Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 62 of 362
Found at i:18906821 original size:26 final size:26
Alignment explanation
Indices: 18906785--18906894 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
18906775 TGATACAAAT
18906785 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
18906811 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
18906837 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
18906863 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
18906889 TGATAA
1 TGATAA
18906895 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:18908968 original size:137 final size:137
Alignment explanation
Indices: 18908683--18908969 Score: 484
Period size: 137 Copynumber: 2.1 Consensus size: 137
18908673 GAGTAGTCTC
*
18908683 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCTTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
18908748 TGTTATCTAAATATGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAATACC
66 TGTTATCTAAATAAGGGGCTAAGGCCCAATTTATTGTAATCTGAAAAGGGCTCTGGCCCAATACC
18908813 ACTGTTA
131 ACTGTTA
*
18908820 CCCAAAAGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* * *
18908885 TGTTATCTGAATAAGGGGCTAAGGCGCAATTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTAAATAAGGGGCTAAGGCCCAATTTATTGTAATCTGAAAAGGGCTCTGGCCCAATACC
*
18908950 ACTTTTA
131 ACTGTTA
**
18908957 CCTGAATGGGCTT
1 CCCAAATGGGCTT
18908970 AGGCCCAATA
Statistics
Matches: 139, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
137 139 1.00
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTAAATAAGGGGCTAAGGCCCAATTTATTGTAATCTGAAAAGGGCTCTGGCCCAATACC
ACTGTTA
Found at i:18912722 original size:26 final size:26
Alignment explanation
Indices: 18912686--18912769 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
18912676 TGATACAAAT
18912686 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
18912712 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
18912738 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
18912764 TGATAA
1 TGATAA
18912770 GAATTTCATG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:18915654 original size:47 final size:47
Alignment explanation
Indices: 18915603--18916129 Score: 847
Period size: 47 Copynumber: 11.2 Consensus size: 47
18915593 AGGTGTGTAA
* *
18915603 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
*
18915650 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTGTAT
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * *
18915697 ATGTGATAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
*
18915744 ATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* *
18915791 ATGTGATAAGGCCGAATGGCCAATATGATGAATGTGAAAGTGTGTAT
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * *
18915838 ATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
18915885 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* *
18915932 ATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
*
18915979 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * * * * *
18916026 ATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTATAT
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* *
18916073 ATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATAA
1 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
18916120 ATGTGATAAG
1 ATGTGATAAG
18916130 TCCCGAAGGG
Statistics
Matches: 442, Mismatches: 38, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 442 1.00
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
Found at i:18920257 original size:8 final size:8
Alignment explanation
Indices: 18920244--18920269 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
18920234 ATTTTGAAAA
18920244 ATTCAATT
1 ATTCAATT
18920252 ATTCAATT
1 ATTCAATT
18920260 ATTCAATT
1 ATTCAATT
18920268 AT
1 AT
18920270 ATAACTATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (8 bp):
ATTCAATT
Found at i:18920982 original size:2 final size:2
Alignment explanation
Indices: 18920977--18921003 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
18920967 CCCTTCTCTT
18920977 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
18921004 TCTTAATAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:18925073 original size:10 final size:10
Alignment explanation
Indices: 18925058--18925082 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
18925048 ATCAATTTGA
18925058 TAATGGTATG
1 TAATGGTATG
18925068 TAATGGTATG
1 TAATGGTATG
18925078 TAATG
1 TAATG
18925083 ACATGAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.28, T:0.40
Consensus pattern (10 bp):
TAATGGTATG
Found at i:18925295 original size:26 final size:26
Alignment explanation
Indices: 18925265--18925316 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
18925255 GCTTTCGGAG
18925265 AATGAACTTGGACCTCGGATTATTAT
1 AATGAACTTGGACCTCGGATTATTAT
18925291 AATGAACTTGGACCTCGGATTATTAT
1 AATGAACTTGGACCTCGGATTATTAT
18925317 TTTTTAATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (26 bp):
AATGAACTTGGACCTCGGATTATTAT
Found at i:18928995 original size:26 final size:26
Alignment explanation
Indices: 18928958--18929041 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
18928948 TGATACAAAT
* *
18928958 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
18928984 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
18929010 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
18929036 TGATAA
1 TGATAA
18929042 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:18931075 original size:137 final size:137
Alignment explanation
Indices: 18930826--18931112 Score: 504
Period size: 137 Copynumber: 2.1 Consensus size: 137
18930816 GAGTAGTCTC
*
18930826 CCCAAATAGGCTTGCATATGTTTACTGATGTTACATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTACATGTATTTTGAAATGGGCCTATGGGCCATAC
18930891 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTAAAAAGGGCTCTGGTCC-AGTAC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTAAAAAGGGCTCTGG-CCTAGTAC
18930955 CACTGTTA
130 CACTGTTA
*
18930963 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTACATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
18931028 TGTTATCTGAATAAGGGGCTAGGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCTAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTAAAAAGGGCTCTGGCCTAGTACC
18931093 ACTGTTA
131 ACTGTTA
**
18931100 CCTGAATGGGCTT
1 CCCAAATGGGCTT
18931113 AGGCCCAATG
Statistics
Matches: 143, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
136 2 0.01
137 141 0.99
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTACATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTAAAAAGGGCTCTGGCCTAGTACC
ACTGTTA
Found at i:18935839 original size:26 final size:26
Alignment explanation
Indices: 18935802--18935885 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
18935792 TGATACAAAT
* *
18935802 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
18935828 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
18935854 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
18935880 TGATAA
1 TGATAA
18935886 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:18937911 original size:137 final size:137
Alignment explanation
Indices: 18937665--18937940 Score: 491
Period size: 137 Copynumber: 2.0 Consensus size: 137
18937655 GAGTAGTCTC
* * *
18937665 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGGAATGGGCCTATGGGCTATAC
1 CCCAAATGGGCTTGCATATGCTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
18937730 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTGTTGTAATCTGAAAAGGGCTCTGGTCC-AGTAC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGG-CCTAGTAC
18937794 CACTGTTA
130 CACTGTTA
18937802 CCCAAATGGGCTTGCATATGCTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGCTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
18937867 TGTTATCTGAATAAGGTGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCTAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCTAGTACC
18937932 ACTGTTA
131 ACTGTTA
18937939 CC
1 CC
18937941 TGAATGAGAT
Statistics
Matches: 133, Mismatches: 5, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
136 2 0.02
137 131 0.98
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGCTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCTAGTACC
ACTGTTA
Found at i:18939813 original size:24 final size:24
Alignment explanation
Indices: 18939759--18939828 Score: 65
Period size: 24 Copynumber: 2.9 Consensus size: 24
18939749 TATATATATA
18939759 ATTTAT-TTATT-TTAAAAAAACT
1 ATTTATATTATTATTAAAAAAACT
* *
18939781 ATACATATATTATTATTAAAAATACT
1 AT--TTATATTATTATTAAAAAAACT
18939807 ATTTATATGT-TTATATAAAAAA
1 ATTTATAT-TATTAT-TAAAAAA
18939829 TTTTATTTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
22 2 0.05
24 12 0.32
25 12 0.32
26 12 0.32
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.46
Consensus pattern (24 bp):
ATTTATATTATTATTAAAAAAACT
Found at i:18952514 original size:206 final size:206
Alignment explanation
Indices: 18952152--18952873 Score: 1047
Period size: 206 Copynumber: 3.5 Consensus size: 206
18952142 GCAGATCTAG
* *
18952152 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGATTTGGCATCCTTGTGCTTACAAAGAGCAAATCGAAGACATAGCT
* * * *
18952217 GATTTGG-TTTC-CGCATGCTTACACTAAAGCAAATCTAAGATGATTTGGTATCTCTGTATTGTT
65 GATTTGGCTTTCACG-A-GCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTC
* * *
18952280 AGAGAATAGATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGTAGACACATAGCAGATCCAACC
128 AGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCCAACC
18952345 TTCAGATGTTTATA
193 TTCAGATGTTTATA
* * * *
18952359 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAAGAGAAAATCGAAGACTTAGCTG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAAGAGCAAATCGAAGACATAGCTG
* *
18952424 ATTTGGCTTTCACGAGCTTATGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGAGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
18952489 GAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCCAACCTTC
131 GAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCCAACCTTC
18952554 AGATGTTTATA
196 AGATGTTTATA
* * * *
18952565 CTGAAGCAGATCCAAAATGATTTGGTATCCTTGTGCTTACAAGGACCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAAGAGCAAATCGAAGACATAGCTG
* * * *
18952630 ATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTAATGTCAAA
66 ATTTGGCTTTCACGAGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * * * *
18952695 GAACAAATCAAAGTTTGGCGTTTCCATATTCGACAGAGAGCAGACACATAGCAGATCTAACTTTC
131 GAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCCAACCTTC
* * *
18952760 AGACGATTAGA
196 AGATGTTTATA
* *
18952771 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTG-GT-CATAAGAAGCAAATCGAAGACATAAC
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACA-AAG-AGCAAATCGAAGACATAGC
* * *
18952834 AGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAG
64 TGATTTGGCTTTCACGAGCTTACGCTGAAGCAAATCTAAG
18952874 CATCTCTGTA
Statistics
Matches: 471, Mismatches: 40, Indels: 9
0.91 0.08 0.02
Matches are distributed among these distances:
204 2 0.00
205 3 0.01
206 452 0.96
207 12 0.03
208 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (206 bp):
CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAAGAGCAAATCGAAGACATAGCTG
ATTTGGCTTTCACGAGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCCAACCTTC
AGATGTTTATA
Found at i:18954571 original size:21 final size:21
Alignment explanation
Indices: 18954547--18954633 Score: 61
Period size: 21 Copynumber: 4.0 Consensus size: 21
18954537 TTTATATAAA
*
18954547 ATTTT-TTATTTATCATATATT
1 ATTTTATTATATAT-ATATATT
** *
18954568 ATTTTCCTATATATTTATATT
1 ATTTTATTATATATATATATT
* *
18954589 ATATTTAATTATATAACATTTATT
1 AT-TTT-ATTATAT-ATATATATT
*
18954613 ATATT-TTATATATATATATT
1 ATTTTATTATATATATATATT
18954633 A
1 A
18954634 CTTATCTTTT
Statistics
Matches: 51, Mismatches: 11, Indels: 9
0.72 0.15 0.13
Matches are distributed among these distances:
20 8 0.16
21 19 0.37
22 9 0.18
23 7 0.14
24 8 0.16
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTTTATTATATATATATATT
Found at i:18955186 original size:16 final size:17
Alignment explanation
Indices: 18955161--18955197 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
18955151 ATGTACATTG
18955161 ATATTATATT-ATTT-T
1 ATATTATATTAATTTGT
18955176 ATATATATATTAATTTGT
1 ATAT-TATATTAATTTGT
18955194 ATAT
1 ATAT
18955198 CATGCATCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 4 0.21
16 6 0.32
17 4 0.21
18 5 0.26
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (17 bp):
ATATTATATTAATTTGT
Found at i:18960358 original size:53 final size:54
Alignment explanation
Indices: 18960290--18960497 Score: 258
Period size: 53 Copynumber: 3.9 Consensus size: 54
18960280 TTTCCTTTTT
* * * *
18960290 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* **
18960343 GAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATA
1 GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATA
* * * * *
18960397 GTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATA
1 G-AACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* *
18960452 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTT
18960498 ATCTTACCAA
Statistics
Matches: 134, Mismatches: 17, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
52 2 0.01
53 45 0.34
54 42 0.31
55 43 0.32
56 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
Found at i:18960485 original size:54 final size:54
Alignment explanation
Indices: 18960290--18960503 Score: 252
Period size: 54 Copynumber: 4.0 Consensus size: 54
18960280 TTTCCTTTTT
* * * * *
18960290 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATA
* ** *
18960343 GAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATA
1 GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCC-TTACCTTATA
* * * *
18960397 GTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATA
1 G-AACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATA
* * *
18960452 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTA
1 GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTA
18960504 CCAAATGTCA
Statistics
Matches: 139, Mismatches: 18, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
52 2 0.01
53 45 0.32
54 47 0.34
55 43 0.31
56 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (54 bp):
GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATA
Found at i:18967051 original size:55 final size:53
Alignment explanation
Indices: 18966960--18967130 Score: 179
Period size: 55 Copynumber: 3.2 Consensus size: 53
18966950 GTCTTGACAA
* * *
18966960 GGTCTTACGTGG-TATTTGCCTTAT-GAACTCACCAATGCCATGCCTTGGCAT
1 GGTCTTACATGGACATTTGCCTTATAGAACTCATCAATGCCATGCCTTGGCAT
* * *
18967011 AGTCTTACATGGGACATTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACAT
1 GGTCTTACAT-GGACATTTGCCTTATAG-AACTCATCAATGCCATGCCTTGGCAT
** * *
18967066 GGTCTTGA-AT-GATTTCCTTACCTTATAGAACTTATCAATGCCATGCCTTGGCAT
1 GGTCTT-ACATGGACAT--TTGCCTTATAGAACTCATCAATGCCATGCCTTGGCAT
18967120 GGTCTTACATG
1 GGTCTTACATG
18967131 ATATCCTTAT
Statistics
Matches: 98, Mismatches: 13, Indels: 14
0.78 0.10 0.11
Matches are distributed among these distances:
51 8 0.08
52 2 0.02
53 15 0.15
54 32 0.33
55 40 0.41
56 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (53 bp):
GGTCTTACATGGACATTTGCCTTATAGAACTCATCAATGCCATGCCTTGGCAT
Found at i:18967121 original size:54 final size:55
Alignment explanation
Indices: 18966952--18967144 Score: 177
Period size: 54 Copynumber: 3.6 Consensus size: 55
18966942 ATTTCGATGT
* * * * *
18966952 CTTGACAAGGTCTTACGTGGTAT--TTGCCTTAT-G-AACTCACCAATGCCATGC
1 CTTGACATGGTCTTACATGATATCCTTACCTTATAGTAACTCATCAATGCCATGC
* * * * *
18967003 CTTGGCATAGTCTTACATGGGACAT--TTGCCTTATAGTAACTCATCAATGCCATGT
1 CTTGACATGGTCTTACAT--GATATCCTTACCTTATAGTAACTCATCAATGCCATGC
* *
18967058 CTTGACATGGTCTTGA-ATGATTTCCTTACCTTATAG-AACTTATCAATGCCATGC
1 CTTGACATGGTCTT-ACATGATATCCTTACCTTATAGTAACTCATCAATGCCATGC
* *
18967112 CTTGGCATGGTCTTACATGATATCCTTATCTTA
1 CTTGACATGGTCTTACATGATATCCTTACCTTA
18967145 CCAAATGCCA
Statistics
Matches: 116, Mismatches: 18, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
51 14 0.12
53 16 0.14
54 45 0.39
55 40 0.34
56 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.36
Consensus pattern (55 bp):
CTTGACATGGTCTTACATGATATCCTTACCTTATAGTAACTCATCAATGCCATGC
Found at i:18967176 original size:47 final size:47
Alignment explanation
Indices: 18967121--18967238 Score: 200
Period size: 47 Copynumber: 2.5 Consensus size: 47
18967111 CCTTGGCATG
* *
18967121 GTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAACATA
1 GTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAACATA
* *
18967168 GTCTTACATGGTATCCTTGTCTTACTAAATGCCATGTTCCAAACATG
1 GTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAACATA
18967215 GTCTTACATGGTATCCTTGTCTTA
1 GTCTTACATGGTATCCTTGTCTTA
18967239 GTGTCAATGC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (47 bp):
GTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAACATA
Found at i:18970474 original size:34 final size:34
Alignment explanation
Indices: 18970422--18970489 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
18970412 ATAGTCAAAT
*
18970422 GCAGTTTGGGCCTAAGCCCATTTCAGTTTCAGTA
1 GCAGTTTGAGCCTAAGCCCATTTCAGTTTCAGTA
*
18970456 GCAGTTTGAGCCTTAGCCCATTTCAGTTTCAGTA
1 GCAGTTTGAGCCTAAGCCCATTTCAGTTTCAGTA
18970490 TTAGATATAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.34
Consensus pattern (34 bp):
GCAGTTTGAGCCTAAGCCCATTTCAGTTTCAGTA
Found at i:18971990 original size:29 final size:28
Alignment explanation
Indices: 18971945--18972061 Score: 126
Period size: 29 Copynumber: 4.0 Consensus size: 28
18971935 TTGCCCATCT
18971945 CATTCATATGGCCCATCAGGCCCAATTCA
1 CATTCATATGG-CCATCAGGCCCAATTCA
18971974 CATTCATATGGCTCATCAGGCCCAATTCA
1 CATTCATATGGC-CATCAGGCCCAATTCA
* * *
18972003 TATTCATATGGCCTATTAGGCCCAAATCA
1 CATTCATATGGCC-ATCAGGCCCAATTCA
* * * * *
18972032 CCTTTATATGGTCCGTTAGGCCCAAATCA
1 CATTCATATGG-CCATCAGGCCCAATTCA
18972061 C
1 C
18972062 CTTATATTAA
Statistics
Matches: 78, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
28 2 0.03
29 74 0.95
30 2 0.03
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (28 bp):
CATTCATATGGCCATCAGGCCCAATTCA
Found at i:18978093 original size:14 final size:15
Alignment explanation
Indices: 18978074--18978102 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
18978064 CCAAATTACA
18978074 TCTAAATAA-ACCAT
1 TCTAAATAACACCAT
18978088 TCTAAATAACACCAT
1 TCTAAATAACACCAT
18978103 AAATCATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (15 bp):
TCTAAATAACACCAT
Found at i:18982710 original size:19 final size:19
Alignment explanation
Indices: 18982686--18982723 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
18982676 AAATTAGGTG
18982686 TGTGAC-ACTAACCCAAAAA
1 TGTGACTAC-AACCCAAAAA
*
18982705 TGTGACTACAACTCAAAAA
1 TGTGACTACAACCCAAAAA
18982724 AACATGAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.88
20 2 0.12
ACGTcount: A:0.47, C:0.24, G:0.11, T:0.18
Consensus pattern (19 bp):
TGTGACTACAACCCAAAAA
Found at i:18982799 original size:16 final size:15
Alignment explanation
Indices: 18982773--18982804 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
18982763 CACATGGCCA
18982773 TGTGGCGGTCGTGTG
1 TGTGGCGGTCGTGTG
18982788 TGTGGTCGGTCGTGTG
1 TGTGG-CGGTCGTGTG
18982804 T
1 T
18982805 AGCAAACGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.00, C:0.12, G:0.50, T:0.38
Consensus pattern (15 bp):
TGTGGCGGTCGTGTG
Found at i:18984606 original size:23 final size:22
Alignment explanation
Indices: 18984538--18984623 Score: 66
Period size: 21 Copynumber: 3.6 Consensus size: 22
18984528 TGATATATGT
* * *
18984538 TAAAATATATATTAATATGATAA
1 TAAAATATATAATAA-ATAATTA
*
18984561 TAGAAAGATATGAAGTAATATAATATCA
1 TA-AAATATAT-AA-TAA-ATAAT-T-A
18984589 TAAAATATA-AATAAATAATTA
1 TAAAATATATAATAAATAATTA
18984610 TAAAATATATAATA
1 TAAAATATATAATA
18984624 CGTATATTCA
Statistics
Matches: 52, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
21 10 0.19
22 5 0.10
23 7 0.13
24 10 0.19
25 3 0.06
26 8 0.15
27 6 0.12
28 3 0.06
ACGTcount: A:0.59, C:0.01, G:0.06, T:0.34
Consensus pattern (22 bp):
TAAAATATATAATAAATAATTA
Found at i:18987307 original size:29 final size:29
Alignment explanation
Indices: 18987275--18987330 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
18987265 AAGTCTAAAA
*
18987275 AAAGAAAGGCTCATAATATCTCTCTAATT
1 AAAGAAAGACTCATAATATCTCTCTAATT
* * *
18987304 AAAGAAAGATTCCTAATATTTCTCTAA
1 AAAGAAAGACTCATAATATCTCTCTAA
18987331 AATATTTTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (29 bp):
AAAGAAAGACTCATAATATCTCTCTAATT
Found at i:18989559 original size:6 final size:6
Alignment explanation
Indices: 18989537--18989586 Score: 73
Period size: 6 Copynumber: 8.0 Consensus size: 6
18989527 TAATTTAGTC
*
18989537 ATTTTT ATTTTAAT ATTTTT ATTTTT ATTTTT ATTTTT AATTTT ATTTTT
1 ATTTTT ATTTT--T ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
18989587 GTTTAATTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
6 34 0.85
8 6 0.15
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (6 bp):
ATTTTT
Found at i:18992006 original size:40 final size:40
Alignment explanation
Indices: 18991935--18992145 Score: 248
Period size: 40 Copynumber: 5.3 Consensus size: 40
18991925 TTCTTCGAAT
* * * * *
18991935 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGTC
* * * * *
18991974 TTAACCCGGGT-ATAGCAACTCGCATAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAATC-ACTAGCATAAATGCCTTCGGGTC
* * *
18992014 TTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAATC-ACTAGCATAAATGCCTTCGGGTC
*
18992054 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGTC
*
18992094 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGTC
18992134 TTAGCCCGGATA
1 TTAGCCCGGATA
18992146 TCATTCAAAT
Statistics
Matches: 152, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 5 0.03
40 143 0.94
41 4 0.03
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGTC
Found at i:18994251 original size:41 final size:41
Alignment explanation
Indices: 18994194--18994277 Score: 141
Period size: 41 Copynumber: 2.0 Consensus size: 41
18994184 CTGAAATTGT
*
18994194 GTCTGTGTGCTTCAACCCTTAACTAAACTTTAGTAAGGGTA
1 GTCTGTGTGCTTCAACCCTTAACTAAACTTTAGTAAGGATA
* *
18994235 GTCTGTGTGCTTCAACCCTTGACTAAGCTTTAGTAAGGATA
1 GTCTGTGTGCTTCAACCCTTAACTAAACTTTAGTAAGGATA
18994276 GT
1 GT
18994278 TAAGACTCTG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (41 bp):
GTCTGTGTGCTTCAACCCTTAACTAAACTTTAGTAAGGATA
Found at i:18998330 original size:30 final size:30
Alignment explanation
Indices: 18998300--18998426 Score: 121
Period size: 30 Copynumber: 4.2 Consensus size: 30
18998290 ATGACTTGGG
* *
18998300 CACATGACTGTGTGGGACACACAACCTGGG
1 CACATGACTGTGTGGGACACACGACCTGGA
* * * *
18998330 CACTTGGCTATGTGGGACACACGGCCTGGA
1 CACATGACTGTGTGGGACACACGACCTGGA
* * **
18998360 CACA-CAGCCGTGTGGGACGTACGACCTGGA
1 CACATGA-CTGTGTGGGACACACGACCTGGA
** *
18998390 CACATGACTGTGTGGGATGCACGGCCTGGA
1 CACATGACTGTGTGGGACACACGACCTGGA
18998420 CACATGA
1 CACATGA
18998427 TCATGTGGTA
Statistics
Matches: 76, Mismatches: 19, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
30 75 0.99
31 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.32, T:0.17
Consensus pattern (30 bp):
CACATGACTGTGTGGGACACACGACCTGGA
Found at i:18998794 original size:31 final size:31
Alignment explanation
Indices: 18998759--18998822 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
18998749 TAATTTTTAC
*
18998759 TTTTACTTTTACTTTTGTTTTTGTTTTTGTT
1 TTTTACTTTTACTTTTGTTTTTGCTTTTGTT
* **
18998790 TTTTATTTTTGTTTTTGTTTTTGCTTTTGTT
1 TTTTACTTTTACTTTTGTTTTTGCTTTTGTT
18998821 TT
1 TT
18998823 GTTTTTGTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.05, C:0.05, G:0.11, T:0.80
Consensus pattern (31 bp):
TTTTACTTTTACTTTTGTTTTTGCTTTTGTT
Found at i:18998847 original size:6 final size:6
Alignment explanation
Indices: 18998771--18998840 Score: 106
Period size: 6 Copynumber: 11.7 Consensus size: 6
18998761 TTACTTTTAC
* *
18998771 TTTTGT TTTTGT TTTTGTT TTTTAT TTTTGT TTTTGT TTTTGC TTTTG-
1 TTTTGT TTTTGT TTTTG-T TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT
18998819 TTTTGT TTTTGT TTTTGT TTTT
1 TTTTGT TTTTGT TTTTGT TTTT
18998841 TCTTTTTTTA
Statistics
Matches: 59, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
5 5 0.08
6 49 0.83
7 5 0.08
ACGTcount: A:0.01, C:0.01, G:0.14, T:0.83
Consensus pattern (6 bp):
TTTTGT
Found at i:19001417 original size:19 final size:19
Alignment explanation
Indices: 19001379--19001417 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
19001369 AATTTAGCCC
* **
19001379 TATATTTATTTTTTTTATA
1 TATATATATTTTTTACATA
19001398 TATATATATTTTTTACATA
1 TATATATATTTTTTACATA
19001417 T
1 T
19001418 TGTTATTTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (19 bp):
TATATATATTTTTTACATA
Found at i:19001428 original size:19 final size:17
Alignment explanation
Indices: 19001380--19001429 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
19001370 ATTTAGCCCT
*
19001380 ATATTTATTTTTTTTAT
1 ATATTTATTTTTTTTAC
* *
19001397 ATATATATATTTTTTAC
1 ATATTTATTTTTTTTAC
19001414 ATATTGTTATTTTTTT
1 ATA-T-TTATTTTTTT
19001430 ATATTTTTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 17 0.65
18 1 0.04
19 8 0.31
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (17 bp):
ATATTTATTTTTTTTAC
Found at i:19001546 original size:14 final size:15
Alignment explanation
Indices: 19001512--19001550 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
19001502 TTTCACAAAT
19001512 TATTATTATTGTTTTA
1 TATTATTA-TGTTTTA
*
19001528 CATTATTAT-TTTTA
1 TATTATTATGTTTTA
19001542 TATTATTAT
1 TATTATTAT
19001551 ATCTTACTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 13 0.62
15 1 0.05
16 7 0.33
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (15 bp):
TATTATTATGTTTTA
Found at i:19001999 original size:22 final size:21
Alignment explanation
Indices: 19001947--19002000 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
19001937 AAACAATATA
*
19001947 TTTTATATA-ATTATTATTAT
1 TTTTATATATTTTATTATTAT
* *
19001967 TTTATAAATATTTTGTTATTAT
1 TTT-TATATATTTTATTATTAT
19001989 GTTTTATATATT
1 -TTTTATATATT
19002001 GTATAGCAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
20 3 0.11
21 5 0.19
22 16 0.59
23 3 0.11
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (21 bp):
TTTTATATATTTTATTATTAT
Found at i:19002256 original size:33 final size:32
Alignment explanation
Indices: 19002187--19002261 Score: 102
Period size: 30 Copynumber: 2.4 Consensus size: 32
19002177 ATTGATATTG
*
19002187 TATTATT-CTTTTTTGGTATGTCATGCATTAT
1 TATTATTACTTTTTTGGTATATCATGCATTAT
19002218 T-TTATTACTTTTTT-GTATATCATGCATTATT
1 TATTATTACTTTTTTGGTATATCATGCATTA-T
19002249 TAATTATTACTTT
1 T-ATTATTACTTT
19002262 GTATGTTTGT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
30 19 0.49
31 10 0.26
33 10 0.26
ACGTcount: A:0.23, C:0.09, G:0.08, T:0.60
Consensus pattern (32 bp):
TATTATTACTTTTTTGGTATATCATGCATTAT
Found at i:19005806 original size:15 final size:15
Alignment explanation
Indices: 19005770--19005819 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
19005760 CGATATCCTT
19005770 TTTGCAT-TCATGCA
1 TTTGCATCTCATGCA
19005784 TTTGCATCTCATAGCA
1 TTTGCATCTCAT-GCA
*
19005800 TTT-CATCACAT-CA
1 TTTGCATCTCATGCA
19005813 TTTGCAT
1 TTTGCAT
19005820 TTAAAGTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.31
15 11 0.34
16 6 0.19
ACGTcount: A:0.24, C:0.24, G:0.10, T:0.42
Consensus pattern (15 bp):
TTTGCATCTCATGCA
Found at i:19008826 original size:27 final size:27
Alignment explanation
Indices: 19008786--19008926 Score: 164
Period size: 27 Copynumber: 5.2 Consensus size: 27
19008776 AGGAAGCGTC
*
19008786 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
19008813 CTGGTGGCTCTGCCAC-ATATACCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
* *
19008839 CCTGGTGGTTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
* *
19008867 CTGGTGGCTCTACCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
19008894 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
19008921 CTGGTG
1 CTGGTG
19008927 ACTTCATCAC
Statistics
Matches: 96, Mismatches: 11, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
26 11 0.11
27 81 0.84
28 4 0.04
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:19008865 original size:54 final size:54
Alignment explanation
Indices: 19008783--19008926 Score: 227
Period size: 54 Copynumber: 2.7 Consensus size: 54
19008773 TGGAGGAAGC
*
19008783 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATACCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATACCT
* *
19008837 GTCCTGGTGGTTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATACCT
* *
19008891 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
19008927 ACTTCATCAC
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 6 0.07
54 77 0.93
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATACCT
Found at i:19008937 original size:27 final size:26
Alignment explanation
Indices: 19008786--19008944 Score: 91
Period size: 27 Copynumber: 5.9 Consensus size: 26
19008776 AGGAAGCGTC
19008786 CTGGTGGCT-ATGCCACAATTATCTG-AT
1 CTGGTGGCTCAT--CACAA-TATCTGTAT
* *
19008813 CTGGTGGCTC-TGCCACATATACCTGT-C
1 CTGGTGGCTCAT--CACA-ATATCTGTAT
*
19008840 CTGGTGG-TTATGCCACAATTATCTG-AT
1 CTGGTGGCTCAT--CACAA-TATCTGTAT
*
19008867 CTGGTGGCTCTACCACATATATCTGT-T
1 CTGGTGGCTC-ATCACA-ATATCTGTAT
19008894 CTGGTGGCTC-TGCCACAATATCTGTAT
1 CTGGTGGCTCAT--CACAATATCTGTAT
*
19008921 CTGGTGACTTCATCACAATATCTG
1 CTGGTGGC-TCATCACAATATCTG
19008945 GCAGCCTCGC
Statistics
Matches: 108, Mismatches: 9, Indels: 30
0.73 0.06 0.20
Matches are distributed among these distances:
26 10 0.09
27 91 0.84
28 5 0.05
29 2 0.02
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (26 bp):
CTGGTGGCTCATCACAATATCTGTAT
Found at i:19008938 original size:81 final size:79
Alignment explanation
Indices: 19008786--19008944 Score: 189
Period size: 81 Copynumber: 2.0 Consensus size: 79
19008776 AGGAAGCGTC
* *
19008786 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATACCTGTCCTGGTGGTTAT
1 CTGGTGGCTATACCACAATTATCTGATCTGGTGGCTCTGCCACATATACCTGTCCTGGTGCTTAT
19008851 GCCACAATTATCTGAT
66 -CCACAA-TATCTGAT
* * * *
19008867 CTGGTGGCTCTACCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATACCACAAT-TATCTGATCTGGTGGCTCTGCCACATATACCTGT-CCTGGTG-CT
19008930 TCAT-CACAATATCTG
63 T-ATCCACAATATCTG
19008945 GCAGCCTCGC
Statistics
Matches: 68, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
80 15 0.22
81 49 0.72
82 2 0.03
83 2 0.03
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (79 bp):
CTGGTGGCTATACCACAATTATCTGATCTGGTGGCTCTGCCACATATACCTGTCCTGGTGCTTAT
CCACAATATCTGAT
Found at i:19015835 original size:26 final size:26
Alignment explanation
Indices: 19015769--19015907 Score: 192
Period size: 26 Copynumber: 5.2 Consensus size: 26
19015759 AGGAAGCGTC
*
19015769 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAA-TATCTGAT
19015796 CTGGTGGCTCTGCCACATATATCTG-T
1 CTGGTGGCTCTGCCACA-ATATCTGAT
*
19015822 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAA-TATCTGAT
*
19015849 CTGGTGGCTCTG-CACATATATCTGTT
1 CTGGTGGCTCTGCCACA-ATATCTGAT
19015875 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTG-AT
19015902 CTGGTG
1 CTGGTG
19015908 ACTTCATCAC
Statistics
Matches: 101, Mismatches: 5, Indels: 12
0.86 0.04 0.10
Matches are distributed among these distances:
25 1 0.01
26 53 0.52
27 46 0.46
28 1 0.01
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATATCTGAT
Found at i:19015849 original size:53 final size:53
Alignment explanation
Indices: 19015769--19015907 Score: 237
Period size: 53 Copynumber: 2.6 Consensus size: 53
19015759 AGGAAGCGTC
19015769 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTG-T
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTG-CACATATATCTGTT
19015822 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCACATATATCTGTT
*
19015875 CTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
19015908 ACTTCATCAC
Statistics
Matches: 83, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
52 18 0.22
53 65 0.78
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCACATATATCTGTT
Found at i:19015918 original size:27 final size:26
Alignment explanation
Indices: 19015769--19015925 Score: 155
Period size: 27 Copynumber: 5.9 Consensus size: 26
19015759 AGGAAGCGTC
*
19015769 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTG-CACAA-TATCTGTAT
19015796 CTGGTGGCTCTGCCACATATATCTG--T
1 CTGGTGGCTCTG-CACA-ATATCTGTAT
*
19015822 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTG-CACAA-TATCTGTAT
19015849 CTGGTGGCTCTGCACATATATCTGT-T
1 CTGGTGGCTCTGCACA-ATATCTGTAT
19015875 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTG-CACAATATCTGTAT
*
19015902 CTGGTGACTTCAT-CACAATATCTG
1 CTGGTGGC-TC-TGCACAATATCTG
19015926 GCAGCCTCGC
Statistics
Matches: 117, Mismatches: 4, Indels: 18
0.84 0.03 0.13
Matches are distributed among these distances:
25 1 0.01
26 54 0.46
27 58 0.50
28 3 0.03
29 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (26 bp):
CTGGTGGCTCTGCACAATATCTGTAT
Found at i:19019269 original size:25 final size:23
Alignment explanation
Indices: 19019217--19019271 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
19019207 TATAAGTAGT
19019217 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
19019240 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
19019265 AATAGTG
1 AATAGTG
19019272 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:19019385 original size:21 final size:21
Alignment explanation
Indices: 19019361--19019400 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
19019351 ATAGTGTAAA
*
19019361 AAATACATACATAATATAATT
1 AAATACATACATAAGATAATT
*
19019382 AAATATATACATAAGATAA
1 AAATACATACATAAGATAA
19019401 CATGTAGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.60, C:0.07, G:0.03, T:0.30
Consensus pattern (21 bp):
AAATACATACATAAGATAATT
Found at i:19019391 original size:25 final size:25
Alignment explanation
Indices: 19019333--19019394 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
19019323 ATAGATATAA
** *
19019333 AAAAAATATGTACATAATATAGTGT
1 AAAAAATACATACATAATATAATGT
19019358 AAAAAATACATACATAATATAAT-T
1 AAAAAATACATACATAATATAATGT
*
19019382 AAATATATACATA
1 AAA-AAATACATA
19019395 AGATAACATG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 4 0.12
25 28 0.88
ACGTcount: A:0.58, C:0.06, G:0.05, T:0.31
Consensus pattern (25 bp):
AAAAAATACATACATAATATAATGT
Found at i:19019415 original size:29 final size:29
Alignment explanation
Indices: 19019382--19019454 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
19019372 TAATATAATT
19019382 AAATATATACATAAGATAACAT-GTAGAAA
1 AAATATATACATAA-ATAACATAGTAGAAA
* * **
19019411 AAATATATATATAAATAATATAGTATTAA
1 AAATATATACATAAATAACATAGTAGAAA
*
19019440 AGATATATACATAAA
1 AAATATATACATAAA
19019455 ATAGTATAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
28 6 0.16
29 31 0.84
ACGTcount: A:0.59, C:0.04, G:0.07, T:0.30
Consensus pattern (29 bp):
AAATATATACATAAATAACATAGTAGAAA
Found at i:19019445 original size:25 final size:24
Alignment explanation
Indices: 19019419--19019547 Score: 99
Period size: 25 Copynumber: 5.5 Consensus size: 24
19019409 AAAAATATAT
*
19019419 ATATAAATAATATAGTATTAAAGA
1 ATATACATAATATAGTATTAAAGA
* *
19019443 TATATACATAAAATAGTA-TAATATA
1 -ATATACATAATATAGTATTAA-AGA
* * *
19019468 TATATACGTAATATAGAATT-TAGA
1 -ATATACATAATATAGTATTAAAGA
* *
19019492 ATATACCTAATATA-T-TAAAAGA
1 ATATACATAATATAGTATTAAAGA
* *
19019514 ATATATATAATATAATATTAAA-A
1 ATATACATAATATAGTATTAAAGA
19019537 ATATA-ATAATA
1 ATATACATAATA
19019548 ACAAAAAAAG
Statistics
Matches: 84, Mismatches: 15, Indels: 13
0.75 0.13 0.12
Matches are distributed among these distances:
21 1 0.01
22 21 0.25
23 20 0.24
24 9 0.11
25 32 0.38
26 1 0.01
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (24 bp):
ATATACATAATATAGTATTAAAGA
Found at i:19019469 original size:50 final size:48
Alignment explanation
Indices: 19019410--19019531 Score: 127
Period size: 50 Copynumber: 2.5 Consensus size: 48
19019400 ACATGTAGAA
*
19019410 AAAATATATATATAAATAATATAGTATTAAAGATATATACATAAAATAGT
1 AAAATATATATATAAATAATATAGAATT-AAGA-ATATACATAAAATAGT
* ** * * * *
19019460 ATAATATATATATACGTAATATAGAATTTAGAATATACCTAATATATT
1 AAAATATATATATAAATAATATAGAATTAAGAATATACATAAAATAGT
*
19019508 AAAAGAATATATATAATATAATAT
1 AAAA-TATATATATAA-ATAATAT
19019532 TAAAAATATA
Statistics
Matches: 58, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
48 16 0.28
49 12 0.21
50 30 0.52
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (48 bp):
AAAATATATATATAAATAATATAGAATTAAGAATATACATAAAATAGT
Found at i:19020064 original size:30 final size:30
Alignment explanation
Indices: 19020027--19020124 Score: 178
Period size: 30 Copynumber: 3.3 Consensus size: 30
19020017 TAGGTACAAG
*
19020027 TGGTGGTGGAACAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
*
19020057 AGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
19020087 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
19020117 TGGTGGTG
1 TGGTGGTG
19020125 CAAAGGCTAG
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 65 1.00
ACGTcount: A:0.17, C:0.06, G:0.50, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:19020085 original size:18 final size:18
Alignment explanation
Indices: 19020062--19020115 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
19020052 GGAGTAGGTG
19020062 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
19020080 GT-G-G--AGT-TGG-TG
1 GTGGAGCAAGTGTGGCTA
19020092 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
19020110 GTGGAG
1 GTGGAG
19020116 TTGGTGGTGC
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 3 0.11
13 4 0.14
14 4 0.14
16 4 0.14
17 4 0.14
18 9 0.32
ACGTcount: A:0.19, C:0.07, G:0.50, T:0.24
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:19020898 original size:88 final size:86
Alignment explanation
Indices: 19020762--19020967 Score: 207
Period size: 87 Copynumber: 2.4 Consensus size: 86
19020752 TCCTGAGCTT
* * * * *
19020762 AACTCATTTCTCGCAATATGAATTGACTCTTTAAAACTAAACATTAAAAATAGAAATCGAAAATA
1 AACTCACTTCTCGCAATATGAGTTGA-TTTTTAAAACAAAACATT-AAAACAGAAATCGAAAATA
* *
19020827 GCTTAGCACGTGAGC-CAAGGCTC
64 CCTCAGCACGTGA-CTCAAGGCTC
** ** * *
19020850 AACTCACTTCTCGCAATATGAGTTGATTTTTAAAACAAAATTTGTAAAACAGATTTTGAATATAC
1 AACTCACTTCTCGCAATATGAGTTGATTTTTAAAACAAAACAT-TAAAACAGAAATCGAAAATAC
* * *
19020915 CTCGGCATGTGACTCGAGGCTC
65 CTCAGCACGTGACTCAAGGCTC
* *
19020937 AACTCACCTCTCGTAATATGAGTTGATTTTT
1 AACTCACTTCTCGCAATATGAGTTGATTTTT
19020968 GCAAAGCATA
Statistics
Matches: 98, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
86 1 0.01
87 72 0.73
88 25 0.26
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (86 bp):
AACTCACTTCTCGCAATATGAGTTGATTTTTAAAACAAAACATTAAAACAGAAATCGAAAATACC
TCAGCACGTGACTCAAGGCTC
Found at i:19021009 original size:18 final size:17
Alignment explanation
Indices: 19020983--19021023 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
19020973 GCATAAATTG
19020983 AAAAA-AAAAATCAAAAT
1 AAAAATAAAAATC-AAAT
*
19021000 AAAAATAAAAATCAACT
1 AAAAATAAAAATCAAAT
19021017 AAAAATA
1 AAAAATA
19021024 CCTCGGCGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (17 bp):
AAAAATAAAAATCAAAT
Found at i:19021202 original size:13 final size:14
Alignment explanation
Indices: 19021170--19021202 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
19021160 TGATTTTTTG
19021170 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
19021184 GAAAAACAGAATTT
1 GAAAAACAAAATTT
19021198 GAAAA
1 GAAAA
19021203 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:19021258 original size:91 final size:88
Alignment explanation
Indices: 19021018--19021367 Score: 407
Period size: 91 Copynumber: 3.9 Consensus size: 88
19021008 AAATCAACTA
* * *
19021018 AAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAC
1 AAAATACCTCAGCGTGT-A--TGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAA
* *
19021083 AAACATAAATTGAAAAAAAAGAAATTG
63 AAACAGAAATTG-AAAAACAGAAATTG
* * * * * *
19021110 AAAATATCTCAGCGTGTCCTGAGGCTGAACTCACCTCTCGTAATATGAGTTGATTTTTTGGAAAA
1 AAAATACCTCAGCGTGT-ATGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAA
*
19021175 ACA-AAATTTGAAAAACAGAATTTG
65 ACAGAAA-TTGAAAAACAGAAATTG
* *
19021199 AAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTGAA
1 AAAATACCTCAGCGTGT-A-T-GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAA
* * *
19021264 ACACAGAAATTGAAGAACAGAAATGG
63 AAACAGAAATTGAAAAACAGAAATTG
* * * *
19021290 AAAACACCTCAGCGTCT-TGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTGAAAG
1 AAAATACCTCAGCGTGTATGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTTTTTTGAAAA
19021354 ACAGAAATTGAAAA
65 ACAGAAATTGAAAA
19021368 TACCTCAACG
Statistics
Matches: 223, Mismatches: 30, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
87 30 0.13
88 25 0.11
89 31 0.14
90 49 0.22
91 70 0.31
92 18 0.08
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.27
Consensus pattern (88 bp):
AAAATACCTCAGCGTGTATGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAAA
CAGAAATTGAAAAACAGAAATTG
Found at i:19021553 original size:75 final size:75
Alignment explanation
Indices: 19021273--19021883 Score: 821
Period size: 73 Copynumber: 8.3 Consensus size: 75
19021263 AACACAGAAA
* * * * *
19021273 TTGAAGAACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
19021336 GCTGATTTTTT
66 GTTGA-TTTTT
*
19021347 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
19021412 GTTGA--TTT
66 GTTGATTTTT
* * * * * *
19021420 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
19021483 GTTGATTTTT
66 GTTGATTTTT
*
19021493 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
19021558 GCTGATTTTT
66 GTTGATTTTT
* *
19021568 TTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
19021633 GTTGA--TTT
66 GTTGATTTTT
* * * * * *
19021641 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
19021706 GTTGATTTTT
66 GTTGATTTTT
* *
19021716 TTGAAAAATAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
19021781 GTTGA--GTT
66 GTTGATTTTT
* * * * * *
19021789 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
19021854 GTTGATTTTT
66 GTTGATTTTT
* * *
19021864 TT-AGAAACATAAATTAAAAA
1 TTGAAAAACAGAAATTGAAAA
19021884 AACGAAAATT
Statistics
Matches: 473, Mismatches: 54, Indels: 20
0.86 0.10 0.04
Matches are distributed among these distances:
71 37 0.08
72 1 0.00
73 182 0.38
74 38 0.08
75 178 0.38
76 37 0.08
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTT
Found at i:19021681 original size:148 final size:148
Alignment explanation
Indices: 19021273--19021950 Score: 830
Period size: 148 Copynumber: 4.5 Consensus size: 148
19021263 AACACAGAAA
* * * * *
19021273 TTGAAGAACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
19021336 GCTGATTTTTTTTGA-AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCT
66 GTTGA---TTTTTGACAA-ACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCT
19021400 CTCGCAATATGAGTTGA--TTT
127 CTCGCAATATGAGTTGATTTTT
* * * * * *
19021420 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * * *
19021483 GTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCT
66 GTTGA--TTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCT
*
19021548 CGCAATATGAGCTGATTTTT
129 CGCAATATGAGTTGATTTTT
* *
19021568 TTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
19021633 GTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCG
66 GTTGATTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
19021698 CAATATGAGTTGATTTTT
131 CAATATGAGTTGATTTTT
* *
19021716 TTGAAAAATAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * * *
19021781 GTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCG
66 GTTGATTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
19021846 CAATATGAGTTGATTTTT
131 CAATATGAGTTGATTTTT
* * *
19021864 TTAGAAACATAAATTAAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCAC
1 TT-G-----------AAAAACA-G-AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAC
19021929 CTCTCGCAATATGAGTTGATTT
52 CTCTCGCAATATGAGTTGATTT
19021951 GAAAAGCAGA
Statistics
Matches: 474, Mismatches: 38, Indels: 23
0.89 0.07 0.04
Matches are distributed among these distances:
146 70 0.15
147 62 0.13
148 238 0.50
149 2 0.00
150 37 0.08
160 6 0.01
161 1 0.00
162 58 0.12
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (148 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTT
Found at i:19021806 original size:221 final size:222
Alignment explanation
Indices: 19021273--19021950 Score: 954
Period size: 221 Copynumber: 3.0 Consensus size: 222
19021263 AACACAGAAA
* * * *
19021273 TTGAAGAACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
19021336 GCTGATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
66 GCTGA--TTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
* *
19021401 TCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC--GTCTTGAGGTTCAA
129 TCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAA
19021464 CTCACCTATCGCAATATGAGTTGATTTTT
194 CTCACCTATCGCAATATGAGTTGATTTTT
19021493 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
19021558 GCTGATTTTTTTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
66 GCTGA-TTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
19021623 CGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAAC
130 CGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAAC
19021688 TCACCTATCGCAATATGAGTTGATTTTT
195 TCACCTATCGCAATATGAGTTGATTTTT
* * *
19021716 TTGAAAAATAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
* * * * * * *
19021781 GTTGA-GTTTTGACAA-ACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCT
66 GCTGATTTTTTGA-AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* *
19021844 CGCAATATGAGTTGATTTTTTTAGAAACATAAATTAAAAAAACGAAAATTGAAAATACCTCAGCG
130 CGCAATATGAGTTGA--TTTTT-G--AC-----------AAACAAAAATTGAAATTACCTCAGCG
*
19021909 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
179 TGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTT
19021951 GAAAAGCAGA
Statistics
Matches: 416, Mismatches: 21, Indels: 25
0.90 0.05 0.05
Matches are distributed among these distances:
220 24 0.06
221 171 0.41
222 41 0.10
223 112 0.27
224 1 0.00
226 2 0.00
237 65 0.16
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (222 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
GCTGATTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
GCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACT
CACCTATCGCAATATGAGTTGATTTTT
Found at i:19022088 original size:14 final size:13
Alignment explanation
Indices: 19022053--19022097 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
19022043 TTGATTTTTG
*
19022053 AAAAATAGAAATT
1 AAAAACAGAAATT
*
19022066 AAAAGCAGAAATT
1 AAAAACAGAAATT
19022079 GAAAAACAGAAATT
1 -AAAAACAGAAATT
19022093 AAAAA
1 AAAAA
19022098 TACCTCGGCG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 16 0.57
14 12 0.43
ACGTcount: A:0.69, C:0.04, G:0.11, T:0.16
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:19022118 original size:100 final size:101
Alignment explanation
Indices: 19021881--19022241 Score: 450
Period size: 100 Copynumber: 3.7 Consensus size: 101
19021871 CATAAATTAA
*
19021881 AAAAAC-GAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAG-AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * *
19021945 TGA--TTTGAAAAGCAGAATTTGTAAGGCAAAAATTG
65 TGATTTTTGAAAAGCAGAAATTGAAAAGCAGAAATTG
19021980 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
**
19022045 GATTTTTGAAAAATAGAAATT-AAAAGCAGAAATTG
66 GATTTTTGAAAAGCAGAAATTGAAAAGCAGAAATTG
* * * *
19022080 AAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
19022145 GATTTTTGAAAAGCATAAATT--------G--A---
66 GATTTTTGAAAAGCAGAAATTGAAAAGCAGAAATTG
* *
19022168 AAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGC--GTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAG
19022233 TTGATTTTT
64 TTGATTTTT
19022242 TTGAAAGATA
Statistics
Matches: 237, Mismatches: 20, Indels: 19
0.86 0.07 0.07
Matches are distributed among these distances:
88 25 0.11
90 41 0.17
91 1 0.00
93 1 0.00
99 64 0.27
100 91 0.38
101 14 0.06
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (101 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAGCAGAAATTGAAAAGCAGAAATTG
Found at i:19022235 original size:90 final size:87
Alignment explanation
Indices: 19022066--19022241 Score: 262
Period size: 90 Copynumber: 2.0 Consensus size: 87
19022056 AATAGAAATT
* * *
19022066 AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTC
1 AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCGGCGTGACCCGAGGCCCAACTCACCTC
19022131 TCGCAATATGAGTTGATTTTTG
66 TCGCAATATGAGTTGATTTTTG
* * * *
19022153 AAAAGCATAAATTGAAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCAC
1 AAAAGCAGAAATTG-AAAAACAGAAATTAAAAATACCTC-G-GCGTGACCCGAGGCCCAACTCAC
19022218 CTCTCGCAATATGAGTTGATTTTT
63 CTCTCGCAATATGAGTTGATTTTT
19022242 TTGAAAGATA
Statistics
Matches: 79, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
87 13 0.16
88 23 0.29
89 1 0.01
90 42 0.53
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.24
Consensus pattern (87 bp):
AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCGGCGTGACCCGAGGCCCAACTCACCTC
TCGCAATATGAGTTGATTTTTG
Found at i:19034369 original size:22 final size:24
Alignment explanation
Indices: 19034311--19034378 Score: 77
Period size: 25 Copynumber: 2.9 Consensus size: 24
19034301 ATAGATATAA
* *
19034311 AAAAATATGTACATAATATAGTGT
1 AAAAATATATACATAATATAATGT
*
19034335 AAAAAATACATACATAATATAAT-T
1 -AAAAATATATACATAATATAATGT
*
19034359 -AAAATATATACATAAGATAA
1 AAAAATATATACATAATATAA
19034379 CATGTAGAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
22 18 0.47
24 1 0.03
25 19 0.50
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.29
Consensus pattern (24 bp):
AAAAATATATACATAATATAATGT
Found at i:19034422 original size:25 final size:24
Alignment explanation
Indices: 19034393--19034523 Score: 85
Period size: 25 Copynumber: 5.5 Consensus size: 24
19034383 TAGAAAAAAA
*
19034393 AATATAAATAATATAGTATTAAAG
1 AATATACATAATATAGTATTAAAG
* *
19034417 ATATATACATAAAATAGTA-TAATAT
1 A-ATATACATAATATAGTATTAA-AG
* * *
19034442 ATATATACGTAATATAGAATT-TAG
1 A-ATATACATAATATAGTATTAAAG
* *
19034466 AATATACCTAATATA-T-TAAAAG
1 AATATACATAATATAGTATTAAAG
* * *
19034488 AATATATATAATATAATGTT-AAG
1 AATATACATAATATAGTATTAAAG
19034511 AAATATA-ATAATA
1 -AATATACATAATA
19034524 CAAAACAAAA
Statistics
Matches: 85, Mismatches: 15, Indels: 15
0.74 0.13 0.13
Matches are distributed among these distances:
21 1 0.01
22 15 0.18
23 23 0.27
24 13 0.15
25 32 0.38
26 1 0.01
ACGTcount: A:0.55, C:0.03, G:0.07, T:0.35
Consensus pattern (24 bp):
AATATACATAATATAGTATTAAAG
Found at i:19034425 original size:77 final size:81
Alignment explanation
Indices: 19034275--19034446 Score: 190
Period size: 77 Copynumber: 2.2 Consensus size: 81
19034265 ATGTTAAGAT
* * * * * * *
19034275 ATATATAATATATACATATGTATAAAATAGATATAAAAAAATATGTACATAATATAGTGTAAAAA
1 ATATAAAATATATACATAAGTATAAAATAGATAGAAAAAAAAATATAAATAATATAGTATAAAAA
*
19034340 ATACATACATAATATA
66 ATACATACATAAAATA
* * *
19034356 AT-TAAAATATATACATAAG-ATAACAT-G-TAGAAAAAAAAATATAAATAATATAGTATTAAAG
1 ATATAAAATATATACATAAGTATAAAATAGATAGAAAAAAAAATATAAATAATATAGTATAAAAA
*
19034417 ATATATACATAAAATA
66 ATACATACATAAAATA
* *
19034433 GTATAATATATATA
1 ATATAAAATATATA
19034447 TACGTAATAT
Statistics
Matches: 76, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
77 42 0.55
78 11 0.14
79 6 0.08
80 15 0.20
81 2 0.03
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.31
Consensus pattern (81 bp):
ATATAAAATATATACATAAGTATAAAATAGATAGAAAAAAAAATATAAATAATATAGTATAAAAA
ATACATACATAAAATA
Found at i:19035042 original size:30 final size:30
Alignment explanation
Indices: 19035006--19035134 Score: 204
Period size: 30 Copynumber: 4.3 Consensus size: 30
19034996 AGGTACAAAT
*
19035006 GGTGGTGGAACAAGTGTGGCTAGTGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
*
19035036 GGTGGTGGAGCAAGTGTGGCTAGTGGTGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
* * *
19035066 AGTGGTGGAGCAAGTGTAGCTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
*
19035096 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
19035126 GGTGGTGGA
1 GGTGGTGGA
19035135 AAAGGCTATG
Statistics
Matches: 91, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 91 1.00
ACGTcount: A:0.19, C:0.06, G:0.49, T:0.26
Consensus pattern (30 bp):
GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
Found at i:19042759 original size:14 final size:14
Alignment explanation
Indices: 19042732--19042782 Score: 57
Period size: 14 Copynumber: 3.5 Consensus size: 14
19042722 AACTTAGCCC
* *
19042732 TATATTTATTTTTT
1 TATATATATATTTT
19042746 TATATATATATTTT
1 TATATATATATTTT
19042760 TATATATTGATATTTT
1 TATATA-T-ATATTTT
*
19042776 TTTATAT
1 TATATAT
19042783 TTTTTTACTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
14 18 0.56
15 2 0.06
16 12 0.38
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (14 bp):
TATATATATATTTT
Found at i:19042783 original size:16 final size:15
Alignment explanation
Indices: 19042732--19042783 Score: 70
Period size: 16 Copynumber: 3.4 Consensus size: 15
19042722 AACTTAGCCC
19042732 TATATT-TATTTTTT
1 TATATTATATTTTTT
*
19042746 TATATATATATTTTTA
1 TATAT-TATATTTTTT
19042762 TATATTGATATTTTTT
1 TATATT-ATATTTTTT
19042778 TATATT
1 TATATT
19042784 TTTTTACTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
14 5 0.15
15 2 0.06
16 26 0.79
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (15 bp):
TATATTATATTTTTT
Found at i:19042838 original size:13 final size:13
Alignment explanation
Indices: 19042822--19042945 Score: 58
Period size: 13 Copynumber: 8.9 Consensus size: 13
19042812 ATAAGATCAT
19042822 TTTATTATTATTA
1 TTTATTATTATTA
*
19042835 TTTATTATATCTTA
1 TTTATTAT-TATTA
* **
19042849 TTTTTTCACAAATTA
1 TTTATT-A-TTATTA
19042864 -TTATTATT-TTA
1 TTTATTATTATTA
* *
19042875 CATTATTATTTTTA
1 -TTTATTATTATTA
19042889 TATTATTATTA-TA
1 T-TTATTATTATTA
19042902 TCTTACTTGTATTATATA
1 T-TTA--T-TATTAT-TA
19042920 TTTATTAATTATTTA
1 TTTATT-ATTA-TTA
19042935 TTTA-TATTATT
1 TTTATTATTATT
19042946 CTTACATATA
Statistics
Matches: 86, Mismatches: 11, Indels: 29
0.68 0.09 0.23
Matches are distributed among these distances:
11 3 0.03
12 2 0.02
13 27 0.31
14 26 0.30
15 16 0.19
16 6 0.07
17 3 0.03
18 3 0.03
ACGTcount: A:0.31, C:0.05, G:0.01, T:0.64
Consensus pattern (13 bp):
TTTATTATTATTA
Found at i:19042893 original size:14 final size:14
Alignment explanation
Indices: 19042862--19042898 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
19042852 TTTCACAAAT
19042862 TATTATTA-TTTTA
1 TATTATTATTTTTA
*
19042875 CATTATTATTTTTA
1 TATTATTATTTTTA
19042889 TATTATTATT
1 TATTATTATT
19042899 ATATCTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 7 0.33
14 14 0.67
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTATTATTTTTA
Found at i:19043085 original size:97 final size:98
Alignment explanation
Indices: 19042975--19043388 Score: 260
Period size: 99 Copynumber: 4.2 Consensus size: 98
19042965 TATTTTATAT
19042975 TATATCTATTATATT-TTTATTTCCTATATATATTTAAATTATATTTTATTATATAACATTTATT
1 TATATC-A-TATATTATTTATTTCCTATATATATTTAAATTATATTTTATTATATAACATTTATT
19043039 GTGTTTTTATTTTTATATTACCTTTTTATGTCATA
64 GTGTTTTTATTTTTATATTACCTTTTTATGTCATA
** ** * * * * * * *
19043074 TATATCATATATTATCAATTATATTATTTATGTTTATATTATTCATTATATTATTTAAAATTT-G
1 TATATCATATATTATTTATT-TCCTATATATATTTAAATTA-T-ATTTTATTATATAACATTTAT
*** * ** * ** **
19043138 TAAATTTGTA-AATTAAATTATATTTTTAACTCATA
63 TGTGTTTTTATTTTTATATTACCTTTTTATGTCATA
* * ** * *
19043173 T-TATACAAATATTAAATTATTTTATATTATATTATTCTTACA-TATATATTTATTA-AT--TAT
1 TATAT-CATATATT-ATTTATTTCCTA-TATA-TA-T-TTAAATTATAT-TTTATTATATAACAT
* * * * *
19043233 TTATT-T-ATATTATTCTTACATATATA-TTTTCGTTAT-TTATA
59 TTATTGTGTTTTTATT-TT-TATAT-TACCTTT--TTATGTCATA
19043274 TTATATCTATTATATT-TTTATTTCCTATATATATTTAAATTATATTTTATTATATAACATTTAT
1 -TATATC-A-TATATTATTTATTTCCTATATATATTTAAATTATATTTTATTATATAACATTTAT
19043338 TGTGTTTTTATTTTTATATTACCTTTTTATGTCATA
63 TGTGTTTTTATTTTTATATTACCTTTTTATGTCATA
19043374 TATATCATATATTAT
1 TATATCATATATTAT
19043389 CAATTATATT
Statistics
Matches: 227, Mismatches: 57, Indels: 63
0.65 0.16 0.18
Matches are distributed among these distances:
97 15 0.07
98 25 0.11
99 70 0.31
100 31 0.14
101 48 0.21
102 19 0.08
103 14 0.06
104 5 0.02
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.58
Consensus pattern (98 bp):
TATATCATATATTATTTATTTCCTATATATATTTAAATTATATTTTATTATATAACATTTATTGT
GTTTTTATTTTTATATTACCTTTTTATGTCATA
Found at i:19043172 original size:99 final size:98
Alignment explanation
Indices: 19043069--19043508 Score: 264
Period size: 99 Copynumber: 4.4 Consensus size: 98
19043059 CCTTTTTATG
*
19043069 TCATATATATCATATATTATCAATTATATTATTTATGTTTATATTATTCATTATATTATTTAAAA
1 TCATATATATCATATATTAT-AATTATATTATTTATATTTATATTATTCATTATATTATTTAAAA
19043134 TTTGTAAATTTGTA-AATTAAATTATATTTTTAAC
65 TTT-TAAATTTGTATAATTAAATTATATTTTTAAC
*
19043168 TCATAT-TATACAAATATTA-AA-T-TA-T-TTTATA-TTATATTATTC-TTACATATATATTTA
1 TCATATATAT-CATATATTATAATTATATTATTTATATTTATATTATTCATT--ATAT-TATTTA
* * * * * * *
19043225 TTAATTATT-TATTTATATTATTCTTACATATATATTTTCGTTAT
62 -AAATT-TTAAATTTGTA-TA--ATTAAAT-TATATTTT--TAAC
* * * ** * * * *
19043269 TTATATTATATCTATTATATTTTTATT-TCCTATATATATTTAAATTA-T-ATTTTATTATATAA
1 TCATA-TATATC-A-TATATTATAATTATATTATTTATATTTATATTATTCATTATATTATTTAA
* *** * ** * ** **
19043331 CATTTATTGTGTTTTTATTTTTATATTACCTTTTTATG
63 -AATT-TTAAATTTGTATAATTAAATTATATTTTTAAC
*
19043369 TCATATATATCATATATTATCAATTATATTATTTATGTTTATATTATTCATTATATTATTTAAAA
1 TCATATATATCATATATTAT-AATTATATTATTTATATTTATATTATTCATTATATTATTTAAAA
19043434 TTTTAAAATTTGTA-AATTAAATTATATTTTTAAC
65 TTTT-AAATTTGTATAATTAAATTATATTTTTAAC
* *
19043468 TCATAT-TATACACATATTA-AATTATTTTATATTATATTTAT
1 TCATATATAT-CATATATTATAATTATATTAT-TTATATTTAT
19043509 TATGTATTAT
Statistics
Matches: 254, Mismatches: 55, Indels: 65
0.68 0.15 0.17
Matches are distributed among these distances:
91 2 0.01
92 11 0.04
93 9 0.04
94 13 0.05
95 7 0.03
96 3 0.01
97 19 0.07
98 24 0.09
99 72 0.28
100 14 0.06
101 18 0.07
102 8 0.03
103 9 0.04
104 5 0.02
105 13 0.05
106 11 0.04
107 1 0.00
108 8 0.03
109 7 0.03
ACGTcount: A:0.36, C:0.06, G:0.02, T:0.56
Consensus pattern (98 bp):
TCATATATATCATATATTATAATTATATTATTTATATTTATATTATTCATTATATTATTTAAAAT
TTTAAATTTGTATAATTAAATTATATTTTTAAC
Found at i:19043197 original size:5 final size:5
Alignment explanation
Indices: 19043181--19043328 Score: 53
Period size: 5 Copynumber: 29.8 Consensus size: 5
19043171 TATTATACAA
* * * *
19043181 ATATT AAATT ATTTT ATATT ATATT ATTCTT ACATAT ATATT -TATT A-ATT
1 ATATT ATATT ATATT ATATT ATATT A-TATT ATAT-T ATATT ATATT ATATT
* * * *
19043231 AT-TT AT-TT ATATT ATTCTT ACATAT ATATT TTCGTT AT-TT ATATT
1 ATATT ATATT ATATT A-TATT ATAT-T ATATT AT-ATT ATATT ATATT
* * *
19043276 ATA-T CTATT ATATT -T-TT AT-TT CCTATAT ATATTT AAATT ATATT
1 ATATT ATATT ATATT ATATT ATATT -ATAT-T ATA-TT ATATT ATATT
*
19043320 TTATT ATAT
1 ATATT ATAT
19043329 AACATTTATT
Statistics
Matches: 105, Mismatches: 23, Indels: 30
0.66 0.15 0.19
Matches are distributed among these distances:
3 2 0.02
4 27 0.26
5 49 0.47
6 25 0.24
7 2 0.02
ACGTcount: A:0.34, C:0.05, G:0.01, T:0.60
Consensus pattern (5 bp):
ATATT
Found at i:19043244 original size:38 final size:41
Alignment explanation
Indices: 19043182--19043261 Score: 139
Period size: 38 Copynumber: 2.0 Consensus size: 41
19043172 ATTATACAAA
19043182 TATTAAATTATTTTATATTATATTATTCTTACATATATATT
1 TATTAAATTATTTTATATTATATTATTCTTACATATATATT
19043223 TATT-AATTA-TTTAT-TTATATTATTCTTACATATATATT
1 TATTAAATTATTTTATATTATATTATTCTTACATATATATT
19043261 T
1 T
19043262 TCGTTATTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
38 25 0.64
39 5 0.13
40 5 0.13
41 4 0.10
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (41 bp):
TATTAAATTATTTTATATTATATTATTCTTACATATATATT
Found at i:19043315 original size:300 final size:301
Alignment explanation
Indices: 19042914--19043505 Score: 1143
Period size: 300 Copynumber: 2.0 Consensus size: 301
19042904 TTACTTGTAT
*
19042914 TATATATTTATTAATTATTTATTTATATTATTCTTACATATATATTTTTGTTATTTTATATTATA
1 TATATATTTATTAATTATTTATTTATATTATTCTTACATATATATTTTCGTTATTTTATATTATA
19042979 TCTATTATATTTTTATTTCCTATATATATTTAAATTATATTTTATTATATAACATTTATTGTGTT
66 TCTATTATATTTTTATTTCCTATATATATTTAAATTATATTTTATTATATAACATTTATTGTGTT
19043044 TTTATTTTTATATTACCTTTTTATGTCATATATATCATATATTATCAATTATATTATTTATGTTT
131 TTTATTTTTATATTACCTTTTTATGTCATATATATCATATATTATCAATTATATTATTTATGTTT
19043109 ATATTATTCATTATATTATTTAAAATTTGT-AAATTTGTAAATTAAATTATATTTTTAACTCATA
196 ATATTATTCATTATATTATTTAAAATTT-TAAAATTTGTAAATTAAATTATATTTTTAACTCATA
19043173 TTATACAAATATTAAATTATTTTATATTATATTATTCTTACA
260 TTATACAAATATTAAATTATTTTATATTATATTATTCTTACA
19043215 TATATATTTATTAATTATTTATTTATATTATTCTTACATATATATTTTCGTTA-TTTATATTATA
1 TATATATTTATTAATTATTTATTTATATTATTCTTACATATATATTTTCGTTATTTTATATTATA
19043279 TCTATTATATTTTTATTTCCTATATATATTTAAATTATATTTTATTATATAACATTTATTGTGTT
66 TCTATTATATTTTTATTTCCTATATATATTTAAATTATATTTTATTATATAACATTTATTGTGTT
19043344 TTTATTTTTATATTACCTTTTTATGTCATATATATCATATATTATCAATTATATTATTTATGTTT
131 TTTATTTTTATATTACCTTTTTATGTCATATATATCATATATTATCAATTATATTATTTATGTTT
19043409 ATATTATTCATTATATTATTTAAAATTTTAAAATTTGTAAATTAAATTATATTTTTAACTCATAT
196 ATATTATTCATTATATTATTTAAAATTTTAAAATTTGTAAATTAAATTATATTTTTAACTCATAT
*
19043474 TATACACATATTAAATTATTTTATATTATATT
261 TATACAAATATTAAATTATTTTATATTATATT
19043506 TATTATGTAT
Statistics
Matches: 288, Mismatches: 2, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
299 1 0.00
300 235 0.82
301 52 0.18
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.58
Consensus pattern (301 bp):
TATATATTTATTAATTATTTATTTATATTATTCTTACATATATATTTTCGTTATTTTATATTATA
TCTATTATATTTTTATTTCCTATATATATTTAAATTATATTTTATTATATAACATTTATTGTGTT
TTTATTTTTATATTACCTTTTTATGTCATATATATCATATATTATCAATTATATTATTTATGTTT
ATATTATTCATTATATTATTTAAAATTTTAAAATTTGTAAATTAAATTATATTTTTAACTCATAT
TATACAAATATTAAATTATTTTATATTATATTATTCTTACA
Found at i:19043517 original size:26 final size:26
Alignment explanation
Indices: 19043488--19043539 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
19043478 CACATATTAA
* *
19043488 ATTATTTT-ATATTATATTTATTATGT
1 ATTATTTTAAAATGATATTT-TTATGT
19043514 ATTATTTTAAAATGATATTTTTATGT
1 ATTATTTTAAAATGATATTTTTATGT
19043540 TATTTGTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 14 0.61
27 9 0.39
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.62
Consensus pattern (26 bp):
ATTATTTTAAAATGATATTTTTATGT
Found at i:19043903 original size:33 final size:32
Alignment explanation
Indices: 19043834--19043908 Score: 102
Period size: 30 Copynumber: 2.4 Consensus size: 32
19043824 ATTGATATTG
*
19043834 TATTATT-CTTTTTTGGTATGTCATGCATTAT
1 TATTATTACTTTTTTGGTATATCATGCATTAT
19043865 T-TTATTACTTTTTT-GTATATCATGCATTATT
1 TATTATTACTTTTTTGGTATATCATGCATTA-T
19043896 TAATTATTACTTT
1 T-ATTATTACTTT
19043909 GTATGTTTGT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
30 19 0.49
31 10 0.26
33 10 0.26
ACGTcount: A:0.23, C:0.09, G:0.08, T:0.60
Consensus pattern (32 bp):
TATTATTACTTTTTTGGTATATCATGCATTAT
Found at i:19046995 original size:34 final size:34
Alignment explanation
Indices: 19046957--19047024 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
19046947 GAAAATAAAT
19046957 TAGTGTGCCTGGTAGAGAAGAAAAGTGAGAAGGA
1 TAGTGTGCCTGGTAGAGAAGAAAAGTGAGAAGGA
19046991 TAGTGTGCCTGGTAGAGAAGAAAAGTGAGAAGGA
1 TAGTGTGCCTGGTAGAGAAGAAAAGTGAGAAGGA
19047025 AGAAAATAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.38, C:0.06, G:0.38, T:0.18
Consensus pattern (34 bp):
TAGTGTGCCTGGTAGAGAAGAAAAGTGAGAAGGA
Found at i:19049521 original size:24 final size:24
Alignment explanation
Indices: 19049492--19049543 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
19049482 TAATTTAACC
*
19049492 ATATTTTAACATAATTATTATTAA
1 ATATTTTAACATAATAATTATTAA
19049516 ATATTTTAACATAATAATTATTAA
1 ATATTTTAACATAATAATTATTAA
19049540 ATAT
1 ATAT
19049544 AATAGTTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (24 bp):
ATATTTTAACATAATAATTATTAA
Found at i:19049993 original size:19 final size:20
Alignment explanation
Indices: 19049961--19050008 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 20
19049951 TTTACAATAA
**
19049961 TTTATTTAGCTATTTAACTT
1 TTTATTTAATTATTTAACTT
* *
19049981 TTT-TTTAATTATTTTAGTT
1 TTTATTTAATTATTTAACTT
19050000 TTTATTTAA
1 TTTATTTAA
19050009 ATTTTTAGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.67
Consensus pattern (20 bp):
TTTATTTAATTATTTAACTT
Found at i:19050014 original size:19 final size:19
Alignment explanation
Indices: 19049979--19050022 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
19049969 GCTATTTAAC
*
19049979 TTTTTTTTAATTATTTTAG
1 TTTTTTTTAAATATTTTAG
19049998 TTTTTATTTAAAT-TTTTAG
1 TTTTT-TTTAAATATTTTAG
19050017 TTTTTT
1 TTTTTT
19050023 CTAGCTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 1 0.04
19 16 0.70
20 6 0.26
ACGTcount: A:0.20, C:0.00, G:0.05, T:0.75
Consensus pattern (19 bp):
TTTTTTTTAAATATTTTAG
Found at i:19054677 original size:37 final size:37
Alignment explanation
Indices: 19054614--19054722 Score: 157
Period size: 37 Copynumber: 2.9 Consensus size: 37
19054604 AGCTCAGATG
* *
19054614 AAATCTCCACACGAAGTTATCT-GGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCAT-TGGGTCTTACCCGGACA
19054651 AAATCTCCACACGTAGTCATTGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATTGGGTCTTACCCGGACA
* * *
19054688 TAATCTCCACACGTAATCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATTGGGTCTTACCCGGA
19054723 ATATATTTCC
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
36 1 0.02
37 65 0.98
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATTGGGTCTTACCCGGACA
Found at i:19054923 original size:48 final size:48
Alignment explanation
Indices: 19054864--19055248 Score: 635
Period size: 48 Copynumber: 8.0 Consensus size: 48
19054854 TATACACACG
* * * *
19054864 TCTCCTACATATTTCACACTAGCCCTTCGGCTTTACCACATATACGTA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
*
19054912 TCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
* ** *
19054960 TCTCATATATATTTCACATTAGCCATTCGGCTTTATAAGATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
19055008 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
*
19055056 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACCTA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
*
19055104 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACCTA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
* * *
19055152 TCTCATACATATTTCACATTAGCCATTCAGCTTTACCGCATATACCTA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
*
19055200 TCTCATACATATTTCACATTAGCCATTCGGTTTTACCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
19055248 T
1 T
19055249 ATTTATCTTG
Statistics
Matches: 318, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 318 1.00
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.36
Consensus pattern (48 bp):
TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
Found at i:19058894 original size:40 final size:40
Alignment explanation
Indices: 19058862--19059418 Score: 826
Period size: 40 Copynumber: 13.7 Consensus size: 40
19058852 CCAGTATGAT
* **
19058862 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCATAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
* *
19058902 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
*
19058942 TGCTCTTCGGGACTTAGCCTGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
* *
19058982 TGCTCTTCGGGACTTAGCCCGGCTATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGG--ATATAACACCAGCACGAA
19059024 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
* * *
19059064 TGCTCTTCGGGACTTAGCCCGGCTTTATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGG--ATATAACACCAGCACGAA
19059106 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
* * *
19059146 TGCTCTTCGGGGCTTAGCCCGGCTATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGG--ATATAACACCAGCACGAA
**
19059188 TGCTCTTCGAAACTTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
* *
19059228 TGCTCTTCGGGACTTAGCCCGGCTATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGG--ATATAACACCAGCACGAA
19059270 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
* * *
19059310 TGCTCTTCGGGGCTTAGCCCGGCTATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGG--ATATAACACCAGCACGAA
19059352 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
*
19059392 TGCTCTTCGGGACTTAGCCCGGCTATA
1 TGCTCTTCGGGACTTAGCCCGGATATA
19059419 TAACTCTCAA
Statistics
Matches: 467, Mismatches: 40, Indels: 20
0.89 0.08 0.04
Matches are distributed among these distances:
40 282 0.60
42 185 0.40
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
Found at i:19059051 original size:82 final size:82
Alignment explanation
Indices: 19058862--19059420 Score: 1023
Period size: 82 Copynumber: 6.8 Consensus size: 82
19058852 CCAGTATGAT
* **
19058862 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCATAAATGCTCTTCGGGACTTAGCCCGG--A
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTA
19058925 TATATCACTAGCACGAA
66 TATATCACTAGCACGAA
*
19058942 TGCTCTTCGGGACTTAGCCTGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTA
19059007 TATATCACTAGCACGAA
66 TATATCACTAGCACGAA
*
19059024 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTT
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTA
19059089 TATATCACTAGCACGAA
66 TATATCACTAGCACGAA
*
19059106 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGCTTAGCCCGGCTA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTA
19059171 TATATCACTAGCACGAA
66 TATATCACTAGCACGAA
**
19059188 TGCTCTTCGAAACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTA
19059253 TATATCACTAGCACGAA
66 TATATCACTAGCACGAA
*
19059270 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGCTTAGCCCGGCTA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTA
19059335 TATATCACTAGCACGAA
66 TATATCACTAGCACGAA
19059352 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTA
19059417 TATA
66 TATA
19059421 ACTCTCAATT
Statistics
Matches: 462, Mismatches: 15, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
80 58 0.13
82 404 0.87
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (82 bp):
TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTA
TATATCACTAGCACGAA
Found at i:19060764 original size:37 final size:37
Alignment explanation
Indices: 19060701--19060842 Score: 198
Period size: 37 Copynumber: 3.9 Consensus size: 37
19060691 AGCTCAAATG
* * *
19060701 AAATCTCCATACG-AAGTTATCTGGTCTTACCCAGACA
1 AAATCTCCACACGTAA-TCATCGGGTCTTACCCAGACA
19060738 AAATCTCCACACGTAATCATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAATCATCGGGTCTTACCCAGACA
* **
19060775 TAATCTCCACACGTAGCCATCGGGTCTTACCC-GACA
1 AAATCTCCACACGTAATCATCGGGTCTTACCCAGACA
*
19060811 TAATCTCCACACGTAATCATCGGGTCTTACCC
1 AAATCTCCACACGTAATCATCGGGTCTTACCC
19060843 GGAATATATT
Statistics
Matches: 96, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
36 34 0.35
37 60 0.62
38 2 0.02
ACGTcount: A:0.29, C:0.32, G:0.14, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAATCATCGGGTCTTACCCAGACA
Found at i:19060843 original size:36 final size:37
Alignment explanation
Indices: 19060723--19060842 Score: 206
Period size: 37 Copynumber: 3.3 Consensus size: 37
19060713 GAAGTTATCT
*
19060723 GGTCTTACCCAGACAAAATCTCCACACGTAATCATCG
1 GGTCTTACCCAGACATAATCTCCACACGTAATCATCG
**
19060760 GGTCTTACCCAGACATAATCTCCACACGTAGCCATCG
1 GGTCTTACCCAGACATAATCTCCACACGTAATCATCG
19060797 GGTCTTACCC-GACATAATCTCCACACGTAATCATCG
1 GGTCTTACCCAGACATAATCTCCACACGTAATCATCG
19060833 GGTCTTACCC
1 GGTCTTACCC
19060843 GGAATATATT
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
36 34 0.44
37 44 0.56
ACGTcount: A:0.28, C:0.34, G:0.15, T:0.23
Consensus pattern (37 bp):
GGTCTTACCCAGACATAATCTCCACACGTAATCATCG
Found at i:19061049 original size:48 final size:48
Alignment explanation
Indices: 19060995--19061323 Score: 559
Period size: 48 Copynumber: 6.9 Consensus size: 48
19060985 CGTATCCTAA
* * * *
19060995 ATATTTCACACTAGCCCTTCGACTTTACCACATATACGTATCTCATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAC
* *
19061043 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAC
* ** *
19061091 ATATTTCACATTAGCCATTCAGCTTTATAAGATATACATATCTCATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAC
19061139 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAC
19061187 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAC
*
19061235 ATATTTCACATTAGCCATTCGGCTTTACCACATATACCTATCTCATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAC
19061283 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
19061324 ATTTATCTTG
Statistics
Matches: 265, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 265 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAC
Found at i:19065447 original size:16 final size:16
Alignment explanation
Indices: 19065426--19065459 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
19065416 CTTCCACTTT
19065426 TTCCAACTATTTGTTG
1 TTCCAACTATTTGTTG
19065442 TTCCAACTATTTGTTG
1 TTCCAACTATTTGTTG
19065458 TT
1 TT
19065460 GGTATAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.18, C:0.18, G:0.12, T:0.53
Consensus pattern (16 bp):
TTCCAACTATTTGTTG
Found at i:19069952 original size:28 final size:28
Alignment explanation
Indices: 19069908--19069965 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
19069898 AGATAAACAG
*
19069908 TTTCATTCAGAGATATAAGAGAAAATTT
1 TTTCATTCAGAGATATAAGAGAAAACTT
* *
19069936 TTTCATTCAGAGGTATAGGAGAAAACTT
1 TTTCATTCAGAGATATAAGAGAAAACTT
19069964 TT
1 TT
19069966 ATATCGTTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.36
Consensus pattern (28 bp):
TTTCATTCAGAGATATAAGAGAAAACTT
Found at i:19071582 original size:228 final size:228
Alignment explanation
Indices: 19071169--19071641 Score: 551
Period size: 228 Copynumber: 2.1 Consensus size: 228
19071159 GCATACTGGC
* * *
19071169 ACACGGGCTTGTGGT-T-GGCCATGTAACTCATTGTTCATCAATTTGGGGCCATATAGGCAAGGC
1 ACACGGGCTTGT-GTCTAGGCCATGTAACTCATTGTTCATCAATTTAGGGACACATAGGCAAGGC
* * * * * * *
19071232 ATACGGCCATGTGTCTAGGCCGTGTGTGGCAATATTAGTGCAGAGTTCGAGGGGCAACAGACATG
65 ACACGGCCATGTATCTAGGCCGCGTGTGGCAATATTAGTGCAAAGTTCGACGAGCAACAGACACG
* **
19071297 GGCGTGTGTGTCTAGGCATGTAACTCATTATTTGTGGTACAAAACCACACGGCTAGGGACACGAG
130 GGCG-ATGTGTCTAGGCATACAACTCATTATTTGTGGTACAAAACCACACGGCTAGGGACACGAG
* * * *
19071362 CGTGTTCCCAGGCCATATGAGTCACATAGCCAGGG
194 CATGTACCCAGGCCATATAAGTCACACAGCCAGGG
* * *
19071397 ACACGGGCTTGTGTCTAGGCCGTGTAACTCATTGTTCATCAATTTAGGGATACATAGGCAAGGTA
1 ACACGGGCTTGTGTCTAGGCCATGTAACTCATTGTTCATCAATTTAGGGACACATAGGCAAGGCA
* * * * *
19071462 CATGGCTATGTATCTTGGCCGCGTGTGGCCATATTAGTGCAAAGTTCGCACGAGTAAC-GTACAC
66 CACGGCCATGTATCTAGGCCGCGTGTGGCAATATTAGTGCAAAGTTCG-ACGAGCAACAG-ACAC
* * * *
19071526 GGGC-ATGTGTCTAGGCGA-ACAACTTATTGTTTGTGGTACAAAACCACATGGCTAGGGACACGG
129 GGGCGATGTGTCTAGGC-ATACAACTCATTATTTGTGGTACAAAACCACACGGCTAGGGACACGA
* * * *
19071589 GCATGTACCCAGGCCGTGTAAGTCACACGGGCAGGG
193 GCATGTACCCAGGCCATATAAGTCACACAGCCAGGG
* *
19071625 ACACGGACGTGTGTCTA
1 ACACGGGCTTGTGTCTA
19071642 AAACATATAA
Statistics
Matches: 205, Mismatches: 35, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
227 2 0.01
228 106 0.52
229 84 0.41
230 13 0.06
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (228 bp):
ACACGGGCTTGTGTCTAGGCCATGTAACTCATTGTTCATCAATTTAGGGACACATAGGCAAGGCA
CACGGCCATGTATCTAGGCCGCGTGTGGCAATATTAGTGCAAAGTTCGACGAGCAACAGACACGG
GCGATGTGTCTAGGCATACAACTCATTATTTGTGGTACAAAACCACACGGCTAGGGACACGAGCA
TGTACCCAGGCCATATAAGTCACACAGCCAGGG
Found at i:19076945 original size:7 final size:6
Alignment explanation
Indices: 19076930--19076961 Score: 55
Period size: 6 Copynumber: 5.2 Consensus size: 6
19076920 CATTTCTAGG
19076930 TCATTT TCATTTT TCATTT TCATTT TCATTT T
1 TCATTT TCA-TTT TCATTT TCATTT TCATTT T
19076962 AGAGAAAACC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 19 0.76
7 6 0.24
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.69
Consensus pattern (6 bp):
TCATTT
Found at i:19076993 original size:57 final size:57
Alignment explanation
Indices: 19076932--19077066 Score: 175
Period size: 57 Copynumber: 2.4 Consensus size: 57
19076922 TTTCTAGGTC
*
19076932 ATTTTCATTTTTCATTTTCATTTTCATTTTAGAGAAAACCATATTCATTTCCAAATG
1 ATTTTCATTTTTCATTTTCATTTTCATTTTAGAGAAAACCATAATCATTTCCAAATG
* * * * *
19076989 ATTTT-ATTTCTCCATTTTTATTTTTATTTTGGAGGAAACCATAATCATTTCCAAATG
1 ATTTTCATTT-TTCATTTTCATTTTCATTTTAGAGAAAACCATAATCATTTCCAAATG
19077046 -TTTCTCATTTTTACATTTTCA
1 ATTT-TCATTTTT-CATTTTCA
19077067 CCATTTTTAT
Statistics
Matches: 66, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
56 7 0.11
57 48 0.73
58 11 0.17
ACGTcount: A:0.27, C:0.16, G:0.06, T:0.51
Consensus pattern (57 bp):
ATTTTCATTTTTCATTTTCATTTTCATTTTAGAGAAAACCATAATCATTTCCAAATG
Found at i:19084634 original size:3 final size:3
Alignment explanation
Indices: 19084626--19084672 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
19084616 GGAAAAGCAC
19084626 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
19084673 CAACGTGTCA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:19086674 original size:14 final size:15
Alignment explanation
Indices: 19086655--19086686 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
19086645 TTATTATGTG
19086655 ATAATAA-AAAATTA
1 ATAATAACAAAATTA
19086669 ATAATAACAAAATTA
1 ATAATAACAAAATTA
19086684 ATA
1 ATA
19086687 TTAATTAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (15 bp):
ATAATAACAAAATTA
Found at i:19094168 original size:14 final size:15
Alignment explanation
Indices: 19094137--19094169 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
19094127 ATAAAAAATG
*
19094137 ATATTTATTATTAGT
1 ATATTTATTATTAAT
19094152 ATATTTA-TATTAAT
1 ATATTTATTATTAAT
19094166 ATAT
1 ATAT
19094170 ATTTCTCACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:19096137 original size:19 final size:18
Alignment explanation
Indices: 19096115--19096162 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
19096105 ATTAATAATT
19096115 AATTTTTTAAAATATAAA
1 AATTTTTTAAAATATAAA
* **
19096133 AA-ATTCAAAAATATAAA
1 AATTTTTTAAAATATAAA
19096150 AATTATTTTAAAA
1 AATT-TTTTAAAA
19096163 AATTGAAAAT
Statistics
Matches: 22, Mismatches: 6, Indels: 3
0.71 0.19 0.10
Matches are distributed among these distances:
17 14 0.64
18 2 0.09
19 6 0.27
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (18 bp):
AATTTTTTAAAATATAAA
Found at i:19096171 original size:29 final size:29
Alignment explanation
Indices: 19096129--19096185 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
19096119 TTTTAAAATA
19096129 TAAAAAATTCAAAAATATAAAAATTATTT
1 TAAAAAATTCAAAAATATAAAAATTATTT
* * * *
19096158 TAAAAAATTGAAAATTATTAAACTTATT
1 TAAAAAATTCAAAAATATAAAAATTATT
19096186 AAAAAGTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.37
Consensus pattern (29 bp):
TAAAAAATTCAAAAATATAAAAATTATTT
Found at i:19098440 original size:21 final size:22
Alignment explanation
Indices: 19098381--19098452 Score: 78
Period size: 22 Copynumber: 3.3 Consensus size: 22
19098371 GGTTAAACAC
* *
19098381 CCGTGTGAATA-AGGGCACACAC
1 CCGTGTGAAGAGA-GGCACACAG
*
19098403 CCATGTGAAGAGAGGCACACAG
1 CCGTGTGAAGAGAGGCACACAG
19098425 CCGTGTGAAG-GAGGCACAC-G
1 CCGTGTGAAGAGAGGCACACAG
19098445 CTCGTGTG
1 C-CGTGTG
19098453 GACCAGGGAC
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
20 2 0.05
21 15 0.34
22 26 0.59
23 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.33, T:0.14
Consensus pattern (22 bp):
CCGTGTGAAGAGAGGCACACAG
Found at i:19111752 original size:45 final size:45
Alignment explanation
Indices: 19111643--19111816 Score: 196
Period size: 45 Copynumber: 3.9 Consensus size: 45
19111633 CGAATTCACC
* * * *
19111643 CACCGGCATT-TTGCCTGCTAGGCTCAAA-GCCCG-ATA-TCATTT
1 CACCGGCATTATAGCCTACTAGGCTCAAAGGCCTGAATAGT-ATCT
* * *
19111685 CACCAGCATTATAGCCTGCTAGGCTCGAAGGCCTGAATAGTATCT
1 CACCGGCATTATAGCCTACTAGGCTCAAAGGCCTGAATAGTATCT
* *
19111730 CATCGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAGTATCT
1 CACCGGCATTATAGCCTACTAGGCTCAAAGGCCTGAATAGTATCT
* *
19111775 CACCGGCGTCATAGCCTACTAGGCTCAAAGG-CTCGAATAGTA
1 CACCGGCATTATAGCCTACTAGGCTCAAAGGCCT-GAATAGTA
19111817 CCGTACGATA
Statistics
Matches: 113, Mismatches: 14, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
42 9 0.08
43 16 0.14
44 5 0.04
45 82 0.73
46 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (45 bp):
CACCGGCATTATAGCCTACTAGGCTCAAAGGCCTGAATAGTATCT
Found at i:19114949 original size:43 final size:44
Alignment explanation
Indices: 19114874--19114966 Score: 113
Period size: 43 Copynumber: 2.2 Consensus size: 44
19114864 CTTAATATAT
**
19114874 ATAATAATATTTCATGCAAATATAACTTAAAAT-AACAACATAA
1 ATAATAATATTTCATGCAAATATAACAAAAAATAAACAACATAA
*
19114917 ATAATCAAT-TTTCATGCAAATATATA-AAAAAATAAATAACATAA
1 ATAAT-AATATTTCATGCAAATATA-ACAAAAAATAAACAACATAA
19114961 A-AATAA
1 ATAATAA
19114967 CAAATAATTT
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.05
43 28 0.64
44 14 0.32
ACGTcount: A:0.59, C:0.10, G:0.02, T:0.29
Consensus pattern (44 bp):
ATAATAATATTTCATGCAAATATAACAAAAAATAAACAACATAA
Found at i:19114971 original size:18 final size:17
Alignment explanation
Indices: 19114940--19114973 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
19114930 ATGCAAATAT
*
19114940 ATAAAAAAATAAATAAC
1 ATAAAAAAACAAATAAC
19114957 ATAAAAATAACAAATAA
1 ATAAAAA-AACAAATAA
19114974 TTTATGAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (17 bp):
ATAAAAAAACAAATAAC
Found at i:19115375 original size:12 final size:12
Alignment explanation
Indices: 19115358--19115407 Score: 61
Period size: 12 Copynumber: 4.4 Consensus size: 12
19115348 AAATTATATA
19115358 TAATATAATAAG
1 TAATATAATAAG
19115370 TAATATAA-AA-
1 TAATATAATAAG
*
19115380 TAAAAT-ATAAG
1 TAATATAATAAG
*
19115391 TAATATAATAAA
1 TAATATAATAAG
19115403 TAATA
1 TAATA
19115408 CAAAATAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
9 1 0.03
10 7 0.22
11 7 0.22
12 17 0.53
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (12 bp):
TAATATAATAAG
Found at i:19117260 original size:90 final size:90
Alignment explanation
Indices: 19117107--19117649 Score: 816
Period size: 90 Copynumber: 6.0 Consensus size: 90
19117097 TCATGCTGAA
* ** * * * *
19117107 ATCTTTGATCTGCTCTTCGCCTAATACAGAGACGCTAAATCTATCATCTTCGATCTACTTCGATG
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATG
*
19117172 TAAACACACGAATGTCAGGTCTGCT
66 TAAACACACGAATGTCAGATCTGCT
* * * * * *
19117197 ATCTTCAATCTACTCCCCGTCTAATATAGAGAGGCCAAATCTATCATCTTCGATGTGCTTCGATG
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATG
19117262 TAAACACACGAATGTCAGATCTGCT
66 TAAACACACGAATGTCAGATCTGCT
* *
19117287 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATTTGTCATCTTCGATCTGCTTTGATG
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATG
*
19117352 TAATCACACGAATGTCAGATCTGCT
66 TAAACACACGAATGTCAGATCTGCT
* * *
19117377 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCAGCTTTGATA
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATG
*
19117442 TAAACACACGAATGTCAGATCTACT
66 TAAACACACGAATGTCAGATCTGCT
* * *
19117467 ATCTTCAATCTGCTCCCTGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTACTTCGATG
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATG
* *
19117532 TAAACACACGAATGTTAGATCTACT
66 TAAACACACGAATGTCAGATCTGCT
** * *
19117557 ATCTTCGATCTGCTCTTCGTCTAATACAAAGACGCCAAATCTGTCATCTTTGATCTGCTTCGATG
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATG
19117622 TAAACACACGAATGTCAGATCTGCT
66 TAAACACACGAATGTCAGATCTGCT
19117647 ATC
1 ATC
19117650 GGCAAGAGGA
Statistics
Matches: 411, Mismatches: 42, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
90 411 1.00
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.31
Consensus pattern (90 bp):
ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTTCGATG
TAAACACACGAATGTCAGATCTGCT
Found at i:19126103 original size:27 final size:27
Alignment explanation
Indices: 19126025--19126103 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 27
19126015 CATGGCTGCT
* *
19126025 AGAACAGATAA-TGTGACAGAGTCACC
1 AGAACAGATAATTGTGGCAGAGCCACC
*
19126051 AGAACAGATAATTGTGGCAGAACCACC
1 AGAACAGATAATTGTGGCAGAGCCACC
* *
19126078 AGATCAGATAATTGTGGCATAGCCAC
1 AGAACAGATAATTGTGGCAGAGCCAC
19126104 TAGGACGCTT
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
26 11 0.24
27 35 0.76
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.18
Consensus pattern (27 bp):
AGAACAGATAATTGTGGCAGAGCCACC
Found at i:19133128 original size:41 final size:43
Alignment explanation
Indices: 19133081--19133170 Score: 114
Period size: 43 Copynumber: 2.1 Consensus size: 43
19133071 TGAATATAAC
* * *
19133081 AATATAAATT-ACATAA-AATATATATAAT-AATATTTCATGCA
1 AATATAAATTAAAATAACAACATAAATAATCAAT-TTTCATGCA
*
19133122 AATATAACTTAAAATAACAACATAAATAATCAATTTTCATGCA
1 AATATAAATTAAAATAACAACATAAATAATCAATTTTCATGCA
19133165 AATATA
1 AATATA
19133171 TAAAAAATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
41 9 0.21
42 5 0.12
43 25 0.60
44 3 0.07
ACGTcount: A:0.54, C:0.10, G:0.02, T:0.33
Consensus pattern (43 bp):
AATATAAATTAAAATAACAACATAAATAATCAATTTTCATGCA
Found at i:19133187 original size:43 final size:42
Alignment explanation
Indices: 19133104--19133195 Score: 109
Period size: 43 Copynumber: 2.2 Consensus size: 42
19133094 TAAAATATAT
*
19133104 ATAATAATATTTCATGCAAATATAACTTAAAATAACAACATAA
1 ATAATAATATTTCATGCAAATATAAC-AAAAATAACAACATAA
*
19133147 ATAATCAAT-TTTCATGCAAATATATA-AAAAATAAATAACATAA
1 ATAAT-AATATTTCATGCAAATATA-ACAAAAAT-AACAACATAA
19133190 A-AATAA
1 ATAATAA
19133196 CAAATAATTT
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
41 2 0.05
42 8 0.18
43 30 0.68
44 4 0.09
ACGTcount: A:0.59, C:0.10, G:0.02, T:0.29
Consensus pattern (42 bp):
ATAATAATATTTCATGCAAATATAACAAAAATAACAACATAA
Found at i:19140363 original size:45 final size:45
Alignment explanation
Indices: 19140256--19140426 Score: 226
Period size: 45 Copynumber: 3.9 Consensus size: 45
19140246 ATTCATCCAT
* *
19140256 CGGCATT-TCGCCTGCTAGGCTCGAA-GCCCG-ATA-TCAT-TACAC
1 CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATCT-CAC
* *
19140298 CGGTATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATCTCAC
1 CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCAC
*
19140343 CAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCAC
1 CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCAC
* *
19140388 CGGCATCATAGCCTGCTAGGCTCAAAGGCCCAAATAGTA
1 CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
19140427 CCGTACGATA
Statistics
Matches: 116, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
42 6 0.05
43 17 0.15
44 5 0.04
45 86 0.74
46 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.22
Consensus pattern (45 bp):
CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCAC
Found at i:19143139 original size:14 final size:15
Alignment explanation
Indices: 19143106--19143143 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
19143096 TGCACTATCA
*
19143106 ATAAAATTCACATGTT
1 ATAAAATT-ACATATT
19143122 ATAAAATT-CATATT
1 ATAAAATTACATATT
19143136 ATAAAATT
1 ATAAAATT
19143144 TATTTTTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 13 0.62
16 8 0.38
ACGTcount: A:0.50, C:0.08, G:0.03, T:0.39
Consensus pattern (15 bp):
ATAAAATTACATATT
Found at i:19156991 original size:31 final size:31
Alignment explanation
Indices: 19156931--19156991 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
19156921 GTAATTTTTA
*
19156931 AGTTATTATTATAAGGGTAAAAATGTAAAAT
1 AGTTATTATTATAAGGGTAAAAATATAAAAT
*
19156962 AGTTATTATTATAA-GTTAAATAATATAAAA
1 AGTTATTATTATAAGGGTAAA-AATATAAAA
19156992 CAAATAAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 5 0.19
31 22 0.81
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.38
Consensus pattern (31 bp):
AGTTATTATTATAAGGGTAAAAATATAAAAT
Found at i:19157860 original size:46 final size:48
Alignment explanation
Indices: 19157809--19157915 Score: 130
Period size: 46 Copynumber: 2.2 Consensus size: 48
19157799 TCAGCTCATT
*
19157809 GGAGCTTACCGATTTAGCTCAAAAAAGCTTACTGAT-TCAGCTCGA-AA
1 GGAGCTTACCGATTCAGCTCAAAAAAGCTTACTGATATCAGCT-GAGAA
* * * *
19157856 -GAGCTTACTGATTCAGCTCGAAAGAGCTTACTGTTCATCAGCTGAGAA
1 GGAGCTTACCGATTCAGCTCAAAAAAGCTTACTGAT-ATCAGCTGAGAA
19157904 GGAGCTTACCGA
1 GGAGCTTACCGA
19157916 CTATGACTCA
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
46 30 0.60
47 2 0.04
48 8 0.16
49 10 0.20
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.25
Consensus pattern (48 bp):
GGAGCTTACCGATTCAGCTCAAAAAAGCTTACTGATATCAGCTGAGAA
Found at i:19157912 original size:26 final size:23
Alignment explanation
Indices: 19157810--19157892 Score: 123
Period size: 23 Copynumber: 3.7 Consensus size: 23
19157800 CAGCTCATTG
* * *
19157810 GAGCTTACCGATTTAGCTCAAAA
1 GAGCTTACTGATTCAGCTCGAAA
*
19157833 AAGCTTACTGATTCAGCTCGAAA
1 GAGCTTACTGATTCAGCTCGAAA
19157856 GAGCTTACTGATTCAGCTCGAAA
1 GAGCTTACTGATTCAGCTCGAAA
19157879 GAGCTTACTG-TTCA
1 GAGCTTACTGATTCA
19157893 TCAGCTGAGA
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
22 4 0.07
23 51 0.93
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (23 bp):
GAGCTTACTGATTCAGCTCGAAA
Found at i:19163998 original size:31 final size:31
Alignment explanation
Indices: 19163939--19163998 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
19163929 GTGATTTATA
* **
19163939 GTTATTATTATAAGGGTAAAAATGTAAAATG
1 GTTATTATTATAAGGATAAAAAAATAAAATG
19163970 GTTATTATTATAA-GATAAATAAAATAAAA
1 GTTATTATTATAAGGATAAA-AAAATAAAA
19163999 CAAATAAAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 5 0.20
31 20 0.80
ACGTcount: A:0.52, C:0.00, G:0.13, T:0.35
Consensus pattern (31 bp):
GTTATTATTATAAGGATAAAAAAATAAAATG
Found at i:19164937 original size:24 final size:23
Alignment explanation
Indices: 19164858--19164945 Score: 97
Period size: 23 Copynumber: 3.8 Consensus size: 23
19164848 GTACTCACCA
*
19164858 CAGCTC-ATAAGAGCTTACTGTTT
1 CAGCTCAAT-AGAGCTTACCGTTT
* * *
19164881 CAGCTCATTGGAGCTTACCGATT
1 CAGCTCAATAGAGCTTACCGTTT
19164904 CAGCTCAATAGAGCTTACCGTTTT
1 CAGCTCAATAGAGCTTACCG-TTT
* *
19164928 TAGCTCAATAAAGCTTAC
1 CAGCTCAATAGAGCTTAC
19164946 TATTCATCAG
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
23 35 0.65
24 19 0.35
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (23 bp):
CAGCTCAATAGAGCTTACCGTTT
Found at i:19165832 original size:12 final size:12
Alignment explanation
Indices: 19165799--19165832 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
19165789 ATTTTTCTCT
*
19165799 ACACGGGCAGAG
1 ACACGGGCATAG
19165811 ACACGGGCATAG
1 ACACGGGCATAG
*
19165823 ACATGGGCAT
1 ACACGGGCAT
19165833 CTGTCTCAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.32, C:0.24, G:0.35, T:0.09
Consensus pattern (12 bp):
ACACGGGCATAG
Found at i:19168532 original size:47 final size:47
Alignment explanation
Indices: 19168463--19168557 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
19168453 GTATTTTCCC
19168463 CAACACCCGTTGTTAGAAAATGTGCCCATATTGTAGTAAACATGTAA
1 CAACACCCGTTGTTAGAAAATGTGCCCATATTGTAGTAAACATGTAA
*
19168510 CAACACCCGTTGTTGGAAAATGTGCCCATATTGTAGTAAACATGTAA
1 CAACACCCGTTGTTAGAAAATGTGCCCATATTGTAGTAAACATGTAA
19168557 C
1 C
19168558 TATTTTCTAT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (47 bp):
CAACACCCGTTGTTAGAAAATGTGCCCATATTGTAGTAAACATGTAA
Found at i:19168639 original size:15 final size:15
Alignment explanation
Indices: 19168619--19168648 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
19168609 TTCACTATTA
*
19168619 TGTCTTTTGTATTTT
1 TGTCTTTTCTATTTT
19168634 TGTCTTTTCTATTTT
1 TGTCTTTTCTATTTT
19168649 GCATACATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.10, G:0.10, T:0.73
Consensus pattern (15 bp):
TGTCTTTTCTATTTT
Done.