Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 6 of 362
Found at i:2013572 original size:26 final size:26
Alignment explanation
Indices: 2013516--2013575 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
2013506 ATATTAAATT
2013516 TATTTTAATGTGTAATTTAATACATA
1 TATTTTAATGTGTAATTTAATACATA
* * **
2013542 AATTTTAAT-TTTAATTTAATTATGTA
1 TATTTTAATGTGTAATTTAA-TACATA
2013568 TATTTTAA
1 TATTTTAA
2013576 GAAATAAATA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
25 9 0.32
26 19 0.68
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.55
Consensus pattern (26 bp):
TATTTTAATGTGTAATTTAATACATA
Found at i:2013715 original size:30 final size:31
Alignment explanation
Indices: 2013672--2013736 Score: 87
Period size: 30 Copynumber: 2.1 Consensus size: 31
2013662 ATTGTGTTAA
* * *
2013672 TAATTTATAAAAATTAAATAAAATTAAAATT
1 TAATGTATAAAAATCAAACAAAATTAAAATT
*
2013703 TAATGTAT-AAAATCACACAAAATTAAAATT
1 TAATGTATAAAAATCAAACAAAATTAAAATT
2013733 TAAT
1 TAAT
2013737 CCATTAATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 23 0.77
31 7 0.23
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (31 bp):
TAATGTATAAAAATCAAACAAAATTAAAATT
Found at i:2020072 original size:16 final size:15
Alignment explanation
Indices: 2020046--2020077 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
2020036 CGTGCGTTTA
2020046 CTGAAAAGAACAATG
1 CTGAAAAGAACAATG
2020061 CTGAAGAAGAACAATG
1 CTGAA-AAGAACAATG
2020077 C
1 C
2020078 AATGAAGACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.50, C:0.16, G:0.22, T:0.12
Consensus pattern (15 bp):
CTGAAAAGAACAATG
Found at i:2020150 original size:6 final size:6
Alignment explanation
Indices: 2020139--2020174 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
2020129 AGAATCGTCC
2020139 ATTTGG ATTTGG ATTTGG ATTTGG ATTTGG ATTTGG
1 ATTTGG ATTTGG ATTTGG ATTTGG ATTTGG ATTTGG
2020175 TTAAGGGAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.17, C:0.00, G:0.33, T:0.50
Consensus pattern (6 bp):
ATTTGG
Found at i:2021200 original size:13 final size:12
Alignment explanation
Indices: 2021182--2021241 Score: 57
Period size: 13 Copynumber: 4.8 Consensus size: 12
2021172 AAAAACATTA
2021182 AAATTAATTAAAT
1 AAATTAATT-AAT
*
2021195 AAATTATTTAAT
1 AAATTAATTAAT
** *
2021207 TTATTACTGTAAT
1 AAATTAAT-TAAT
2021220 AAATTAATTAAT
1 AAATTAATTAAT
2021232 AAATTTAATT
1 AAA-TTAATT
2021242 TCATTCTGAA
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
12 15 0.39
13 23 0.61
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (12 bp):
AAATTAATTAAT
Found at i:2021212 original size:25 final size:25
Alignment explanation
Indices: 2021184--2021231 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
2021174 AAACATTAAA
*
2021184 ATTAAT-TAAATAAATTATTTAATTT
1 ATTAATGT-AATAAATTAATTAATTT
*
2021209 ATTACTGTAATAAATTAATTAAT
1 ATTAATGTAATAAATTAATTAAT
2021232 AAATTTAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 19 0.95
26 1 0.05
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (25 bp):
ATTAATGTAATAAATTAATTAATTT
Found at i:2021371 original size:14 final size:15
Alignment explanation
Indices: 2021334--2021365 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
2021324 TCTACAAAAC
2021334 TTAAA-AAATCATGT
1 TTAAATAAATCATGT
2021348 TTAAATAAATCATGT
1 TTAAATAAATCATGT
2021363 TTA
1 TTA
2021366 GTAAATAAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (15 bp):
TTAAATAAATCATGT
Found at i:2025260 original size:18 final size:19
Alignment explanation
Indices: 2025216--2025262 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
2025206 ATATGTCACT
2025216 TTAACAAATA-ATTTAAAAG
1 TTAA-AAATATATTTAAAAG
* *
2025235 TTATAAATATATTTTAAA-
1 TTAAAAATATATTTAAAAG
2025253 TTAAAAATAT
1 TTAAAAATAT
2025263 CAAACTTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (19 bp):
TTAAAAATATATTTAAAAG
Found at i:2028170 original size:31 final size:31
Alignment explanation
Indices: 2028135--2028195 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
2028125 CATTACTGTA
*
2028135 ACTTAACTAAAAAAGTTCAAATAGTTCAATG
1 ACTTAAATAAAAAAGTTCAAATAGTTCAATG
* ** *
2028166 ACTTAAATGAAAACTTTCATATAGTTCAAT
1 ACTTAAATAAAAAAGTTCAAATAGTTCAAT
2028196 TATTATTTTG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.46, C:0.13, G:0.08, T:0.33
Consensus pattern (31 bp):
ACTTAAATAAAAAAGTTCAAATAGTTCAATG
Found at i:2028991 original size:27 final size:28
Alignment explanation
Indices: 2028953--2029024 Score: 112
Period size: 27 Copynumber: 2.6 Consensus size: 28
2028943 TCAAGCATAG
2028953 TTTAGATTTTATTATAAGCTTACA-TTT
1 TTTAGATTTTATTATAAGCTTACATTTT
*
2028980 TTTAGATTTTATTAAAAGCTTACATTTT
1 TTTAGATTTTATTATAAGCTTACATTTT
*
2029008 TTTCGATTTTA-TATAAG
1 TTTAGATTTTATTATAAG
2029025 AAGATAAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
27 28 0.68
28 13 0.32
ACGTcount: A:0.31, C:0.07, G:0.08, T:0.54
Consensus pattern (28 bp):
TTTAGATTTTATTATAAGCTTACATTTT
Found at i:2034894 original size:5 final size:6
Alignment explanation
Indices: 2034877--2034903 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
2034867 GTTAACATAC
2034877 ATAAAA ATAAAA ATAAAA ATAAAA ATA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATA
2034904 TTAATATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
ATAAAA
Found at i:2040477 original size:35 final size:35
Alignment explanation
Indices: 2040431--2040500 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
2040421 ATAAAATAAG
2040431 TTAGTACATGATAAAATTACACTTTTTGTCATTCA
1 TTAGTACATGATAAAATTACACTTTTTGTCATTCA
2040466 TTAGTACATGATAAAATTACACTTTTTGTCATTCA
1 TTAGTACATGATAAAATTACACTTTTTGTCATTCA
2040501 ATAATTTATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.43
Consensus pattern (35 bp):
TTAGTACATGATAAAATTACACTTTTTGTCATTCA
Found at i:2044375 original size:32 final size:32
Alignment explanation
Indices: 2044326--2044392 Score: 75
Period size: 32 Copynumber: 2.1 Consensus size: 32
2044316 AACTTTTATG
*
2044326 AAATATTTTCAGAAAATTTA-TCAAACAACCAA
1 AAATATTTTCAGAAAATTCATTCAAA-AACCAA
* *
2044358 AAATATTTTACA-TAAATTCATTCAAATACCAA
1 AAATATTTT-CAGAAAATTCATTCAAAAACCAA
2044390 AAA
1 AAA
2044393 ATTATTAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
32 23 0.77
33 7 0.23
ACGTcount: A:0.54, C:0.15, G:0.01, T:0.30
Consensus pattern (32 bp):
AAATATTTTCAGAAAATTCATTCAAAAACCAA
Found at i:2047431 original size:60 final size:60
Alignment explanation
Indices: 2047355--2047493 Score: 151
Period size: 60 Copynumber: 2.3 Consensus size: 60
2047345 TTTTTTCTTT
* * * * *
2047355 ATCCAATTATGAAAGTTACT-AAATGGTTACTTAATTA-CTAGTATATTTCTTTTTTTG-CC
1 ATCCAAATATGAAAGTTACTAAAATGGTCACTCAACTATC-AGTAAATTTC-TTTTTTGACC
* *
2047414 ATTCAAATATGAGAAGTTA-TAAAATGGTCACTCAACTATCAGTAAATTTCTTTTTTGATC
1 ATCCAAATATGA-AAGTTACTAAAATGGTCACTCAACTATCAGTAAATTTCTTTTTTGACC
2047474 ATCCAAATATGAAAAGTTAC
1 ATCCAAATATG-AAAGTTAC
2047494 AACATAGCTA
Statistics
Matches: 66, Mismatches: 8, Indels: 10
0.79 0.10 0.12
Matches are distributed among these distances:
59 18 0.27
60 46 0.70
61 2 0.03
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.40
Consensus pattern (60 bp):
ATCCAAATATGAAAGTTACTAAAATGGTCACTCAACTATCAGTAAATTTCTTTTTTGACC
Found at i:2048405 original size:14 final size:13
Alignment explanation
Indices: 2048388--2048421 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
2048378 TTTTTTCATC
2048388 TTAATTATTATTTT
1 TTAATTATT-TTTT
2048402 TTAATTATTTTTT
1 TTAATTATTTTTT
*
2048415 TCAATTA
1 TTAATTA
2048422 ATAGATTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (13 bp):
TTAATTATTTTTT
Found at i:2059731 original size:18 final size:18
Alignment explanation
Indices: 2059708--2059743 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
2059698 AGAAGAAATG
2059708 TAGTTCTATACGGATTCT
1 TAGTTCTATACGGATTCT
2059726 TAGTTCTATACGGATTCT
1 TAGTTCTATACGGATTCT
2059744 ACTTGTGCGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.44
Consensus pattern (18 bp):
TAGTTCTATACGGATTCT
Found at i:2061202 original size:20 final size:20
Alignment explanation
Indices: 2061165--2061225 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 20
2061155 GATATTAATT
* *
2061165 AATTATTATTATT-CTATTA
1 AATTATAATTATTATTATTA
2061184 AATTATAATT-TATATTATTA
1 AATTATAATTAT-TATTATTA
*
2061204 AATTATTATTATTATTATTA
1 AATTATAATTATTATTATTA
2061224 AA
1 AA
2061226 AATAAATTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
18 1 0.03
19 10 0.28
20 24 0.67
21 1 0.03
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.56
Consensus pattern (20 bp):
AATTATAATTATTATTATTA
Found at i:2061519 original size:13 final size:14
Alignment explanation
Indices: 2061501--2061547 Score: 62
Period size: 13 Copynumber: 3.5 Consensus size: 14
2061491 TTATAAAGGT
2061501 AATAAAATAAAAG-
1 AATAAAATAAAAGA
* *
2061514 AATAAAAGAAATGA
1 AATAAAATAAAAGA
2061528 AATAAAAT-AAAGA
1 AATAAAATAAAAGA
2061541 AATAAAA
1 AATAAAA
2061548 CAAAGTAAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
13 22 0.76
14 7 0.24
ACGTcount: A:0.77, C:0.00, G:0.09, T:0.15
Consensus pattern (14 bp):
AATAAAATAAAAGA
Found at i:2061541 original size:18 final size:18
Alignment explanation
Indices: 2061505--2061559 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
2061495 AAAGGTAATA
* *
2061505 AAATAAAAGAATA-AAAG
1 AAATAAAACAAAATAAAG
* *
2061522 AAATGAAATAAAATAAAG
1 AAATAAAACAAAATAAAG
*
2061540 AAATAAAACAAAGTAAAG
1 AAATAAAACAAAATAAAG
2061558 AA
1 AA
2061560 GAAACATAAG
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
17 10 0.32
18 21 0.68
ACGTcount: A:0.75, C:0.02, G:0.11, T:0.13
Consensus pattern (18 bp):
AAATAAAACAAAATAAAG
Found at i:2062277 original size:45 final size:45
Alignment explanation
Indices: 2062171--2062277 Score: 153
Period size: 45 Copynumber: 2.4 Consensus size: 45
2062161 CGATTACTGT
* *
2062171 TACTGTTACCGTTACTATTACCGATTTGACACTTTGTGTGTCGAA
1 TACTGTTACCGTTACTGTTACCGATTAGACACTTTGTGTGTCGAA
* *
2062216 TACTGTTACCGTTACTGTTACTGATTCAG-CACTTTGTGTGTTGAA
1 TACTGTTACCGTTACTGTTACCGATT-AGACACTTTGTGTGTCGAA
*
2062261 TACTGTTACTGTTACTG
1 TACTGTTACCGTTACTG
2062278 CTATTGCTAC
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
45 55 0.98
46 1 0.02
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.42
Consensus pattern (45 bp):
TACTGTTACCGTTACTGTTACCGATTAGACACTTTGTGTGTCGAA
Found at i:2062288 original size:12 final size:12
Alignment explanation
Indices: 2062273--2062299 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
2062263 CTGTTACTGT
2062273 TACTGCTATTGC
1 TACTGCTATTGC
2062285 TACTGCTATTGC
1 TACTGCTATTGC
2062297 TAC
1 TAC
2062300 CGTTACTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.19, C:0.26, G:0.15, T:0.41
Consensus pattern (12 bp):
TACTGCTATTGC
Found at i:2064848 original size:25 final size:25
Alignment explanation
Indices: 2064814--2064864 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
2064804 ACATCATAGT
2064814 TAAGGTTTTTAGACAATCTTTACTC
1 TAAGGTTTTTAGACAATCTTTACTC
2064839 TAAGGTTTTTAGACAATCTTTACTC
1 TAAGGTTTTTAGACAATCTTTACTC
2064864 T
1 T
2064865 TACTCTTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.16, G:0.12, T:0.45
Consensus pattern (25 bp):
TAAGGTTTTTAGACAATCTTTACTC
Found at i:2064931 original size:31 final size:32
Alignment explanation
Indices: 2064896--2064963 Score: 84
Period size: 32 Copynumber: 2.2 Consensus size: 32
2064886 ATAAAGTAAC
* * *
2064896 ATTTAGTCCCTAAAC-TTGATACTTTTTTTAA
1 ATTTAGTCCCAAAACTTTGATAATTTTTCTAA
* *
2064927 ATTTAGTCTCAAAACTTTGATAATTTTTCTCA
1 ATTTAGTCCCAAAACTTTGATAATTTTTCTAA
2064959 ATTTA
1 ATTTA
2064964 ATTTTCGAAC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
31 13 0.42
32 18 0.58
ACGTcount: A:0.31, C:0.15, G:0.06, T:0.49
Consensus pattern (32 bp):
ATTTAGTCCCAAAACTTTGATAATTTTTCTAA
Found at i:2080110 original size:58 final size:60
Alignment explanation
Indices: 2080002--2080123 Score: 158
Period size: 58 Copynumber: 2.0 Consensus size: 60
2079992 TACAAAACCA
*
2080002 ATTCAATCAATAAATTCCGAAAAAAAAAACATAATCAAACAAGAACACTTATGTTACTC-G
1 ATTCAATCAATAAATTCCG-AAAAAAAAACATAATCAAACAAGAACACTTATATTACTCTG
* * * * * *
2080062 ATTCAATTAATAAATTTCG-AAGAAAAACATGATCGAACAAGAATACTTATATTACTCTG
1 ATTCAATCAATAAATTCCGAAAAAAAAACATAATCAAACAAGAACACTTATATTACTCTG
2080121 ATT
1 ATT
2080124 TGGGTGTGAA
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
58 33 0.61
59 4 0.07
60 17 0.31
ACGTcount: A:0.48, C:0.16, G:0.08, T:0.28
Consensus pattern (60 bp):
ATTCAATCAATAAATTCCGAAAAAAAAACATAATCAAACAAGAACACTTATATTACTCTG
Found at i:2085678 original size:14 final size:13
Alignment explanation
Indices: 2085656--2085692 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
2085646 ACTCACTTAT
*
2085656 TTAAAATATATTA
1 TTAAAATATATAA
2085669 -TAAAATATATAA
1 TTAAAATATATAA
2085681 TTAAAATA-ATAA
1 TTAAAATATATAA
2085693 AAATAATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 15 0.68
13 7 0.32
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
TTAAAATATATAA
Found at i:2086122 original size:25 final size:26
Alignment explanation
Indices: 2086089--2086140 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2086079 TACAATGTTA
*
2086089 AAATTAAATAA-TATTTAAAAAAATT
1 AAATAAAATAATTATTTAAAAAAATT
**
2086114 AAATAAAATAATTATTTTTAAAAATT
1 AAATAAAATAATTATTTAAAAAAATT
2086140 A
1 A
2086141 GAAATAGTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (26 bp):
AAATAAAATAATTATTTAAAAAAATT
Found at i:2086689 original size:30 final size:31
Alignment explanation
Indices: 2086633--2086691 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
2086623 TATATCAAAT
2086633 CAAAATTCATGTATTAAATTACACATTTAAC
1 CAAAATTCATGTATTAAATTACACATTTAAC
* **
2086664 CAAAGTTCATGTA-TAAATTTGACATTTA
1 CAAAATTCATGTATTAAATTACACATTTA
2086692 TCTTTTACCA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 13 0.52
31 12 0.48
ACGTcount: A:0.42, C:0.14, G:0.07, T:0.37
Consensus pattern (31 bp):
CAAAATTCATGTATTAAATTACACATTTAAC
Found at i:2087052 original size:32 final size:33
Alignment explanation
Indices: 2086999--2087069 Score: 99
Period size: 32 Copynumber: 2.2 Consensus size: 33
2086989 AAACTTATCC
* * *
2086999 AAAAGTACCTAGTTGGTACCTGAA-TTGTCTAA
1 AAAAATACGTAGTTGGCACCTGAACTTGTCTAA
*
2087031 ACAAATACGTAGTTGGCACCTGAACTTGTCTAA
1 AAAAATACGTAGTTGGCACCTGAACTTGTCTAA
2087064 AAAAAT
1 AAAAAT
2087070 TGTACTCTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
32 20 0.61
33 13 0.39
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (33 bp):
AAAAATACGTAGTTGGCACCTGAACTTGTCTAA
Found at i:2088338 original size:259 final size:260
Alignment explanation
Indices: 2087878--2088363 Score: 965
Period size: 259 Copynumber: 1.9 Consensus size: 260
2087868 CTCGTGGATA
2087878 GAGAATATAATATTGAAATTTTTTTACTCTTGCTCAAGAGTTCAGTCCAACTCGAATTTTAATTT
1 GAGAATATAATATTGAAATTTTTTTACTCTTGCTCAAGAGTTCAGTCCAACTCGAATTTTAATTT
2087943 ATCCGGAATTCAATGTAGCTAGAATTTTAGACAAAAAAAATAAAAACTTTTAATAATATTAAAAA
66 ATCCGGAATTCAATGTAGCTAGAATTTTAGACAAAAAAAATAAAAACTTTTAATAATATTAAAAA
2088008 ATAGTGAGATGAACGTACGCACGCGAGGCCAAAGCGCGTGAAACAGTCTTTCCCCCAGGCTCCAA
131 ATAGTGAGATGAACGTACGCACGCGAGGCCAAAGCGCGTGAAACAGTCTTTCCCCCAGGCTCCAA
2088073 CATGTTTGTTGCTCTTAGAATCGAAGTATGTAAATGTTAATTTATCTAATGTTTTAAATTTGAGT
196 CATGTTTGTTGCTCTTAGAATCGAAGTATGTAAATGTTAATTTATCTAATGTTTTAAATTTGAGT
2088138 GAGAATATAATATTGAAATTTTTTTACTCTTGCTCAAGAGTTCAGTCCAACTCGAATTTTAATTT
1 GAGAATATAATATTGAAATTTTTTTACTCTTGCTCAAGAGTTCAGTCCAACTCGAATTTTAATTT
2088203 ATCCGGAATTCAATGTAGCTAGAATTTTAGAC-AAAAAAATAAAAACTTTTAATAATATTAAAAA
66 ATCCGGAATTCAATGTAGCTAGAATTTTAGACAAAAAAAATAAAAACTTTTAATAATATTAAAAA
2088267 ATAGTGAGATGAACGTACGCACGCGAGGCCAAAGCGCGTGAAACAGTCTTTCCCCCAGGCTCCAA
131 ATAGTGAGATGAACGTACGCACGCGAGGCCAAAGCGCGTGAAACAGTCTTTCCCCCAGGCTCCAA
2088332 CATGTTTGTTGCTCTTAGAATCGAAGTATGTA
196 CATGTTTGTTGCTCTTAGAATCGAAGTATGTA
2088364 CGACAATTAC
Statistics
Matches: 226, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
259 129 0.57
260 97 0.43
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (260 bp):
GAGAATATAATATTGAAATTTTTTTACTCTTGCTCAAGAGTTCAGTCCAACTCGAATTTTAATTT
ATCCGGAATTCAATGTAGCTAGAATTTTAGACAAAAAAAATAAAAACTTTTAATAATATTAAAAA
ATAGTGAGATGAACGTACGCACGCGAGGCCAAAGCGCGTGAAACAGTCTTTCCCCCAGGCTCCAA
CATGTTTGTTGCTCTTAGAATCGAAGTATGTAAATGTTAATTTATCTAATGTTTTAAATTTGAGT
Found at i:2090496 original size:38 final size:38
Alignment explanation
Indices: 2090407--2090495 Score: 106
Period size: 38 Copynumber: 2.3 Consensus size: 38
2090397 AACAATAATA
* * **
2090407 TTTAATACAATGAAATATTTATTATATTTATTTGTATT
1 TTTAATATAATAAAATATTTATTATATTTATAAGTATT
*
2090445 TTTAATATAATAAAATATTTATTATATTTATGGAAGTGTTT
1 TTTAATATAATAAAATATTTATTATATTTAT--AAGT-ATT
2090486 TTTAATATAA
1 TTTAATATAA
2090496 ATACTTTTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
38 29 0.67
40 2 0.05
41 12 0.28
ACGTcount: A:0.39, C:0.01, G:0.07, T:0.53
Consensus pattern (38 bp):
TTTAATATAATAAAATATTTATTATATTTATAAGTATT
Found at i:2091167 original size:17 final size:19
Alignment explanation
Indices: 2091132--2091167 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
2091122 TAATGACAAT
2091132 AAAATAATTTAATAACATA
1 AAAATAATTTAATAACATA
2091151 AAAAT-ATTTAA-AACATA
1 AAAATAATTTAATAACATA
2091168 TATTAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 6 0.35
19 5 0.29
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.31
Consensus pattern (19 bp):
AAAATAATTTAATAACATA
Found at i:2091705 original size:3 final size:3
Alignment explanation
Indices: 2091697--2091741 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
2091687 TTAGACTTCT
*
2091697 ATA ATA ATA ATA ATA ACA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
2091742 TGAACTTTCG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:2091767 original size:3 final size:3
Alignment explanation
Indices: 2091759--2091791 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
2091749 TCGAGATTCA
2091759 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
2091792 TACCTTTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:2099857 original size:71 final size:71
Alignment explanation
Indices: 2099771--2099911 Score: 255
Period size: 71 Copynumber: 2.0 Consensus size: 71
2099761 GAAAATAACT
* *
2099771 CTTAAATTTTATCAAACTGTCCATGCCGTAAGTACACAAGTACTTCAGACTTCAGAGTTTGATTC
1 CTTAAATTTTATCAAACTGTCCATGCCATAAGTACACAAGTACTTAAGACTTCAGAGTTTGATTC
2099836 ACGTGA
66 ACGTGA
*
2099842 CTTAAATTTTATCAAACTGTCCATGCCATAAGTACACAAGTACTTAAGACTTTAGAGTTTGATTC
1 CTTAAATTTTATCAAACTGTCCATGCCATAAGTACACAAGTACTTAAGACTTCAGAGTTTGATTC
2099907 ACGTG
66 ACGTG
2099912 CTTCAAGTTC
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
71 67 1.00
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Consensus pattern (71 bp):
CTTAAATTTTATCAAACTGTCCATGCCATAAGTACACAAGTACTTAAGACTTCAGAGTTTGATTC
ACGTGA
Found at i:2100290 original size:52 final size:53
Alignment explanation
Indices: 2100230--2100334 Score: 194
Period size: 53 Copynumber: 2.0 Consensus size: 53
2100220 AAGAAAAGTG
*
2100230 TAATGCCATCCAAATTGTCA-TCGAATCAAGAAACTCAAAAGGGAGGGGTTAA
1 TAATGCCATCCAAATTATCATTCGAATCAAGAAACTCAAAAGGGAGGGGTTAA
2100282 TAATGCCATCCAAATTATCATTCGAATCAAGAAACTCAAAAGGGAGGGGTTAA
1 TAATGCCATCCAAATTATCATTCGAATCAAGAAACTCAAAAGGGAGGGGTTAA
2100335 CCTTACTTTT
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
52 19 0.37
53 32 0.63
ACGTcount: A:0.41, C:0.17, G:0.20, T:0.22
Consensus pattern (53 bp):
TAATGCCATCCAAATTATCATTCGAATCAAGAAACTCAAAAGGGAGGGGTTAA
Found at i:2107596 original size:20 final size:20
Alignment explanation
Indices: 2107571--2107610 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
2107561 AATTTAATCC
*
2107571 AAAAAAATTACAA-GAAATGA
1 AAAAAAAAT-CAATGAAATGA
2107591 AAAAAAAATCAATGAAATGA
1 AAAAAAAATCAATGAAATGA
2107611 GAGAATTAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 3 0.17
20 15 0.83
ACGTcount: A:0.70, C:0.05, G:0.10, T:0.15
Consensus pattern (20 bp):
AAAAAAAATCAATGAAATGA
Found at i:2108970 original size:5 final size:5
Alignment explanation
Indices: 2108960--2109001 Score: 63
Period size: 5 Copynumber: 9.0 Consensus size: 5
2108950 ACATGTAATA
2108960 ATATT ATATT ATATT ATATT ATATT ATA-T ATATT -T-TT ATATT
1 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
2109002 TTTTAGTGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
3 2 0.06
4 6 0.18
5 26 0.76
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
ATATT
Found at i:2111127 original size:17 final size:17
Alignment explanation
Indices: 2111105--2111139 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
2111095 TCCATTGCCT
2111105 CTGAATAAACGAGACTG
1 CTGAATAAACGAGACTG
2111122 CTGAATAAACGAGACTG
1 CTGAATAAACGAGACTG
2111139 C
1 C
2111140 AAATCTTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.20, G:0.23, T:0.17
Consensus pattern (17 bp):
CTGAATAAACGAGACTG
Found at i:2118649 original size:28 final size:28
Alignment explanation
Indices: 2118618--2118688 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
2118608 ATATTGATTT
* * * *
2118618 TTAAATCTATTAAGTCAAATTAGTTCAA
1 TTAAATCTATTAAATCAAAATAATTAAA
2118646 TTAAATCTATTAAATCAAAATAATTAAA
1 TTAAATCTATTAAATCAAAATAATTAAA
*
2118674 TTAAATCTATAAAAT
1 TTAAATCTATTAAAT
2118689 AGGTTTAAGT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.51, C:0.08, G:0.03, T:0.38
Consensus pattern (28 bp):
TTAAATCTATTAAATCAAAATAATTAAA
Found at i:2118688 original size:14 final size:14
Alignment explanation
Indices: 2118618--2118688 Score: 56
Period size: 14 Copynumber: 5.1 Consensus size: 14
2118608 ATATTGATTT
*
2118618 TTAAATCTATTAAG
1 TTAAATCTATTAAA
* *
2118632 TCAAAT-TAGTTCAA
1 TTAAATCTA-TTAAA
2118646 TTAAATCTATTAAA
1 TTAAATCTATTAAA
* *
2118660 TCAAAAT-AATTAAA
1 T-TAAATCTATTAAA
*
2118674 TTAAATCTATAAAA
1 TTAAATCTATTAAA
2118688 T
1 T
2118689 AGGTTTAAGT
Statistics
Matches: 43, Mismatches: 10, Indels: 8
0.70 0.16 0.13
Matches are distributed among these distances:
13 6 0.14
14 31 0.72
15 6 0.14
ACGTcount: A:0.51, C:0.08, G:0.03, T:0.38
Consensus pattern (14 bp):
TTAAATCTATTAAA
Found at i:2122257 original size:25 final size:25
Alignment explanation
Indices: 2122206--2122262 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
2122196 TTTGTAACTA
* * *
2122206 TATTGTGCATATATTTTATATATAT
1 TATTATGCATATATTTTACATACAT
2122231 TATTATGCATATATTTTAGCAT-CAT
1 TATTATGCATATATTTTA-CATACAT
2122256 TAGTTAT
1 TA-TTAT
2122263 ACATTTTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 21 0.78
26 6 0.22
ACGTcount: A:0.32, C:0.07, G:0.09, T:0.53
Consensus pattern (25 bp):
TATTATGCATATATTTTACATACAT
Found at i:2122752 original size:16 final size:16
Alignment explanation
Indices: 2122709--2122758 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
2122699 CCGTTAGCCC
2122709 AACTAACCTAAACCCA
1 AACTAACCTAAACCCA
* **
2122725 TTAC-AAATTAAACCCA
1 -AACTAACCTAAACCCA
2122741 AACTAACCTAAACCCA
1 AACTAACCTAAACCCA
2122757 AA
1 AA
2122759 ACCCTGTAAG
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
15 2 0.08
16 22 0.85
17 2 0.08
ACGTcount: A:0.52, C:0.32, G:0.00, T:0.16
Consensus pattern (16 bp):
AACTAACCTAAACCCA
Found at i:2123797 original size:3 final size:3
Alignment explanation
Indices: 2123774--2123821 Score: 60
Period size: 3 Copynumber: 15.7 Consensus size: 3
2123764 ATTTTTATAA
* * *
2123774 TAT TAG TAT TTT TAC TAT TAT TAT TAT TAT TAT TAT TAT TAT GTAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
2123820 TA
1 TA
2123822 GCTTATGTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:2125318 original size:19 final size:20
Alignment explanation
Indices: 2125275--2125320 Score: 64
Period size: 17 Copynumber: 2.5 Consensus size: 20
2125265 CAACAATAAT
2125275 ATAAAATA-ATGATATGTAC
1 ATAAAATATATGATATGTAC
2125294 --AAAATATAT-ATATGTAC
1 ATAAAATATATGATATGTAC
2125311 ATAAAATATA
1 ATAAAATATA
2125321 CACTAATGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
17 14 0.58
18 2 0.08
19 8 0.33
ACGTcount: A:0.57, C:0.04, G:0.07, T:0.33
Consensus pattern (20 bp):
ATAAAATATATGATATGTAC
Found at i:2125528 original size:15 final size:16
Alignment explanation
Indices: 2125508--2125546 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
2125498 TTGCATTAAA
*
2125508 ATATATATACATA-AT
1 ATATATATAAATACAT
2125523 ATATATA-AAATACAT
1 ATATATATAAATACAT
2125538 ATATATATA
1 ATATATATA
2125547 TACGTATTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 4 0.19
15 16 0.76
16 1 0.05
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATATATAAATACAT
Found at i:2125616 original size:29 final size:30
Alignment explanation
Indices: 2125584--2125643 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 30
2125574 AACACACTAC
2125584 ATAAGTAAATAAAATA-TAATAAT-ACTAAA
1 ATAAGTAAATAAAATAGTAA-AATAACTAAA
* * *
2125613 ATAATTAATTTAAATAGTAAAATAACTAAA
1 ATAAGTAAATAAAATAGTAAAATAACTAAA
2125643 A
1 A
2125644 AAGGATTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.30
Consensus pattern (30 bp):
ATAAGTAAATAAAATAGTAAAATAACTAAA
Found at i:2127340 original size:154 final size:148
Alignment explanation
Indices: 2127177--2128357 Score: 1017
Period size: 154 Copynumber: 7.7 Consensus size: 148
2127167 TCAACGCACC
*
2127177 TCTCGCAATATGAGTTGATTTTTTTTTTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACC
1 TCTCGCAATATGAGTTGA---TTTTTTTGAAA-ACAGAAATTGAAAATACCTCAGC--GTG-TCC
* * *
2127242 GAGGCTCAACTCACATCTCGCAATATAAGTTGA-TTTTTTGAAAAAAAAAAATTGAAAATACCTC
59 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTGAAAATACCTC
2127306 AACGTGTCTTGAGGCTCAACTCATT
124 AACGTGTCTTGAGGCTCAACTCATT
* * * *
2127331 TCTCGCAATATGTGTTGA--ATTTTGAAAACAGAAATTGAAATTACCTCAGTGTGTCCCGAGGCT
1 TCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGT-CCGAGGCT
* * *
2127394 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATG
65 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTGAAAATACCTCAACGTG
2127459 TCTTGAGGCTCAACTCATT
130 TCTTGAGGCTCAACTCATT
* *
2127478 TCTCGCAATATGAGTTGATTTTTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTG
1 TCTCGCAATATGAGTTGA-----TTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCC-G
* * *
2127543 AGGCTCAACTCACCTCTCGTAATATAAGTTGATTTTTTTTG-AAAACAGAAATTGAAAATACCTC
60 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAAACAAAAATTGAAAATACCTC
*
2127607 AACGTGTCTTGAGGCTCAACTTATT
124 AACGTGTCTTGAGGCTCAACTCATT
* * * *
2127632 TCTCGCAATATGAGTTGA--ATTTTGAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCT
1 TCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTC-CGAGGCT
** * * * * *
2127695 CAACTCATTTCTCACAATATGAGTTGA--ATTTTG-AAAACATAAATTGAAATTACCTCAGCGTG
65 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTGAAAATACCTCAACGTG
** *
2127757 TCCCGAGGCTCAACTCACCTC
130 TCTTGAGGCTCAACTCA--TT
* * ** * ** ** * * * * * *
2127778 TCACAGAAATTAAAAAACTCAACTCACCTTTCG-CAATATAAATTGAAAAAAATACCACAATGTG
1 TCTC-GCAA-T--ATGAGTTGA-T--TTTTTTGAAAACAGAAATTG---AAAATACCTC-A-GCG
* * * *
2127842 TGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGACAGAAATTGA
54 TG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGAAAAACAAAAATTGA
* * * * **
2127907 AAATACCTCAGCATGTGAAC-CGAGGCTCAATTCACC
115 AAATACCTCA--ACGTG-TCTTGAGGCTCAACTCATT
* * *
2127943 TCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCT
1 TCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTC-CGAGGCT
** * * *
2128008 CAACTCATTTCTCGCAATATGAGTTGA--ATTTTG-AAAACAGAAATTGAAATTACCTC-A-GTG
65 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTGAAAATACCTCAACGTG
2128068 TCTTGAGGCTCAACTCATT
130 TCTTGAGGCTCAACTCATT
* * *
2128087 TCTCACAATATGAGTTGATTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGC
1 TCTCGCAATATGAGTTGA-TTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCC-GAGGC
* * *
2128152 TCTACTCACCTTTCGCAATATGAGTTGATTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGA
64 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTT--------GAAA---AACAA---AAATTGA
** * ***
2128217 AAATACCTCGGCGTGTGACTTAAGGCTCAACTCGCC
115 AAATACCTCAACGTGT--CTTGAGGCTCAACTCATT
* * *
2128253 TCTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCT
1 TCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCC-GAGGCT
*
2128318 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAAA
65 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAA
2128358 TACCTCAGCG
Statistics
Matches: 844, Mismatches: 119, Indels: 128
0.77 0.11 0.12
Matches are distributed among these distances:
143 1 0.00
144 76 0.09
145 66 0.08
146 40 0.05
147 136 0.16
148 43 0.05
149 13 0.02
150 4 0.00
153 4 0.00
154 187 0.22
155 14 0.02
156 11 0.01
157 12 0.01
158 5 0.01
159 45 0.05
160 3 0.00
161 5 0.01
162 15 0.02
163 1 0.00
164 12 0.01
165 104 0.12
166 30 0.04
167 16 0.02
168 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.31
Consensus pattern (148 bp):
TCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCGAGGCTC
AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTGAAAATACCTCAACGTGT
CTTGAGGCTCAACTCATT
Found at i:2127395 original size:72 final size:73
Alignment explanation
Indices: 2127166--2128205 Score: 923
Period size: 72 Copynumber: 13.7 Consensus size: 73
2127156 TGATCTGAAA
* *
2127166 CTCAACGCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGACAGAAATTGAAAATACCTCA
1 CTCAACTCACTTCTCGCAATATGAGTTGA----TTTTTTGAAA-ACAGAAATTGAAAATACCTCA
*
2127231 GCATGTGAACC-GAGG
61 GC--GTG-TCCTGAGG
* * * * *
2127246 CTCAACTCACATCTCGCAATATAAGTTGATTTTTTGAAAAAAAAAAATTGAAAATACCTCAACGT
1 CTCAACTCACTTCTCGCAATATGAGTTGATTTTTTG-AAAACAGAAATTGAAAATACCTCAGCGT
*
2127311 GTCTTGAGG
65 GTCCTGAGG
* * * * *
2127320 CTCAACTCATTTCTCGCAATATGTGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGTGTG
1 CTCAACTCACTTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTG
*
2127384 TCCCGAGG
66 TCCTGAGG
* * *
2127392 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCA
1 CTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAATACCTCAGCG
*
2127457 TGTCTTGAGG
64 TGTCCTGAGG
* * *
2127467 CTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTTTGACAACAGAAATTGAAATTACCTC
1 CTCAACTCACTTCTCGCAATATGAGTTGA------TTTTTTGAAAACAGAAATTGAAAATACCTC
2127532 AGCGTGTCCTGAGG
60 AGCGTGTCCTGAGG
* * * *
2127546 CTCAACTCACCTCTCGTAATATAAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACCTCAACG
1 CTCAACTCACTTCTCGCAATATGAGTTGA--TTTTTTGAAAACAGAAATTGAAAATACCTCAGCG
*
2127611 TGTCTTGAGG
64 TGTCCTGAGG
* * * * *
2127621 CTCAACTTATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAAAAATTGAAAATACCTCAACGTG
1 CTCAACTCACTTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTG
*
2127685 TCTTGAGG
66 TCCTGAGG
* * * * *
2127693 CTCAACTCATTTCTCACAATATGAGTTGA-ATTTTGAAAACATAAATTGAAATTACCTCAGCGTG
1 CTCAACTCACTTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTG
*
2127757 TCCCGAGG
66 TCCTGAGG
* * * ** * ** * * * *
2127765 CTCAACTCACCTCTCACAGAAATTAAAAAACTCAACTCACCTTTCG-CAATATAAATTGAAAAAA
1 CTCAACTCA-CT-TCTC-GCAA-T-----A-TGAGTTGATTTTTTGAAAACAGAAATTG---AAA
* * *
2127829 ATACCACAATGTGTGAT-CTGAAG
53 ATACCTC-A-GCGTG-TCCTGAGG
*
2127852 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGACAGAAATTGAAAATACCTCA
1 CTCAACTCACTTCTCGCAATATGAGTTGA----TTTTTTGAAA-ACAGAAATTGAAAATACCTCA
*
2127917 GCATGTGAACC-GAGG
61 GC--GTG-TCCTGAGG
* * * *
2127932 CTCAATTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAACGT
1 CTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCTCAGCGT
*
2127997 GTCTTGAGG
65 GTCCTGAGG
* * *
2128006 CTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCA--GTG
1 CTCAACTCACTTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTG
*
2128068 TCTTGAGG
66 TCCTGAGG
* * * *
2128076 CTCAACTCATTTCTCACAATATGAGTTGATTTTTTTTGACAACAGAAATTGAAATTACCTCAGCG
1 CTCAACTCACTTCTCGCAATATGAGTTGA--TTTTTTGAAAACAGAAATTGAAAATACCTCAGCG
2128141 TGTCCTGAGG
64 TGTCCTGAGG
* *
2128151 CTCTACTCACCTT-TCGCAATATGAGTTGATTTTTTTGAAAGGCAGAAATTGAAAA
1 CTCAACTCA-CTTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAA
2128206 ACGGAAATTG
Statistics
Matches: 802, Mismatches: 114, Indels: 93
0.79 0.11 0.09
Matches are distributed among these distances:
70 39 0.05
72 199 0.25
73 36 0.04
74 85 0.11
75 168 0.21
76 52 0.06
77 18 0.02
78 2 0.00
79 56 0.07
80 79 0.10
81 6 0.01
82 15 0.02
83 13 0.02
84 3 0.00
85 11 0.01
86 2 0.00
87 17 0.02
88 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.32
Consensus pattern (73 bp):
CTCAACTCACTTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTG
TCCTGAGG
Found at i:2128273 original size:91 final size:88
Alignment explanation
Indices: 2128120--2128294 Score: 235
Period size: 91 Copynumber: 2.0 Consensus size: 88
2128110 TTTGACAACA
* * * * *
2128120 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCTACTCACCTTTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
2128185 TTGA-AAGGCAGAAATTGAAAAACG
66 TTGACAA--CAGAAATTGAAAAACG
* * *
2128209 GAAATTGAAAATACCTCGGCGTGTGACTTAAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT--CCTAAGGCTCAACTCACCTCTCGCAATACGAGTTGATTT
2128274 TTTTGACAACAGAAATTGAAA
64 TTTTGACAACAGAAATTGAAA
2128295 TTACCTCAGC
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
89 22 0.29
90 12 0.16
91 39 0.52
92 2 0.03
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (88 bp):
GAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
TTGACAACAGAAATTGAAAAACG
Found at i:2128335 original size:74 final size:72
Alignment explanation
Indices: 2128209--2128479 Score: 270
Period size: 62 Copynumber: 3.9 Consensus size: 72
2128199 TTGAAAAACG
* * * * *
2128209 GAAATTGAAAATACCTCGGCGTGTGACTTAAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTT
1 GAAATTG-AAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
2128274 TTTTGACAACA
63 TTTT-ACAACA
2128285 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
2128350 TT------
65 TTACAACA
*
2128352 -AAA---AAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA------
1 GAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
2128407 -ACATACA
66 TACA-ACA
* * *
2128414 GAAAATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGAATTT
1 G-AAATTGA-AATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
2128479 T
64 T
2128480 GAAATAAAAC
Statistics
Matches: 167, Mismatches: 9, Indels: 41
0.77 0.04 0.19
Matches are distributed among these distances:
62 48 0.29
63 3 0.02
64 3 0.02
66 3 0.02
67 1 0.01
68 48 0.29
74 39 0.23
75 3 0.02
76 19 0.11
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.28
Consensus pattern (72 bp):
GAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
TACAACA
Found at i:2128346 original size:165 final size:162
Alignment explanation
Indices: 2128041--2128351 Score: 480
Period size: 165 Copynumber: 1.9 Consensus size: 162
2128031 TTGAATTTTG
* * ** *
2128041 AAAACAGAAATTGAAATTACCTCAGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAT
1 AAAACAGAAATTGAAAATACCTCAGTGTCTTAAGGCTCAACTCACCTCTCACAATACGAGTTGAT
* *
2128106 TTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCTACTCACCTTTCGCAAT
66 TTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
2128171 ATGAGTTGATTTTTTTGAAAGGCAGAAATTGA
131 ATGAGTTGATTTTTTTGAAAGGCAGAAATTGA
* * * *
2128203 AAAACGGAAATTGAAAATACCTCGGCGTGTGACTTAAGGCTCAACTCGCCTCTCGCAATACGAGT
1 AAAACAGAAATTGAAAATACCTC--AGTGT--CTTAAGGCTCAACTCACCTCTCACAATACGAGT
2128268 TGA-TTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
62 TGATTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
2128332 CAATATGAGTTGATTTTTTT
127 CAATATGAGTTGATTTTTTT
2128352 AAAAAATACC
Statistics
Matches: 134, Mismatches: 11, Indels: 5
0.89 0.07 0.03
Matches are distributed among these distances:
162 21 0.16
164 4 0.03
165 79 0.59
166 30 0.22
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (162 bp):
AAAACAGAAATTGAAAATACCTCAGTGTCTTAAGGCTCAACTCACCTCTCACAATACGAGTTGAT
TTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTGATTTTTTTGAAAGGCAGAAATTGA
Found at i:2128351 original size:76 final size:75
Alignment explanation
Indices: 2128209--2128351 Score: 216
Period size: 74 Copynumber: 1.9 Consensus size: 75
2128199 TTGAAAAACG
* * *
2128209 GAAATTGAAAATACCTCGGCGTGTGACTTAAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTAAGGCTCAACTCACCTCTCGCAATACGAGTTGATTT
2128274 TTTTGACAACA
65 TTTTGACAACA
* * *
2128285 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTAAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
2128349 TTT
66 TTT
2128352 AAAAAATACC
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
74 39 0.64
76 22 0.36
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.31
Consensus pattern (75 bp):
GAAATTGAAAATACCTCAGCGTGTACCTAAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
TTTGACAACA
Found at i:2128465 original size:68 final size:65
Alignment explanation
Indices: 2128282--2128475 Score: 250
Period size: 68 Copynumber: 3.0 Consensus size: 65
2128272 TTTTTTGACA
**
2128282 ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 ACAGAAATTGAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAA
2128347 T
65 T
**** *
2128348 TTTTAAA---AAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAACA
1 ACAGAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA-A
2128410 T
65 T
* *
2128411 ACAGAAAATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAATTGAA
1 ACAG-AAATTGA-AATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
2128476 TTTTGAAATA
Statistics
Matches: 108, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
62 48 0.44
63 4 0.04
64 3 0.03
66 3 0.03
67 1 0.01
68 49 0.45
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (65 bp):
ACAGAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAAT
Found at i:2138281 original size:19 final size:19
Alignment explanation
Indices: 2138259--2138346 Score: 63
Period size: 19 Copynumber: 4.3 Consensus size: 19
2138249 TAATAATAAT
2138259 ATAAAATAATAATATGTAC
1 ATAAAATAATAATATGTAC
*
2138278 ATAAAAATACATATATATATGTGC
1 AT-AAAAT--A-ATA-ATATGTAC
*
2138302 ATATAATAA-AAGTATGTA-
1 ATAAAATAATAA-TATGTAC
*
2138320 ATAATAATAATAATATCTAC
1 ATAA-AATAATAATATGTAC
2138340 AATAAAA
1 -ATAAAA
2138347 AAAATTAGGA
Statistics
Matches: 54, Mismatches: 5, Indels: 19
0.69 0.06 0.24
Matches are distributed among these distances:
18 4 0.07
19 18 0.33
20 10 0.19
21 5 0.09
22 1 0.02
23 7 0.13
24 9 0.17
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.32
Consensus pattern (19 bp):
ATAAAATAATAATATGTAC
Found at i:2138427 original size:2 final size:2
Alignment explanation
Indices: 2138420--2138450 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
2138410 ATGATATGTA
2138420 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2138451 CATAAAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2138680 original size:11 final size:11
Alignment explanation
Indices: 2138651--2138695 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
2138641 AATTGCATTA
2138651 AAAATATATAT
1 AAAATATATAT
2138662 ACATAATATATAT
1 A-A-AATATATAT
*
2138675 AAAATACATAT
1 AAAATATATAT
*
2138686 AATATATATA
1 AAAATATATA
2138696 CGTATTAGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 17 0.59
12 2 0.07
13 10 0.34
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (11 bp):
AAAATATATAT
Found at i:2138763 original size:29 final size:30
Alignment explanation
Indices: 2138731--2138790 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 30
2138721 AACACACGAC
2138731 ATAAGTAAATAAAATA-TAATAAT-ACTAAA
1 ATAAGTAAATAAAATAGTAA-AATAACTAAA
* * *
2138760 ATAATTAATTTAAATAGTAAAATAACTAAA
1 ATAAGTAAATAAAATAGTAAAATAACTAAA
2138790 A
1 A
2138791 AGGATTAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.30
Consensus pattern (30 bp):
ATAAGTAAATAAAATAGTAAAATAACTAAA
Found at i:2141331 original size:26 final size:26
Alignment explanation
Indices: 2141285--2141337 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
2141275 TCAAACATGC
*
2141285 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGAGGT
* *
2141311 ATTTCGGT-AATTTATCTCCTAGAGGT
1 ATTTAGGTCAATTTAAC-CCTAGAGGT
2141337 A
1 A
2141338 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGAGGT
Found at i:2142868 original size:26 final size:26
Alignment explanation
Indices: 2142828--2142911 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
2142818 CATGAAATTC
*
2142828 TTATCATGAAGCATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
2142854 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
2142880 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
2142906 TTATCA
1 TTATCA
2142912 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:2144272 original size:15 final size:15
Alignment explanation
Indices: 2144252--2144282 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2144242 TATATTATGT
*
2144252 TTTTTTAATACTATA
1 TTTTTTAATACCATA
2144267 TTTTTTAATACCATA
1 TTTTTTAATACCATA
2144282 T
1 T
2144283 GTATTGTGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.58
Consensus pattern (15 bp):
TTTTTTAATACCATA
Found at i:2144303 original size:27 final size:26
Alignment explanation
Indices: 2144271--2144348 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 26
2144261 ACTATATTTT
*
2144271 TTAATACCATATGTATTGTGTATATTC
1 TTAATACTATAT-TATTGTGTATATTC
* *
2144298 TTAATACTATA-TATTATATGTATTTTC
1 TTAATACTATATTA-T-TGTGTATATTC
2144325 TTAATAACTATATTA-TGTGTATAT
1 TTAAT-ACTATATTATTGTGTATAT
2144349 ATATATTGTG
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
25 2 0.05
26 8 0.19
27 24 0.57
28 6 0.14
29 2 0.05
ACGTcount: A:0.33, C:0.08, G:0.08, T:0.51
Consensus pattern (26 bp):
TTAATACTATATTATTGTGTATATTC
Found at i:2144635 original size:27 final size:28
Alignment explanation
Indices: 2144574--2144636 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 28
2144564 AATACTATAT
*
2144574 TATA-TTTTTTACATATTATCTCATGTA
1 TATATTTTTTTACATACTATCTCATGTA
* * *
2144601 TATGTTTTTTTA-ATACTATGTTATGTA
1 TATATTTTTTTACATACTATCTCATGTA
*
2144628 TGTATTTTT
1 TATATTTTT
2144637 CAACGCCATA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
27 22 0.76
28 7 0.24
ACGTcount: A:0.25, C:0.06, G:0.08, T:0.60
Consensus pattern (28 bp):
TATATTTTTTTACATACTATCTCATGTA
Found at i:2151857 original size:3 final size:3
Alignment explanation
Indices: 2151851--2151904 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
2151841 GTTGTTTACC
2151851 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
2151899 ATA ATA
1 ATA ATA
2151905 CCTGAGGTGG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:2167770 original size:25 final size:25
Alignment explanation
Indices: 2167691--2167770 Score: 58
Period size: 23 Copynumber: 3.2 Consensus size: 25
2167681 GACAAAGAAA
2167691 GAAAGAAAAGAAACAGAGAGCAAAAC
1 GAAAG-AAAGAAACAGAGAGCAAAAC
* * * **
2167717 AAAACAAAACAAAACAGAGA--AGGGA-
1 GAAA-GAAA-GAAACAGAGAGCA-AAAC
2167742 GAAAGAAAGAAACAGAGAGCAAAAC
1 GAAAGAAAGAAACAGAGAGCAAAAC
2167767 GAAA
1 GAAA
2167771 CAGAGAAGGA
Statistics
Matches: 38, Mismatches: 10, Indels: 13
0.62 0.16 0.21
Matches are distributed among these distances:
23 9 0.24
24 4 0.11
25 9 0.24
26 7 0.18
27 9 0.24
ACGTcount: A:0.66, C:0.11, G:0.23, T:0.00
Consensus pattern (25 bp):
GAAAGAAAGAAACAGAGAGCAAAAC
Found at i:2169209 original size:41 final size:39
Alignment explanation
Indices: 2169161--2169272 Score: 111
Period size: 37 Copynumber: 2.9 Consensus size: 39
2169151 TCGACCTTGA
2169161 GTCGATGAGACACTGGGTGTCATACTATTACTTCGGATAG
1 GTCGATGAGACACTGGGTGTCA-ACTATTACTTCGGATAG
* ** ** * *
2169201 ATTCGATGAGGTACTGGGTACCAAC--TTACTTCGGCTTG
1 -GTCGATGAGACACTGGGTGTCAACTATTACTTCGGATAG
* *
2169239 GCCGATGAGACACTGGGTGTCAACTATTGCTTCG
1 GTCGATGAGACACTGGGTGTCAACTATTACTTCG
2169273 AACTATCCGA
Statistics
Matches: 55, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
37 18 0.33
38 11 0.20
39 7 0.13
40 2 0.04
41 17 0.31
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (39 bp):
GTCGATGAGACACTGGGTGTCAACTATTACTTCGGATAG
Found at i:2171174 original size:4 final size:4
Alignment explanation
Indices: 2171167--2171196 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
2171157 ACACGCAAGC
*
2171167 AAAT AAAT AAAT GAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
2171197 TGGTAGAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:2172092 original size:15 final size:15
Alignment explanation
Indices: 2172072--2172106 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
2172062 ACATGTGTAT
2172072 TAATAAGAA-TATTAA
1 TAATAA-AACTATTAA
2172087 TAATAAAACTATTAA
1 TAATAAAACTATTAA
2172102 TAATA
1 TAATA
2172107 TTTTATAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 2 0.11
15 17 0.89
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (15 bp):
TAATAAAACTATTAA
Found at i:2187789 original size:25 final size:25
Alignment explanation
Indices: 2187710--2187789 Score: 58
Period size: 23 Copynumber: 3.2 Consensus size: 25
2187700 GACAAAGAAA
2187710 GAAAGAAAAGAAACAGAGAGCAAAAC
1 GAAAG-AAAGAAACAGAGAGCAAAAC
* * * **
2187736 AAAACAAAACAAAACAGAGA--AGGGA-
1 GAAA-GAAA-GAAACAGAGAGCA-AAAC
2187761 GAAAGAAAGAAACAGAGAGCAAAAC
1 GAAAGAAAGAAACAGAGAGCAAAAC
2187786 GAAA
1 GAAA
2187790 CAGAGAAGGA
Statistics
Matches: 38, Mismatches: 10, Indels: 13
0.62 0.16 0.21
Matches are distributed among these distances:
23 9 0.24
24 4 0.11
25 9 0.24
26 7 0.18
27 9 0.24
ACGTcount: A:0.66, C:0.11, G:0.23, T:0.00
Consensus pattern (25 bp):
GAAAGAAAGAAACAGAGAGCAAAAC
Found at i:2189229 original size:41 final size:39
Alignment explanation
Indices: 2189181--2189292 Score: 111
Period size: 37 Copynumber: 2.9 Consensus size: 39
2189171 TCGACCTTGA
2189181 GTCGATGAGACACTGGGTGTCATACTATTACTTCGGATAG
1 GTCGATGAGACACTGGGTGTCA-ACTATTACTTCGGATAG
* ** ** * *
2189221 ATTCGATGAGGTACTGGGTACCAAC--TTACTTCGGCTTG
1 -GTCGATGAGACACTGGGTGTCAACTATTACTTCGGATAG
* *
2189259 GCCGATGAGACACTGGGTGTCAACTATTGCTTCG
1 GTCGATGAGACACTGGGTGTCAACTATTACTTCG
2189293 AACTATCCGA
Statistics
Matches: 55, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
37 18 0.33
38 11 0.20
39 7 0.13
40 2 0.04
41 17 0.31
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (39 bp):
GTCGATGAGACACTGGGTGTCAACTATTACTTCGGATAG
Found at i:2191193 original size:4 final size:4
Alignment explanation
Indices: 2191186--2191215 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
2191176 ACACGCAAGC
*
2191186 AAAT AAAT AAAT GAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
2191216 TGGTAGAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:2195985 original size:21 final size:21
Alignment explanation
Indices: 2195959--2196032 Score: 121
Period size: 21 Copynumber: 3.4 Consensus size: 21
2195949 CTGATCAGAG
2195959 TACGACACACGAGGTGCCTGA
1 TACGACACACGAGGTGCCTGA
*
2195980 TACGACACACGAAGTGCCTGA
1 TACGACACACGAGGTGCCTGA
2196001 TACGACACACGAGGTGCCTGAAA
1 TACGACACACGAGGTGCCTG--A
2196024 TACGACACA
1 TACGACACA
2196033 TAAAGTGCCT
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
21 39 0.80
23 10 0.20
ACGTcount: A:0.34, C:0.28, G:0.24, T:0.14
Consensus pattern (21 bp):
TACGACACACGAGGTGCCTGA
Found at i:2196006 original size:42 final size:43
Alignment explanation
Indices: 2195959--2196045 Score: 140
Period size: 44 Copynumber: 2.0 Consensus size: 43
2195949 CTGATCAGAG
*
2195959 TACGACACACGAGGTGCCTG-ATACGACACACGAAGTGCCTGA
1 TACGACACACGAGGTGCCTGAATACGACACACAAAGTGCCTGA
*
2196001 TACGACACACGAGGTGCCTGAAATACGACACATAAAGTGCCTGA
1 TACGACACACGAGGTGCCTG-AATACGACACACAAAGTGCCTGA
2196045 T
1 T
2196046 CGATAAAGCC
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
42 20 0.49
44 21 0.51
ACGTcount: A:0.33, C:0.26, G:0.24, T:0.16
Consensus pattern (43 bp):
TACGACACACGAGGTGCCTGAATACGACACACAAAGTGCCTGA
Found at i:2196010 original size:23 final size:21
Alignment explanation
Indices: 2195959--2196045 Score: 120
Period size: 21 Copynumber: 4.0 Consensus size: 21
2195949 CTGATCAGAG
*
2195959 TACGACACACGAGGTGCCTGA
1 TACGACACACGAAGTGCCTGA
2195980 TACGACACACGAAGTGCCTGA
1 TACGACACACGAAGTGCCTGA
*
2196001 TACGACACACGAGGTGCCTGAAA
1 TACGACACACGAAGTGCCTG--A
**
2196024 TACGACACATAAAGTGCCTGA
1 TACGACACACGAAGTGCCTGA
2196045 T
1 T
2196046 CGATAAAGCC
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
21 41 0.69
23 18 0.31
ACGTcount: A:0.33, C:0.26, G:0.24, T:0.16
Consensus pattern (21 bp):
TACGACACACGAAGTGCCTGA
Found at i:2196440 original size:15 final size:15
Alignment explanation
Indices: 2196415--2196468 Score: 81
Period size: 15 Copynumber: 3.5 Consensus size: 15
2196405 TCATATATAT
2196415 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
2196431 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
2196446 AATAATTTCAATCAA
1 TATAAATTCAATCAA
2196461 TATAAATT
1 TATAAATT
2196469 TAATAAATTC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 30 0.88
16 4 0.12
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:2197755 original size:5 final size:5
Alignment explanation
Indices: 2197742--2197778 Score: 65
Period size: 5 Copynumber: 7.2 Consensus size: 5
2197732 TTCTTTAGTT
2197742 TATATA TATAA TATAA TATAA TATAA TATAA TATAA T
1 TATA-A TATAA TATAA TATAA TATAA TATAA TATAA T
2197779 TAAAACATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 27 0.87
6 4 0.13
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (5 bp):
TATAA
Found at i:2204802 original size:16 final size:16
Alignment explanation
Indices: 2204781--2204820 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
2204771 TTTGGGAACC
*
2204781 TTAAAATAATTTATTT
1 TTAAAATAATCTATTT
*
2204797 TTAAAAAAATCTATTT
1 TTAAAATAATCTATTT
*
2204813 TTACAATA
1 TTAAAATA
2204821 TTCATATAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (16 bp):
TTAAAATAATCTATTT
Found at i:2210416 original size:19 final size:19
Alignment explanation
Indices: 2210381--2210423 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
2210371 TACGGTTAGG
2210381 TTAAATAAAAATATTAAAT
1 TTAAATAAAAATATTAAAT
*
2210400 TTAAA-AAATAATTTTAAA-
1 TTAAATAAA-AATATTAAAT
2210418 TTAAAT
1 TTAAAT
2210424 TTATTTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (19 bp):
TTAAATAAAAATATTAAAT
Found at i:2210959 original size:11 final size:9
Alignment explanation
Indices: 2210931--2210971 Score: 50
Period size: 8 Copynumber: 4.6 Consensus size: 9
2210921 TACTTCATGT
2210931 TAATTTTT-
1 TAATTTTTA
2210939 TAATTTTTA
1 TAATTTTTA
2210948 TGAATATTTTA
1 T-AAT-TTTTA
2210959 TAATTTTTA
1 TAATTTTTA
2210968 -AATT
1 TAATT
2210972 ATTTGTTGAC
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
8 12 0.40
9 6 0.20
10 6 0.20
11 6 0.20
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (9 bp):
TAATTTTTA
Found at i:2211939 original size:21 final size:22
Alignment explanation
Indices: 2211895--2211940 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
2211885 GCATATTATT
*
2211895 ATTTTAAATTTATTATTGAAAA
1 ATTTTAAATTTATTATTAAAAA
2211917 ATTTTATAATTT-TT-TTAAAAA
1 ATTTTA-AATTTATTATTAAAAA
2211938 ATT
1 ATT
2211941 ATTTTTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 9 0.41
22 8 0.36
23 5 0.23
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (22 bp):
ATTTTAAATTTATTATTAAAAA
Found at i:2214292 original size:12 final size:12
Alignment explanation
Indices: 2214275--2214320 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
2214265 TTAGTGATTT
*
2214275 AATATAAATATA
1 AATATATATATA
2214287 AATATATATAATA
1 AATATATAT-ATA
2214300 AA-ATATATATA
1 AATATATATATA
*
2214311 ATTA-ATATAT
1 AATATATATAT
2214321 TATTTTTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
11 10 0.33
12 15 0.50
13 5 0.17
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
AATATATATATA
Found at i:2214303 original size:14 final size:15
Alignment explanation
Indices: 2214276--2214320 Score: 62
Period size: 14 Copynumber: 3.3 Consensus size: 15
2214266 TAGTGATTTA
2214276 ATATA-AATATAAAT
1 ATATATAATATAAAT
2214290 ATATATAATA-AAAT
1 ATATATAATATAAAT
2214304 ATATATAAT-T-AAT
1 ATATATAATATAAAT
2214317 ATAT
1 ATAT
2214321 TATTTTTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
13 7 0.24
14 18 0.62
15 4 0.14
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
ATATATAATATAAAT
Found at i:2214316 original size:18 final size:20
Alignment explanation
Indices: 2214273--2214319 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
2214263 TGTTAGTGAT
2214273 TTAATATAAATATAAATATA
1 TTAATATAAATATAAATATA
*
2214293 TATAATA-AAATATATATA-A
1 T-TAATATAAATATAAATATA
2214312 TTAATATA
1 TTAATATA
2214320 TTATTTTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 5 0.21
19 3 0.12
20 11 0.46
21 5 0.21
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
TTAATATAAATATAAATATA
Found at i:2214451 original size:18 final size:18
Alignment explanation
Indices: 2214420--2214461 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
2214410 TATCCAAACT
*
2214420 TATTTT-TCAAACC-TCG
1 TATTTTATCAAACCTTCC
2214436 TATTTTATCTAAACCTTCC
1 TATTTTATC-AAACCTTCC
2214455 TATTTTA
1 TATTTTA
2214462 CTGACAGGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 6 0.27
17 2 0.09
18 5 0.23
19 9 0.41
ACGTcount: A:0.26, C:0.21, G:0.02, T:0.50
Consensus pattern (18 bp):
TATTTTATCAAACCTTCC
Found at i:2221080 original size:13 final size:13
Alignment explanation
Indices: 2221064--2221129 Score: 80
Period size: 13 Copynumber: 5.1 Consensus size: 13
2221054 TTTAAACCAA
2221064 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
2221077 ACTTATCAAAAGC
1 ACTTTTCAAAAGC
* *
2221090 ACTTTTTC-ACATC
1 AC-TTTTCAAAAGC
*
2221103 ACTTTTCAAAAAC
1 ACTTTTCAAAAGC
2221116 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
2221129 A
1 A
2221130 TTGTCAAACT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
12 5 0.11
13 35 0.80
14 4 0.09
ACGTcount: A:0.39, C:0.24, G:0.05, T:0.32
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:2223569 original size:25 final size:27
Alignment explanation
Indices: 2223521--2223572 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
2223511 TAAATAAAAA
* *
2223521 ATTTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAAACATAATAAATCAAATAT
2223548 ATTTAAAAAACATAA-AAA-CAAATAT
1 ATTTAAAAAACATAATAAATCAAATAT
2223573 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 7 0.30
26 3 0.13
27 13 0.57
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (27 bp):
ATTTAAAAAACATAATAAATCAAATAT
Found at i:2223584 original size:22 final size:22
Alignment explanation
Indices: 2223550--2223601 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
2223540 TCAAATATAT
2223550 TTAAAA-AACATAAAAACAAATA
1 TTAAAACAACATAAAAA-AAATA
*
2223572 TTAAAACAA-ATAAAAATAATA
1 TTAAAACAACATAAAAAAAATA
*
2223593 CTAAAACAA
1 TTAAAACAA
2223602 TTCTTAAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 12 0.44
22 13 0.48
23 2 0.07
ACGTcount: A:0.71, C:0.10, G:0.00, T:0.19
Consensus pattern (22 bp):
TTAAAACAACATAAAAAAAATA
Found at i:2223586 original size:21 final size:20
Alignment explanation
Indices: 2223554--2223601 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
2223544 ATATATTTAA
* *
2223554 AAAACATAAAAACA-AATATT
1 AAAACA-AAAAAAATAATACT
2223574 AAAACAAATAAAAATAATACT
1 AAAACAAA-AAAAATAATACT
2223595 AAAACAA
1 AAAACAA
2223602 TTCTTAAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 10 0.42
21 12 0.50
ACGTcount: A:0.73, C:0.10, G:0.00, T:0.17
Consensus pattern (20 bp):
AAAACAAAAAAAATAATACT
Found at i:2224213 original size:15 final size:15
Alignment explanation
Indices: 2224194--2224229 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
2224184 ATTATCTCTA
2224194 ATATATGTATATATT
1 ATATATGTATATATT
* *
2224209 GTATATGTTTATATT
1 ATATATGTATATATT
2224224 ATATAT
1 ATATAT
2224230 ATATTTCTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (15 bp):
ATATATGTATATATT
Found at i:2224262 original size:22 final size:21
Alignment explanation
Indices: 2224195--2224264 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 21
2224185 TTATCTCTAA
* *
2224195 TATATGTATATATTGTATATGTT
1 TATAT-TATATA-TATATATTTT
2224218 TATATTATATATATAT-TTCTT
1 TATATTATATATATATATT-TT
* *
2224239 TACTATTCTATGTATATATTTT
1 TA-TATTATATATATATATTTT
2224261 TATA
1 TATA
2224265 CCATATCGTG
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
20 1 0.03
21 10 0.25
22 22 0.55
23 7 0.17
ACGTcount: A:0.31, C:0.04, G:0.06, T:0.59
Consensus pattern (21 bp):
TATATTATATATATATATTTT
Found at i:2224525 original size:20 final size:19
Alignment explanation
Indices: 2224485--2224529 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
2224475 TTACCAATGT
*
2224485 TAGTACATATATTTTATTA
1 TAGTATATATATTTTATTA
2224504 TACGTATATATATTTT-TATA
1 TA-GTATATATATTTTAT-TA
2224524 TAGTAT
1 TAGTAT
2224530 TATTTTCATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.36, C:0.04, G:0.07, T:0.53
Consensus pattern (19 bp):
TAGTATATATATTTTATTA
Found at i:2229961 original size:22 final size:20
Alignment explanation
Indices: 2229936--2229979 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
2229926 TGTCTAAAGC
*
2229936 TTCCATTCCAATTCTATTTTTT
1 TTCC-TTCCAA-TCTACTTTTT
*
2229958 TTCCTTTCAATCTACTTTTT
1 TTCCTTCCAATCTACTTTTT
2229978 TT
1 TT
2229980 GAGGGTTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 11 0.55
21 5 0.25
22 4 0.20
ACGTcount: A:0.16, C:0.23, G:0.00, T:0.61
Consensus pattern (20 bp):
TTCCTTCCAATCTACTTTTT
Found at i:2246263 original size:37 final size:37
Alignment explanation
Indices: 2246218--2246293 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
2246208 TAGATTATGT
2246218 TAGTCAATCACTCTATCTTTGTCCCATATCATGATTA
1 TAGTCAATCACTCTATCTTTGTCCCATATCATGATTA
2246255 TAGTCAATCACTCTATCTTTGTCCCATATCATGATTA
1 TAGTCAATCACTCTATCTTTGTCCCATATCATGATTA
2246292 TA
1 TA
2246294 CCATTGCATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.41
Consensus pattern (37 bp):
TAGTCAATCACTCTATCTTTGTCCCATATCATGATTA
Found at i:2246285 original size:21 final size:21
Alignment explanation
Indices: 2246224--2246285 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
2246214 ATGTTAGTCA
2246224 ATCACTCTATCTTTGTCCCAT
1 ATCACTCTATCTTTGTCCCAT
* *
2246245 ATCA-T-GAT-TATAGT--CA-
1 ATCACTCTATCT-TTGTCCCAT
2246261 ATCACTCTATCTTTGTCCCAT
1 ATCACTCTATCTTTGTCCCAT
2246282 ATCA
1 ATCA
2246286 TGATTATACC
Statistics
Matches: 30, Mismatches: 4, Indels: 14
0.62 0.08 0.29
Matches are distributed among these distances:
16 4 0.13
17 3 0.10
18 6 0.20
19 6 0.20
20 3 0.10
21 8 0.27
ACGTcount: A:0.26, C:0.27, G:0.06, T:0.40
Consensus pattern (21 bp):
ATCACTCTATCTTTGTCCCAT
Found at i:2248782 original size:25 final size:25
Alignment explanation
Indices: 2248748--2248795 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
2248738 GATTTCTAAC
*
2248748 CTCTATGATACTTTTACCCTTAAAA
1 CTCTATGATACTTTCACCCTTAAAA
2248773 CTCTATGATACTTTCACCCTTAA
1 CTCTATGATACTTTCACCCTTAA
2248796 GACACGGCTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.27, G:0.04, T:0.40
Consensus pattern (25 bp):
CTCTATGATACTTTCACCCTTAAAA
Found at i:2251780 original size:22 final size:22
Alignment explanation
Indices: 2251738--2251790 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
2251728 ACTTTCTTTT
** *
2251738 TTTTGCTACCATTTTGTTATTG
1 TTTTGCTACCATTTTAATATTA
*
2251760 TTTTGCTATCATTTTAATATTA
1 TTTTGCTACCATTTTAATATTA
*
2251782 TATTGCTAC
1 TTTTGCTAC
2251791 TATATTATTG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.21, C:0.13, G:0.09, T:0.57
Consensus pattern (22 bp):
TTTTGCTACCATTTTAATATTA
Found at i:2255611 original size:19 final size:22
Alignment explanation
Indices: 2255564--2255612 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 22
2255554 TCAAACATTT
*
2255564 AATCAAACACCTTACAGGCAATT
1 AATCAAACACCTTACAGG-AATC
2255587 AATCAAACA-CTTAC-GG-ATC
1 AATCAAACACCTTACAGGAATC
2255606 AATCAAA
1 AATCAAA
2255613 AAACTGCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 9 0.36
21 2 0.08
22 5 0.20
23 9 0.36
ACGTcount: A:0.47, C:0.24, G:0.08, T:0.20
Consensus pattern (22 bp):
AATCAAACACCTTACAGGAATC
Found at i:2257288 original size:26 final size:24
Alignment explanation
Indices: 2257259--2257316 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
2257249 CGATTTTGTA
* *
2257259 TAATTTTATTCAATAAAATTTGAATT
1 TAATTTTATT-AA-AAAAATGGAATT
*
2257285 TAATTATATTAAAAAAATGGAATT
1 TAATTTTATTAAAAAAATGGAATT
2257309 T-ATTTTAT
1 TAATTTTAT
2257317 ATTTTAATCA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
23 6 0.21
24 11 0.39
25 2 0.07
26 9 0.32
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (24 bp):
TAATTTTATTAAAAAAATGGAATT
Found at i:2258041 original size:31 final size:30
Alignment explanation
Indices: 2257988--2258057 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 30
2257978 ATGATTATTT
*
2257988 TATAATTTTTTAAAATTAAGTGA-CTAAAA
1 TATAATTTATTAAAATTAAGTGACCTAAAA
* *
2258017 TATAAATTTATTAATAATTTAGTGACCTAAAG
1 TAT-AATTTATTAA-AATTAAGTGACCTAAAA
2258049 TATAATTTA
1 TATAATTTA
2258058 CCCTTAATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
29 3 0.09
30 9 0.26
31 15 0.43
32 8 0.23
ACGTcount: A:0.46, C:0.04, G:0.07, T:0.43
Consensus pattern (30 bp):
TATAATTTATTAAAATTAAGTGACCTAAAA
Found at i:2263293 original size:39 final size:39
Alignment explanation
Indices: 2263250--2263328 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
2263240 TTTTTAAATT
*
2263250 CATATATTTAGAAAGATCTTGAAGAATCATATCTCCGTA
1 CATATATTTAGAAAGATCTTCAAGAATCATATCTCCGTA
* *
2263289 CATATATTTAGGAAGTTCTTCAAGAATCATATCTCCGTA
1 CATATATTTAGAAAGATCTTCAAGAATCATATCTCCGTA
2263328 C
1 C
2263329 TTAAATCCAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.34
Consensus pattern (39 bp):
CATATATTTAGAAAGATCTTCAAGAATCATATCTCCGTA
Found at i:2264882 original size:11 final size:11
Alignment explanation
Indices: 2264868--2265002 Score: 58
Period size: 11 Copynumber: 12.0 Consensus size: 11
2264858 TAAATTCCTC
2264868 TAAAATAATAA
1 TAAAATAATAA
*
2264879 TAAAATTAACAA
1 TAAAA-TAATAA
*
2264891 TAAAATAAGTTTTA
1 TAAAATAA---TAA
* *
2264905 TACAATATTCAA
1 TAAAATAAT-AA
* *
2264917 -ATAATAACAA
1 TAAAATAATAA
* *
2264927 CAAAATAGTAA
1 TAAAATAATAA
* * *
2264938 CAACATAGTAA
1 TAAAATAATAA
*
2264949 TAAAATAGTAA
1 TAAAATAATAA
**
2264960 TAAAATAACGA
1 TAAAATAATAA
*
2264971 GAAAATAATAA
1 TAAAATAATAA
* *
2264982 GAAAATAATAT
1 TAAAATAATAA
2264993 TAAAA-AATAA
1 TAAAATAATAA
2265003 AAATAAAATA
Statistics
Matches: 94, Mismatches: 24, Indels: 13
0.72 0.18 0.10
Matches are distributed among these distances:
10 6 0.06
11 70 0.74
12 11 0.12
14 7 0.07
ACGTcount: A:0.64, C:0.06, G:0.05, T:0.25
Consensus pattern (11 bp):
TAAAATAATAA
Found at i:2265010 original size:24 final size:23
Alignment explanation
Indices: 2264972--2265016 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
2264962 AAATAACGAG
*
2264972 AAAATAATAAGAAAATAATATTAA
1 AAAATAAAAAGAAAAT-ATATTAA
*
2264996 AAAATAAAAATAAAATATATT
1 AAAATAAAAAGAAAATATATT
2265017 TTCTTGTCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (23 bp):
AAAATAAAAAGAAAATATATTAA
Found at i:2270535 original size:26 final size:25
Alignment explanation
Indices: 2270489--2270558 Score: 63
Period size: 26 Copynumber: 2.7 Consensus size: 25
2270479 AGTACAACAT
* *
2270489 ATAATTTT-TTTTAAATATAATA-AA
1 ATAATTTTATTTT-TATTTAATATAA
*
2270513 ATATATATTTATTTTTATTTAATATTTA
1 ATA-AT-TTTATTTTTATTTAATA-TAA
2270541 ATAATTTTATTTTTATTT
1 ATAATTTTATTTTTATTT
2270559 TCACTTTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
24 3 0.08
25 2 0.05
26 23 0.61
27 6 0.16
28 4 0.11
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (25 bp):
ATAATTTTATTTTTATTTAATATAA
Found at i:2275908 original size:14 final size:14
Alignment explanation
Indices: 2275885--2275919 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
2275875 CACAATACCC
*
2275885 AAATAATAACAACA
1 AAATAGTAACAACA
2275899 AAATAGTAACAACA
1 AAATAGTAACAACA
*
2275913 TAATAGT
1 AAATAGT
2275920 GAAATGGCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.63, C:0.11, G:0.06, T:0.20
Consensus pattern (14 bp):
AAATAGTAACAACA
Found at i:2277912 original size:9 final size:9
Alignment explanation
Indices: 2277895--2277927 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
2277885 CTGAACCGTC
*
2277895 AAAACTAAA
1 AAAAATAAA
2277904 AAAAAT-AA
1 AAAAATAAA
2277912 AAAAATAAA
1 AAAAATAAA
2277921 AAAAATA
1 AAAAATA
2277928 GAATGCATGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.85, C:0.03, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAAATAAA
Found at i:2277920 original size:17 final size:17
Alignment explanation
Indices: 2277895--2277927 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
2277885 CTGAACCGTC
*
2277895 AAAACTAAAAAAAATAA
1 AAAAATAAAAAAAATAA
2277912 AAAAATAAAAAAAATA
1 AAAAATAAAAAAAATA
2277928 GAATGCATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.85, C:0.03, G:0.00, T:0.12
Consensus pattern (17 bp):
AAAAATAAAAAAAATAA
Found at i:2279579 original size:3 final size:3
Alignment explanation
Indices: 2279571--2279601 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
2279561 GGGATTTTTT
2279571 ATA ATA ATA ATA ATA ATA ATA ATAA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA
2279602 TTATTATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:2279900 original size:31 final size:30
Alignment explanation
Indices: 2279836--2279902 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 30
2279826 AGTTTATATC
* *
2279836 TTTA-TAATTTTTAAATAATTAAATTAATCT
1 TTTATTAATTTTAAAAGAATTAAATTAA-CT
2279866 TTTATTAATTTTAAAAGAATTAAAGTATAA-T
1 TTTATTAATTTTAAAAGAATTAAA-T-TAACT
2279897 TTTATT
1 TTTATT
2279903 TTTATTAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
30 4 0.12
31 24 0.75
32 1 0.03
33 3 0.09
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.52
Consensus pattern (30 bp):
TTTATTAATTTTAAAAGAATTAAATTAACT
Found at i:2281572 original size:14 final size:16
Alignment explanation
Indices: 2281553--2281584 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
2281543 AATTAAAACC
2281553 AATAATT-CA-TTAGA
1 AATAATTACACTTAGA
2281567 AATAATTACACTTAGA
1 AATAATTACACTTAGA
2281583 AA
1 AA
2281585 AAAAAAAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 2 0.12
16 7 0.44
ACGTcount: A:0.53, C:0.09, G:0.06, T:0.31
Consensus pattern (16 bp):
AATAATTACACTTAGA
Found at i:2284241 original size:15 final size:16
Alignment explanation
Indices: 2284211--2284250 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
2284201 TAATAAAAAT
2284211 ATAATTTTATTATTTTA
1 ATAA-TTTATTATTTTA
*
2284228 ATAATTTA-TATTTTT
1 ATAATTTATTATTTTA
2284243 ATAATTTA
1 ATAATTTA
2284251 AAAAATAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 14 0.64
16 4 0.18
17 4 0.18
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
ATAATTTATTATTTTA
Found at i:2288139 original size:23 final size:23
Alignment explanation
Indices: 2288112--2288157 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
2288102 TTTATGTTGC
2288112 TCCAATTCTTCATTTTGCTTGAA
1 TCCAATTCTTCATTTTGCTTGAA
2288135 TCCAATTCTTCATTTTGCTTGAA
1 TCCAATTCTTCATTTTGCTTGAA
2288158 GTACATACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.22, G:0.09, T:0.48
Consensus pattern (23 bp):
TCCAATTCTTCATTTTGCTTGAA
Found at i:2300333 original size:3 final size:3
Alignment explanation
Indices: 2300314--2300347 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
2300304 AGAAGACGTG
*
2300314 ATA ATTA ATA ATT ATA ATA ATA ATA ATA ATA ATA
1 ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA
2300348 TTATTATTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
ATA
Found at i:2302181 original size:20 final size:20
Alignment explanation
Indices: 2302156--2302196 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
2302146 ATAAATGAAT
2302156 AGACTAAAATACCTTAAATA
1 AGACTAAAATACCTTAAATA
2302176 AGACTAAAATACCTTAAATA
1 AGACTAAAATACCTTAAATA
2302196 A
1 A
2302197 TATACTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.56, C:0.15, G:0.05, T:0.24
Consensus pattern (20 bp):
AGACTAAAATACCTTAAATA
Found at i:2303032 original size:21 final size:21
Alignment explanation
Indices: 2303007--2303048 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
2302997 GCATTAATTC
2303007 AATA-AAAAAT-TTAAATAAT
1 AATATAAAAATATTAAATAAT
*
2303026 AATATAAATATATTAAATAAT
1 AATATAAAAATATTAAATAAT
2303047 AA
1 AA
2303049 AGGAAATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 4 0.20
20 5 0.25
21 11 0.55
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (21 bp):
AATATAAAAATATTAAATAAT
Found at i:2303055 original size:21 final size:21
Alignment explanation
Indices: 2303017--2303056 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
2303007 AATAAAAAAT
*
2303017 TTAAATAATAATATAAATATA
1 TTAAATAATAATAGAAATATA
2303038 TTAAATAATAA-AGGAAATA
1 TTAAATAATAATA-GAAATA
2303057 AATAGTGTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (21 bp):
TTAAATAATAATAGAAATATA
Found at i:2307050 original size:20 final size:20
Alignment explanation
Indices: 2307011--2307050 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
2307001 AATAATAATA
*
2307011 TTTAGATTTTAGTATTTTTT
1 TTTAGATTTTAGTATATTTT
*
2307031 TTTAGATTTTA-TATAATTT
1 TTTAGATTTTAGTATATTTT
2307050 T
1 T
2307051 ATAATTTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.25, C:0.00, G:0.07, T:0.68
Consensus pattern (20 bp):
TTTAGATTTTAGTATATTTT
Found at i:2308149 original size:5 final size:5
Alignment explanation
Indices: 2308141--2308169 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
2308131 TCATAAGAGA
2308141 TTTAT TTTAT TTTAT TTTAT TTTAT TTTA
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTA
2308170 CGAGAACTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTAT
Found at i:2308196 original size:2 final size:2
Alignment explanation
Indices: 2308191--2308220 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
2308181 ACACAAATTA
2308191 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2308221 GGATAATACG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2316994 original size:30 final size:30
Alignment explanation
Indices: 2316955--2317012 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
2316945 TTTAACAAAT
2316955 AAATATCTTTAAAATAATAACAAAATTAAC
1 AAATATCTTTAAAATAATAACAAAATTAAC
*
2316985 AAATGTCTTTAAAATAATAACAAAATTA
1 AAATATCTTTAAAATAATAACAAAATTA
2317013 TCAATAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.59, C:0.09, G:0.02, T:0.31
Consensus pattern (30 bp):
AAATATCTTTAAAATAATAACAAAATTAAC
Found at i:2328059 original size:32 final size:28
Alignment explanation
Indices: 2328005--2328077 Score: 83
Period size: 32 Copynumber: 2.5 Consensus size: 28
2327995 GAGAAAATTC
* *
2328005 AATATTTAATTTTTGATATTTCAAAATTTA
1 AATATTTAATTTTTAAGATTTCAAAA--TA
*
2328035 TATATATTTAATTTTTAAGCTTTCAAAATA
1 -A-ATATTTAATTTTTAAGATTTCAAAATA
2328065 AATATTTAATTTT
1 AATATTTAATTTT
2328078 AAAATTTACA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
28 12 0.32
29 1 0.03
30 2 0.05
31 1 0.03
32 22 0.58
ACGTcount: A:0.40, C:0.04, G:0.03, T:0.53
Consensus pattern (28 bp):
AATATTTAATTTTTAAGATTTCAAAATA
Found at i:2330457 original size:31 final size:31
Alignment explanation
Indices: 2330382--2330466 Score: 84
Period size: 31 Copynumber: 2.7 Consensus size: 31
2330372 AACTCAAAAC
* *
2330382 TCACTAAACTATTCAGGAA-TTTT-AATTTAAA
1 TCACTAAACTATTTA-AAAGTTTTCAA-TTAAA
* * *
2330413 TCATTAAATTATTTGAAAGTTTTCAATTAAA
1 TCACTAAACTATTTAAAAGTTTTCAATTAAA
*
2330444 TTACTAAACTATTTAAAAGTTTT
1 TCACTAAACTATTTAAAAGTTTT
2330467 TATTGAAGTC
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
30 2 0.05
31 39 0.91
32 2 0.05
ACGTcount: A:0.41, C:0.09, G:0.06, T:0.44
Consensus pattern (31 bp):
TCACTAAACTATTTAAAAGTTTTCAATTAAA
Done.