAAAGAAAATATA
1 GGTTAAATTGAAAAATAAAGAAAATATA
18092004 GGGCTTGCTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
30 16 0.70
31 7 0.30
ACGTcount: A:0.53, C:0.02, G:0.14, T:0.31
Consensus pattern (31 bp):
GGTTAAATTGAAAAATAAAGAAAATATACAT
Found at i:18092411 original size:39 final size:39
Alignment explanation
Indices: 18092368--18092551 Score: 217
Period size: 39 Copynumber: 4.7 Consensus size: 39
18092358 TTATATAATT
* * *
18092368 ATACCCCTGATCATACTTACGTGACCTTATTGTACTTCG
1 ATACCCCTGATCGTACTTACGTGCCCCTATTGTACTTCG
* * *
18092407 ATACCCCTAATCGTACTTACGTGCCCTTGTTGTACTTCG
1 ATACCCCTGATCGTACTTACGTGCCCCTATTGTACTTCG
* *
18092446 GTACCCCTGATCTTACTTACGTGCCCCTATTGTACTTCG
1 ATACCCCTGATCGTACTTACGTGCCCCTATTGTACTTCG
* * * * * *
18092485 GTACTCCTGATCGCAATTAGGTGCCCCTATTCTACTTCG
1 ATACCCCTGATCGTACTTACGTGCCCCTATTGTACTTCG
*
18092524 ATACCCCTGAAT-GCACTTACGTGCCCCT
1 ATACCCCTG-ATCGTACTTACGTGCCCCT
18092552 GTTATATTTC
Statistics
Matches: 125, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
39 123 0.98
40 2 0.02
ACGTcount: A:0.19, C:0.32, G:0.15, T:0.34
Consensus pattern (39 bp):
ATACCCCTGATCGTACTTACGTGCCCCTATTGTACTTCG
Found at i:18092462 original size:20 final size:21
Alignment explanation
Indices: 18092398--18092496 Score: 70
Period size: 19 Copynumber: 5.0 Consensus size: 21
18092388 GTGACCTTAT
* *
18092398 TGTACTTCGATACCCCTAATC
1 TGTACTTCGGTACCCCTGATC
* *
18092419 -GTACTTAC-GTGCCCTTG-T-
1 TGTACTT-CGGTACCCCTGATC
18092437 TGTACTTCGGTACCCCTGATC
1 TGTACTTCGGTACCCCTGATC
*
18092458 T-TACTTAC-GTGCCCCT-AT-
1 TGTACTT-CGGTACCCCTGATC
*
18092476 TGTACTTCGGTACTCCTGATC
1 TGTACTTCGGTACCCCTGATC
18092497 GCAATTAGGT
Statistics
Matches: 59, Mismatches: 9, Indels: 20
0.67 0.10 0.23
Matches are distributed among these distances:
18 3 0.05
19 27 0.46
20 26 0.44
21 3 0.05
ACGTcount: A:0.16, C:0.31, G:0.16, T:0.36
Consensus pattern (21 bp):
TGTACTTCGGTACCCCTGATC
Found at i:18092572 original size:39 final size:40
Alignment explanation
Indices: 18092382--18092572 Score: 165
Period size: 39 Copynumber: 4.9 Consensus size: 40
18092372 CCCTGATCAT
* * * * *
18092382 ACTTACGTGACCTTATTGTACTTCGATACCCCT-AATCGT
1 ACTTACGTGCCCCTATTATACTTCGATACTCCTGAATCGC
* * * * * **
18092421 ACTTACGTGCCCTTGTTGTACTTCGGTACCCCTG-ATCTT
1 ACTTACGTGCCCCTATTATACTTCGATACTCCTGAATCGC
* *
18092460 ACTTACGTGCCCCTATTGTACTTCGGTACTCCTG-ATCGC
1 ACTTACGTGCCCCTATTATACTTCGATACTCCTGAATCGC
* * * *
18092499 AATTAGGTGCCCCTATTCTACTTCGATACCCCTGAAT-GC
1 ACTTACGTGCCCCTATTATACTTCGATACTCCTGAATCGC
* * *
18092538 ACTTACGTGCCCCTGTTATATTTCAATACTCCTGA
1 ACTTACGTGCCCCTATTATACTTCGATACTCCTGA
18092573 TAACACTTTT
Statistics
Matches: 129, Mismatches: 21, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
39 127 0.98
40 2 0.02
ACGTcount: A:0.19, C:0.30, G:0.15, T:0.35
Consensus pattern (40 bp):
ACTTACGTGCCCCTATTATACTTCGATACTCCTGAATCGC
Found at i:18103001 original size:32 final size:32
Alignment explanation
Indices: 18102965--18103026 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
18102955 CAACTAACCA
* *
18102965 ATGAGTTA-TCAAATTAAATTAATTAATTTATC
1 ATGAGTTACT-AAATTAAAGTAATCAATTTATC
*
18102997 ATGAGTTACTAAATTCAAGTAATCAATTTA
1 ATGAGTTACTAAATTAAAGTAATCAATTTA
18103027 ATCAATTTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 25 0.96
33 1 0.04
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (32 bp):
ATGAGTTACTAAATTAAAGTAATCAATTTATC
Found at i:18103217 original size:17 final size:17
Alignment explanation
Indices: 18103185--18103217 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
18103175 CACATGAAAT
18103185 ATAATCATTTTATTAAA
1 ATAATCATTTTATTAAA
18103202 ATAAT-ATTTTAGTTAA
1 ATAATCATTTTA-TTAA
18103218 GATCATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (17 bp):
ATAATCATTTTATTAAA
Found at i:18103426 original size:22 final size:22
Alignment explanation
Indices: 18103375--18103427 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
18103365 AGTGAAAATA
*
18103375 TTTTATTTTTTATAAATTGAAC
1 TTTTATTTTTTATAAATTAAAC
* * *
18103397 TATAATTTTATTATATA-TAAAC
1 TTTTATTTT-TTATAAATTAAAC
18103419 TTTTATTTT
1 TTTTATTTT
18103428 CACCATTTAT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
22 18 0.75
23 6 0.25
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (22 bp):
TTTTATTTTTTATAAATTAAAC
Found at i:18112649 original size:21 final size:22
Alignment explanation
Indices: 18112625--18112665 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
18112615 ATTTTCAGTA
*
18112625 AATTT-AATCTGTTAAAATTTG
1 AATTTAAATCCGTTAAAATTTG
18112646 AATTTAAATCCGTTAAAATT
1 AATTTAAATCCGTTAAAATT
18112666 CTTTCTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.44
Consensus pattern (22 bp):
AATTTAAATCCGTTAAAATTTG
Found at i:18113867 original size:11 final size:11
Alignment explanation
Indices: 18113851--18113875 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
18113841 TAAATAATTT
18113851 TAATTTTTTTA
1 TAATTTTTTTA
18113862 TAATTTTTTTA
1 TAATTTTTTTA
18113873 TAA
1 TAA
18113876 CAGTCTGTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TAATTTTTTTA
Found at i:18115383 original size:18 final size:18
Alignment explanation
Indices: 18115360--18115401 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
18115350 GCCAAGTGCA
* *
18115360 TATCCTAGCCCTTTTATG
1 TATCCTAACCCTTATATG
18115378 TATCCTAACCCTTATATG
1 TATCCTAACCCTTATATG
*
18115396 TTTCCT
1 TATCCT
18115402 TTTCCCAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.19, C:0.29, G:0.07, T:0.45
Consensus pattern (18 bp):
TATCCTAACCCTTATATG
Found at i:18117444 original size:21 final size:21
Alignment explanation
Indices: 18117418--18117475 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
18117408 TGCAGGGCTC
*
18117418 ACACGCCCGTATGGCCAAAAG
1 ACACGCCCGTATGACCAAAAG
* *
18117439 ACACGCCCTTATGACCAAAGG
1 ACACGCCCGTATGACCAAAAG
* *
18117460 ACACACCCGTGTGACC
1 ACACGCCCGTATGACC
18117476 CTATGACATG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.31, C:0.36, G:0.21, T:0.12
Consensus pattern (21 bp):
ACACGCCCGTATGACCAAAAG
Found at i:18119181 original size:48 final size:48
Alignment explanation
Indices: 18119105--18119328 Score: 299
Period size: 48 Copynumber: 4.7 Consensus size: 48
18119095 CATACCCTAG
* * *
18119105 GTGCGAATATCATGGCCAGAGGCCAAATCAATG-AAGCTCGCACCCGAA
1 GTGCTAATATCATGGCCCGAAGCCAAATCAATGTAA-CTCGCACCCGAA
* * * *
18119153 GTGCTAATATCATGGCTCGAAGCTAAATCAATGTAACTTGTACCCGAA
1 GTGCTAATATCATGGCCCGAAGCCAAATCAATGTAACTCGCACCCGAA
* *
18119201 GTGCTAATATCATGGCTCGAAGCCAAATCAATGTAACTCGCACCTGAA
1 GTGCTAATATCATGGCCCGAAGCCAAATCAATGTAACTCGCACCCGAA
* *
18119249 GTGCTAATAGT-ATGGCCCGAAGCCAAATCAATGTAACTCACACCCAAA
1 GTGCTAATA-TCATGGCCCGAAGCCAAATCAATGTAACTCGCACCCGAA
* *
18119297 GTGCTAATATCATGCCCCGAAGCCAATTCAAT
1 GTGCTAATATCATGGCCCGAAGCCAAATCAAT
18119329 AAAGATCCTA
Statistics
Matches: 156, Mismatches: 17, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
47 1 0.01
48 152 0.97
49 3 0.02
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.21
Consensus pattern (48 bp):
GTGCTAATATCATGGCCCGAAGCCAAATCAATGTAACTCGCACCCGAA
Found at i:18127742 original size:26 final size:26
Alignment explanation
Indices: 18127713--18127820 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
18127703 TGGTACAAAT
18127713 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
18127739 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
18127765 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
18127791 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
18127817 TGAT
1 TGAT
18127821 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:18129484 original size:27 final size:27
Alignment explanation
Indices: 18129445--18129582 Score: 163
Period size: 27 Copynumber: 5.1 Consensus size: 27
18129435 AAGCGTCCTA
* *
18129445 GTGGCTATGCCACAATTATCTAATCTG
1 GTGGCTCTGCCACAATTATCTGATCTG
* *
18129472 GTGGCTCTACCAC-ATATATCTGTTCTG
1 GTGGCTCTGCCACAAT-TATCTGATCTG
* *
18129499 GTGGCTATGCCACGATTATCTGATCTG
1 GTGGCTCTGCCACAATTATCTGATCTG
* *
18129526 GTGGCTCTGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCACAATTATCTGATCTG
*
18129553 GTGGCTCTACCACAA-TATCTGTATCTG
1 GTGGCTCTGCCACAATTATCTG-ATCTG
18129580 GTG
1 GTG
18129583 ACTTCGTCAC
Statistics
Matches: 95, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
26 8 0.08
27 85 0.89
28 2 0.02
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (27 bp):
GTGGCTCTGCCACAATTATCTGATCTG
Found at i:18129527 original size:54 final size:53
Alignment explanation
Indices: 18129445--18129582 Score: 195
Period size: 54 Copynumber: 2.5 Consensus size: 53
18129435 AAGCGTCCTA
* *
18129445 GTGGCTATGCCACAATTATCTAATCTGGTGGCTCTACCACATATATCTGTTCTG
1 GTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTACCACAAATATCTGTTCTG
*
18129499 GTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACAAATATCTGTTCTG
1 GTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTACCACAAATATCTGTTCTG
* * *
18129553 GTGGCTCTACCACAATATCTGTATCTGGTG
1 GTGGCTATGCCACATTATCTG-ATCTGGTG
18129583 ACTTCGTCAC
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
53 7 0.09
54 69 0.91
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (53 bp):
GTGGCTATGCCACATTATCTGATCTGGTGGCTCTACCACAAATATCTGTTCTG
Found at i:18134918 original size:25 final size:26
Alignment explanation
Indices: 18134837--18134963 Score: 187
Period size: 26 Copynumber: 5.2 Consensus size: 26
18134827 TGGTACAAAT
18134837 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
18134863 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
18134889 TGATAATGGGTTAGGTAAAT-TTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
18134914 TGATAAT-GG-T---TAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
18134935 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
18134960 TGAT
1 TGAT
18134964 GGGATTTCAT
Statistics
Matches: 93, Mismatches: 3, Indels: 11
0.87 0.03 0.10
Matches are distributed among these distances:
20 5 0.05
21 14 0.15
22 1 0.01
23 1 0.01
24 2 0.02
25 27 0.29
26 43 0.46
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:18134959 original size:46 final size:49
Alignment explanation
Indices: 18134837--18134963 Score: 190
Period size: 46 Copynumber: 2.6 Consensus size: 49
18134827 TGGTACAAAT
18134837 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGA-T--GTAAATATTCCA
*
18134889 TGATAATGGGTTAGGTAAAT-TTCCATGATAATGG-T-TAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATGTAAATATTCCA
18134935 TGATAAT-GGTTAGGTAAATGTTCCATGAT
1 TGATAATGGGTTAGGTAAATGTTCCATGAT
18134964 GGGATTTCAT
Statistics
Matches: 73, Mismatches: 1, Indels: 8
0.89 0.01 0.10
Matches are distributed among these distances:
45 12 0.16
46 26 0.36
49 1 0.01
51 14 0.19
52 20 0.27
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.36
Consensus pattern (49 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATGTAAATATTCCA
Found at i:18136439 original size:28 final size:26
Alignment explanation
Indices: 18136394--18136467 Score: 87
Period size: 26 Copynumber: 2.8 Consensus size: 26
18136384 TAAAAGAGCT
* *
18136394 AAATTACT-TAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-ATGCA
*
18136421 AAATTACTGTTATACCCCTAGGTGCA
1 AAATTACTGTTATACCCCTAGATGCA
*
18136447 AAATTACCGTTATACCCCTAG
1 AAATTACTGTTATACCCCTAG
18136468 GGTTAATTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 23 0.55
27 9 0.21
28 10 0.24
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.31
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGATGCA
Found at i:18136654 original size:54 final size:53
Alignment explanation
Indices: 18136572--18136712 Score: 237
Period size: 54 Copynumber: 2.6 Consensus size: 53
18136562 AGGAAGCGTC
18136572 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
18136626 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
18136680 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
18136713 ACTTCGTCAC
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
53 7 0.08
54 76 0.92
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:18136723 original size:27 final size:27
Alignment explanation
Indices: 18136572--18136730 Score: 193
Period size: 27 Copynumber: 5.9 Consensus size: 27
18136562 AGGAAGCGTC
*
18136572 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
18136599 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
* *
18136626 CTGGTGGCTATGCCACGATTATCTG-AT
1 CTGGTGGCTCTGCCAC-AATATCTGTAT
18136653 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
18136680 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
18136707 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
18136731 GCAGCCTCGC
Statistics
Matches: 117, Mismatches: 7, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
26 10 0.09
27 105 0.90
28 2 0.02
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:18138645 original size:28 final size:28
Alignment explanation
Indices: 18138614--18138669 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
18138604 TTTCTAATTA
* * *
18138614 AATTTAATTTTAATCCTTTTTATATTTT
1 AATTTAATTTAAATACTTTATATATTTT
*
18138642 AATTTACTTTAAATACTTTATATATTTT
1 AATTTAATTTAAATACTTTATATATTTT
18138670 TTAAATATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (28 bp):
AATTTAATTTAAATACTTTATATATTTT
Found at i:18138754 original size:11 final size:11
Alignment explanation
Indices: 18138714--18138775 Score: 52
Period size: 13 Copynumber: 5.2 Consensus size: 11
18138704 CTATTTTTTA
*
18138714 TTATCATATATT
1 TTATTATATA-T
*
18138726 TTATCTATAAAT
1 TTAT-TATATAT
18138738 TATATTATATAT
1 T-TATTATATAT
18138750 TTATTTTATATAT
1 TTA--TTATATAT
*
18138763 TTCTTATATAT
1 TTATTATATAT
18138774 TT
1 TT
18138776 TTTAAATTGT
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
11 12 0.29
12 13 0.31
13 17 0.40
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (11 bp):
TTATTATATAT
Found at i:18138921 original size:9 final size:9
Alignment explanation
Indices: 18138907--18138963 Score: 51
Period size: 9 Copynumber: 5.8 Consensus size: 9
18138897 CCTTTTCTTA
18138907 TTATATATT
1 TTATATATT
*
18138916 TTATATGTATA
1 TTATA--TATT
*
18138927 TTATTTATT
1 TTATATATT
18138936 TTATATTATAT
1 TTATA-TAT-T
18138947 GTTATATATT
1 -TTATATATT
18138957 TTATATA
1 TTATATA
18138964 CTATGTTTCT
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
9 19 0.49
10 4 0.10
11 11 0.28
12 5 0.13
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (9 bp):
TTATATATT
Found at i:18138956 original size:21 final size:21
Alignment explanation
Indices: 18138907--18138970 Score: 80
Period size: 21 Copynumber: 3.1 Consensus size: 21
18138897 CCTTTTCTTA
18138907 TTATATATTTTATATGTATA--
1 TTATATATTTTATAT-TATATG
*
18138927 TTATTTATTTTATATTATATG
1 TTATATATTTTATATTATATG
18138948 TTATATATTTTATA-TACTATG
1 TTATATATTTTATATTA-TATG
18138969 TT
1 TT
18138971 TCTATATGTA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
19 4 0.10
20 16 0.41
21 19 0.49
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62
Consensus pattern (21 bp):
TTATATATTTTATATTATATG
Found at i:18141150 original size:88 final size:89
Alignment explanation
Indices: 18141001--18141177 Score: 338
Period size: 88 Copynumber: 2.0 Consensus size: 89
18140991 GTCAGATTAT
*
18141001 ACTCGTATTAGTGTCACACAGAATAATTTCCAAGAGCTTAAGGAAATTTGGGATCAATGAGGCAA
1 ACTCGTATTAGTGTCACACAGAATAATCTCCAAGAGCTTAAGGAAATTTGGGATCAATGAGGCAA
18141066 T-AGACCAAGCAATTATTCTACGA
66 TGAGACCAAGCAATTATTCTACGA
18141089 ACTCGTATTAGTGTCACACAGAATAATCTCCAAGAGCTTAAGGAAATTTGGGATCAATGAGGCAA
1 ACTCGTATTAGTGTCACACAGAATAATCTCCAAGAGCTTAAGGAAATTTGGGATCAATGAGGCAA
18141154 TGAGACCAAGCAATTATTCTACGA
66 TGAGACCAAGCAATTATTCTACGA
18141178 TAATTACGGA
Statistics
Matches: 87, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
88 65 0.75
89 22 0.25
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (89 bp):
ACTCGTATTAGTGTCACACAGAATAATCTCCAAGAGCTTAAGGAAATTTGGGATCAATGAGGCAA
TGAGACCAAGCAATTATTCTACGA
Found at i:18142043 original size:94 final size:94
Alignment explanation
Indices: 18141882--18142069 Score: 360
Period size: 94 Copynumber: 2.0 Consensus size: 94
18141872 GGAATCTACA
18141882 GTCGGAGGATGTTGAGTGGAGAGCTCCATGGATGGTTCCTGGAGAGATACTTTATCGATGCGGCA
1 GTCGGAGGATGTTGAGTGGAGAGCTCCATGGATGGTTCCTGGAGAGATACTTTATCGATGCGGCA
18141947 GCTTTGATTGGGTTCCCCTGTTGGGAATT
66 GCTTTGATTGGGTTCCCCTGTTGGGAATT
18141976 GTCGGA-GATGTTGAGTGGAGAGCTCCATGGATTGGTTCCTGGAGAGATACTTTATCGATGCGGC
1 GTCGGAGGATGTTGAGTGGAGAGCTCCATGGA-TGGTTCCTGGAGAGATACTTTATCGATGCGGC
18142040 AGCTTTGATTGGGTTCCCCTGTTGGGAATT
65 AGCTTTGATTGGGTTCCCCTGTTGGGAATT
18142070 TTGGGGTGCC
Statistics
Matches: 93, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
93 25 0.27
94 68 0.73
ACGTcount: A:0.18, C:0.16, G:0.35, T:0.31
Consensus pattern (94 bp):
GTCGGAGGATGTTGAGTGGAGAGCTCCATGGATGGTTCCTGGAGAGATACTTTATCGATGCGGCA
GCTTTGATTGGGTTCCCCTGTTGGGAATT
Found at i:18143201 original size:92 final size:93
Alignment explanation
Indices: 18143057--18143242 Score: 365
Period size: 92 Copynumber: 2.0 Consensus size: 93
18143047 ATCATATGCA
18143057 TTCAAAGTTATAGAAAGACCCTAATTAGTTAAAGTTTACTTCCAGAGAGAGA-GTAGAAAAGAAA
1 TTCAAAGTTATAGAAAGACCCTAATTAGTTAAAGTTTACTTCCAGAGAGAGAGGTAGAAAAGAAA
18143121 ATCTGGAAATCACACATCCTTACGGCAC
66 ATCTGGAAATCACACATCCTTACGGCAC
18143149 TTCAAAGTTATAGAAAGACCCTAATTAGTTAAAGTTTACTTCCAGAGAGAGAGGTAGAAAAGAAA
1 TTCAAAGTTATAGAAAGACCCTAATTAGTTAAAGTTTACTTCCAGAGAGAGAGGTAGAAAAGAAA
18143214 ATCTGGAAATCACACATCCTTACGGCAC
66 ATCTGGAAATCACACATCCTTACGGCAC
18143242 T
1 T
18143243 CACACTAAAA
Statistics
Matches: 93, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
92 52 0.56
93 41 0.44
ACGTcount: A:0.41, C:0.17, G:0.18, T:0.24
Consensus pattern (93 bp):
TTCAAAGTTATAGAAAGACCCTAATTAGTTAAAGTTTACTTCCAGAGAGAGAGGTAGAAAAGAAA
ATCTGGAAATCACACATCCTTACGGCAC
Found at i:18151507 original size:206 final size:205
Alignment explanation
Indices: 18151145--18151700 Score: 891
Period size: 206 Copynumber: 2.7 Consensus size: 205
18151135 ACAGATCTGG
* * *
18151145 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAATGAACAAATC-AAAGACATAGC
1 CTGAAGC-AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAA-TCATAGC
*
18151209 TGATTTGGCTTTCATGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
64 TGATTTGGCTTTCACGTGCTTAC-ATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
* * *
18151274 GAGAGCAGATCGAAGTTTGGCGTCTCCATATTCGACTGAGGGCAGACACATAGCAGATCTAACCT
128 GAGAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCT
18151339 TCAGATGATTAGA
193 TCAGATGATTAGA
18151352 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAATCATAGCTG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAATCATAGCTG
* *
18151417 ATTTAGCTTTCACGTGCTTACACTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACA-TGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
*
18151482 GAACAAATCGAAGTTTGGTGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
130 GAACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
18151547 AGATGATTAGA
195 AGATGATTAGA
* * * *
18151558 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGTTTACAAGGAGCAAATCG-AATACATAGTT
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAAT-CATAGCT
* * *
18151622 GATTTGGTTTTCGCGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
65 GATTTGGCTTTCACGTGCTTAC-ATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
18151687 AGAACAAATCGAAG
129 AGAACAAATCGAAG
18151701 AAGCAGATTT
Statistics
Matches: 326, Mismatches: 19, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
205 4 0.01
206 312 0.96
207 10 0.03
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (205 bp):
CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAATCATAGCTG
ATTTGGCTTTCACGTGCTTACATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAG
AACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCA
GATGATTAGA
Found at i:18153333 original size:17 final size:17
Alignment explanation
Indices: 18153313--18153346 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
18153303 TATATTACTA
18153313 TTATTATCCAT-TATTTT
1 TTATTAT-CATATATTTT
18153330 TTATTATCATATATTTT
1 TTATTATCATATATTTT
18153347 ATCTATAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.19
17 13 0.81
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATTATCATATATTTT
Found at i:18153378 original size:12 final size:12
Alignment explanation
Indices: 18153356--18153385 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
18153346 TATCTATAAA
18153356 TTATATTATATT
1 TTATATTATATT
18153368 TTATATTATATT
1 TTATATTATATT
18153380 TTATAT
1 TTATAT
18153386 ATTTCTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
TTATATTATATT
Found at i:18153932 original size:21 final size:19
Alignment explanation
Indices: 18153882--18153933 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 19
18153872 TGCAAAATAC
18153882 TTATTATATTTTTATTATTT
1 TTATTATATTTTTATTA-TT
18153902 TATATTATATTTCCTTA-TATT
1 T-TATTATATTT--TTATTATT
18153923 TTATTCATATT
1 TTATT-ATATT
18153934 ATATTATTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
20 5 0.18
21 18 0.64
22 2 0.07
23 3 0.11
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (19 bp):
TTATTATATTTTTATTATT
Found at i:18159363 original size:57 final size:57
Alignment explanation
Indices: 18159268--18159404 Score: 202
Period size: 57 Copynumber: 2.4 Consensus size: 57
18159258 ATCACATAAC
* * *
18159268 AGGATTACCAGTCCAGGCTAATTCCTGTCTCCAGCATATGCTCACAAGAGCTTAATT
1 AGGATTACCAGTCCAGGCTAAATCCTGTCTCCAACATATGCTCACAAGAGCTCAATT
* * ** *
18159325 AGGATTACCAGTCCAAGCTAAATCCTTTCTGTAACATATGCTCAGAAGAGCTCAATT
1 AGGATTACCAGTCCAGGCTAAATCCTGTCTCCAACATATGCTCACAAGAGCTCAATT
18159382 AGGATTACCAGTCCAGGCTAAAT
1 AGGATTACCAGTCCAGGCTAAAT
18159405 TCTAATTGTA
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 71 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (57 bp):
AGGATTACCAGTCCAGGCTAAATCCTGTCTCCAACATATGCTCACAAGAGCTCAATT
Found at i:18166707 original size:125 final size:125
Alignment explanation
Indices: 18166347--18166744 Score: 568
Period size: 125 Copynumber: 3.2 Consensus size: 125
18166337 AAGGCCAAAT
* * *
18166347 AGGAACTATTGTAGAAAAAGAGCGTCCACGTGAGAGCTTTTTTCAGTAATTTTGCTAATAGTGCA
1 AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCA
* * *
18166412 TCCTGCTTGAAGCGCTTTTGACACTATTTTTCAGAATCGTCTTCTCAAAATTATTTTTTC
66 TCCTGCTTGAAGCGTTTTTAACACTATTTTTCAGAATCGTCTTTTCAAAATTATTTTTTC
* * * *
18166472 AAGAACTACTGTAGAAAAATAGCATCCACGTGGGAGCTTTTTTCAGTAATTTTGTTAACAGTGCA
1 AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCA
18166537 TCCTGCTTGAAGCGTTTTTGAA-ACTATTTTTCAGAATCGTCTTTTCAAAATTATTTTTTC
66 TCCTGCTTGAAGCGTTTTT-AACACTATTTTTCAGAATCGTCTTTTCAAAATTATTTTTTC
*
18166597 AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGGAGCTTTTTTCAATAATTTTGCTAACAGTGC
1 AGGAACTACTGTAGAAAAAGAGCGTCCACGT-GGGAGCTTTTTTCAGTAATTTTGCTAACAGTGC
* * * *
18166662 ATCCTGCTTGAAGCGTTTTTAACATTATCTTTTCA-AAAC-TATTTTCTTAAAATTAATTTTTC
65 ATCCTGCTTGAAGCGTTTTTAACACTAT-TTTTCAGAATCGTCTTTTC--AAAATTATTTTTTC
* * *
18166724 TGAAACTACTATAGAAAAAGA
1 AGGAACTACTGTAGAAAAAGA
18166745 CAAAATCCTT
Statistics
Matches: 245, Mismatches: 22, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
125 149 0.61
126 59 0.24
127 37 0.15
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.37
Consensus pattern (125 bp):
AGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGCA
TCCTGCTTGAAGCGTTTTTAACACTATTTTTCAGAATCGTCTTTTCAAAATTATTTTTTC
Found at i:18166842 original size:34 final size:33
Alignment explanation
Indices: 18166802--18166929 Score: 121
Period size: 34 Copynumber: 3.7 Consensus size: 33
18166792 CACAAAATTA
*
18166802 TTAAAAAAACTAAACCCTAATTTAATTAATTTT
1 TTAAAAAATCTAAACCCTAATTTAATTAATTTT
* * *
18166835 CTTAAAAACTCTAAACTCTAATTTAATTCATTTAT
1 -TTAAAAAATCTAAACCCTAATTTAATTAATTT-T
*** * *
18166870 TTAAAACCCCTAAAGCTTAATTTAATTAATTTTTT
1 TTAAAAAATCTAAACCCTAATTTAATTAA--TTTT
*
18166905 TTAAAAAACTCTAAACTCTAATTTA
1 TTAAAAAA-TCTAAACCCTAATTTA
18166930 TTTTTTAAAA
Statistics
Matches: 74, Mismatches: 16, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
34 51 0.69
35 8 0.11
36 15 0.20
ACGTcount: A:0.43, C:0.15, G:0.01, T:0.41
Consensus pattern (33 bp):
TTAAAAAATCTAAACCCTAATTTAATTAATTTT
Found at i:18168121 original size:55 final size:55
Alignment explanation
Indices: 18168062--18168174 Score: 226
Period size: 55 Copynumber: 2.1 Consensus size: 55
18168052 TTAAAAATTC
18168062 AAATCCTCAAAATTCTTTTGGTTAAAAACAAAAGTTTAGCGACTCATGTTTAGAG
1 AAATCCTCAAAATTCTTTTGGTTAAAAACAAAAGTTTAGCGACTCATGTTTAGAG
18168117 AAATCCTCAAAATTCTTTTGGTTAAAAACAAAAGTTTAGCGACTCATGTTTAGAG
1 AAATCCTCAAAATTCTTTTGGTTAAAAACAAAAGTTTAGCGACTCATGTTTAGAG
18168172 AAA
1 AAA
18168175 GTACAAATAA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 58 1.00
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.32
Consensus pattern (55 bp):
AAATCCTCAAAATTCTTTTGGTTAAAAACAAAAGTTTAGCGACTCATGTTTAGAG
Found at i:18168328 original size:14 final size:13
Alignment explanation
Indices: 18168305--18168349 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 13
18168295 TTTATCTCCC
18168305 AAAATAAATATAT
1 AAAATAAATATAT
18168318 AAAATTAAATATAT
1 AAAA-TAAATATAT
* *
18168332 ATATATATATATAT
1 A-AAATAAATATAT
18168346 AAAA
1 AAAA
18168350 GGAAAAGAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
13 6 0.22
14 19 0.70
15 2 0.07
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
AAAATAAATATAT
Found at i:18170054 original size:195 final size:196
Alignment explanation
Indices: 18169722--18170111 Score: 550
Period size: 195 Copynumber: 2.0 Consensus size: 196
18169712 CCTCCAGAGT
* * *
18169722 TCAAGACACTAGCAATTAATTCTATTTTCGAAATTCGTCGCTTGCCTACCTGACTGGACCAGAAA
1 TCAAGACACTAGCAATTAATTCTATTTTCGAAATTCATCACTTGCCTACCTGACGGGACCAGAAA
* * *
18169787 AGTTATTTCATCAGTCGAAATTAATAGTTTCAGAACTAGACCGAGAACCAATCAATGTACTGGTC
66 AGTTATTTCATCAATCGAAATCAATAGTTTCAGAACTAGACCGAGAACCAATCAAGGTACTGGTC
* * *
18169852 TAAATATATGGGTTGAACCGATTGACCCGCGAATCGATATAGACCGATTAAACTAAGTTA-AAAA
131 TAAATATATGGGTTGAACCAATTGACCCGCGAATCGATACAAACCGATTAAACTAAGTTAGAAAA
18169916 G
196 G
** * * * *
18169917 TCAAGACACTAGTGATTAATTCTATTTTTGAACTTCATCACTTGCCTACTTGACGGGACTAGAAA
1 TCAAGACACTAGCAATTAATTCTATTTTCGAAATTCATCACTTGCCTACCTGACGGGACCAGAAA
* * * * *
18169982 AGTTATTTCATTAATCGAAATCAATATTTTTAGAACTAGACCGATAACCAATCAAGGTATTGGT-
66 AGTTATTTCATCAATCGAAATCAATAGTTTCAGAACTAGACCGAGAACCAATCAAGGTACTGGTC
* * *
18170046 TCAAATATATGGGTTGAATCAATTGACCCGCGAATCGATACAAACCGATTGATCTAAGTTAGAAA
131 T-AAATATATGGGTTGAACCAATTGACCCGCGAATCGATACAAACCGATTAAACTAAGTTAGAAA
18170111 A
195 A
18170112 ACCAATTGAA
Statistics
Matches: 170, Mismatches: 23, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
194 1 0.01
195 165 0.97
196 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (196 bp):
TCAAGACACTAGCAATTAATTCTATTTTCGAAATTCATCACTTGCCTACCTGACGGGACCAGAAA
AGTTATTTCATCAATCGAAATCAATAGTTTCAGAACTAGACCGAGAACCAATCAAGGTACTGGTC
TAAATATATGGGTTGAACCAATTGACCCGCGAATCGATACAAACCGATTAAACTAAGTTAGAAAA
G
Found at i:18176416 original size:27 final size:27
Alignment explanation
Indices: 18176385--18176438 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
18176375 TATTTTACTT
*
18176385 AGTTTAAAATCTTAGTTTTTAATCACC
1 AGTTTAAAATCCTAGTTTTTAATCACC
18176412 AGTTTAAAATCCTAGTTTTTAATCACC
1 AGTTTAAAATCCTAGTTTTTAATCACC
18176439 CTTTTCAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.33, C:0.17, G:0.07, T:0.43
Consensus pattern (27 bp):
AGTTTAAAATCCTAGTTTTTAATCACC
Found at i:18183297 original size:25 final size:25
Alignment explanation
Indices: 18183269--18183328 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 25
18183259 AAATTTTCTC
18183269 CTAA-ATTTTAATTTTAGTGAATTAT
1 CTAATATTTTAA-TTTAGTGAATTAT
* *
18183294 CTAATTTTTTAATTTATTGAATTAT
1 CTAATATTTTAATTTAGTGAATTAT
18183319 -TAATATTTTA
1 CTAATATTTTA
18183329 TATTAATTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 9 0.29
25 16 0.52
26 6 0.19
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (25 bp):
CTAATATTTTAATTTAGTGAATTAT
Found at i:18183341 original size:25 final size:25
Alignment explanation
Indices: 18183288--18183341 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
18183278 AATTTTAGTG
* * *
18183288 AATTATCTAATTTTTTAATTTATTG
1 AATTATCTAATATTTTAATTAATTA
18183313 AATTAT-TAATATTTTATATTAATTA
1 AATTATCTAATATTTTA-ATTAATTA
18183338 AATT
1 AATT
18183342 TTGGAGAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 9 0.36
25 16 0.64
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (25 bp):
AATTATCTAATATTTTAATTAATTA
Found at i:18209845 original size:8 final size:8
Alignment explanation
Indices: 18209832--18209858 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
18209822 CACAGCCTCT
18209832 TACAATCC
1 TACAATCC
18209840 TACAATCC
1 TACAATCC
18209848 TACAATCC
1 TACAATCC
18209856 TAC
1 TAC
18209859 CATTTTGGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.37, C:0.37, G:0.00, T:0.26
Consensus pattern (8 bp):
TACAATCC
Found at i:18211755 original size:27 final size:27
Alignment explanation
Indices: 18211724--18211874 Score: 178
Period size: 27 Copynumber: 5.6 Consensus size: 27
18211714 TAAATTGTAC
18211724 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
18211751 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
18211777 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
18211805 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
18211833 AGCACTAAGTGTGCGATTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
18211860 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
18211875 GACTCAATAT
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
27 82 0.78
28 23 0.22
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:18211838 original size:82 final size:81
Alignment explanation
Indices: 18211725--18211874 Score: 230
Period size: 82 Copynumber: 1.8 Consensus size: 81
18211715 AAATTGTACA
*
18211725 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATAT-ATAGCACTAAGTG
18211789 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** * *
18211806 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATATAGCACTGAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATATAGCACTAAGTG
18211871 TGCG
65 TGCG
18211875 GACTCAATAT
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 17 0.27
82 45 0.73
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATATAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:18212847 original size:18 final size:18
Alignment explanation
Indices: 18212824--18212862 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
18212814 TTAACCAGAG
18212824 ATAATTAGGGGTCGTACC
1 ATAATTAGGGGTCGTACC
18212842 ATAATTAGGGGTCGTACC
1 ATAATTAGGGGTCGTACC
18212860 ATA
1 ATA
18212863 TATGTACAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (18 bp):
ATAATTAGGGGTCGTACC
Done.