Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 60 of 362
Found at i:18219940 original size:27 final size:27
Alignment explanation
Indices: 18219909--18220086 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
18219899 TAAATTGTAC
18219909 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
18219936 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
18219962 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
18219990 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
18220018 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
18220045 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
18220072 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
18220087 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:18220023 original size:82 final size:81
Alignment explanation
Indices: 18219910--18220065 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
18219900 AAATTGTACA
* *
18219910 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
18219974 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
18219991 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
18220056 TGCGAGTTGA
65 TGCGAATTGA
18220066 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:18220077 original size:82 final size:81
Alignment explanation
Indices: 18219906--18220086 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
18219896 GATTAAATTG
* *
18219906 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
18219971 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
18219987 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
18220051 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
18220069 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
18220087 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:18228130 original size:27 final size:27
Alignment explanation
Indices: 18228099--18228249 Score: 178
Period size: 27 Copynumber: 5.6 Consensus size: 27
18228089 TAAATTGTAC
18228099 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
18228126 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
18228152 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
18228180 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
18228208 AGCACTAAGTGTGCGATTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
18228235 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
18228250 GACTCAATAT
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
27 82 0.78
28 23 0.22
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:18228213 original size:82 final size:81
Alignment explanation
Indices: 18228100--18228249 Score: 230
Period size: 82 Copynumber: 1.8 Consensus size: 81
18228090 AAATTGTACA
*
18228100 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATAT-ATAGCACTAAGTG
18228164 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** * *
18228181 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATATAGCACTGAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATATAGCACTAAGTG
18228246 TGCG
65 TGCG
18228250 GACTCAATAT
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 17 0.27
82 45 0.73
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATATAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:18233831 original size:13 final size:13
Alignment explanation
Indices: 18233813--18233839 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
18233803 GTTCGGCAGG
18233813 GACACGCTCGTGT
1 GACACGCTCGTGT
18233826 GACACGCTCGTGT
1 GACACGCTCGTGT
18233839 G
1 G
18233840 CGATTATTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.30, G:0.33, T:0.22
Consensus pattern (13 bp):
GACACGCTCGTGT
Found at i:18245404 original size:47 final size:47
Alignment explanation
Indices: 18245350--18245543 Score: 262
Period size: 47 Copynumber: 4.1 Consensus size: 47
18245340 TTAGGATTTT
** * * *
18245350 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
18245397 ATGTGATGAATGTGAACATGCATATATGCGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
18245444 ATGTGATGAATGTGAGCATGTATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
18245491 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
18245538 ATGTGA
1 ATGTGA
18245544 AATATGTATG
Statistics
Matches: 129, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 129 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:18245576 original size:48 final size:48
Alignment explanation
Indices: 18245513--18246041 Score: 830
Period size: 48 Copynumber: 10.8 Consensus size: 48
18245503 TGAACATGCA
18245513 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
18245561 TATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG--A-A-ATATGTATGAGATATG
18245613 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
18245661 TATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
18245709 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
18245757 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG--A-A-ATATGTATGAGATATG
18245809 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
18245857 TATATGTGGTAAAGCTGAATGGTTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
18245905 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
18245953 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
* *
18246003 TATATGTGGTAAAGCCGAATGGCTAGTGTAAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
18246042 GGCGATGTGC
Statistics
Matches: 447, Mismatches: 18, Indels: 32
0.90 0.04 0.06
Matches are distributed among these distances:
47 3 0.01
48 304 0.68
49 6 0.01
50 44 0.10
51 3 0.01
52 85 0.19
53 2 0.00
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:18245690 original size:148 final size:144
Alignment explanation
Indices: 18245513--18246041 Score: 814
Period size: 148 Copynumber: 3.6 Consensus size: 144
18245503 TGAACATGCA
18245513 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
18245578 AATGGTCAATGTGAAATATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
66 AATGGTCAATGTG--A-A-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
18245643 AAATATGTATGAGATATG
127 AAATATGTATGAGATATG
*
18245661 TATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
18245726 AATGG-CTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAA
66 AATGGTC-AATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG--
*
18245789 ATATATATATATGAGATATG
127 A-A-ATATGTATGAGATATG
*
18245809 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
18245874 AATGGTTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
66 AATGGTCAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
18245939 ATGTATGAGATATG
131 ATGTATGAGATATG
* *
18245953 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATGTATATGTGGTAAAG
* *
18246017 CCGAATGG-CTAGTGTAAAATATGTA
63 CCGAATGGTC-AATGTGAAATATGTA
18246042 GGCGATGTGC
Statistics
Matches: 354, Mismatches: 15, Indels: 26
0.90 0.04 0.07
Matches are distributed among these distances:
143 2 0.01
144 84 0.24
145 4 0.01
146 52 0.15
147 2 0.01
148 209 0.59
149 1 0.00
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (144 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
AATGGTCAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
ATGTATGAGATATG
Found at i:18245725 original size:196 final size:196
Alignment explanation
Indices: 18245513--18246041 Score: 990
Period size: 196 Copynumber: 2.7 Consensus size: 196
18245503 TGAACATGCA
*
18245513 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
18245578 AATGGTCAATGTGAAATATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
66 AATGGTCAATGTGAAATATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
18245643 AAATATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATAT
131 AAATATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATAT
18245708 G
196 G
18245709 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
18245774 AATGGTCAATGTGAAATATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
66 AATGGTCAATGTGAAATATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
** *
18245839 AAATATGTATGAGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATGTATGAGATAT
131 AAATATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATAT
18245904 G
196 G
18245905 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
* *
18245970 AATGGTCAATGTG-AA-ATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTA
66 AATGGTCAATGTGAAATATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
18246033 AAATATGTA
131 AAATATGTA
18246042 GGCGATGTGC
Statistics
Matches: 327, Mismatches: 6, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
194 55 0.17
195 2 0.01
196 270 0.83
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (196 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
AATGGTCAATGTGAAATATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
AAATATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATAT
G
Found at i:18246295 original size:37 final size:37
Alignment explanation
Indices: 18246187--18246295 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
18246177 AGAAATATAT
*
18246187 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
18246224 TCCGGGTAAGACCCAATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* **
18246261 TCCGGGTAAGACCCGATAACTTTGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
18246296 CGTCTGAGCT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:18251925 original size:46 final size:46
Alignment explanation
Indices: 18251875--18252047 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
18251865 TGGTTGAGCA
18251875 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
18251921 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
18251966 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
18252014 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
18252048 GGGCGGGTTA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:18252031 original size:93 final size:93
Alignment explanation
Indices: 18251872--18252042 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
18251862 GGATGGTTGA
* *
18251872 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
18251937 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
18251965 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
18252030 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
18252043 ACTTAGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:18257451 original size:46 final size:46
Alignment explanation
Indices: 18257401--18257573 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
18257391 TGGTTGAGCA
18257401 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
18257447 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
18257492 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
18257540 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
18257574 GGGCGGGTTA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:18257557 original size:93 final size:93
Alignment explanation
Indices: 18257398--18257568 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
18257388 GGATGGTTGA
* *
18257398 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
18257463 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
18257491 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
18257556 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
18257569 ACTTAGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:18270532 original size:46 final size:46
Alignment explanation
Indices: 18270479--18270654 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
18270469 TATTTGGGCA
*
18270479 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * * *
18270525 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GAAGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
18270572 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTCATGAATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTT-ATGGATGCAAACG
* *
18270618 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
18270655 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 60 0.58
47 31 0.30
48 2 0.02
50 3 0.03
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:18270634 original size:93 final size:93
Alignment explanation
Indices: 18270475--18270646 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
18270465 GGGATATTTG
* * *
18270475 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAACGCCCGAACTCGTTGAG
*
18270540 TTGAGTCTGAGTTCGTGAGAAGTAACTA
66 TTGAGTCCGAGTTCGTGAGAAGTAACTA
* *
18270568 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTCATGAATGCGAACGCCCGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTT-ATGAATGCAAACGCCCGAACTCGTTGA
18270632 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
18270647 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGAAGTAACTA
Found at i:18270925 original size:26 final size:27
Alignment explanation
Indices: 18270896--18270954 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 27
18270886 TGTGATATGA
18270896 ATGTCTTG-GTGATGATTATGCAAATG
1 ATGTCTTGTGTGATGATTATGCAAATG
*
18270922 ATGTTTTGTTTGTGATGATTATGCAAATG
1 ATGTCTTG--TGTGATGATTATGCAAATG
18270951 ATGT
1 ATGT
18270955 TTTATATTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 7 0.24
29 22 0.76
ACGTcount: A:0.25, C:0.05, G:0.25, T:0.44
Consensus pattern (27 bp):
ATGTCTTGTGTGATGATTATGCAAATG
Found at i:18273619 original size:15 final size:15
Alignment explanation
Indices: 18273599--18273666 Score: 75
Period size: 15 Copynumber: 4.6 Consensus size: 15
18273589 GTATCTTGGG
18273599 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
18273614 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
18273629 TTTC-TTATTCTGGG
1 TTTCTTTATCCTGGA
* *
18273643 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
18273658 TTTCTTTAT
1 TTTCTTTAT
18273667 TCGGTTTTCT
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
14 13 0.30
15 30 0.70
ACGTcount: A:0.12, C:0.18, G:0.13, T:0.57
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:18273657 original size:29 final size:30
Alignment explanation
Indices: 18273590--18273676 Score: 90
Period size: 29 Copynumber: 3.0 Consensus size: 30
18273580 CATAGTATCG
* * * *
18273590 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
18273620 TAT-TCTGGATTTC-TTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
18273649 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
18273677 TGTTATCTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 31 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:18273658 original size:44 final size:43
Alignment explanation
Indices: 18273595--18273677 Score: 121
Period size: 44 Copynumber: 1.9 Consensus size: 43
18273585 TATCGTATCT
*
18273595 TGGGTTTCTTTATCCTGGATCTCTTTATTCTGGATTTCTTATTC
1 TGGGTTTCTCTATCCTGGATCTCTTTATTC-GGATTTCTTATTC
* * *
18273639 TGGGTTTCTCTATCTTGGATTTCTTTATTCGGTTTTCTT
1 TGGGTTTCTCTATCCTGGATCTCTTTATTCGGATTTCTT
18273678 GTTATCTTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
43 8 0.23
44 27 0.77
ACGTcount: A:0.10, C:0.17, G:0.17, T:0.57
Consensus pattern (43 bp):
TGGGTTTCTCTATCCTGGATCTCTTTATTCGGATTTCTTATTC
Found at i:18338625 original size:16 final size:16
Alignment explanation
Indices: 18338604--18338637 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
18338594 GCCAAACTTC
*
18338604 CGGCTTTTCGGCATTT
1 CGGCTTTTCAGCATTT
18338620 CGGCTTTTCAGCATTT
1 CGGCTTTTCAGCATTT
18338636 CG
1 CG
18338638 AGATTTTCCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.09, C:0.26, G:0.24, T:0.41
Consensus pattern (16 bp):
CGGCTTTTCAGCATTT
Found at i:18338922 original size:21 final size:21
Alignment explanation
Indices: 18338893--18338932 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
18338883 AACTAAACAC
*
18338893 AAGTGACTCGAAAATCATCTT
1 AAGTCACTCGAAAATCATCTT
**
18338914 AAGTCACTCTTAAATCATC
1 AAGTCACTCGAAAATCATC
18338933 CATGACCATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.30
Consensus pattern (21 bp):
AAGTCACTCGAAAATCATCTT
Found at i:18344942 original size:26 final size:26
Alignment explanation
Indices: 18344912--18344967 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
18344902 TGAAATTCCC
*
18344912 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
18344938 ATCATGAAAGATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
18344964 ATCA
1 ATCA
18344968 ATTTGTATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.38, C:0.25, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAACCCATT
Found at i:18351835 original size:17 final size:17
Alignment explanation
Indices: 18351813--18351845 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
18351803 CACTAAAATT
*
18351813 AAAATGCAATGACAATA
1 AAAATGCAACGACAATA
18351830 AAAATGCAACGACAAT
1 AAAATGCAACGACAAT
18351846 GTTCACTAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.15, G:0.12, T:0.15
Consensus pattern (17 bp):
AAAATGCAACGACAATA
Found at i:18354780 original size:27 final size:27
Alignment explanation
Indices: 18354750--18354948 Score: 272
Period size: 27 Copynumber: 7.4 Consensus size: 27
18354740 GGCATAATAA
*
18354750 TCATTTTACCATACAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* *
18354777 TCATTTTACTCTACAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* *
18354804 TCATTTTACCCTACAGGGGTATTATGA
1 TCATTTTACCCTACAGGGGTATTACGG
* *
18354831 TCATTTTACCCTATAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* *
18354858 TCATTTTACCCTACAGTGGTATTACTG
1 TCATTTTACCCTACAGGGGTATTACGG
* *
18354885 TCATTTTACCCTATAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* * *
18354912 TTATTTTACCCTACAGGGATATTACAG
1 TCATTTTACCCTACAGGGGTATTACGG
18354939 TCATTTTACC
1 TCATTTTACC
18354949 TATTTTAAGG
Statistics
Matches: 147, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 147 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGTATTACGG
Found at i:18354797 original size:54 final size:54
Alignment explanation
Indices: 18354750--18354948 Score: 308
Period size: 54 Copynumber: 3.7 Consensus size: 54
18354740 GGCATAATAA
* * *
18354750 TCATTTTACCATACAGGGGTATTACGGTCATTTTACTCTACAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTATAGGGGCATTACGG
* *
18354804 TCATTTTACCCTACAGGGGTATTATGATCATTTTACCCTATAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTATAGGGGCATTACGG
* *
18354858 TCATTTTACCCTACAGTGGTATTACTGTCATTTTACCCTATAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTATAGGGGCATTACGG
* * *
18354912 TTATTTTACCCTACAGGGATATTACAGTCATTTTACC
1 TCATTTTACCCTACAGGGGTATTACGGTCATTTTACC
18354949 TATTTTAAGG
Statistics
Matches: 132, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 132 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (54 bp):
TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTATAGGGGCATTACGG
Found at i:18356993 original size:16 final size:17
Alignment explanation
Indices: 18356968--18357006 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
18356958 ACTATAGTTT
*
18356968 TCAGTCTTCC-ACAGAC
1 TCAGTTTTCCTACAGAC
*
18356984 TCAGTTTTCCTACAGTC
1 TCAGTTTTCCTACAGAC
18357001 TCAGTT
1 TCAGTT
18357007 AACTCAGACT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.21, C:0.31, G:0.13, T:0.36
Consensus pattern (17 bp):
TCAGTTTTCCTACAGAC
Found at i:18357846 original size:33 final size:33
Alignment explanation
Indices: 18357809--18357872 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
18357799 ATGCAGTAAT
18357809 AGTCTGGGCCTGAGCCCTAT-TCAGTAACAGTAC
1 AGTCTGGGCCTGAGCCCTATAT-AGTAACAGTAC
* *
18357842 AGTCTGGGCGTTAGCCCTATATAGTAACAGT
1 AGTCTGGGCCTGAGCCCTATATAGTAACAGT
18357873 GTGGGCCTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 27 0.96
34 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (33 bp):
AGTCTGGGCCTGAGCCCTATATAGTAACAGTAC
Found at i:18357885 original size:28 final size:28
Alignment explanation
Indices: 18357835--18357900 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 28
18357825 CTATTCAGTA
* * *
18357835 ACAGT-ACAGTCTGGGCGTTAGCCCTAT
1 ACAGTAACAGTCTGGGCCTAAGCCCAAT
* *
18357862 ATAGTAACAGTGTGGGCCTAAGCCCAAT
1 ACAGTAACAGTCTGGGCCTAAGCCCAAT
*
18357890 ACAGTATCAGT
1 ACAGTAACAGT
18357901 ACAGTGTAAT
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
27 4 0.13
28 27 0.87
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (28 bp):
ACAGTAACAGTCTGGGCCTAAGCCCAAT
Found at i:18358282 original size:27 final size:27
Alignment explanation
Indices: 18358251--18358449 Score: 254
Period size: 27 Copynumber: 7.4 Consensus size: 27
18358241 GTCATAATCA
* *
18358251 TCATTTTACCATACAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGCATTACGG
*
18358278 TCATTTTACTCTACAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGCATTACGG
* *
18358305 TCATTTTACCCTATAGGGACATTACGG
1 TCATTTTACCCTACAGGGGCATTACGG
* * ** *
18358332 TCATTTTAACCAACAGTTGCATCACGG
1 TCATTTTACCCTACAGGGGCATTACGG
* *
18358359 TCATTTTACCCTACAGGGGTATTACTG
1 TCATTTTACCCTACAGGGGCATTACGG
*
18358386 TCATTTTACCCTATAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGCATTACGG
* * *
18358413 TTATTTTACCCTATAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGCATTACGG
18358440 TCATTTTACC
1 TCATTTTACC
18358450 TATTTTGGGA
Statistics
Matches: 146, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGCATTACGG
Found at i:18358440 original size:81 final size:81
Alignment explanation
Indices: 18358251--18358449 Score: 281
Period size: 81 Copynumber: 2.5 Consensus size: 81
18358241 GTCATAATCA
* *
18358251 TCATTTTACCATACAGGGGTATTACGGTCATTTTACTCTACAGGGGCATTACGGTCATTTTACCC
1 TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTACAGGGGCATTACGGTCATTTTACCC
18358316 TATAGGGACATTACGG
66 TATAGGGACATTACGG
* * ** * * * *
18358332 TCATTTTAACCAACAGTTGCATCACGGTCATTTTACCCTACAGGGGTATTACTGTCATTTTACCC
1 TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTACAGGGGCATTACGGTCATTTTACCC
*
18358397 TATAGGGGCATTACGG
66 TATAGGGACATTACGG
* *
18358413 TTATTTTACCCTATAGGGGTATTACGGTCATTTTACC
1 TCATTTTACCCTACAGGGGTATTACGGTCATTTTACC
18358450 TATTTTGGGA
Statistics
Matches: 99, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 99 1.00
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (81 bp):
TCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTACAGGGGCATTACGGTCATTTTACCC
TATAGGGACATTACGG
Found at i:18383619 original size:8 final size:8
Alignment explanation
Indices: 18383578--18383619 Score: 52
Period size: 8 Copynumber: 5.4 Consensus size: 8
18383568 ATGGATTGGC
18383578 AAAAGCC-
1 AAAAGCCG
18383585 AAAATGCC-
1 AAAA-GCCG
18383593 AAAAGCCG
1 AAAAGCCG
18383601 AAAAGCCG
1 AAAAGCCG
*
18383609 AAAAGCTG
1 AAAAGCCG
18383617 AAA
1 AAA
18383620 GTTGGGCTAC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
7 7 0.22
8 25 0.78
ACGTcount: A:0.55, C:0.21, G:0.19, T:0.05
Consensus pattern (8 bp):
AAAAGCCG
Found at i:18383760 original size:18 final size:19
Alignment explanation
Indices: 18383726--18383762 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
18383716 AGAATTGGCC
18383726 AAATGGGCCGAGATGGGCT
1 AAATGGGCCGAGATGGGCT
*
18383745 AAATGGGCC-TGATGGGCT
1 AAATGGGCCGAGATGGGCT
18383763 GTTGGGCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.24, C:0.16, G:0.41, T:0.19
Consensus pattern (19 bp):
AAATGGGCCGAGATGGGCT
Found at i:18383942 original size:28 final size:29
Alignment explanation
Indices: 18383873--18383947 Score: 91
Period size: 29 Copynumber: 2.6 Consensus size: 29
18383863 GAATGAAAAT
* *
18383873 TGGGCCTCGTGGGCCATAAGAATATGAAC
1 TGGGCCTAGTGGGCCATAAGAATAAGAAC
**
18383902 TGGGCC-AGATGGGCCATTTGAATAAG-AC
1 TGGGCCTAG-TGGGCCATAAGAATAAGAAC
18383930 TGGGCCTAGTGGGCCATA
1 TGGGCCTAGTGGGCCATA
18383948 TGCATATATG
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
28 17 0.44
29 22 0.56
ACGTcount: A:0.25, C:0.20, G:0.33, T:0.21
Consensus pattern (29 bp):
TGGGCCTAGTGGGCCATAAGAATAAGAAC
Found at i:18394317 original size:16 final size:15
Alignment explanation
Indices: 18394296--18394386 Score: 61
Period size: 17 Copynumber: 6.3 Consensus size: 15
18394286 ATCCTCCTTT
18394296 TTTTTATTTATTCTTA
1 TTTTTATTTATT-TTA
18394312 TTTTTATTTTATTTTA
1 TTTTTA-TTTATTTTA
18394328 -TTTTA--T-TTTTA
1 TTTTTATTTATTTTA
* *
18394339 TTTTTA-GT-TTTTC
1 TTTTTATTTATTTTA
*
18394352 TTTTTATTTTCATTTCA
1 TTTTTA-TTT-ATTTTA
*
18394369 ATTTTA-TTATTTTA
1 TTTTTATTTATTTTA
18394383 TTTT
1 TTTT
18394387 GAAAGACATA
Statistics
Matches: 61, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
11 5 0.08
12 6 0.10
13 11 0.18
14 8 0.13
15 8 0.13
16 9 0.15
17 14 0.23
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.77
Consensus pattern (15 bp):
TTTTTATTTATTTTA
Found at i:18394322 original size:21 final size:21
Alignment explanation
Indices: 18394293--18394386 Score: 79
Period size: 21 Copynumber: 4.4 Consensus size: 21
18394283 TGAATCCTCC
18394293 TTTT-TTTTA-TTTATTCTTAT
1 TTTTATTTTATTTTATT-TTAT
18394313 TTTTATTTTATTTTATTTTAT
1 TTTTATTTTATTTTATTTTAT
** *
18394334 TTTTATTTT-TAGT-TTTTCT
1 TTTTATTTTATTTTATTTTAT
*
18394353 TTTTATTTTCATTTCAATTTTATT
1 TTTTATTTT-ATTT-TATTTTA-T
18394377 ATTTTATTTT
1 -TTTTATTTT
18394387 GAAAGACATA
Statistics
Matches: 59, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
19 14 0.24
20 6 0.10
21 19 0.32
22 6 0.10
23 4 0.07
24 1 0.02
25 9 0.15
ACGTcount: A:0.17, C:0.04, G:0.01, T:0.78
Consensus pattern (21 bp):
TTTTATTTTATTTTATTTTAT
Found at i:18394323 original size:5 final size:5
Alignment explanation
Indices: 18394293--18394386 Score: 65
Period size: 5 Copynumber: 18.8 Consensus size: 5
18394283 TGAATCCTCC
18394293 TTTT- TTTTA -TTTA TTCTTA TTTTTA TTTTA TTTTA TTTTA TTTTTA
1 TTTTA TTTTA TTTTA TT-TTA -TTTTA TTTTA TTTTA TTTTA -TTTTA
* * *
18394339 TTTTTA GTTT- TTCT- TTTTA TTTTCA TTTCAA TTTTA --TTA TTTTA
1 -TTTTA TTTTA TTTTA TTTTA TTTT-A TTT-TA TTTTA TTTTA TTTTA
18394383 TTTT
1 TTTT
18394387 GAAAGACATA
Statistics
Matches: 74, Mismatches: 6, Indels: 19
0.75 0.06 0.19
Matches are distributed among these distances:
3 3 0.04
4 13 0.18
5 31 0.42
6 25 0.34
7 2 0.03
ACGTcount: A:0.17, C:0.04, G:0.01, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:18394325 original size:11 final size:11
Alignment explanation
Indices: 18394302--18394386 Score: 73
Period size: 12 Copynumber: 7.2 Consensus size: 11
18394292 CTTTTTTTTA
18394302 TTTATTCTTATT
1 TTTATT-TTATT
18394314 TTTATTTTA-T
1 TTTATTTTATT
18394324 TTTATTTTATT
1 TTTATTTTATT
18394335 TTTATTTTTAGTT
1 TTTA-TTTTA-TT
*
18394348 TTTCTTTTTATT
1 TTT-ATTTTATT
* *
18394360 TTCATTTCAATTT
1 TTTATTT-TA-TT
18394373 TATTATTTTATT
1 T-TTATTTTATT
18394385 TT
1 TT
18394387 GAAAGACATA
Statistics
Matches: 60, Mismatches: 6, Indels: 15
0.74 0.07 0.19
Matches are distributed among these distances:
10 10 0.17
11 12 0.20
12 19 0.32
13 14 0.23
14 5 0.08
ACGTcount: A:0.18, C:0.05, G:0.01, T:0.76
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:18394349 original size:7 final size:6
Alignment explanation
Indices: 18394302--18394366 Score: 73
Period size: 6 Copynumber: 11.2 Consensus size: 6
18394292 CTTTTTTTTA
*
18394302 TTTATT CTTATT TTTA-T TTTA-T TTTA-T TTTATT TTTATT TTTAGTT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTA-TT
* *
18394348 TTTCTT TTTATT TTCATT T
1 TTTATT TTTATT TTTATT T
18394367 CAATTTTATT
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
5 15 0.29
6 32 0.62
7 5 0.10
ACGTcount: A:0.15, C:0.05, G:0.02, T:0.78
Consensus pattern (6 bp):
TTTATT
Found at i:18397291 original size:13 final size:13
Alignment explanation
Indices: 18397275--18397307 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
18397265 TTTAATTAAA
*
18397275 TTAGTTAATTAGT
1 TTAGATAATTAGT
18397288 TTAGATAATTAGT
1 TTAGATAATTAGT
18397301 TTA-ATAA
1 TTAGATAA
18397308 ACAAATCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:18415805 original size:22 final size:23
Alignment explanation
Indices: 18415757--18415807 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
18415747 GAAAATCATG
*
18415757 TAATTAAGCATAATTTCACATAC
1 TAATTAAGCATAAATTCACATAC
* * *
18415780 TAATTAAGTA-AAATTCACTTAT
1 TAATTAAGCATAAATTCACATAC
18415802 TAATTA
1 TAATTA
18415808 CTCAAGATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 15 0.62
23 9 0.38
ACGTcount: A:0.45, C:0.12, G:0.04, T:0.39
Consensus pattern (23 bp):
TAATTAAGCATAAATTCACATAC
Found at i:18417793 original size:17 final size:17
Alignment explanation
Indices: 18417753--18417795 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
18417743 ACTAAGACAT
*
18417753 AAAAATAAACACCTAAA
1 AAAAATAAACAACTAAA
18417770 AAGAAATAAA-AACTAAA
1 AA-AAATAAACAACTAAA
18417787 GAAAAATAA
1 -AAAAATAA
18417796 TTTCTCCCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 14 0.61
18 9 0.39
ACGTcount: A:0.74, C:0.09, G:0.05, T:0.12
Consensus pattern (17 bp):
AAAAATAAACAACTAAA
Found at i:18418510 original size:34 final size:34
Alignment explanation
Indices: 18418467--18418532 Score: 132
Period size: 34 Copynumber: 1.9 Consensus size: 34
18418457 ATCATAGATC
18418467 TCTTTAAGAATAATCTTCCCAATATTGATGGACT
1 TCTTTAAGAATAATCTTCCCAATATTGATGGACT
18418501 TCTTTAAGAATAATCTTCCCAATATTGATGGA
1 TCTTTAAGAATAATCTTCCCAATATTGATGGA
18418533 GCTTTCTGTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (34 bp):
TCTTTAAGAATAATCTTCCCAATATTGATGGACT
Found at i:18421553 original size:28 final size:28
Alignment explanation
Indices: 18421444--18421552 Score: 164
Period size: 28 Copynumber: 3.9 Consensus size: 28
18421434 AAAACACTAG
* * *
18421444 TAAAGGAAGCATTTGTGGCAATCTCAAT
1 TAAAGGAAGCCTTTGTGGCTATCTCAGT
*
18421472 TAAAGGAAGCCTTTGTGGCGATCTCAGT
1 TAAAGGAAGCCTTTGTGGCTATCTCAGT
* *
18421500 TAAAAGAAGCCTTTGTGGCTATCTCTGT
1 TAAAGGAAGCCTTTGTGGCTATCTCAGT
18421528 TAAAGGAAGCCTTTGTGGCTATCTC
1 TAAAGGAAGCCTTTGTGGCTATCTC
18421553 TAAAAAGGAA
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 74 1.00
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (28 bp):
TAAAGGAAGCCTTTGTGGCTATCTCAGT
Found at i:18423539 original size:29 final size:29
Alignment explanation
Indices: 18423505--18423578 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
18423495 TAATCAACCG
*
18423505 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
18423534 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
18423563 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
18423579 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:18432222 original size:20 final size:20
Alignment explanation
Indices: 18432197--18432263 Score: 53
Period size: 20 Copynumber: 3.1 Consensus size: 20
18432187 GTCACATATA
18432197 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
** * *
18432217 TCATGAGTTCAGATGTCACATATA
1 TCATGAACTCAGA--CCACA-A-C
*
18432241 TCACGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
18432261 TCA
1 TCA
18432264 AGAGTTCATA
Statistics
Matches: 34, Mismatches: 9, Indels: 8
0.67 0.18 0.16
Matches are distributed among these distances:
20 14 0.41
21 1 0.03
22 8 0.24
23 1 0.03
24 10 0.29
ACGTcount: A:0.37, C:0.30, G:0.12, T:0.21
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Found at i:18432235 original size:44 final size:44
Alignment explanation
Indices: 18432186--18432271 Score: 154
Period size: 44 Copynumber: 2.0 Consensus size: 44
18432176 CCAAAACATG
* *
18432186 TGTCACATATATCATGAACTCAGACCACAACTCATGAGTTCAGA
1 TGTCACATATATCACGAACTCAGACCACAACTCAAGAGTTCAGA
18432230 TGTCACATATATCACGAACTCAGACCACAACTCAAGAGTTCA
1 TGTCACATATATCACGAACTCAGACCACAACTCAAGAGTTCA
18432272 TATCACATAG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.37, C:0.27, G:0.13, T:0.23
Consensus pattern (44 bp):
TGTCACATATATCACGAACTCAGACCACAACTCAAGAGTTCAGA
Found at i:18435997 original size:30 final size:30
Alignment explanation
Indices: 18435963--18436028 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 30
18435953 CACACGAGCA
* *
18435963 GACACATGGGTGTGTGTCTCAACTATGTGT
1 GACACATGGGCGTGTATCTCAACTATGTGT
*
18435993 GACACATGGGCGTGTATCTCAACTGTGTGT
1 GACACATGGGCGTGTATCTCAACTATGTGT
18436023 GACACA
1 GACACA
18436029 CTGCCATGCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.29
Consensus pattern (30 bp):
GACACATGGGCGTGTATCTCAACTATGTGT
Found at i:18445355 original size:12 final size:13
Alignment explanation
Indices: 18445343--18445392 Score: 57
Period size: 12 Copynumber: 3.8 Consensus size: 13
18445333 TTAATTTTTT
18445343 AATTATAAATTTA
1 AATTATAAATTTA
18445356 AATT-TAAATTTA
1 AATTATAAATTTA
* * *
18445368 AATTTTACGATTTT
1 AATTATA-AATTTA
18445382 AATTATAAATT
1 AATTATAAATT
18445393 ATGTTATACA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
12 12 0.39
13 9 0.29
14 10 0.32
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (13 bp):
AATTATAAATTTA
Found at i:18445359 original size:6 final size:6
Alignment explanation
Indices: 18445343--18445372 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
18445333 TTAATTTTTT
18445343 AATTATA AATTTA AATTTA AATTTA AATTT
1 AATT-TA AATTTA AATTTA AATTTA AATTT
18445373 TACGATTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 19 0.83
7 4 0.17
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
AATTTA
Found at i:18465439 original size:177 final size:180
Alignment explanation
Indices: 18465071--18465861 Score: 794
Period size: 177 Copynumber: 4.5 Consensus size: 180
18465061 GCGACATTGG
* * * *
18465071 TGAAGA-TGAAAGATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATCG-AAGATGGCTAATCTTA
1 TGAAGATTG-AAGATCTTATCTCCCT-AAGTAGTAGTGGAGCAGATCGAAAGATGGCGAATCTTA
* * * * * *
18465134 TCTCCATCTATCAGCAATGAAGCAGATTTGAGCCACCAGCCTTATCTCTCTGAGGTTGC--AAGA
64 TCTCCATGTATCGGCAATGAAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAAGTTGCAGAAGA
* * ** * *
18465197 GAGCGGGTTGAAGA-ATGAGTCTTATCTTTCTAAGACAGCAAGAAAGTAGAC
129 GAGCGGGTTGAAGATATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGAC
* *
18465248 TGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAGA-GGCGAGTCTTATC
1 TGAAGATTGAAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAAGATGGCGAATCTTATC
* * * * *
18465312 TCTATGTATCGGTAATGAAGCAGA-TTTATGCCTCGAGCCTTATCTCCCTGAAGTTGTAG-AG-G
66 TCCATGTATCGGCAATGAAGCAGATTTTA-GCCACTAGCCTTATCTCCCTGAAGTTGCAGAAGAG
*
18465374 AGCGGGTTCAAGATATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGAC
130 AGCGGGTTGAAGATATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGAC
*
18465425 TGAAGATTGAAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGGATGGCGAATCTTATC
1 TGAAGATTGAAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAAGATGGCGAATCTTATC
* * * * *
18465490 TCCATGTATCGGCACT-AGAGCAGATTTTAGCCACTAACCTTACCTCCCTGAAGGTGCAG--TAG
66 TCCATGTATCGGCAATGA-AGCAGATTTTAGCCACTAGCCTTATCTCCCTGAAGTTGCAGAAGAG
* * * ** * *
18465552 AGCAGGCTT-TATATACAAGTCTTATCCTCCTGAGGTAGCAAGGAAACAGAC
130 AGC-GGGTTGAAGATATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGAC
* * * * *
18465603 TGAGGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC-AAATATGGTGAATCTTATC
1 TGAAGATTGAAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAAGATGGCGAATCTTATC
* * * * *
18465667 TCCATGTATCGACAATGGAGCAGATTTTCGCCACTAGCCTTATCTCTCT-AAG--GTAGCAAGAG
66 TCCATGTATCGGCAATGAAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAAGTTGCAG-AAGAG
* ** * *
18465729 AACATGTTGAGGATATTG-GTCTTATCTTCCTGATGTAGCAAGGAAGCAGAC
130 AGCGGGTTGAAGATA-TGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGAC
* * * * * *** *
18465780 TAAAGATTGAGGATCTTGTTTCCCTTAAGTAGCT-GTGGAGCAGGTC-AAAGACAACAAATCTTA
1 TGAAGATTGAAGATCTTATCTCCC-TAAGTAG-TAGTGGAGCAGATCGAAAGATGGCGAATCTTA
* *
18465843 TCTCTATGTATCGACAATG
64 TCTCCATGTATCGGCAATG
18465862 GAATAGATTT
Statistics
Matches: 510, Mismatches: 85, Indels: 37
0.81 0.13 0.06
Matches are distributed among these distances:
174 3 0.01
175 3 0.01
176 89 0.17
177 222 0.44
178 184 0.36
179 9 0.02
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (180 bp):
TGAAGATTGAAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAAGATGGCGAATCTTATC
TCCATGTATCGGCAATGAAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAAGTTGCAGAAGAGA
GCGGGTTGAAGATATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGAC
Found at i:18465464 original size:88 final size:85
Alignment explanation
Indices: 18465197--18465464 Score: 202
Period size: 88 Copynumber: 3.0 Consensus size: 85
18465187 GGTTGCAAGA
* ** * *
18465197 GAGCGGGTTGAAGAATGAGTCTTATCTTTCTAAGACAGCAAGAAAGTAGACTGAAGATTGAAGAT
1 GAGCGGGTTCAAGAATGAGTCTTATC-TTCT-AGGTAGCAAGGAAGCAGACTGAAGATTGAAGAT
*
18465262 CTTATCTCCCTAAGCAGTAGTG
64 CTTATCTCCCTAAGTAGTAGTG
* * ** * * * * * * * *
18465284 GAGC-AGATCGAAAGAGGCGAGTCTTATC-TCTATGTATCGGTAATGAAGCAGATTTATGCCTCG
1 GAGCGGGTTC--AAGA-ATGAGTCTTATCTTCTAGGTA---GCAAGGAAGCAGACTGAAG-ATTG
* * *
18465347 -AG-CCTTATCTCCCTGAAGTTGTAGAG
59 AAGATCTTATCTCCCT-AAGTAGTAGTG
18465373 GAGCGGGTTCAAGATATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
1 GAGCGGGTTCAAGA-ATGAGTCTTATCTT-CT-AGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
18465438 TCTTATCTCCCTAAGTAGTAGTG
63 TCTTATCTCCCTAAGTAGTAGTG
18465461 GAGC
1 GAGC
18465465 AGATCGAAGG
Statistics
Matches: 130, Mismatches: 37, Indels: 27
0.67 0.19 0.14
Matches are distributed among these distances:
86 4 0.03
87 9 0.07
88 58 0.45
89 48 0.37
90 7 0.05
91 4 0.03
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (85 bp):
GAGCGGGTTCAAGAATGAGTCTTATCTTCTAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCT
TATCTCCCTAAGTAGTAGTG
Found at i:18465753 original size:355 final size:351
Alignment explanation
Indices: 18465071--18465822 Score: 853
Period size: 355 Copynumber: 2.1 Consensus size: 351
18465061 GCGACATTGG
* * * *
18465071 TGAAGA-TGAAAGATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATCGAAGATGGCTAATCTTAT
1 TGAAGATTG-AAGATCTTATCTCCCT-AAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTAT
* * *
18465135 CTCCATCTATCAGCAATGAAGCAGATTTGAGCCACCAGCCTTATCTCTCTGAGGTTGCAAGAGAG
64 CTCCATCTATCAGCAATGAAGCAGATTTGAGCCACCAACCTTACCTCCCTGAGGTTGCAAGAGAG
* * * *
18465200 CGGGTTGAAGAATGAGTCTTATCTTTCTAAGACAGCAAGAAAGTAGACTGAAGATTGAAGATCTT
129 CGGCTTGAAGAA-GAGTCTTATCCTCCTAAGACAGCAAGAAAGCAGACTGAAGATTGAAGATCTT
* * **
18465265 ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAGAGGCGAGTCTTATCTCTATGTATCGGTAATGA
193 ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAGAGGCGAATCTTATCTCCATGTATCGACAATGA
* * *
18465330 AGCAGATTTATGCCTCGAGCCTTATCTCCCTGAAGTTGTAGAGGAGCGGGTTCAAGATATGAGTC
258 AGCAGATTTATGCCACGAGCCTTATCTCCCTGAAG-TGTAGAGGAACAGGTTCAAGATATGAGTC
18465395 TTATCTTCCTGAGGTAGCAAGGAAGCAGAC
322 TTATCTTCCTGAGGTAGCAAGGAAGCAGAC
18465425 TGAAGATTGAAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGGATGGCGAATCTTATC
1 TGAAGATTGAAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAA-GATGGCGAATCTTATC
* * * * *
18465490 TCCATGTATCGGCACT-AGAGCAGATTTTAGCCACTAACCTTACCTCCCTGAAGG-TGC-AGTAG
65 TCCATCTATCAGCAATGA-AGCAGATTTGAGCCACCAACCTTACCTCCCTG-AGGTTGCAAG-AG
* * * ** *
18465552 AGCAGGCTTTATATACA-AGTCTTATCCTCCTGAGGTAGCAAGGAAA-CAGACTGAGGATTGAAG
127 AGC-GGCTTGA-AGA-AGAGTCTTATCCTCCTAAGACAGCAA-GAAAGCAGACTGAAGATTGAAG
* * *
18465615 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC-AAATATGGTGAATCTTATCTCCATGTATCGA
188 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAGA-GGCGAATCTTATCTCCATGTATCGA
* * * * * *
18465679 CAATGGAGCAGATTT-TCGCCACTAGCCTTATCTCTCT-AAG-GTAGCAAGAGAACATGTTGAGG
252 CAATGAAGCAGATTTAT-GCCACGAGCCTTATCTCCCTGAAGTGTAG--AG-GAACAGGTTCAAG
*
18465741 ATATTG-GTCTTATCTTCCTGATGTAGCAAGGAAGCAGAC
313 ATA-TGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGAC
* * * *
18465780 TAAAGATTGAGGATCTTGTTTCCCTTAAGTAGCT-GTGGAGCAG
1 TGAAGATTGAAGATCTTATCTCCC-TAAGTAG-TAGTGGAGCAG
18465823 GTCAAAGACA
Statistics
Matches: 338, Mismatches: 43, Indels: 32
0.82 0.10 0.08
Matches are distributed among these distances:
352 4 0.01
353 23 0.07
354 95 0.28
355 190 0.56
356 24 0.07
357 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (351 bp):
TGAAGATTGAAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCT
CCATCTATCAGCAATGAAGCAGATTTGAGCCACCAACCTTACCTCCCTGAGGTTGCAAGAGAGCG
GCTTGAAGAAGAGTCTTATCCTCCTAAGACAGCAAGAAAGCAGACTGAAGATTGAAGATCTTATC
TCCCTAAGCAGTAGTGGAGCAGATCGAAAGAGGCGAATCTTATCTCCATGTATCGACAATGAAGC
AGATTTATGCCACGAGCCTTATCTCCCTGAAGTGTAGAGGAACAGGTTCAAGATATGAGTCTTAT
CTTCCTGAGGTAGCAAGGAAGCAGAC
Found at i:18465897 original size:355 final size:354
Alignment explanation
Indices: 18465244--18465897 Score: 791
Period size: 355 Copynumber: 1.8 Consensus size: 354
18465234 GCAAGAAAGT
*
18465244 AGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAGAGGCGAGTCTT
1 AGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAGAGGCGAATCTT
* ** *
18465309 ATCTCTATGTATCGGTAATGAAGCAGATTTATGCCTCGAGCCTTATCTCCCTGAAGTTGTAGAGG
66 ATCTCCATGTATCGACAATGAAGCAGATTTATGCCACGAGCCTTATCTCCCTGAAG-TGTAGAGG
* * *
18465374 AGCGGGTTCAAGATATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGAT
130 AACAGGTTCAAGATATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGAAGAT
* *** * *
18465439 CTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGGATGGCGAATCTTATCTCCATGTATCGGCA
195 CTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAAGACAACAAATCTTATCTCCATGTATCGACA
* * * * * *
18465504 CTAGAGCAGATTTTAGCCACTAACCTTACCTCCCTGAAGGTGCAGTAGAGCAGGCTTTATATACA
260 ATAGAACAGATTTAAGCCACCAACCTTACATACCTGAAGGTGCAGTAGAGCAGGCTTTATATACA
18465569 AGTCTTATCCTCCTGAGGTAGCAAGGAAAC
325 AGTCTTATCCTCCTGAGGTAGCAAGGAAAC
* * * *
18465599 AGACTGAGGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC-AAATATGGTGAATCT
1 AGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAGA-GGCGAATCT
* * *
18465663 TATCTCCATGTATCGACAATGGAGCAGATTT-TCGCCACTAGCCTTATCTCTCT-AAG-GTAGCA
65 TATCTCCATGTATCGACAATGAAGCAGATTTAT-GCCACGAGCCTTATCTCCCTGAAGTGTAG--
* * * *
18465725 AGAGAACATGTTGAGGATATTG-GTCTTATCTTCCTGATGTAGCAAGGAAGCAGACTAAAGATTG
127 AG-GAACAGGTTCAAGATA-TGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTG
* * * * *
18465789 AGGATCTTGTTTCCCTTAAGTAGCT-GTGGAGCAGGTC-AAAGACAACAAATCTTATCTCTATGT
190 AAGATCTTATCTCCC-TAAGTAG-TAGTGGAGCAGATCGAAAGACAACAAATCTTATCTCCATGT
* * ** * **
18465852 ATCGACAATGGAATAGATTTAAGTTACCAGCCTTGTATACCTGAAG
253 ATCGACAATAGAACAGATTTAAGCCACCAACCTTACATACCTGAAG
18465898 TTGTAGTGGA
Statistics
Matches: 248, Mismatches: 43, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
352 4 0.02
354 10 0.04
355 213 0.86
356 20 0.08
357 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (354 bp):
AGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAGAGGCGAATCTT
ATCTCCATGTATCGACAATGAAGCAGATTTATGCCACGAGCCTTATCTCCCTGAAGTGTAGAGGA
ACAGGTTCAAGATATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGAAGATC
TTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAAGACAACAAATCTTATCTCCATGTATCGACAA
TAGAACAGATTTAAGCCACCAACCTTACATACCTGAAGGTGCAGTAGAGCAGGCTTTATATACAA
GTCTTATCCTCCTGAGGTAGCAAGGAAAC
Found at i:18466229 original size:16 final size:17
Alignment explanation
Indices: 18466204--18466237 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
18466194 AAACCAAAAT
18466204 AAAACAAATA-AATAAA
1 AAAACAAATACAATAAA
*
18466220 AAAACCAATACAATAAA
1 AAAACAAATACAATAAA
18466237 A
1 A
18466238 GTCCATCGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (17 bp):
AAAACAAATACAATAAA
Found at i:18470364 original size:26 final size:26
Alignment explanation
Indices: 18470335--18470387 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
18470325 TCCAACATGC
18470335 ATTTAAGTCAATTTA-ACCCTAGGGGT
1 ATTTAAGT-AATTTATACCCTAGGGGT
** *
18470361 ATTTCGGTAATTTATCCCCTAGGGGT
1 ATTTAAGTAATTTATACCCTAGGGGT
18470387 A
1 A
18470388 AAACTCTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (26 bp):
ATTTAAGTAATTTATACCCTAGGGGT
Found at i:18471775 original size:26 final size:26
Alignment explanation
Indices: 18471736--18471817 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
18471726 TAAAATTCCA
18471736 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
18471762 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
18471788 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
18471814 ATCA
1 ATCA
18471818 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:18483561 original size:42 final size:44
Alignment explanation
Indices: 18483502--18483615 Score: 162
Period size: 42 Copynumber: 2.6 Consensus size: 44
18483492 TACTCGTACA
18483502 ATGCCAATGTCCCAAACATGGTCTTACATG-AAAT--CAAATACG
1 ATGCCAATGTCCCAAACATGGTCTTACATGTAAATCACAAAT-CG
* *
18483544 ATGCCGATGTCCCAAACATGGTCTTACATGTAAATCACAAATTG
1 ATGCCAATGTCCCAAACATGGTCTTACATGTAAATCACAAATCG
* *
18483588 ATGCCAACGTCCCAGACATGGTCTTACA
1 ATGCCAATGTCCCAAACATGGTCTTACA
18483616 CAAAAACACA
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
42 29 0.45
43 4 0.06
44 26 0.41
45 5 0.08
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (44 bp):
ATGCCAATGTCCCAAACATGGTCTTACATGTAAATCACAAATCG
Found at i:18486298 original size:46 final size:44
Alignment explanation
Indices: 18486158--18486298 Score: 126
Period size: 46 Copynumber: 3.0 Consensus size: 44
18486148 GCCCATAAGC
* *
18486158 GAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTA-CATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AGT
* * *
18486205 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTAGT
18486251 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTAGT
18486297 GA
1 GA
18486299 CATGTCACTT
Statistics
Matches: 78, Mismatches: 9, Indels: 15
0.76 0.09 0.15
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 33 0.42
47 30 0.38
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAGT
Found at i:18488583 original size:13 final size:13
Alignment explanation
Indices: 18488561--18488593 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
18488551 AAGGATTTGT
18488561 TTAT-TAAACTAA
1 TTATCTAAACTAA
18488573 TTATCTAAACTAA
1 TTATCTAAACTAA
*
18488586 TTAACTAA
1 TTATCTAA
18488594 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:18491480 original size:6 final size:5
Alignment explanation
Indices: 18491451--18491549 Score: 64
Period size: 5 Copynumber: 19.0 Consensus size: 5
18491441 TATGTCTTTC
* *
18491451 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAT AAAAAT CAAAAGA AAAAT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT -AAAAT -AAAA-T AAAAT
18491499 AAAA- ATAAAT AAAAT AAAAT AAAAT AAAAAAT AAGAAT -AAAT AAAA-
1 AAAAT A-AAAT AAAAT AAAAT AAAAT --AAAAT AA-AAT AAAAT AAAAT
18491545 AAAAT
1 AAAAT
18491550 GAGGATTCAA
Statistics
Matches: 76, Mismatches: 6, Indels: 24
0.72 0.06 0.23
Matches are distributed among these distances:
3 3 0.04
4 8 0.11
5 35 0.46
6 25 0.33
7 5 0.07
ACGTcount: A:0.77, C:0.01, G:0.04, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:18491529 original size:32 final size:33
Alignment explanation
Indices: 18491449--18491549 Score: 118
Period size: 32 Copynumber: 3.0 Consensus size: 33
18491439 GATATGTCTT
*
18491449 TCAAAATAAAATAATAAAATTGAAATGAAAATAAAAA
1 TCAAAATAAAA-AATAAAAAT-AAAT-AAAAT-AAAA
*
18491486 TCAAAA-GAAAAATAAAAATAAATAAAATAAAA
1 TCAAAATAAAAAATAAAAATAAATAAAATAAAA
*
18491518 T-AAAATAAAAAATAAGAATAAATAAAA-AAAA
1 TCAAAATAAAAAATAAAAATAAATAAAATAAAA
18491549 T
1 T
18491550 GAGGATTCAA
Statistics
Matches: 59, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
31 9 0.15
32 24 0.41
33 5 0.08
34 4 0.07
35 8 0.14
36 3 0.05
37 6 0.10
ACGTcount: A:0.75, C:0.02, G:0.04, T:0.19
Consensus pattern (33 bp):
TCAAAATAAAAAATAAAAATAAATAAAATAAAA
Found at i:18491539 original size:13 final size:12
Alignment explanation
Indices: 18491451--18491549 Score: 60
Period size: 12 Copynumber: 7.8 Consensus size: 12
18491441 TATGTCTTTC
18491451 AAAATAAAATAA
1 AAAATAAAATAA
* *
18491463 TAAAATTGAAAT-G
1 -AAAA-TAAAATAA
18491476 AAAATAAAAATCAA
1 AAAAT-AAAAT-AA
*
18491490 AAGA-AAAAT-A
1 AAAATAAAATAA
*
18491500 AAAATAAATAAAA
1 AAAATAAA-ATAA
18491513 TAAAATAAAATAA
1 -AAAATAAAATAA
18491526 AAAATAAGAATAA
1 AAAATAA-AATAA
*
18491539 ATAAAAAAAAT
1 A-AAATAAAAT
18491550 GAGGATTCAA
Statistics
Matches: 67, Mismatches: 9, Indels: 20
0.70 0.09 0.21
Matches are distributed among these distances:
10 4 0.06
11 4 0.06
12 21 0.31
13 17 0.25
14 21 0.31
ACGTcount: A:0.77, C:0.01, G:0.04, T:0.18
Consensus pattern (12 bp):
AAAATAAAATAA
Found at i:18496957 original size:13 final size:13
Alignment explanation
Indices: 18496935--18496967 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
18496925 AAGGATTTGT
18496935 TTAT-TAAACTAA
1 TTATCTAAACTAA
18496947 TTATCTAAACTAA
1 TTATCTAAACTAA
*
18496960 TTAACTAA
1 TTATCTAA
18496968 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:18502297 original size:3 final size:3
Alignment explanation
Indices: 18502249--18502284 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
18502239 AATCAATCTC
18502249 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
18502285 GTCTCAATTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:18502967 original size:43 final size:43
Alignment explanation
Indices: 18502920--18503092 Score: 168
Period size: 43 Copynumber: 4.0 Consensus size: 43
18502910 ACGCCACTAT
* *
18502920 AGAACATGACTTTTAGCGGCGCTTTCCCCACAAACACCGCTAA
1 AGAACATGACCTTTAGCGGCACTTTCCCCACAAACACCGCTAA
* ** * *
18502963 AGAACATGACCTTTAGTGGCACTTTCCCCACAGGCGCTGCTAA
1 AGAACATGACCTTTAGCGGCACTTTCCCCACAAACACCGCTAA
* ** * *
18503006 AGAACATGACCTTTAACGGTGCTTTCTCCACAAGCACCGCTAA
1 AGAACATGACCTTTAGCGGCACTTTCCCCACAAACACCGCTAA
* * * * * * *
18503049 AGAACCTAACTTTTAG-GGCACTTTTCCCAAAAACGCCACTAA
1 AGAACATGACCTTTAGCGGCACTTTCCCCACAAACACCGCTAA
18503091 AG
1 AG
18503093 GTCATGAAAA
Statistics
Matches: 103, Mismatches: 27, Indels: 1
0.79 0.21 0.01
Matches are distributed among these distances:
42 20 0.19
43 83 0.81
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.23
Consensus pattern (43 bp):
AGAACATGACCTTTAGCGGCACTTTCCCCACAAACACCGCTAA
Found at i:18503742 original size:23 final size:23
Alignment explanation
Indices: 18503715--18503791 Score: 59
Period size: 23 Copynumber: 3.3 Consensus size: 23
18503705 ATAAACTAAA
18503715 TTTCAGCAACTAAACAATTCAAT
1 TTTCAGCAACTAAACAATTCAAT
*
18503738 TTTCAG-TACTTAAA-AACTTCAAT
1 TTTCAGCAAC-TAAACAA-TTCAAT
* * ** *
18503761 TTACAACATTTAAACACTTCAAT
1 TTTCAGCAACTAAACAATTCAAT
*
18503784 TTGCAGCA
1 TTTCAGCA
18503792 CTTTAACACT
Statistics
Matches: 41, Mismatches: 9, Indels: 8
0.71 0.16 0.14
Matches are distributed among these distances:
22 4 0.10
23 36 0.88
24 1 0.02
ACGTcount: A:0.40, C:0.21, G:0.05, T:0.34
Consensus pattern (23 bp):
TTTCAGCAACTAAACAATTCAAT
Found at i:18503775 original size:46 final size:46
Alignment explanation
Indices: 18503725--18503820 Score: 120
Period size: 46 Copynumber: 2.1 Consensus size: 46
18503715 TTTCAGCAAC
* * *
18503725 TAAACAATTCAATTTTCAGTACTTAAAAACTTCAATTTACAACATT
1 TAAACAATTCAATTTGCAGCACTTAAAAACTTCAATTTACAACATG
* * * * *
18503771 TAAACACTTCAATTTGCAGCACTTTAACACTTTAATTTGCAACATG
1 TAAACAATTCAATTTGCAGCACTTAAAAACTTCAATTTACAACATG
18503817 TAAA
1 TAAA
18503821 AATAAAATAA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.41, C:0.19, G:0.05, T:0.35
Consensus pattern (46 bp):
TAAACAATTCAATTTGCAGCACTTAAAAACTTCAATTTACAACATG
Found at i:18503799 original size:23 final size:23
Alignment explanation
Indices: 18503727--18503811 Score: 82
Period size: 23 Copynumber: 3.7 Consensus size: 23
18503717 TCAGCAACTA
* * * *
18503727 AACAATTCAATTTTCAGTACTTA
1 AACACTTCAATTTGCAGCACTTT
* * *
18503750 AAAACTTCAATTTACAACA-TTT
1 AACACTTCAATTTGCAGCACTTT
18503772 AAACACTTCAATTTGCAGCACTTT
1 -AACACTTCAATTTGCAGCACTTT
*
18503796 AACACTTTAATTTGCA
1 AACACTTCAATTTGCA
18503812 ACATGTAAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
22 2 0.04
23 45 0.90
24 3 0.06
ACGTcount: A:0.39, C:0.20, G:0.05, T:0.36
Consensus pattern (23 bp):
AACACTTCAATTTGCAGCACTTT
Found at i:18509010 original size:182 final size:182
Alignment explanation
Indices: 18508678--18509148 Score: 721
Period size: 182 Copynumber: 2.6 Consensus size: 182
18508668 TCCAGCAACT
* * * *
18508678 AAACATTTCAATTTGCAG-TACTTAAACACTTCAATTTACAACATTTAAACACTTCAATTTACAA
1 AAACATCTCAATTTCCAGCAAC-TAAACACTTCAATTTACAATATTTAAACACTTCAATTTACAA
* * * * * *
18508742 CATTCAAACACTTCAATTTGCAGCATTGTAACACTTCAATTTATAGCATTTAAATACTTCAATTT
65 CATTTAAGCACTTCAATTTACAGCATT-TAACACTTCAATTTACAGCATTTAAACACTGCAATTT
*
18508807 GTAGCACTTTAACATCTCAATTAACAACATTTATACAGCTCAATTACAGCGATA
129 GTAGCACTTTAACATCTCAATTAACAACATTTATACACCTCAATTACAGCGATA
* *
18508861 AAACATCTCAATTTCCAGCAACTAAACACTTCAATTTACAATATTTAAGCACTTCAATTTACAGC
1 AAACATCTCAATTTCCAGCAACTAAACACTTCAATTTACAATATTTAAACACTTCAATTTACAAC
*
18508926 ATTTAAGCACTTCAATTTATAGCATTTAACACTTCAATTTACAGCATTTAAACACTGCAATTTGC
66 ATTTAAGCACTTCAATTTACAGCATTTAACACTTCAATTTACAGCATTTAAACACTGCAATTTG-
18508991 T-GCACTTTAACATCTCAATTAACAACATTTATACACCTCAATTACAGCGATA
130 TAGCACTTTAACATCTCAATTAACAACATTTATACACCTCAATTACAGCGATA
* * * * *
18509043 AAACATCTCAATTTCCAGCAACTAAACACTTCTATTTGCAGTACTTAAAAACTTCAATTTACAAC
1 AAACATCTCAATTTCCAGCAACTAAACACTTCAATTTACAATATTTAAACACTTCAATTTACAAC
18509108 ATTTAAGCACTTCAATTTACAGCATTTAAACACTTCAATTT
66 ATTTAAGCACTTCAATTTACAGCATTT-AACACTTCAATTT
18509149 TCATCACTTT
Statistics
Matches: 263, Mismatches: 22, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
182 169 0.64
183 92 0.35
184 2 0.01
ACGTcount: A:0.38, C:0.22, G:0.06, T:0.34
Consensus pattern (182 bp):
AAACATCTCAATTTCCAGCAACTAAACACTTCAATTTACAATATTTAAACACTTCAATTTACAAC
ATTTAAGCACTTCAATTTACAGCATTTAACACTTCAATTTACAGCATTTAAACACTGCAATTTGT
AGCACTTTAACATCTCAATTAACAACATTTATACACCTCAATTACAGCGATA
Found at i:18509033 original size:160 final size:158
Alignment explanation
Indices: 18508731--18509299 Score: 625
Period size: 160 Copynumber: 3.6 Consensus size: 158
18508721 TTTAAACACT
*
18508731 TCAATTTACAAC-ATTCAAACACTTCAATTTGCAGCATTGT-AACACTTCAATTTATAGCATTTA
1 TCAATTTACAACAACT-AAACACTTCAATTTGCAGCATT-TAAACACTTCAATTTATAGCATTTA
* ** * * * *
18508794 AATACTTCAATTTGTAGCACTTT-AACATCTCAATTAAC-AACATTTATACAGCTCAATT-ACAG
64 AACACTTCAATTTACAGCA-TTTAAACA-CTCAATTTACTCAC-TTTA-ACATCTCAATTAACAA
* * * *
18508856 CGA-TAAAACATCTCAATTTCCAGCAACT-AAACA-C
125 C-ATTTATACACCTCAA-TTACAGCAA-TAAAACATC
* ** * * *
18508890 TTCAATTTACAATATTTAAGCACTTCAATTTACAGCATTTAAGCACTTCAATTTATAGCATTT-A
1 -TCAATTTACAACAACTAAACACTTCAATTTGCAGCATTTAAACACTTCAATTTATAGCATTTAA
*
18508954 ACACTTCAATTTACAGCATTTAAACACTGCAATTTGCTGCACTTTAACATCTCAATTAACAACAT
65 ACACTTCAATTTACAGCATTTAAACACT-CAATTTACT-CACTTTAACATCTCAATTAACAACAT
*
18509019 TTATACACCTCAATTACAGCGATAAAACATC
128 TTATACACCTCAATTACAGCAATAAAACATC
* * * * * * * * *
18509050 TCAATTTCCAGCAACTAAACACTTCTATTTGCAGTACTTAAAAACTTCAATTTACAACATTTAAG
1 TCAATTTACAACAACTAAACACTTCAATTTGCAGCATTTAAACACTTCAATTTATAGCATTTAAA
* *
18509115 CACTTCAATTTACAGCATTTAAACACTTCAATTTTCATCACTTTAACATCTCAATTAACAATATT
66 CACTTCAATTTACAGCATTTAAACAC-TCAATTTAC-TCACTTTAACATCTCAATTAACAACATT
*
18509180 TATACACCTCAATTACATCAATAAAACATC
129 TATACACCTCAATTACAGCAATAAAACATC
* * **
18509210 TCAATTTCCAGCAACTAAACACTTCAATTTGCAATATTTAAACACTTCAATTTATAGCATTTAAA
1 TCAATTTACAACAACTAAACACTTCAATTTGCAGCATTTAAACACTTCAATTTATAGCATTTAAA
18509275 CACTTCAATTTACAGCATTTAAACA
66 CACTTCAATTTACAGCATTTAAACA
18509300 GCAGCAACCA
Statistics
Matches: 352, Mismatches: 44, Indels: 26
0.83 0.10 0.06
Matches are distributed among these distances:
158 6 0.02
159 98 0.28
160 242 0.69
161 6 0.02
ACGTcount: A:0.39, C:0.22, G:0.05, T:0.34
Consensus pattern (158 bp):
TCAATTTACAACAACTAAACACTTCAATTTGCAGCATTTAAACACTTCAATTTATAGCATTTAAA
CACTTCAATTTACAGCATTTAAACACTCAATTTACTCACTTTAACATCTCAATTAACAACATTTA
TACACCTCAATTACAGCAATAAAACATC
Found at i:18509146 original size:137 final size:134
Alignment explanation
Indices: 18508578--18509296 Score: 412
Period size: 137 Copynumber: 5.3 Consensus size: 134
18508568 TAATTCTAAC
* * * * *
18508578 ACAGCACTTT-AACACTTCAATTTACAACACTTTAACATCTCAATTAACAACATTTATACTCCTT
1 ACAGCA-TTTAAACACTTCAATTTACAACA-TTTAACACCTCAATTAAC-A-ATATAAACACCTC
* * * * * ** *
18508642 AATTACAGCGATAAAACATCTTAATTTCCAGCAACTAAACATTTCAATTTGCAGTACTTAAACAC
62 AATTACAGCAATAAAACATCTCAATTTCCAGCAACTAAAAACTTCAATTTACAACATTTAAACAC
18508707 TTCAATTT
127 TTCAATTT
* * * ** * *
18508715 ACAACATTTAAACACTTCAATTTACAACATTCAAACACTTCAATTTGCAGCAT-TGTAACACTTC
1 ACAGCATTTAAACACTTCAATTTACAACATT-TAACACCTCAATTAACA--ATAT-AAACACCTC
* * ** ** *
18508779 AATTTATAGCATTTAAATAC-T-TCAATTTGTAGC-ACT-TTAACATCTCAATTAACAACATTTA
62 AA-TTACAGCA-ATAAA-ACATCTCAATTTCCAGCAACTAAAAAC-T-TCAATTTACAACATTTA
*
18508840 TACAGC-TCAA-TT
122 AACA-CTTCAATTT
* * * * * * * * *
18508852 ACAGCGA-TAAAACA-TCTCAATTTCCAGCAACTAAACACTTCAATTTACAATATTTAAGCACTT
1 ACAGC-ATTTAAACACT-TCAATTTACAAC-ATTTAACACCTCAATTAACAATA--TAAACACCT
* * * ** * * * *
18508915 CAATTTACAGCATTTAAGCA-CTTCAATTTATAGC-ATTTAACACTTCAATTTACAGCATTTAAA
61 CAA-TTACAGCAATAAAACATC-TCAATTTCCAGCAACTAAAAACTTCAATTTACAACATTTAAA
*
18508978 CACTGCAATTT
124 CACTTCAATTT
* * * * *
18508989 GCTGCACTTT-AACA-TCTCAATTAACAACATTTATACACCTCAATTACAGCGATA-AAACATCT
1 ACAGCA-TTTAAACACT-TCAATTTACAACATTTA-ACACCTCAATTA-A-CAATATAAACACCT
* * * *
18509051 CAATTTCCAGCAACT-AAACA-CTTCTATTTGCAG-TACTTAAAAACTTCAATTTACAACATTTA
61 CAA-TTACAGCAA-TAAAACATC-TCAATTTCCAGCAAC-TAAAAACTTCAATTTACAACATTTA
*
18509113 AGCACTTCAATTT
122 AACACTTCAATTT
* * * *
18509126 ACAGCATTTAAACACTTCAATTTTCATCACTTTAACATCTCAATTAACAATATTTATACACCTCA
1 ACAGCATTTAAACACTTCAATTTACAACA-TTTAACACCTCAATTAACAATA--TAAACACCTCA
* * * *
18509191 ATTACATCAATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCAATATTTAAACACT
63 ATTACAGCAATAAAACATCTCAATTTCCAGCAACTAAAAACTTCAATTTACAACATTTAAACACT
18509256 TCAATTT
128 TCAATTT
* *
18509263 ATAGCATTTAAACACTTCAATTTACAGCATTTAA
1 ACAGCATTTAAACACTTCAATTTACAACATTTAA
18509297 ACAGCAGCAA
Statistics
Matches: 449, Mismatches: 94, Indels: 79
0.72 0.15 0.13
Matches are distributed among these distances:
135 8 0.02
136 79 0.18
137 291 0.65
138 59 0.13
139 10 0.02
140 2 0.00
ACGTcount: A:0.39, C:0.23, G:0.05, T:0.34
Consensus pattern (134 bp):
ACAGCATTTAAACACTTCAATTTACAACATTTAACACCTCAATTAACAATATAAACACCTCAATT
ACAGCAATAAAACATCTCAATTTCCAGCAACTAAAAACTTCAATTTACAACATTTAAACACTTCA
ATTT
Found at i:18509297 original size:23 final size:23
Alignment explanation
Indices: 18508578--18509299 Score: 493
Period size: 23 Copynumber: 31.6 Consensus size: 23
18508568 TAATTCTAAC
18508578 ACAGCACTTT-AACACTTCAATTT
1 ACAGCA-TTTAAACACTTCAATTT
* *
18508601 ACAACACTTT-AACA-TCTCAATTA
1 ACAGCA-TTTAAACACT-TCAATTT
* * *
18508624 ACAACATTTATACTCCTT-AA-TT
1 ACAGCATTTAAAC-ACTTCAATTT
*
18508646 ACAGCGA-TAAAACATCTT-AATTT
1 ACAGC-ATTTAAACA-CTTCAATTT
* ** *
18508669 CCAGCAACTAAACATTTCAATTT
1 ACAGCATTTAAACACTTCAATTT
* * *
18508692 GCAGTACTTAAACACTTCAATTT
1 ACAGCATTTAAACACTTCAATTT
*
18508715 ACAACATTTAAACACTTCAATTT
1 ACAGCATTTAAACACTTCAATTT
* *
18508738 ACAACATTCAAACACTTCAATTT
1 ACAGCATTTAAACACTTCAATTT
*
18508761 GCAGCATTGT-AACACTTCAATTT
1 ACAGCATT-TAAACACTTCAATTT
* *
18508784 ATAGCATTTAAATACTTCAATTT
1 ACAGCATTTAAACACTTCAATTT
** *
18508807 GTAGCACTTT-AACA-TCTCAATTA
1 ACAGCA-TTTAAACACT-TCAATTT
* *
18508830 ACAACATTTATACAGC-TCAA-TT
1 ACAGCATTTAAACA-CTTCAATTT
*
18508852 ACAGCGA-TAAAACA-TCTCAATTT
1 ACAGC-ATTTAAACACT-TCAATTT
* **
18508875 CCAGCAACTAAACACTTCAATTT
1 ACAGCATTTAAACACTTCAATTT
** *
18508898 ACAATATTTAAGCACTTCAATTT
1 ACAGCATTTAAACACTTCAATTT
*
18508921 ACAGCATTTAAGCACTTCAATTT
1 ACAGCATTTAAACACTTCAATTT
*
18508944 ATAGCATTT-AACACTTCAATTT
1 ACAGCATTTAAACACTTCAATTT
*
18508966 ACAGCATTTAAACACTGCAATTT
1 ACAGCATTTAAACACTTCAATTT
* * *
18508989 GCTGCACTTT-AACA-TCTCAATTA
1 ACAGCA-TTTAAACACT-TCAATTT
* * *
18509012 ACAACATTTATACACCTCAA-TT
1 ACAGCATTTAAACACTTCAATTT
*
18509034 ACAGCGA-TAAAACA-TCTCAATTT
1 ACAGC-ATTTAAACACT-TCAATTT
* ** *
18509057 CCAGCAACTAAACACTTCTATTT
1 ACAGCATTTAAACACTTCAATTT
* * * *
18509080 GCAGTACTTAAAAACTTCAATTT
1 ACAGCATTTAAACACTTCAATTT
* *
18509103 ACAACATTTAAGCACTTCAATTT
1 ACAGCATTTAAACACTTCAATTT
18509126 ACAGCATTTAAACACTTCAATTT
1 ACAGCATTTAAACACTTCAATTT
* * *
18509149 TCATCACTTT-AACA-TCTCAATTA
1 ACAGCA-TTTAAACACT-TCAATTT
** * *
18509172 ACAATATTTATACACCTCAA-TT
1 ACAGCATTTAAACACTTCAATTT
* * *
18509194 ACATCAATAAAACA-TCTCAATTT
1 ACAGCATTTAAACACT-TCAATTT
* **
18509217 CCAGCAACTAAACACTTCAATTT
1 ACAGCATTTAAACACTTCAATTT
* **
18509240 GCAATATTTAAACACTTCAATTT
1 ACAGCATTTAAACACTTCAATTT
*
18509263 ATAGCATTTAAACACTTCAATTT
1 ACAGCATTTAAACACTTCAATTT
18509286 ACAGCATTTAAACA
1 ACAGCATTTAAACA
18509300 GCAGCAACCA
Statistics
Matches: 544, Mismatches: 116, Indels: 78
0.74 0.16 0.11
Matches are distributed among these distances:
22 98 0.18
23 432 0.79
24 13 0.02
25 1 0.00
ACGTcount: A:0.39, C:0.23, G:0.05, T:0.34
Consensus pattern (23 bp):
ACAGCATTTAAACACTTCAATTT
Found at i:18511842 original size:27 final size:27
Alignment explanation
Indices: 18511812--18512016 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
18511802 ATATTGAGTC
* * * *
18511812 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
18511839 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18511866 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
18511894 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
18511921 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
18511948 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18511975 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18512002 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
18512017 GTACAATTTA
Statistics
Matches: 157, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 24 0.15
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:18520121 original size:27 final size:27
Alignment explanation
Indices: 18520091--18520295 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
18520081 ATATTGAGTC
* * * *
18520091 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
18520118 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18520145 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
18520173 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
18520200 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
18520227 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18520254 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18520281 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
18520296 GTACAATTTA
Statistics
Matches: 157, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 24 0.15
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:18526262 original size:10 final size:10
Alignment explanation
Indices: 18526247--18526294 Score: 60
Period size: 10 Copynumber: 4.6 Consensus size: 10
18526237 CATAAATCAC
18526247 TTTTTTCGAT
1 TTTTTTCGAT
**
18526257 TTTTTTTAAT
1 TTTTTTCGAT
18526267 TTTTTTCGATTT
1 TTTTTTCGA--T
18526279 TTTTTTCGAT
1 TTTTTTCGAT
18526289 TTTTTT
1 TTTTTT
18526295 TTGAATTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
10 22 0.69
12 10 0.31
ACGTcount: A:0.10, C:0.06, G:0.06, T:0.77
Consensus pattern (10 bp):
TTTTTTCGAT
Found at i:18526263 original size:11 final size:11
Alignment explanation
Indices: 18526247--18526306 Score: 70
Period size: 12 Copynumber: 5.5 Consensus size: 11
18526237 CATAAATCAC
18526247 TTTTTTCGATT
1 TTTTTTCGATT
*
18526258 TTTTTT--AAT
1 TTTTTTCGATT
18526267 TTTTTTCGATTT
1 TTTTTTCGA-TT
18526279 TTTTTTCGATT
1 TTTTTTCGATT
*
18526290 TTTTTTTGAATT
1 TTTTTTCG-ATT
18526302 TTTTT
1 TTTTT
18526307 AACTTGTATA
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
9 8 0.19
11 16 0.38
12 18 0.43
ACGTcount: A:0.12, C:0.05, G:0.07, T:0.77
Consensus pattern (11 bp):
TTTTTTCGATT
Found at i:18526303 original size:10 final size:12
Alignment explanation
Indices: 18526247--18526306 Score: 60
Period size: 11 Copynumber: 5.5 Consensus size: 12
18526237 CATAAATCAC
18526247 TTTTTTCGAT-T
1 TTTTTTCGATAT
18526258 TTTTTT--A-AT
1 TTTTTTCGATAT
*
18526267 TTTTTTCGATTT
1 TTTTTTCGATAT
18526279 TTTTTTCGAT-T
1 TTTTTTCGATAT
*
18526290 TTTTTTTGA-AT
1 TTTTTTCGATAT
18526301 TTTTTT
1 TTTTTT
18526307 AACTTGTATA
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
9 8 0.19
11 23 0.55
12 11 0.26
ACGTcount: A:0.12, C:0.05, G:0.07, T:0.77
Consensus pattern (12 bp):
TTTTTTCGATAT
Found at i:18528944 original size:779 final size:779
Alignment explanation
Indices: 18527441--18531335 Score: 7259
Period size: 779 Copynumber: 5.0 Consensus size: 779
18527431 CTTCATGCAT
* *
18527441 GTGTGGGTGTCCTTTGGCCGAATGGTCACCTTGGAGAATGAAGAGATAGCACACCATACATAAAT
1 GTGTGAGTGTCCTTTGGCCGAATGGTCACCTTGGAGAATGAAGAGATAGCACACCATACATGAAT
*
18527506 GGAAACATTCATGAACCTTAAAGACATTGAATATGGTCATACATGCACTTGGCCGAACATGCTCC
66 GGAAACATTCATGAACCTTAAAGACATTGAATATGGTCATACATGCACTTGGCCGAACATGCACC
18527571 TAAGAGATTCAAGTCCCCCAACCGTCCATGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCAT
131 TAAGAGATTCAAGTCCCCCAACCGTCCATGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCAT
*
18527636 ATGTCCATTGTGTTTCTACAAGAAATGTGAACAGAATTAATTCAAACTAATGTGAACACAAATAT
196 ATGTCCATTGCGTTTCTACAAGAAATGTGAACAGAATTAATTCAAACTAATGTGAACACAAATAT
* *
18527701 CAACATTAAATTCGGTTATAACAAATTTAATTATCATCAATAAACACTTTTAAGACATACTTAAT
261 CAACATTAAATTCGGTTATGACAAATTTAATTATCATAAATAAACACTTTTAAGACATACTTAAT
* * *
18527766 ATAACTAATGTGAACTAAATTTAATATGTAGGATATTAATTAGCTAATTATTGAACTTATTAATT
326 ATAGCTAATGTGAATTAAATTTAATATGTAGGATATTAATTAACTAATTATTGAACTTATTAATT
*
18527831 AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAACTCCATGAGCTGATGGTTAATTCATGAGC
391 AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAACTCCACGAGCTGATGGTTAATTCATGAGC
*
18527896 TAAACCCGAGCTGGGCTTAAACTCGTGAGCTGATAATGAGCTGGTCCTGAGCTAATGAGCTGGTG
456 TAAACCCGAGCTGGGCTTAAACTCGTGAGCTGATAATGAGCTGGTCCCGAGCTAATGAGCTGGTG
* *
18527961 TGGAGCTACATGGGAGCTAACTTGAACTGAAGGTGAGCTCGGTGAGCTAAACTGAACTTGTAGAA
521 TGGAGCTACATGGGAGCTAACTTGAACTGAAGGTGAGCCCGGTGAGCTGAACTGAACTTGTAGAA
18528026 AAGTTCGGCATGGATTTCCAAAATGGCCACTAACTGGTTCGATAGGTCTAGCATTGACATCATCC
586 AAGTTCGGCATGGATTTCCAAAATGGCCACTAACTGGTTCGATAGGTCTAGCATTGACATCATCC
* * *
18528091 CACACATGCTGAACTAAAGCTATAACGTCGTCTTTAAATTGTTTTGCATGAGCCCTTGTGATCGG
651 CACACATGCTGAACTAAAGCTATAACGGCTTCTTTAAATTGTTTTGCACGAGCCCTTGTGATCGG
* *
18528156 CCCTTGAGGTAGCACCATCAGATCTCGGCATGGACTTGACTTATGGGAAGCCGTGATCGTATCA
716 CCCTTGAGGTAGCACCATCGGATCTCGGCTTGGACTTGACTTATGGGAAGCCGTGATCGTATCA
*
18528220 GTGTGAGTGTCCTTTGGCAGAATGGTCACCTTGGAGAATGAAGAGATAGCACACCATACATGAAT
1 GTGTGAGTGTCCTTTGGCCGAATGGTCACCTTGGAGAATGAAGAGATAGCACACCATACATGAAT
*
18528285 GGAAACATTCATGAACCTTAAAGACATTGAATATGGTCACACATGCACTTGGCCGAACATGCACC
66 GGAAACATTCATGAACCTTAAAGACATTGAATATGGTCATACATGCACTTGGCCGAACATGCACC
*
18528350 TAAGAGATTCAAGTCCCCCAACCATCCATGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCAT
131 TAAGAGATTCAAGTCCCCCAACCGTCCATGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCAT
*
18528415 ATGTCCATTGCGTTTCTACAAGAAATGTGAACAGAATTAATTCAAACTAATATGAACACAAATAT
196 ATGTCCATTGCGTTTCTACAAGAAATGTGAACAGAATTAATTCAAACTAATGTGAACACAAATAT
*
18528480 CAACATTAAATTCAGTTATGACAAATTTAATTATCATAAATAAACACTTTTAAGACATACTTAAT
261 CAACATTAAATTCGGTTATGACAAATTTAATTATCATAAATAAACACTTTTAAGACATACTTAAT
*
18528545 ATAGCTAACGTGAATTAAATTTAATATGTAGGATATTAATTAACTAATTATTGAACTTATTAATT
326 ATAGCTAATGTGAATTAAATTTAATATGTAGGATATTAATTAACTAATTATTGAACTTATTAATT
18528610 AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAACTCCACGAGCTGATGGTTAATTCATGAGC
391 AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAACTCCACGAGCTGATGGTTAATTCATGAGC
*
18528675 TAAACCCGAGCTGGGCTTAAACTCGTGAGCTGATAATGAGCTGGTCCCGAGCTAATGAGCTAGTG
456 TAAACCCGAGCTGGGCTTAAACTCGTGAGCTGATAATGAGCTGGTCCCGAGCTAATGAGCTGGTG
*
18528740 TGGAGCTACATGGGAGCTAACTTGAACTGAAGGTGAGCCCGGTGAGTTGAACTGAACTTGTAGAA
521 TGGAGCTACATGGGAGCTAACTTGAACTGAAGGTGAGCCCGGTGAGCTGAACTGAACTTGTAGAA
*
18528805 AAGTTCGGCATGGATTTCCAAAATGGCCACTAACTGGTTCGATAGGTCGAGCATTGACATCATCC
586 AAGTTCGGCATGGATTTCCAAAATGGCCACTAACTGGTTCGATAGGTCTAGCATTGACATCATCC
* *
18528870 CACACATGCTGAACTAAAGCTATAACGGCTTCTTTAAATTGTTTTGCACGAGCCCTTATGATCGC
651 CACACATGCTGAACTAAAGCTATAACGGCTTCTTTAAATTGTTTTGCACGAGCCCTTGTGATCGG
18528935 CCCTTGAGGTAGCACCATCGGATCTCGGCTTGGACTTGACTTATGGGAAGCCGTGATCGTATCA
716 CCCTTGAGGTAGCACCATCGGATCTCGGCTTGGACTTGACTTATGGGAAGCCGTGATCGTATCA
18528999 GTGTGAGTGTCCTTTGGCCGAATGGTCACCTTGGAGAATGAAGAGATAGCACACCATACATGAAT
1 GTGTGAGTGTCCTTTGGCCGAATGGTCACCTTGGAGAATGAAGAGATAGCACACCATACATGAAT
* *
18529064 GGAAACATTCATGAACCTTAAAAACATTGAATATGGTCATACATGCACTTGGCCGAACATGTACC
66 GGAAACATTCATGAACCTTAAAGACATTGAATATGGTCATACATGCACTTGGCCGAACATGCACC
18529129 TAAGAGATTCAAGTCCCCCAACCGTCCATGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCAT
131 TAAGAGATTCAAGTCCCCCAACCGTCCATGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCAT
18529194 ATGTCCATTGCGTTTCTACAAGAAATGTGAACAGAATTAATTCAAACTAATGTGAACACAAATAT
196 ATGTCCATTGCGTTTCTACAAGAAATGTGAACAGAATTAATTCAAACTAATGTGAACACAAATAT
*
18529259 CAACATTAAATTCGGTTATGACAAATTTAATTATCATCAATAAACACTTTTAAGACATACTTAAT
261 CAACATTAAATTCGGTTATGACAAATTTAATTATCATAAATAAACACTTTTAAGACATACTTAAT
18529324 ATAGCTAATGTGAATTAAATTTAATATGTAGGATATTAATTAACTAATTATTGAACTTATTAATT
326 ATAGCTAATGTGAATTAAATTTAATATGTAGGATATTAATTAACTAATTATTGAACTTATTAATT
*
18529389 AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAAATCCACGAGCTGATGGTTAATTCATGAGC
391 AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAACTCCACGAGCTGATGGTTAATTCATGAGC
* *
18529454 TAAACCCGAGCTGGGCTTAAACTTGTAAGCTGATAATGAGCTGGTCCCGAGCTAATGAGCTGGTG
456 TAAACCCGAGCTGGGCTTAAACTCGTGAGCTGATAATGAGCTGGTCCCGAGCTAATGAGCTGGTG
18529519 TGGAGCTACATGGGAGCTAACTTGAACTGAAGGTGAGCCCGGTGAGCTGAACTGAACTTGTAGAA
521 TGGAGCTACATGGGAGCTAACTTGAACTGAAGGTGAGCCCGGTGAGCTGAACTGAACTTGTAGAA
*
18529584 AAGTTCGACATGGATTTCCAAAATGGCCACTAACTGGTTCGATAGGTCTAGCATTGACATCATCC
586 AAGTTCGGCATGGATTTCCAAAATGGCCACTAACTGGTTCGATAGGTCTAGCATTGACATCATCC
*
18529649 CACACATGCTGAACTAAAGCTATAACGGCTTCTTTAAATTGTTTTGCACGAGCCCTTGTGATCAG
651 CACACATGCTGAACTAAAGCTATAACGGCTTCTTTAAATTGTTTTGCACGAGCCCTTGTGATCGG
*
18529714 CCCTTGAGGTAGCACCATCGGATCTCGGCTTGGACTTGATTTATGGGAAGCCGTGATCGTATCA
716 CCCTTGAGGTAGCACCATCGGATCTCGGCTTGGACTTGACTTATGGGAAGCCGTGATCGTATCA
*
18529778 GTGTGAGTGTCCTTTTGCCGAATGGTCACCTTGGAGAATGAAGAGATAGCACACCATACATGAAT
1 GTGTGAGTGTCCTTTGGCCGAATGGTCACCTTGGAGAATGAAGAGATAGCACACCATACATGAAT
18529843 GGAAACATTCATGAACCTTAAAGACATTGAATATGGTCATACATGCACTTGGCCGAACATGCACC
66 GGAAACATTCATGAACCTTAAAGACATTGAATATGGTCATACATGCACTTGGCCGAACATGCACC
18529908 TAAGAGATTCAAGTCCCCCAACCGTCCATGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCAT
131 TAAGAGATTCAAGTCCCCCAACCGTCCATGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCAT
*
18529973 ATGTCCATTGCGTTTCTACAAGAAATGTGAACAGAATTAAGTCAAACTAATGTGAACACAAATAT
196 ATGTCCATTGCGTTTCTACAAGAAATGTGAACAGAATTAATTCAAACTAATGTGAACACAAATAT
18530038 CAACATTAAATTCGGTTATGACAAATTTAATTATCATAAATAAACACTTTTAAGACATACTTAAT
261 CAACATTAAATTCGGTTATGACAAATTTAATTATCATAAATAAACACTTTTAAGACATACTTAAT
*
18530103 ATAGCTAATGTGAACTAAATTTAATATGTAGGATATTAATTAACTAATTATTGAACTTATTAATT
326 ATAGCTAATGTGAATTAAATTTAATATGTAGGATATTAATTAACTAATTATTGAACTTATTAATT
*
18530168 AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAACTCCACGAGCTGATTGTTAATTCATGAGC
391 AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAACTCCACGAGCTGATGGTTAATTCATGAGC
* *
18530233 TAGACCCGAGCTAGGCTTAAACTCGTGAGCTGATAATGAGCTGGTCCCGAGCTAATGAGCTGGTG
456 TAAACCCGAGCTGGGCTTAAACTCGTGAGCTGATAATGAGCTGGTCCCGAGCTAATGAGCTGGTG
18530298 TGGAGCTACATGGGAGCTAACTTGAACTGAAGGTGAGCCCGGTGAGCTGAACTGAACTTGTAGAA
521 TGGAGCTACATGGGAGCTAACTTGAACTGAAGGTGAGCCCGGTGAGCTGAACTGAACTTGTAGAA
* * *
18530363 AAGTTCAGCATGGATTTCCAAAATGGCCACTGATTGGTTCGATAGGTCTAGCATTGACATCATCC
586 AAGTTCGGCATGGATTTCCAAAATGGCCACTAACTGGTTCGATAGGTCTAGCATTGACATCATCC
18530428 CACACATGCTGAACTAAAGCTATAACGGCTTCTTTAAATTGTTTTGCACGAGCCCTTGTGATCGG
651 CACACATGCTGAACTAAAGCTATAACGGCTTCTTTAAATTGTTTTGCACGAGCCCTTGTGATCGG
18530493 CCCTTGAGGTAGCACCATCGGATCTCGGCTTGGACTTGACTTATGGGAAGCCGTGATCGTATCA
716 CCCTTGAGGTAGCACCATCGGATCTCGGCTTGGACTTGACTTATGGGAAGCCGTGATCGTATCA
18530557 GTGTGAGTGTCCTTTGGCCGAATGGTCACCTTGGAGAATGAAGAGATAGCACACCATACATGAAT
1 GTGTGAGTGTCCTTTGGCCGAATGGTCACCTTGGAGAATGAAGAGATAGCACACCATACATGAAT
18530622 GGAAACATTCATGAACCTTAAAGACATTGAATATGGTCATACATGCACTTGGCCGAACATGCACC
66 GGAAACATTCATGAACCTTAAAGACATTGAATATGGTCATACATGCACTTGGCCGAACATGCACC
*
18530687 TAAGAGATTCAAGTCCCCCAACTGTCCATGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCAT
131 TAAGAGATTCAAGTCCCCCAACCGTCCATGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCAT
18530752 ATGTCCATTGCGTTTCTACAAGAAATGTGAACAGAATTAATTCAAACTAATGTGAACACAAATAT
196 ATGTCCATTGCGTTTCTACAAGAAATGTGAACAGAATTAATTCAAACTAATGTGAACACAAATAT
*
18530817 CAACATTAAATTCGGTTATGACAAATTTAATTATCATTAATAAACACTTTTAAGACATACTTAAT
261 CAACATTAAATTCGGTTATGACAAATTTAATTATCATAAATAAACACTTTTAAGACATACTTAAT
18530882 ATAGCTAATGTGAATTAAATTTAATATGTAGGATATTAATTAACTAATTATTGAACTTATTAATT
326 ATAGCTAATGTGAATTAAATTTAATATGTAGGATATTAATTAACTAATTATTGAACTTATTAATT
18530947 AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAACTCCACGAGCTGATGGTTAATTCATGAGC
391 AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAACTCCACGAGCTGATGGTTAATTCATGAGC
*
18531012 TAAACCCGAGCTGGGCCTAAACTCGTGAGCTGATAATGAGCTGGTCCCGAGCTAATGAGCTGGTG
456 TAAACCCGAGCTGGGCTTAAACTCGTGAGCTGATAATGAGCTGGTCCCGAGCTAATGAGCTGGTG
* *
18531077 TGGAGCTACATAGGAGCTAACTTGAACTGAAGGTGAGCTCGGTGAGCTGAACTGAACTTGTAGAA
521 TGGAGCTACATGGGAGCTAACTTGAACTGAAGGTGAGCCCGGTGAGCTGAACTGAACTTGTAGAA
* *
18531142 AAGTTCGGCATGGATTTTCAAAATGGCCACTAACTTGTTCGATAGGTCTAGCATTGACATCATCC
586 AAGTTCGGCATGGATTTCCAAAATGGCCACTAACTGGTTCGATAGGTCTAGCATTGACATCATCC
* **
18531207 CATACATGCTGAACTAAAGCTATAATAGCTTCTTTAAATTGTTTTGCACGAGCCCTTGTGATCGG
651 CACACATGCTGAACTAAAGCTATAACGGCTTCTTTAAATTGTTTTGCACGAGCCCTTGTGATCGG
* *
18531272 CCCTTTAGGTAGCACCATCGGATCTCGGCTTGGACTTGACTTATGGGAAGCTGTGATCGTATCA
716 CCCTTGAGGTAGCACCATCGGATCTCGGCTTGGACTTGACTTATGGGAAGCCGTGATCGTATCA
18531336 ACCATAGCCA
Statistics
Matches: 3028, Mismatches: 88, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
779 3028 1.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.29
Consensus pattern (779 bp):
GTGTGAGTGTCCTTTGGCCGAATGGTCACCTTGGAGAATGAAGAGATAGCACACCATACATGAAT
GGAAACATTCATGAACCTTAAAGACATTGAATATGGTCATACATGCACTTGGCCGAACATGCACC
TAAGAGATTCAAGTCCCCCAACCGTCCATGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCAT
ATGTCCATTGCGTTTCTACAAGAAATGTGAACAGAATTAATTCAAACTAATGTGAACACAAATAT
CAACATTAAATTCGGTTATGACAAATTTAATTATCATAAATAAACACTTTTAAGACATACTTAAT
ATAGCTAATGTGAATTAAATTTAATATGTAGGATATTAATTAACTAATTATTGAACTTATTAATT
AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAACTCCACGAGCTGATGGTTAATTCATGAGC
TAAACCCGAGCTGGGCTTAAACTCGTGAGCTGATAATGAGCTGGTCCCGAGCTAATGAGCTGGTG
TGGAGCTACATGGGAGCTAACTTGAACTGAAGGTGAGCCCGGTGAGCTGAACTGAACTTGTAGAA
AAGTTCGGCATGGATTTCCAAAATGGCCACTAACTGGTTCGATAGGTCTAGCATTGACATCATCC
CACACATGCTGAACTAAAGCTATAACGGCTTCTTTAAATTGTTTTGCACGAGCCCTTGTGATCGG
CCCTTGAGGTAGCACCATCGGATCTCGGCTTGGACTTGACTTATGGGAAGCCGTGATCGTATCA
Found at i:18534309 original size:29 final size:29
Alignment explanation
Indices: 18534276--18534334 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 29
18534266 GTTTTCATGA
18534276 TTATGAAC-TTAT-ATTTTATTTTGGGACTT
1 TTATGAACTTTATGATTTTA-TTTGGG-CTT
*
18534305 TTATGGACTTTATGATTTTATTTGGGCTT
1 TTATGAACTTTATGATTTTATTTGGGCTT
18534334 T
1 T
18534335 AATTTTTGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
29 11 0.41
30 10 0.37
31 6 0.22
ACGTcount: A:0.20, C:0.07, G:0.17, T:0.56
Consensus pattern (29 bp):
TTATGAACTTTATGATTTTATTTGGGCTT
Found at i:18535661 original size:46 final size:46
Alignment explanation
Indices: 18535594--18535686 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
18535584 GAACGTCCTA
*
18535594 AATACAAGTGTTTATTTATATGCCATCCATTGAACCTTAATTATGC
1 AATACAAGTGTTTATTTATATGCCATCCATTGAACCTTAATCATGC
18535640 AATACAAGTGTTTATTTATATGCCATCCATTGAACCTTAATCATGC
1 AATACAAGTGTTTATTTATATGCCATCCATTGAACCTTAATCATGC
18535686 A
1 A
18535687 TGCACCCTTT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.38
Consensus pattern (46 bp):
AATACAAGTGTTTATTTATATGCCATCCATTGAACCTTAATCATGC
Found at i:18538430 original size:13 final size:12
Alignment explanation
Indices: 18538408--18538442 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
18538398 TTCCGTTCTC
18538408 TTTTTCTTTTTT
1 TTTTTCTTTTTT
*
18538420 GTTTTCTTTTTT
1 TTTTTCTTTTTT
*
18538432 TATTTCTTTTT
1 TTTTTCTTTTT
18538443 CATTCTCAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.03, C:0.09, G:0.03, T:0.86
Consensus pattern (12 bp):
TTTTTCTTTTTT
Found at i:18541043 original size:401 final size:401
Alignment explanation
Indices: 18540300--18541098 Score: 1553
Period size: 401 Copynumber: 2.0 Consensus size: 401
18540290 AAATACATGT
* *
18540300 TGATACGAACCACCTCGGGGAGAGTTGAGTCGTATACGAGTTTGCCCGATCGTCTACGACAAAGT
1 TGATACGAACCACCTCGGGGAGAGTCGAGTCATATACGAGTTTGCCCGATCGTCTACGACAAAGT
18540365 ATCGTTCAGTTTGTTCAAAAAAAATGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTCA
66 ATCGTTCAGTTTGTTCAAAAAAAATGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTCA
18540430 AATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGAATGGAAAGAAGG
131 AATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGAATGGAAAGAAGG
18540495 AACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAGG
196 AACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAGG
18540560 CGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGTG
261 CGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGTG
18540625 AACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAG
326 AACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAG
18540690 AAGAAAATCAA
391 AAGAAAATCAA
*
18540701 TGATACGAACCGCCTCGGGGAGAGTCGAGTCATATACGAGTTTGCCCGATCGTCTACGACAAAGT
1 TGATACGAACCACCTCGGGGAGAGTCGAGTCATATACGAGTTTGCCCGATCGTCTACGACAAAGT
*
18540766 ATCGTTCGGTTTGTTCAAAAAAAATGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTCA
66 ATCGTTCAGTTTGTTCAAAAAAAATGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTCA
*
18540831 AATGAAGGGGTTAAAATATGAATATTAAGGTTTGGTTTAAAGTAAATGAAAGAATGGAAAGAAGG
131 AATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGAATGGAAAGAAGG
18540896 AACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAGG
196 AACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAGG
18540961 CGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGTG
261 CGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGTG
18541026 AACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAG
326 AACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAG
18541091 AAGAAAAT
391 AAGAAAAT
18541099 TCTCACAAGA
Statistics
Matches: 393, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
401 393 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (401 bp):
TGATACGAACCACCTCGGGGAGAGTCGAGTCATATACGAGTTTGCCCGATCGTCTACGACAAAGT
ATCGTTCAGTTTGTTCAAAAAAAATGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTCA
AATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGAATGGAAAGAAGG
AACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAGG
CGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGTG
AACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAG
AAGAAAATCAA
Found at i:18542146 original size:30 final size:30
Alignment explanation
Indices: 18542112--18542208 Score: 99
Period size: 30 Copynumber: 3.2 Consensus size: 30
18542102 TAAACTAAAA
18542112 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * *
18542142 TGAGCTAAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCTAA-GCTTTAGCTCGTGAGCTAAAGT
* *
18542172 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
18542202 TGAGCTA
1 TGAGCTA
18542209 GGAGTGAGCT
Statistics
Matches: 52, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
29 1 0.02
30 46 0.88
31 5 0.10
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:18542817 original size:20 final size:21
Alignment explanation
Indices: 18542764--18542817 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
18542754 GCTAAAAAGT
*
18542764 AGCT-AAATTGAGCTCAAACA
1 AGCTGAAATAGAGCTCAAACA
*
18542784 AGCTGAAATA-AGCTCAAACG
1 AGCTGAAATAGAGCTCAAACA
*
18542804 AGCTG-ATTAGAGCT
1 AGCTGAAATAGAGCT
18542818 TGGGGAGTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 3 0.10
20 22 0.76
21 4 0.14
ACGTcount: A:0.41, C:0.19, G:0.20, T:0.20
Consensus pattern (21 bp):
AGCTGAAATAGAGCTCAAACA
Found at i:18546792 original size:25 final size:25
Alignment explanation
Indices: 18546764--18546842 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
18546754 CTAATGGCCG
18546764 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
18546789 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
18546811 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
18546836 ATGTGAT
1 ATGTGAT
18546843 AAGGCCTAAG
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:18546814 original size:47 final size:47
Alignment explanation
Indices: 18546748--18547214 Score: 750
Period size: 47 Copynumber: 10.1 Consensus size: 47
18546738 GAAATGATAG
18546748 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
18546795 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
18546842 TAAGGCCTAA--GCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
18546887 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
18546934 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
18546981 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
18547028 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG-
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * *
18547074 --AGGCC-GATGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
18547118 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
** * * * * * * *
18547165 -CGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
18547211 TAAG
1 TAAG
18547215 TCCCGAAGGG
Statistics
Matches: 390, Mismatches: 23, Indels: 14
0.91 0.05 0.03
Matches are distributed among these distances:
43 32 0.08
44 5 0.01
45 45 0.12
46 42 0.11
47 266 0.68
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:18547021 original size:139 final size:140
Alignment explanation
Indices: 18546748--18547214 Score: 723
Period size: 139 Copynumber: 3.4 Consensus size: 140
18546738 GAAATGATAG
18546748 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
18546813 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA--GCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
18546876 TATATATGTGA
131 -ATATATGTGA
18546887 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
18546952 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
18547017 TATATATGTGA
131 -ATATATGTGA
* * *
18547028 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG---AGGCC-GATGGCCAAC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * *
18547089 GTGATGGATGTGAAAGTGCATAAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
18547154 TATATATGTGA
131 -ATATATGTGA
** * * * * * * *
18547165 -CGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
18547215 TCCCGAAGGG
Statistics
Matches: 308, Mismatches: 15, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
136 36 0.12
137 80 0.26
138 5 0.02
139 106 0.34
141 81 0.26
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.28
Consensus pattern (140 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
ATATATGTGA
Found at i:18547388 original size:36 final size:37
Alignment explanation
Indices: 18547333--18547410 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
18547323 CCGAGCTCTA
* *
18547333 AAGACCCGATGACTACGTGTGG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
18547369 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
18547406 AAGAC
1 AAGAC
18547411 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:18549308 original size:43 final size:43
Alignment explanation
Indices: 18549260--18549362 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
18549250 TTGGTTTTCA
18549260 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
18549303 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
18549346 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
18549363 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:18549379 original size:29 final size:29
Alignment explanation
Indices: 18549344--18549417 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
18549334 GTTGTGAGAT
* *
18549344 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
18549373 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
18549402 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
18549418 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:18549855 original size:40 final size:40
Alignment explanation
Indices: 18549728--18549922 Score: 175
Period size: 40 Copynumber: 4.9 Consensus size: 40
18549718 TCGAATGATG
** *
18549728 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
18549768 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
*
18549808 TCC-GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
18549847 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
18549887 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
18549923 CGTGTATTCG
Statistics
Matches: 128, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
38 1 0.01
39 17 0.13
40 103 0.80
41 7 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:18549863 original size:79 final size:80
Alignment explanation
Indices: 18549732--18549923 Score: 212
Period size: 80 Copynumber: 2.4 Consensus size: 80
18549722 ATGATGTCCG
** *
18549732 GGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCATTGG
1 GGCTAAGTCCCGAAGAGCATTCATGCT-AGTGACCATATCCGGACTAAGATCCGAAGAGCATTCG
*
18549794 TGCGAGTTACTAAATCC
65 TGCGAGTGA-TAAATCC
** * *
18549811 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCATTCGT
1 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCATTCGT
* *
18549875 GCTAGTGATATATCC
66 GCGAGTGATAAATCC
* * *
18549890 GTGCTAAATCCCGAAGAGCAATCATGCTGGTGAC
1 G-GCTAAGTCCCGAAGAGCATTCATGCTAGTGAC
18549924 GTGTATTCGG
Statistics
Matches: 95, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
79 41 0.43
80 48 0.51
81 6 0.06
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCATTCGT
GCGAGTGATAAATCC
Found at i:18561447 original size:27 final size:27
Alignment explanation
Indices: 18561417--18561621 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
18561407 ATATTGAGTC
* * * *
18561417 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
18561444 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18561471 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
18561499 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
18561526 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
18561553 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18561580 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
18561607 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
18561622 GTACAATTTA
Statistics
Matches: 157, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 24 0.15
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:18564679 original size:3 final size:3
Alignment explanation
Indices: 18564673--18564701 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
18564663 TTTTTTTCTT
18564673 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
18564702 TACTAAAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:18565107 original size:21 final size:21
Alignment explanation
Indices: 18565083--18565145 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
18565073 GGGTTTTATG
*
18565083 GTTTAAAATTTAAGATTTAGA
1 GTTTAAGATTTAAGATTTAGA
* * *
18565104 GTTTAGGGTTTAAGGTTTAGA
1 GTTTAAGATTTAAGATTTAGA
*
18565125 GTTTTAAGATTTAGGATTTAG
1 G-TTTAAGATTTAAGATTTAG
18565146 GATTTTGTAT
Statistics
Matches: 33, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
21 18 0.55
22 15 0.45
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (21 bp):
GTTTAAGATTTAAGATTTAGA
Found at i:18565108 original size:14 final size:15
Alignment explanation
Indices: 18565084--18565150 Score: 52
Period size: 14 Copynumber: 4.7 Consensus size: 15
18565074 GGTTTTATGG
*
18565084 TTTAAAATTTA-AGA
1 TTTAAGATTTAGAGA
*
18565098 TTT-AGAGTTTAG-GG
1 TTTAAGA-TTTAGAGA
* *
18565112 TTTAAGGTTTAGAGT
1 TTTAAGATTTAGAGA
18565127 TTTAAGATTTAG-GA
1 TTTAAGATTTAGAGA
*
18565141 TTTAGGATTT
1 TTTAAGATTT
18565151 TGTATTTAAG
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
13 2 0.05
14 26 0.62
15 14 0.33
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.46
Consensus pattern (15 bp):
TTTAAGATTTAGAGA
Found at i:18565109 original size:36 final size:37
Alignment explanation
Indices: 18565067--18565151 Score: 104
Period size: 36 Copynumber: 2.4 Consensus size: 37
18565057 TAGTGTCTAT
*
18565067 AGTTTAGGGTTTTATGGTTTA-AAATTTAAGATTTAG
1 AGTTTAGGGTTTTAAGGTTTAGAAATTTAAGATTTAG
**
18565103 AGTTTAGGG-TTTAAGGTTTAGAGTTTTAAGATTTAG
1 AGTTTAGGGTTTTAAGGTTTAGAAATTTAAGATTTAG
*
18565139 -GATTTAGGATTTT
1 AG-TTTAGGGTTTT
18565152 GTATTTAAGG
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
35 11 0.26
36 28 0.67
37 3 0.07
ACGTcount: A:0.28, C:0.00, G:0.25, T:0.47
Consensus pattern (37 bp):
AGTTTAGGGTTTTAAGGTTTAGAAATTTAAGATTTAG
Found at i:18565587 original size:40 final size:40
Alignment explanation
Indices: 18565497--18565788 Score: 363
Period size: 40 Copynumber: 7.3 Consensus size: 40
18565487 AATATTTTTT
* * * * *
18565497 GCGGTGTTTTTCAGAAAGCACCGCTAATACTCGAATCTATA
1 GCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCG-ATCTATA
* * *
18565538 GCGGCGTTTTTTAAAAAGTGCTGCTAATGCTCTATCTATA
1 GCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCGATCTATA
* * *
18565578 GCGGTGTTTTTTAAAACGCGCCGCTAATGCTCGATTTATA
1 GCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCGATCTATA
* *
18565618 AC-GCGTTTTTT-AAAAGCGCCGCTAATGCTCGACCTATA
1 GCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCGATCTATA
*
18565656 GCGACGTTTTTTAAAAAGCGCCGCTAATGCTCGATCTATA
1 GCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCGATCTATA
** * * *
18565696 GCGTTGTATTTTAAAAAGTGCTGCTAATGCTCGATCTATA
1 GCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCGATCTATA
*
18565736 GCGGCGTTTTTTAAAAAGCGCCGCTAATGCTTGATCTATA
1 GCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCGATCTATA
* *
18565776 GTGGCATTTTTTA
1 GCGGCGTTTTTTA
18565789 TCCAAATGCC
Statistics
Matches: 214, Mismatches: 35, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
38 25 0.12
39 16 0.07
40 148 0.69
41 25 0.12
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.34
Consensus pattern (40 bp):
GCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCGATCTATA
Found at i:18572822 original size:27 final size:29
Alignment explanation
Indices: 18572759--18572822 Score: 71
Period size: 27 Copynumber: 2.3 Consensus size: 29
18572749 AAAAAATAAT
* *
18572759 ATAAATATATTATATGATATAATAGCTTA
1 ATAAATATATTATATGAAATAATAGCTAA
*
18572788 ATATATAT-TTATAT-AAATAATA-CTAA
1 ATAAATATATTATATGAAATAATAGCTAA
18572814 ATTAAATAT
1 A-TAAATAT
18572823 GTGTGAAACT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
26 4 0.13
27 13 0.43
28 6 0.20
29 7 0.23
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (29 bp):
ATAAATATATTATATGAAATAATAGCTAA
Found at i:18573018 original size:58 final size:57
Alignment explanation
Indices: 18572936--18573070 Score: 145
Period size: 56 Copynumber: 2.4 Consensus size: 57
18572926 ACAATTAACG
* * *
18572936 AATAATAAAATAATACAT--AATTTAT-AATAAAAATGTAAGGAATAATATATATAGTA-A
1 AATAATATAATAATA-ATAAAATTTATAAAT-AAAATGT-A-GAATAATATAAATAATATA
* *
18572993 AAT-ATATAATGTATAATAAAATTTATAAATAAAATGTATAATAATATAAATAATATA
1 AATAATATAAT-AATAATAAAATTTATAAATAAAATGTAGAATAATATAAATAATATA
18573050 AATAATATAATAATAATAAAA
1 AATAATATAATAATAATAAAA
18573071 ATAATTTGAT
Statistics
Matches: 66, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
56 22 0.33
57 20 0.30
58 21 0.32
59 3 0.05
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.33
Consensus pattern (57 bp):
AATAATATAATAATAATAAAATTTATAAATAAAATGTAGAATAATATAAATAATATA
Found at i:18573019 original size:12 final size:12
Alignment explanation
Indices: 18573000--18573036 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
18572990 TAAAATATAT
18573000 AATGTATAATAA
1 AATGTATAATAA
*
18573012 AATTTATAAATAA
1 AATGTAT-AATAA
18573025 AATGTATAATAA
1 AATGTATAATAA
18573037 TATAAATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.35
Consensus pattern (12 bp):
AATGTATAATAA
Found at i:18573025 original size:13 final size:13
Alignment explanation
Indices: 18573000--18573033 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
18572990 TAAAATATAT
18573000 AATGTAT-AATAA
1 AATGTATAAATAA
*
18573012 AATTTATAAATAA
1 AATGTATAAATAA
18573025 AATGTATAA
1 AATGTATAA
18573034 TAATATAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (13 bp):
AATGTATAAATAA
Found at i:18573044 original size:9 final size:9
Alignment explanation
Indices: 18573032--18573073 Score: 61
Period size: 9 Copynumber: 4.8 Consensus size: 9
18573022 TAAAATGTAT
18573032 AATAATATA
1 AATAATATA
18573041 AATAATATA
1 AATAATATA
18573050 AATAATAT-
1 AATAATATA
18573058 AATAATAATA
1 AATAAT-ATA
18573068 AA-AATA
1 AATAATA
18573074 ATTTGATATG
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
8 7 0.23
9 22 0.71
10 2 0.06
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (9 bp):
AATAATATA
Found at i:18573072 original size:58 final size:58
Alignment explanation
Indices: 18572936--18573072 Score: 142
Period size: 58 Copynumber: 2.4 Consensus size: 58
18572926 ACAATTAACG
* * *
18572936 AATA-ATAA-AATAATACATAATTTATAATAAAAATGTAAGGAATAATATATATAGTAA
1 AATATATAATAATAATA-AAAATTTATAATAAAAATGTAAGGAATAATATAAATAATAA
* *
18572993 AATATATAATGTATAAT-AAAATTTATAA-ATAAAATGT-A-TAATAATATAAATAATATA
1 AATATATAAT-AATAATAAAAATTTATAATA-AAAATGTAAGGAATAATATAAATAATA-A
18573050 AATAATATAATAATAATAAAAAT
1 AAT-ATATAATAATAATAAAAAT
18573073 AATTTGATAT
Statistics
Matches: 67, Mismatches: 6, Indels: 13
0.78 0.07 0.15
Matches are distributed among these distances:
56 14 0.21
57 15 0.22
58 33 0.49
60 5 0.07
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (58 bp):
AATATATAATAATAATAAAAATTTATAATAAAAATGTAAGGAATAATATAAATAATAA
Found at i:18574702 original size:44 final size:44
Alignment explanation
Indices: 18574643--18575061 Score: 563
Period size: 44 Copynumber: 9.6 Consensus size: 44
18574633 CCCCACCAAC
* * * *
18574643 ACAGAGACGTCAAATCAACTATCTTCGATCTGCTCTCTGACAAC
1 ACAGAGATGCCAAATCTACTATCTTCGATCTGCTCTCTGACAAT
* *
18574687 ACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTAACAAT
1 ACAGAGATGCCAAATCTACTATCTTCGATCTGCTCTCTGACAAT
* * * * * *
18574731 ATAGAAATGCCAAATCTGCTATCTTCGATCTGCTTTCCGTCAAT
1 ACAGAGATGCCAAATCTACTATCTTCGATCTGCTCTCTGACAAT
*
18574775 ACAGAGATGCCAAATCTACTATCTTCGATCTACTCTCTGACAAT
1 ACAGAGATGCCAAATCTACTATCTTCGATCTGCTCTCTGACAAT
* * *
18574819 ACAGAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGGCAAT
1 ACAGAGATGCCAAATCTACTATCTTCGATCTGCTCTCTGACAAT
*
18574863 ACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGACAAT
1 ACAGAGATGCCAAATCTACTATCTTCGATCTGCTCTCTGACAAT
*
18574907 ACAGAGATGCCAAATCTACTATCTTTGATCTGCTCTCTGACAAT
1 ACAGAGATGCCAAATCTACTATCTTCGATCTGCTCTCTGACAAT
* * *
18574951 ACAGAGATGCCAAATCTGCTATCCTCGATCTGCTCTCTGTCAAT
1 ACAGAGATGCCAAATCTACTATCTTCGATCTGCTCTCTGACAAT
* * * * * *
18574995 TCAGAGATGCCAGATGT-C-ATCTTCGATCTACTCTCTGTCACT
1 ACAGAGATGCCAAATCTACTATCTTCGATCTGCTCTCTGACAAT
* *
18575037 ATAGAGATGCCAAATCTGCTATCTT
1 ACAGAGATGCCAAATCTACTATCTT
18575062 TAGAGATGCC
Statistics
Matches: 330, Mismatches: 43, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
42 34 0.10
43 2 0.01
44 294 0.89
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.30
Consensus pattern (44 bp):
ACAGAGATGCCAAATCTACTATCTTCGATCTGCTCTCTGACAAT
Found at i:18574802 original size:88 final size:88
Alignment explanation
Indices: 18574643--18575510 Score: 786
Period size: 88 Copynumber: 9.6 Consensus size: 88
18574633 CCCCACCAAC
* * ** * *
18574643 ACAGAGACGTCAAATCAACTATCTTCGATCTGCTCTCTGACAACACAGAGACGCCAAATCTACTA
1 ACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTACTA
*
18574708 TCTTCGATCTGCTCTCTAACAAT
66 TCTTCGATCTGCTCTCTGACAAT
* * * * *
18574731 ATAGAAATGCCAAATCTGCTATCTTCGATCTGCTTTCCGTCAATACAGAGATGCCAAATCTACTA
1 ACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTACTA
*
18574796 TCTTCGATCTACTCTCTGACAAT
66 TCTTCGATCTGCTCTCTGACAAT
* *
18574819 ACAGAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTGGCAATACAGAGACGCCAAATCTACTA
1 ACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTACTA
18574884 TCTTCGATCTGCTCTCTGACAAT
66 TCTTCGATCTGCTCTCTGACAAT
* * * * *
18574907 ACAGAGATGCCAAATCTACTATCTTTGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTA
1 ACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTACTA
* *
18574972 TCCTCGATCTGCTCTCTGTCAAT
66 TCTTCGATCTGCTCTCTGACAAT
* * * * * * * *
18574995 TCAGAGATGCCAGATGT-C-ATCTTCGATCTACTCTCTGTCACTATAGAGATGCCAAATCTGCTA
1 ACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTACTA
* ** *
18575058 TCTTTAGAGATGC-CAAATCT-ACTAT
66 TC-TTCGATCTGCTC---TCTGACAAT
* ** * ** *
18575083 -CTTCGATCTGTTCTCTGACAATACAGAGATGC--CAAATCTGCTATCTTTGATCTGCTCTCTTA
1 AC--AGAGATG--C-C--A-AAT-CTGCTAT-CTTC-GATCTGC--TC-----TCTG---TC--A
** * * *
18575145 CAATACAGAGAGGCCAAATCTGCTATCTTCGATCAGCTCTCTGACAAT
43 AT--ACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGACAAT
* * *
18575193 ACAGAGATGCCAAATCTGCTATCTTTGATCTGCTCTCT-TACAATACAGAGAGGCCAAATCTGCT
1 ACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGT-CAATACAGAGACGCCAAATCTACT
*
18575257 ATCTTCGATCAGCTCTCTGACAAT
65 ATCTTCGATCTGCTCTCTGACAAT
* * * * *
18575281 ACAGAGATGCCAAATTTGCTATCTTGGATCTACTCTCTGACAATACAGAGACACCAAATCTACTA
1 ACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTACTA
*
18575346 TCTTCGATCTGCTCTTTGACAAT
66 TCTTCGATCTGCTCTCTGACAAT
* * *
18575369 ACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGTCAATACAGAGATG-CAAGATGT-C-
1 ACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAA-ATCTACT
* *
18575431 ATCTTCAATCTGCTCTCTGTCAAT
65 ATCTTCGATCTGCTCTCTGACAAT
* * * * *
18575455 ACAGAGACGCCAAATCTGCTATCTTCAATCTGTTTTCTGACAATACAGAGACGCCA
1 ACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCA
18575511 GATGTCACCG
Statistics
Matches: 645, Mismatches: 95, Indels: 81
0.79 0.12 0.10
Matches are distributed among these distances:
86 110 0.17
87 14 0.02
88 425 0.66
89 7 0.01
90 1 0.00
91 2 0.00
92 2 0.00
94 1 0.00
95 5 0.01
97 1 0.00
98 7 0.01
99 1 0.00
100 4 0.01
101 1 0.00
102 10 0.02
103 3 0.00
104 1 0.00
105 4 0.01
106 1 0.00
107 1 0.00
108 2 0.00
109 7 0.01
110 6 0.01
111 7 0.01
112 22 0.03
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (88 bp):
ACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGTCAATACAGAGACGCCAAATCTACTA
TCTTCGATCTGCTCTCTGACAAT
Found at i:18574885 original size:132 final size:132
Alignment explanation
Indices: 18574643--18575510 Score: 861
Period size: 132 Copynumber: 6.4 Consensus size: 132
18574633 CCCCACCAAC
* * * * * *
18574643 ACAGAGACGTCAAATCAACTATCTTCGATCTGCTCTCTGACAACACAGAGACGCCAAATCTACTA
1 ACAGAGATGCCAAATCTACTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTA
* * * * * *
18574708 TCTTCGATCTGCTCTCTAACAATATAGAAATGCCAAATCTGCTATCTTCGATCTGCTTTCCGTCA
66 TCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACA
18574773 AT
131 AT
*
18574775 ACAGAGATGCCAAATCTACTATCTTCGATCTACTCTCTGACAATACAGAGATGCCAAATCTGCTA
1 ACAGAGATGCCAAATCTACTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTA
* * * *
18574840 TCTTTGATCTGCTCTCTGGCAATACAGAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGACA
66 TCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACA
18574905 AT
131 AT
*
18574907 ACAGAGATGCCAAATCTACTATCTTTGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTA
1 ACAGAGATGCCAAATCTACTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTA
* * * * * * *
18574972 TCCTCGATCTGCTCTCTGTCAATTCAGAGATGCCAGATGT-C-ATCTTCGATCTACTCTCTGTCA
66 TCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACA
*
18575035 CT
131 AT
* * * ** * * **
18575037 ATAGAGATGCCAAATCTGCTATCTTTAGAGATGC-CAAATCT-ACTAT-CTTCGATCTGTTCTCT
1 ACAGAGATGCCAAATCTACTATC-TTCGATCTGCTC---TCTGACAATAC--AGAGATG--C-C-
* ** * *
18575099 GACAATACAGAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTTACAATACAGAGAGGCCAAAT
56 -A-AAT-C-----TGCTATCT-T-----C---GATCTGCTCTCTGACAATACAGAGATGCCAAAT
*
18575164 CTGCTATCTTCGATCAGCTCTCTGACAAT
104 CTGCTATCTTCGATCTGCTCTCTGACAAT
* * * *
18575193 ACAGAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTTACAATACAGAGAGGCCAAATCTGCTA
1 ACAGAGATGCCAAATCTACTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTA
* * * *
18575258 TCTTCGATCAGCTCTCTGACAATACAGAGATGCCAAATTTGCTATCTTGGATCTACTCTCTGACA
66 TCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACA
18575323 AT
131 AT
** *
18575325 ACAGAGACACCAAATCTACTATCTTCGATCTGCTCTTTGACAATACAGAGATGCCAAATCTGCTA
1 ACAGAGATGCCAAATCTACTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTA
* * * * *
18575390 TCTTCGATCTGCTCTCCGTCAATACAGAGATG-CAAGATGT-C-ATCTTCAATCTGCTCTCTGTC
66 TCTTCGATCTGCTCTCTGACAATACAGAGATGCCAA-ATCTGCTATCTTCGATCTGCTCTCTGAC
18575452 AAT
130 AAT
* * * * * *
18575455 ACAGAGACGCCAAATCTGCTATCTTCAATCTGTTTTCTGACAATACAGAGACGCCA
1 ACAGAGATGCCAAATCTACTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCA
18575511 GATGTCACCG
Statistics
Matches: 610, Mismatches: 93, Indels: 68
0.79 0.12 0.09
Matches are distributed among these distances:
130 112 0.18
131 13 0.02
132 360 0.59
133 7 0.01
135 2 0.00
136 1 0.00
138 1 0.00
139 3 0.00
140 2 0.00
141 5 0.01
145 4 0.01
146 2 0.00
147 3 0.00
148 1 0.00
150 1 0.00
151 2 0.00
153 6 0.01
154 33 0.05
155 9 0.01
156 43 0.07
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (132 bp):
ACAGAGATGCCAAATCTACTATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTA
TCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACA
AT
Found at i:18575065 original size:24 final size:24
Alignment explanation
Indices: 18575038--18575085 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
18575028 TCTGTCACTA
*
18575038 TAGAGATGCCAAATCTGCTATCTT
1 TAGAGATGCCAAATCTACTATCTT
18575062 TAGAGATGCCAAATCTACTATCTT
1 TAGAGATGCCAAATCTACTATCTT
18575086 CGATCTGTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (24 bp):
TAGAGATGCCAAATCTACTATCTT
Found at i:18575098 original size:68 final size:66
Alignment explanation
Indices: 18574997--18575130 Score: 187
Period size: 68 Copynumber: 2.0 Consensus size: 66
18574987 CTGTCAATTC
* * * * *
18574997 AGAGATGCCAGATGTCATCTTCGATCTACTCTCTGTCACTATAGAGATGCCAAATCTGCTATCTT
1 AGAGATGCCAAATCTCATCTTCGATCTACTCTCTGACAATACAGAGATGCCAAATCTGCTATCTT
18575062 T
66 T
**
18575063 AGAGATGCCAAATCTACTATCTTCGATCTGTTCTCTGACAATACAGAGATGCCAAATCTGCTATC
1 AGAGATGCCAAATCT-C-ATCTTCGATCTACTCTCTGACAATACAGAGATGCCAAATCTGCTATC
18575128 TTT
64 TTT
18575131 GATCTGCTCT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
66 13 0.22
67 1 0.02
68 45 0.76
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.33
Consensus pattern (66 bp):
AGAGATGCCAAATCTCATCTTCGATCTACTCTCTGACAATACAGAGATGCCAAATCTGCTATCTT
T
Found at i:18575113 original size:44 final size:44
Alignment explanation
Indices: 18575063--18575510 Score: 623
Period size: 44 Copynumber: 10.2 Consensus size: 44
18575053 TGCTATCTTT
* *
18575063 AGAGATGCCAAATCTACTATCTTCGATCTGTTCTCTGACAATAC
1 AGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
* *
18575107 AGAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTTACAATAC
1 AGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
* *
18575151 AGAGAGGCCAAATCTGCTATCTTCGATCAGCTCTCTGACAATAC
1 AGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
* *
18575195 AGAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTTACAATAC
1 AGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
* *
18575239 AGAGAGGCCAAATCTGCTATCTTCGATCAGCTCTCTGACAATAC
1 AGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
* * *
18575283 AGAGATGCCAAATTTGCTATCTTGGATCTACTCTCTGACAATAC
1 AGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
** * *
18575327 AGAGACACCAAATCTACTATCTTCGATCTGCTCTTTGACAATAC
1 AGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
* *
18575371 AGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCCGTCAATAC
1 AGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
* * *
18575415 AGAGATG-CAAGATGT-C-ATCTTCAATCTGCTCTCTGTCAATAC
1 AGAGATGCCAA-ATCTGCTATCTTCGATCTGCTCTCTGACAATAC
* * * *
18575457 AGAGACGCCAAATCTGCTATCTTCAATCTGTTTTCTGACAATAC
1 AGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
*
18575501 AGAGACGCCA
1 AGAGATGCCA
18575511 GATGTCACCG
Statistics
Matches: 358, Mismatches: 42, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
42 33 0.09
43 8 0.02
44 317 0.89
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (44 bp):
AGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATAC
Found at i:18583933 original size:27 final size:29
Alignment explanation
Indices: 18583870--18583933 Score: 71
Period size: 27 Copynumber: 2.3 Consensus size: 29
18583860 AAACAATAAT
*
18583870 ATAAATATATTATATGATATAATAGCTTA
1 ATAAATATATTATATGAAATAATAGCTTA
*
18583899 ATATATAT-TTATAT-AAATAATA-CTATA
1 ATAAATATATTATATGAAATAATAGCT-TA
*
18583926 TTAAATAT
1 ATAAATAT
18583934 GTGTGAAACT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
26 2 0.07
27 15 0.50
28 6 0.20
29 7 0.23
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (29 bp):
ATAAATATATTATATGAAATAATAGCTTA
Found at i:18584120 original size:14 final size:14
Alignment explanation
Indices: 18584087--18584164 Score: 60
Period size: 14 Copynumber: 5.9 Consensus size: 14
18584077 AATGTAAGGA
18584087 ATAATATAT-ATAGT
1 ATAATATATAAT-GT
*
18584101 AAAATATATAATGT
1 ATAATATATAATGT
*
18584115 ATAATA-A-AATTT
1 ATAATATATAATGT
*
18584127 ATAA-ATAAAATGT
1 ATAATATATAATGT
*
18584140 ATAATATA-AATAAT
1 ATAATATATAAT-GT
18584154 ATAATA-ATAAT
1 ATAATATATAAT
18584165 AAAAATAATT
Statistics
Matches: 53, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
11 1 0.02
12 9 0.17
13 13 0.25
14 28 0.53
15 2 0.04
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (14 bp):
ATAATATATAATGT
Found at i:18584129 original size:12 final size:12
Alignment explanation
Indices: 18584114--18584165 Score: 50
Period size: 13 Copynumber: 4.0 Consensus size: 12
18584104 ATATATAATG
*
18584114 TATAATAAAATT
1 TATAATAAAATA
*
18584126 TATAAATAAAATG
1 TAT-AATAAAATA
18584139 TATAATATAAATAA
1 TATAATA-AAAT-A
18584153 TATAATAATAATA
1 TATAATAA-AATA
18584166 AAAATAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
12 7 0.21
13 17 0.50
14 10 0.29
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (12 bp):
TATAATAAAATA
Found at i:18584135 original size:13 final size:13
Alignment explanation
Indices: 18584110--18584149 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
18584100 TAAAATATAT
18584110 AATGTAT-AATAA
1 AATGTATAAATAA
*
18584122 AATTTATAAATAA
1 AATGTATAAATAA
18584135 AATGTATAATATAA
1 AATGTATAA-ATAA
18584149 A
1 A
18584150 TAATATAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 6 0.25
13 13 0.54
14 5 0.21
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (13 bp):
AATGTATAAATAA
Found at i:18584151 original size:45 final size:43
Alignment explanation
Indices: 18584043--18584168 Score: 110
Period size: 45 Copynumber: 2.7 Consensus size: 43
18584033 TTACACAATT
*
18584043 AATAAATAATAAAATAATACATAATTTATAATAAAATGTAAGGAATAA
1 AATATATAATAAAAT-AT--ATAA-TTATAATAAAATGTAA-GAATAA
* * *
18584091 TATATATAGTAAAATATATAATGTATAATAAAATTTATA-AATAA
1 AATATATAATAAAATATATAAT-TATAATAAAATGTA-AGAATAA
* *
18584135 AATGTATAATATAAATAATATAATAATAATAAAA
1 AATATATAATA-AAAT-ATATAATTATAATAAAA
18584169 ATAATTTGAT
Statistics
Matches: 66, Mismatches: 8, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
44 14 0.21
45 30 0.45
46 8 0.12
47 2 0.03
48 12 0.18
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.33
Consensus pattern (43 bp):
AATATATAATAAAATATATAATTATAATAAAATGTAAGAATAA
Found at i:18585527 original size:8 final size:8
Alignment explanation
Indices: 18585514--18585543 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
18585504 AAACCTTAAA
18585514 ATTATTTT
1 ATTATTTT
18585522 ATTATTTT
1 ATTATTTT
18585530 ATTATTTT
1 ATTATTTT
*
18585538 TTTATT
1 ATTATT
18585544 CTATCTCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (8 bp):
ATTATTTT
Found at i:18586863 original size:31 final size:29
Alignment explanation
Indices: 18586806--18586876 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 29
18586796 TTTTTTAAAT
18586806 ATGTATAATAAAATTAAAATTAAAATTTC
1 ATGTATAATAAAATTAAAATTAAAATTTC
* *
18586835 ATGTATACATATAAATTATAATTTAAATTTC
1 ATGTATA-ATA-AAATTAAAATTAAAATTTC
18586866 AAATGTATAAT
1 --ATGTATAAT
18586877 TACACCAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
29 7 0.19
30 3 0.08
31 17 0.47
32 2 0.06
33 7 0.19
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.41
Consensus pattern (29 bp):
ATGTATAATAAAATTAAAATTAAAATTTC
Found at i:18598050 original size:8 final size:8
Alignment explanation
Indices: 18598037--18598076 Score: 80
Period size: 8 Copynumber: 5.0 Consensus size: 8
18598027 TTTTAAATTG
18598037 AATAAAAT
1 AATAAAAT
18598045 AATAAAAT
1 AATAAAAT
18598053 AATAAAAT
1 AATAAAAT
18598061 AATAAAAT
1 AATAAAAT
18598069 AATAAAAT
1 AATAAAAT
18598077 GAACATTAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (8 bp):
AATAAAAT
Done.