Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 66 of 362
Found at i:20268978 original size:143 final size:144
Alignment explanation
Indices: 20268684--20269003 Score: 412
Period size: 143 Copynumber: 2.2 Consensus size: 144
20268674 TGATATGTGT
* * * ** *
20268684 GCCAGTGTAAAACCATGTCTGGGACATGGCGTCGGCCACGATGTGAGAGCCAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAATGTAAGACCATG
* * *
20268749 TTTGGAACATGGCATCGGCGATGTTGTGAGAGCTAGTGTAAGACCATGTGTGGGACATGGCATCA
66 TTTGGAACATGGCATCGGCGATGTAGCGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCA
* * **
20268814 GCATTGATATGTGC
131 GCATCGACATGTAA
** *
20268828 GATAGTGTAAGACGATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAATGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAATGTAAGACCATG
*
20268893 -TTGGAATATGGCATCGGC-AT-TGAGACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
66 TTTGGAACATGGCATCGGCGATGT-AG-CGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
* *
20268955 CGGCCTCGACATGTAA
129 CAGCATCGACATGTAA
* *
20268971 GCCAGTGTAAGACCATGTTTGGAACATGGCATC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC
20269004 AGTAATTCAC
Statistics
Matches: 150, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
141 1 0.01
142 3 0.02
143 90 0.60
144 56 0.37
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (144 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAATGTAAGACCATG
TTTGGAACATGGCATCGGCGATGTAGCGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCA
GCATCGACATGTAA
Found at i:20270552 original size:18 final size:18
Alignment explanation
Indices: 20270511--20270552 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
20270501 AAACTGCAAC
* * *
20270511 TCATCAAAACTCAGTTTT
1 TCATAAAAACTAAGGTTT
20270529 TC-TAAAAACTAAGGTTT
1 TCATAAAAACTAAGGTTT
20270546 TCATAAA
1 TCATAAA
20270553 TAAAAATGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (18 bp):
TCATAAAAACTAAGGTTT
Found at i:20272799 original size:28 final size:28
Alignment explanation
Indices: 20272767--20272891 Score: 148
Period size: 28 Copynumber: 4.5 Consensus size: 28
20272757 ATAGTAAGTC
*
20272767 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
20272795 CGCACAC-T--TGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
20272821 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
20272849 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
20272878 CGCACACTTAGTGC
1 CGCACACTTAGTGC
20272892 CAATCTCATG
Statistics
Matches: 83, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
25 2 0.02
26 20 0.24
27 2 0.02
28 38 0.46
29 21 0.25
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:20280396 original size:15 final size:16
Alignment explanation
Indices: 20280376--20280405 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
20280366 TCCTTGGTTG
20280376 AGAATT-TGGTAAGAC
1 AGAATTGTGGTAAGAC
20280391 AGAATTGTGGTAAGA
1 AGAATTGTGGTAAGA
20280406 TAGTAAGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.40, C:0.03, G:0.30, T:0.27
Consensus pattern (16 bp):
AGAATTGTGGTAAGAC
Found at i:20286432 original size:24 final size:24
Alignment explanation
Indices: 20286404--20286513 Score: 114
Period size: 24 Copynumber: 4.5 Consensus size: 24
20286394 TTACTCATTT
*
20286404 GCACACATAGTGCCACGT-TTCCTC
1 GCACACATAGTGCCACGTAAT-CTC
* *
20286428 GCACACATAGTGCTATGTAATCTC
1 GCACACATAGTGCCACGTAATCTC
* * *
20286452 GCACACATAGTGCCACGTAGTTTTT
1 GCACACATAGTGCCACGTA-ATCTC
* * *
20286477 GCACACATAGTGCCGCATAATCTA
1 GCACACATAGTGCCACGTAATCTC
20286501 GCACACATAGTGC
1 GCACACATAGTGC
20286514 TGAAATTTCT
Statistics
Matches: 71, Mismatches: 13, Indels: 4
0.81 0.15 0.05
Matches are distributed among these distances:
24 51 0.72
25 20 0.28
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (24 bp):
GCACACATAGTGCCACGTAATCTC
Found at i:20286485 original size:49 final size:48
Alignment explanation
Indices: 20286404--20286513 Score: 132
Period size: 49 Copynumber: 2.3 Consensus size: 48
20286394 TTACTCATTT
* ** *
20286404 GCACACATAGTGCCACGTTTCCTCGCACACATAGTGCTATGTAATCTC
1 GCACACATAGTGCCACGTTTCCTCGCACACATAGTGCCACATAATCTA
* * *
20286452 GCACACATAGTGCCACGTAGTT-TTTGCACACATAGTGCCGCATAATCTA
1 GCACACATAGTGCCACGT--TTCCTCGCACACATAGTGCCACATAATCTA
20286501 GCACACATAGTGC
1 GCACACATAGTGC
20286514 TGAAATTTCT
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
48 18 0.34
49 33 0.62
50 2 0.04
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCCACGTTTCCTCGCACACATAGTGCCACATAATCTA
Found at i:20287809 original size:19 final size:20
Alignment explanation
Indices: 20287772--20287811 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
20287762 TATCTCTCAT
* *
20287772 TCTTTTTCTTCTTTTATTCA
1 TCTTTTTCTTCATTAATTCA
20287792 TCTTTTTCTT-ATTAATTCA
1 TCTTTTTCTTCATTAATTCA
20287811 T
1 T
20287812 TTTATTTAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.68
Consensus pattern (20 bp):
TCTTTTTCTTCATTAATTCA
Found at i:20291203 original size:47 final size:46
Alignment explanation
Indices: 20291083--20291238 Score: 186
Period size: 47 Copynumber: 3.3 Consensus size: 46
20291073 CTATGGTCTT
* * **
20291083 GCACATATCACACACCGAAGCCATAGCCCAGCCATGGTCTTACACGAA
1 GCACATAT--CACACCGATGCCATATCCCAGATATGGTCTTACACGAA
* * *
20291131 TCACATATCACACTGATGCCATATCCCAGATCTGGTCTTACACAGAA
1 GCACATATCACACCGATGCCATATCCCAGATATGGTCTTACAC-GAA
* *
20291178 GCACATATCACACCGATGCCGTATCCCAGATATGGTCTTATACGGAA
1 GCACATATCACACCGATGCCATATCCCAGATATGGTCTTACAC-GAA
*
20291225 GCTCATATCACACC
1 GCACATATCACACC
20291239 TTGCCATGGT
Statistics
Matches: 93, Mismatches: 14, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
46 29 0.31
47 57 0.61
48 7 0.08
ACGTcount: A:0.31, C:0.32, G:0.15, T:0.21
Consensus pattern (46 bp):
GCACATATCACACCGATGCCATATCCCAGATATGGTCTTACACGAA
Found at i:20293618 original size:161 final size:161
Alignment explanation
Indices: 20293443--20293764 Score: 644
Period size: 161 Copynumber: 2.0 Consensus size: 161
20293433 CAAAAAATAA
20293443 AAAAATAAGAAATTGTTCAGTGAGTTGAATTTTGAGCCGAAATTTTCAAGATTAGATCTACATCA
1 AAAAATAAGAAATTGTTCAGTGAGTTGAATTTTGAGCCGAAATTTTCAAGATTAGATCTACATCA
20293508 TTTGATGAGACTCCAGTTTAAATTTCGTGATTTTTAGAATTCGGGAACACCTTGAACAAAAAAAT
66 TTTGATGAGACTCCAGTTTAAATTTCGTGATTTTTAGAATTCGGGAACACCTTGAACAAAAAAAT
20293573 TCAAGTTATTTTCCATTATTTTAGGATTTTG
131 TCAAGTTATTTTCCATTATTTTAGGATTTTG
20293604 AAAAATAAGAAATTGTTCAGTGAGTTGAATTTTGAGCCGAAATTTTCAAGATTAGATCTACATCA
1 AAAAATAAGAAATTGTTCAGTGAGTTGAATTTTGAGCCGAAATTTTCAAGATTAGATCTACATCA
20293669 TTTGATGAGACTCCAGTTTAAATTTCGTGATTTTTAGAATTCGGGAACACCTTGAACAAAAAAAT
66 TTTGATGAGACTCCAGTTTAAATTTCGTGATTTTTAGAATTCGGGAACACCTTGAACAAAAAAAT
20293734 TCAAGTTATTTTCCATTATTTTAGGATTTTG
131 TCAAGTTATTTTCCATTATTTTAGGATTTTG
20293765 GTTGGGTAGT
Statistics
Matches: 161, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
161 161 1.00
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (161 bp):
AAAAATAAGAAATTGTTCAGTGAGTTGAATTTTGAGCCGAAATTTTCAAGATTAGATCTACATCA
TTTGATGAGACTCCAGTTTAAATTTCGTGATTTTTAGAATTCGGGAACACCTTGAACAAAAAAAT
TCAAGTTATTTTCCATTATTTTAGGATTTTG
Found at i:20318148 original size:47 final size:47
Alignment explanation
Indices: 20318085--20318572 Score: 769
Period size: 47 Copynumber: 10.4 Consensus size: 47
20318075 CCCTTCGGGA
* * *
20318085 CTTATCACATTTATACACTTTCGCATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * *
20318132 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
20318179 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
20318226 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
20318273 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
20318320 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
20318367 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
20318414 CTTATCACATATATACATTTTCACATTCATCATATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
20318461 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
20318508 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
20318555 CTTATCACATATACACAC
1 CTTATCACATATATACAC
20318573 CTTGTACATC
Statistics
Matches: 417, Mismatches: 24, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 417 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:20327263 original size:23 final size:23
Alignment explanation
Indices: 20327236--20327281 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
20327226 ATGTGAAATA
20327236 TGTATGAGATATGTATATGTGGT
1 TGTATGAGATATGTATATGTGGT
20327259 TGTATGAGATATGTATATGTGGT
1 TGTATGAGATATGTATATGTGGT
20327282 AAAGCCGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.30, T:0.43
Consensus pattern (23 bp):
TGTATGAGATATGTATATGTGGT
Found at i:20327274 original size:71 final size:71
Alignment explanation
Indices: 20327190--20327329 Score: 271
Period size: 71 Copynumber: 2.0 Consensus size: 71
20327180 GAAATATATA
*
20327190 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTATATG
20327255 TGGTTG
66 TGGTTG
20327261 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTATATG
20327326 TGGT
66 TGGT
20327330 AAAGCCAAAT
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 68 1.00
ACGTcount: A:0.34, C:0.04, G:0.28, T:0.34
Consensus pattern (71 bp):
TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTATATG
TGGTTG
Found at i:20327311 original size:48 final size:48
Alignment explanation
Indices: 20327259--20327638 Score: 582
Period size: 48 Copynumber: 8.1 Consensus size: 48
20327249 TATATGTGGT
20327259 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
1 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
* *
20327307 TGTATGAGATAAGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATA
1 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
*
20327355 TGTATGAGATAAGTATA--T-GT---G--G--TGGCTAATGTGAAATA
1 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
* *
20327393 TGTATGAGATAAGTATATGTGGTAAAGTCGAATGGCTAATGTGAAATA
1 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
20327441 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
1 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
*
20327489 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGTTAATGTGAAATATA
1 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATA
*
20327539 TTTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
1 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
* * *
20327587 TGTATCAGATATGTATATGTGGTAAAACCGAATGGCTAGTGTGAAATA
1 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
20327635 TGTA
1 TGTA
20327639 GGCGATGTGT
Statistics
Matches: 308, Mismatches: 12, Indels: 24
0.90 0.03 0.07
Matches are distributed among these distances:
38 33 0.11
40 1 0.00
41 2 0.01
42 1 0.00
44 1 0.00
45 2 0.01
46 2 0.01
48 218 0.71
49 4 0.01
50 44 0.14
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
Found at i:20327374 original size:17 final size:17
Alignment explanation
Indices: 20327352--20327412 Score: 52
Period size: 17 Copynumber: 3.4 Consensus size: 17
20327342 CTAATGTGAA
20327352 ATATGTATGAGATAAGT
1 ATATGTATGAGATAAGT
* *
20327369 ATATGTGGTG-GCTAATGT
1 ATATGT-ATGAGATAA-GT
20327387 GAAATATGTATGAGATAAGT
1 ---ATATGTATGAGATAAGT
20327407 ATATGT
1 ATATGT
20327413 GGTAAAGTCG
Statistics
Matches: 34, Mismatches: 4, Indels: 12
0.68 0.08 0.24
Matches are distributed among these distances:
17 16 0.47
18 4 0.12
20 4 0.12
21 10 0.29
ACGTcount: A:0.36, C:0.02, G:0.26, T:0.36
Consensus pattern (17 bp):
ATATGTATGAGATAAGT
Found at i:20327390 original size:38 final size:38
Alignment explanation
Indices: 20327339--20327415 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
20327329 TAAAGCCAAA
20327339 TGGCTAATGTGAAATATGTATGAGATAAGTATATGTGG
1 TGGCTAATGTGAAATATGTATGAGATAAGTATATGTGG
20327377 TGGCTAATGTGAAATATGTATGAGATAAGTATATGTGG
1 TGGCTAATGTGAAATATGTATGAGATAAGTATATGTGG
20327415 T
1 T
20327416 AAAGTCGAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.34, C:0.03, G:0.29, T:0.35
Consensus pattern (38 bp):
TGGCTAATGTGAAATATGTATGAGATAAGTATATGTGG
Found at i:20327426 original size:134 final size:141
Alignment explanation
Indices: 20327259--20327638 Score: 576
Period size: 134 Copynumber: 2.7 Consensus size: 141
20327249 TATATGTGGT
*
20327259 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTATA
1 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
20327324 TGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATAAGTATA-T-GT-G-G-TGGCTAA
66 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTATAGTGGTAGCGATGGCTAA
20327384 TGTG-AA-ATA
131 TGTGAAATATA
* *
20327393 TGTATGAGATAAGTATATGTGGTAAAGTCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
20327458 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
66 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTATA-GTGGT--AG-CG-ATG
*
20327523 GTTAATGTGAAATATA
126 GCTAATGTGAAATATA
* *
20327539 TTTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATCAGATATGTATA
1 TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
20327604 TGTGGTAAAACCGAATGGCTAGTGTGAAATATGTA
66 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
20327639 GGCGATGTGT
Statistics
Matches: 222, Mismatches: 12, Indels: 12
0.90 0.05 0.05
Matches are distributed among these distances:
134 108 0.49
136 1 0.00
137 2 0.01
140 1 0.00
142 1 0.00
144 10 0.05
145 2 0.01
146 97 0.44
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (141 bp):
TGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTATAGTGGTAGCGATGGCTAA
TGTGAAATATA
Found at i:20327654 original size:98 final size:96
Alignment explanation
Indices: 20327377--20327638 Score: 443
Period size: 98 Copynumber: 2.7 Consensus size: 96
20327367 GTATATGTGG
* *
20327377 TGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGTCGAATGGCTAATGTGAAATAT
1 TGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
20327442 GTATGAGATATGTATATGTGGTAAAGCCGAA
66 GTATGAGATATGTATATGTGGTAAAGCCGAA
*
20327473 TGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGTTAATGTGAAATAT
1 TGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
*
20327538 ATTTATGAGATATGTATATGTGGTAAAGCCGAA
64 ATGTATGAGATATGTATATGTGGTAAAGCCGAA
* * *
20327571 TGGCTAATGTGAAATATGTATCAGATATGTATATGTGGTAAAACCGAATGGCTAGTGTGAAATAT
1 TGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
20327636 GTA
66 GTA
20327639 GGCGATGTGT
Statistics
Matches: 155, Mismatches: 9, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
96 62 0.40
97 4 0.03
98 89 0.57
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (96 bp):
TGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
GTATGAGATATGTATATGTGGTAAAGCCGAA
Found at i:20327857 original size:13 final size:13
Alignment explanation
Indices: 20327839--20327866 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
20327829 AAGACCCGAT
20327839 GACTACGTGTGGA
1 GACTACGTGTGGA
20327852 GACTACGTGTGGA
1 GACTACGTGTGGA
20327865 GA
1 GA
20327867 TTATGTCCGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.14, G:0.39, T:0.21
Consensus pattern (13 bp):
GACTACGTGTGGA
Found at i:20327877 original size:50 final size:50
Alignment explanation
Indices: 20327802--20327903 Score: 204
Period size: 50 Copynumber: 2.0 Consensus size: 50
20327792 AAGACCCGAT
20327802 GACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGA
1 GACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGA
20327852 GACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGA
1 GACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGA
20327902 GA
1 GA
20327904 TTTTGTCCGG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.25, C:0.18, G:0.34, T:0.24
Consensus pattern (50 bp):
GACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGA
Found at i:20327943 original size:37 final size:37
Alignment explanation
Indices: 20327853--20327943 Score: 155
Period size: 37 Copynumber: 2.5 Consensus size: 37
20327843 ACGTGTGGAG
* *
20327853 ACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATG
1 ACTACGTGTGGAGATTTTGTCCGGGTAAGACCCGATA
20327890 ACTACGTGTGGAGATTTTGTCCGGGTAAGACCCGATA
1 ACTACGTGTGGAGATTTTGTCCGGGTAAGACCCGATA
*
20327927 ACTTCGTGTGGAGATTT
1 ACTACGTGTGGAGATTT
20327944 CATCTGAGCT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 51 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.29
Consensus pattern (37 bp):
ACTACGTGTGGAGATTTTGTCCGGGTAAGACCCGATA
Found at i:20338178 original size:18 final size:18
Alignment explanation
Indices: 20338155--20338195 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
20338145 CCACTTTCTA
*
20338155 ATCATCCCTCATTCACTC
1 ATCATCCCTCACTCACTC
*
20338173 ATCATCCCTCACTCATTC
1 ATCATCCCTCACTCACTC
20338191 ATCAT
1 ATCAT
20338196 TCTCTCCTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.24, C:0.41, G:0.00, T:0.34
Consensus pattern (18 bp):
ATCATCCCTCACTCACTC
Found at i:20349103 original size:18 final size:18
Alignment explanation
Indices: 20349080--20349120 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
20349070 CATTTTTCTA
*
20349080 ATCATCCCTCATTCACTC
1 ATCATCCCTCACTCACTC
*
20349098 ATCATCCCTCACTCATTC
1 ATCATCCCTCACTCACTC
20349116 ATCAT
1 ATCAT
20349121 TCTCTCCTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.24, C:0.41, G:0.00, T:0.34
Consensus pattern (18 bp):
ATCATCCCTCACTCACTC
Found at i:20353878 original size:39 final size:40
Alignment explanation
Indices: 20353819--20354018 Score: 262
Period size: 40 Copynumber: 5.0 Consensus size: 40
20353809 CGGATGATAA
* *
20353819 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
20353859 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
20353898 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
20353938 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTCCTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
20353978 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
20354018 C
1 C
20354019 TAGTTGAATT
Statistics
Matches: 140, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
39 34 0.24
40 106 0.76
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:20362144 original size:40 final size:40
Alignment explanation
Indices: 20362037--20362239 Score: 252
Period size: 40 Copynumber: 5.1 Consensus size: 40
20362027 CGGATGATAA
* * * *
20362037 CCGGGCTAAGTCCCGGAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATA-T
*
20362077 CCGGGCTAAG-CCCGAAGGCAATT-GTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTATAT
20362116 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* * * *
20362156 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTCCTATAA
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
20362196 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
20362236 CCGG
1 CCGG
20362240 TTGAATTCCG
Statistics
Matches: 143, Mismatches: 15, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
39 33 0.23
40 110 0.77
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:20364924 original size:17 final size:17
Alignment explanation
Indices: 20364902--20364939 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
20364892 ATTTGGCCTT
20364902 TGTGGG-CCACATGGGC
1 TGTGGGTCCACATGGGC
*
20364918 GTGTGGGTCTACATGGGC
1 -TGTGGGTCCACATGGGC
20364936 TGTG
1 TGTG
20364940 TTGTGGGCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.11, C:0.18, G:0.45, T:0.26
Consensus pattern (17 bp):
TGTGGGTCCACATGGGC
Found at i:20369255 original size:28 final size:28
Alignment explanation
Indices: 20369223--20369292 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
20369213 AATAAGATTG
*
20369223 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
* *
20369251 GCACTAAGTGTGCAAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
20369279 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
20369293 GACTTACTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 35 0.95
29 2 0.05
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:20373037 original size:64 final size:67
Alignment explanation
Indices: 20372955--20373100 Score: 185
Period size: 67 Copynumber: 2.2 Consensus size: 67
20372945 GTACTATGTG
* * * * *
20372955 GTAGCTAGGTCACATGTGTGATAC-GG-GATGTATACCATGTAGACAAGAGAGCTACGGGAT-AA
1 GTAGCTAGGTCACATGTGTGATACAGGTGAAGGACACCATGTAGACAAAAGAGCTACGAGATAAA
20373017 AT
66 AT
* *
20373019 GTAGCTAGGTCGCATGTGTGATTCTAGGTGAAGGACACCATGTAGACAAAAGAGCTACGAGATAA
1 GTAGCTAGGTCACATGTGTGATAC-AGGTGAAGGACACCATGTAGACAAAAGAGCTACGAGATAA
20373084 AAT
65 AAT
20373087 G--GCTAGGTCACATG
1 GTAGCTAGGTCACATG
20373101 GGTGGTACTA
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
64 22 0.31
66 14 0.20
67 29 0.41
68 5 0.07
ACGTcount: A:0.33, C:0.15, G:0.29, T:0.23
Consensus pattern (67 bp):
GTAGCTAGGTCACATGTGTGATACAGGTGAAGGACACCATGTAGACAAAAGAGCTACGAGATAAA
AT
Found at i:20375707 original size:79 final size:79
Alignment explanation
Indices: 20375557--20375737 Score: 206
Period size: 79 Copynumber: 2.3 Consensus size: 79
20375547 AAATCACGTA
* * * *
20375557 CCTTCGGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGATTATAGA
1 CCTTCGGAACTTAACCGGATATAGCTACTCGTACAAATACCTTCGGGACATAGCCCGAATATAGA
20375622 AACTCGCACAAATG
66 AACTCGCACAAATG
* * *
20375636 CCTTCGGGACTTAACCCGGATTTAG-TAACTCGTACAAATACCTTCGGG-CTTAGCCCGGAAT-T
1 CCTTCGGAACTTAA-CCGGATATAGCT-ACTCGTACAAATACCTTCGGGACATAGCCC-GAATAT
* *
20375698 AGTATCTCGCACAAATG
63 AGAAACTCGCACAAATG
* *
20375715 CCTTCGGATCTTAGTCCGGATAT
1 CCTTCGGAACTTA-ACCGGATAT
20375738 GGTCACTTAG
Statistics
Matches: 85, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
79 54 0.64
80 31 0.36
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (79 bp):
CCTTCGGAACTTAACCGGATATAGCTACTCGTACAAATACCTTCGGGACATAGCCCGAATATAGA
AACTCGCACAAATG
Found at i:20375712 original size:39 final size:40
Alignment explanation
Indices: 20375590--20375774 Score: 164
Period size: 40 Copynumber: 4.7 Consensus size: 40
20375580 GCTACTCGTT
* * * *
20375590 CAAATGCCTTCGGGACATAGCCC-GATTATAGAAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAAT-TAGTAACTCGCA
* *
20375630 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
* * *
20375670 CAAATACCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
** * * *
20375709 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAAT-TAGTAAC-TCGCA
*
20375750 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
20375775 CATCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 13
0.81 0.11 0.09
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 72 0.59
41 15 0.12
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
Found at i:20375759 original size:79 final size:80
Alignment explanation
Indices: 20375590--20375774 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 80
20375580 GCTACTCGTT
* * * * *
20375590 CAAATGCCTTCGGGACATAGCCC-GATTATAGAAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATACCTTCGGGACTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGGACTTAACCCG
* * *
20375654 GATTTAGTAACTCGTA
65 GATATAGTAACTAGCA
**
20375670 CAAATACCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATACCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
20375733 GATATGGTCACTTAGCA
65 GATATAGTAAC-TAGCA
*
20375750 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATACCTTCGGGACTTAGCCCGGA
20375775 CATCATTCAA
Statistics
Matches: 88, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
78 3 0.03
79 51 0.58
80 34 0.39
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAATACCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCA
Found at i:20389557 original size:25 final size:25
Alignment explanation
Indices: 20389529--20389579 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
20389519 ATACATATTC
20389529 ATGACCGTGATCATCTTAAGTCATT
1 ATGACCGTGATCATCTTAAGTCATT
20389554 ATGACCGTGATCATCTTAAGTCATT
1 ATGACCGTGATCATCTTAAGTCATT
20389579 A
1 A
20389580 AGCCAATTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (25 bp):
ATGACCGTGATCATCTTAAGTCATT
Found at i:20406799 original size:49 final size:47
Alignment explanation
Indices: 20406727--20406899 Score: 154
Period size: 49 Copynumber: 3.6 Consensus size: 47
20406717 TGTTGTGTGT
*
20406727 CAGTGTAAGACCTATCTAGGACATGGCATCGACACTAATAGATGAAAGC
1 CAGTGTAAGACCTGTCTAGGACATGGCATCGAC-CTAATAGAT-AAAGC
* * * * * *
20406776 CAGTGTAAGACCTGTCTGGGACATGACATCGGCCTTGATATATAAAAGT
1 CAGTGTAAGACCTGTCTAGGACATGGCATCGACC-TAATAGAT-AAAGC
* * * *
20406825 CAGTGTAAGACCTGT-TTGGAAGATGGCATCGACTTTAAT-G-TACTAGC
1 CAGTGTAAGACCTGTCTAGG-ACATGGCATCGAC-CTAATAGATA-AAGC
20406872 CAGTGTAAGACCATGTCTAGGACATGGC
1 CAGTGTAAGACC-TGTCTAGGACATGGC
20406900 GTCGGCATCT
Statistics
Matches: 99, Mismatches: 19, Indels: 13
0.76 0.15 0.10
Matches are distributed among these distances:
46 1 0.01
47 15 0.15
48 13 0.13
49 70 0.71
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (47 bp):
CAGTGTAAGACCTGTCTAGGACATGGCATCGACCTAATAGATAAAGC
Found at i:20419359 original size:17 final size:17
Alignment explanation
Indices: 20419339--20419373 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
20419329 CTTTTTCGAG
20419339 AAATTTACATCATCAAA
1 AAATTTACATCATCAAA
20419356 AAATTTACATCATCAAA
1 AAATTTACATCATCAAA
20419373 A
1 A
20419374 TAACAAGAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.17, G:0.00, T:0.29
Consensus pattern (17 bp):
AAATTTACATCATCAAA
Found at i:20423172 original size:8 final size:7
Alignment explanation
Indices: 20423144--20423169 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
20423134 CAAGACTAAT
20423144 TTTTTAA
1 TTTTTAA
20423151 TTTTTAA
1 TTTTTAA
20423158 TTTTTAA
1 TTTTTAA
20423165 TTTTT
1 TTTTT
20423170 TAACTAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (7 bp):
TTTTTAA
Found at i:20423825 original size:15 final size:14
Alignment explanation
Indices: 20423807--20423840 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
20423797 TCAATTCTTC
20423807 ATTTTGAATTAATTT
1 ATTTTGAA-TAATTT
*
20423822 ATTTTGCATAATTT
1 ATTTTGAATAATTT
20423836 ATTTT
1 ATTTT
20423841 CTTTTAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.29, C:0.03, G:0.06, T:0.62
Consensus pattern (14 bp):
ATTTTGAATAATTT
Found at i:20430595 original size:49 final size:49
Alignment explanation
Indices: 20430550--20430662 Score: 199
Period size: 49 Copynumber: 2.3 Consensus size: 49
20430540 CATAGTATCT
* *
20430550 TGCACTTAGTACTACCCATGCGACCAATTATCCGGTACACGTAGTAGCC
1 TGCACTTAGTACTACCAATGCGACCAATTATCCGGTACACGTAGTACCC
*
20430599 TGCACTTAGTACTACCAATGCGACCAATTATCCTGTACACGTAGTACCC
1 TGCACTTAGTACTACCAATGCGACCAATTATCCGGTACACGTAGTACCC
20430648 TGCACTTAGTACTAC
1 TGCACTTAGTACTAC
20430663 ACACGTGACC
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 61 1.00
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (49 bp):
TGCACTTAGTACTACCAATGCGACCAATTATCCGGTACACGTAGTACCC
Found at i:20430939 original size:27 final size:27
Alignment explanation
Indices: 20430898--20430952 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
20430888 CAGGTACAAC
* *
20430898 TCATGTAATAGTAATTTAACATTCAAT
1 TCATGTAACAATAATTTAACATTCAAT
**
20430925 TCATGTAACAATAATTTGCCATTCAAT
1 TCATGTAACAATAATTTAACATTCAAT
20430952 T
1 T
20430953 TCACATGACA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.38, C:0.15, G:0.07, T:0.40
Consensus pattern (27 bp):
TCATGTAACAATAATTTAACATTCAAT
Found at i:20446291 original size:79 final size:81
Alignment explanation
Indices: 20446158--20446339 Score: 230
Period size: 79 Copynumber: 2.3 Consensus size: 81
20446148 AATGATGTCT
*
20446158 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGT
*
20446222 GCGAGATACTA-ATTCC
66 GCGAGATACTATA-ACC
* * * **
20446238 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATTTG
*
20446300 TGCGAGTTACTATAACC
65 TGCGAGATACTATAACC
*
20446317 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
20446340 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 9, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGT
GCGAGATACTATAACC
Found at i:20446353 original size:40 final size:40
Alignment explanation
Indices: 20446158--20446339 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 40
20446148 AATGATGTCT
* * * *
20446158 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACC
* * *
20446198 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-ACC
20446238 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
*
20446277 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
*
20446317 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
20446340 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
Found at i:20446361 original size:79 final size:79
Alignment explanation
Indices: 20446208--20446372 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
20446198 GGACTAAGAT
* **
20446208 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
20446273 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
20446287 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
20446350 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
20446366 CCGAAGG
1 CCGAAGG
20446373 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:20454245 original size:79 final size:81
Alignment explanation
Indices: 20454109--20454293 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
20454099 TTGAATGATG
*
20454109 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
20454173 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
20454188 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
20454250 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
20454268 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
20454294 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:20454307 original size:40 final size:40
Alignment explanation
Indices: 20454110--20454293 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
20454100 TGAATGATGT
* * * *
20454110 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
20454150 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
20454190 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
20454228 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
20454269 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
20454294 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:20454315 original size:79 final size:79
Alignment explanation
Indices: 20454162--20454326 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
20454152 GGACTAAGAT
* **
20454162 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
20454227 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
20454241 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
20454304 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
20454320 CCGAAGG
1 CCGAAGG
20454327 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:20470135 original size:8 final size:8
Alignment explanation
Indices: 20470124--20470150 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
20470114 GAAATTCTTA
20470124 CATTCATG
1 CATTCATG
20470132 CATTCATG
1 CATTCATG
20470140 CATTCATG
1 CATTCATG
20470148 CAT
1 CAT
20470151 ATTTTGCTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.37
Consensus pattern (8 bp):
CATTCATG
Found at i:20480257 original size:49 final size:49
Alignment explanation
Indices: 20480196--20480315 Score: 134
Period size: 49 Copynumber: 2.4 Consensus size: 49
20480186 GTTGATGTCG
* *
20480196 TGTCCTAGACAGGTCTTACACTGACT-TTCATATATCGAGGCCGATGCCT
1 TGTCCCAGACAGGTCTTACACTGACTCTT-ATATATCGAGGCCGATGCCA
* * * * ***
20480245 TGTCCCAGACAGGTCTTACATTGGCTCTTATTTATCGATGTTTATGCCA
1 TGTCCCAGACAGGTCTTACACTGACTCTTATATATCGAGGCCGATGCCA
*
20480294 TGTCCCAGACAGGCCTTACACT
1 TGTCCCAGACAGGTCTTACACT
20480316 AACACACAAC
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
49 57 0.97
50 2 0.03
ACGTcount: A:0.22, C:0.27, G:0.19, T:0.33
Consensus pattern (49 bp):
TGTCCCAGACAGGTCTTACACTGACTCTTATATATCGAGGCCGATGCCA
Found at i:20483433 original size:22 final size:21
Alignment explanation
Indices: 20483408--20483449 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
20483398 GCTTAAATGG
20483408 TCACACGGGCGTGTTGCCCCTC
1 TCACACGGGCGT-TTGCCCCTC
*
20483430 TCACACGGGTGTTTGCCCCT
1 TCACACGGGCGTTTGCCCCT
20483450 GTGTTAAGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.10, C:0.38, G:0.26, T:0.26
Consensus pattern (21 bp):
TCACACGGGCGTTTGCCCCTC
Found at i:20493733 original size:50 final size:49
Alignment explanation
Indices: 20493618--20493806 Score: 243
Period size: 50 Copynumber: 3.8 Consensus size: 49
20493608 TGAGGTCGTA
* * * *
20493618 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GGTCACG
* * **
20493669 TGTGTAGTAATAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
* *
20493719 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* *
20493768 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
20493807 GCTTTGGCTA
Statistics
Matches: 121, Mismatches: 17, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
49 42 0.35
50 46 0.38
51 33 0.27
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:20526381 original size:46 final size:45
Alignment explanation
Indices: 20526331--20526506 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 45
20526321 TGGTTGAGCA
20526331 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
20526377 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
*
20526422 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
20526470 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
20526507 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:20526487 original size:93 final size:93
Alignment explanation
Indices: 20526328--20526499 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
20526318 GGATGGTTGA
* *
20526328 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
20526393 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
20526421 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
20526486 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
20526500 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:20532093 original size:58 final size:63
Alignment explanation
Indices: 20532012--20532133 Score: 209
Period size: 59 Copynumber: 2.0 Consensus size: 63
20532002 TTCGAGATTG
20532012 TTTGAAAGCTGCTTCAGATAGACAGAAATC-TATGCAGATCTAAAACGAAAGGA-ATTGAATT
1 TTTGAAAGCTGCTTCAGATAGACAGAAATCTTATGCAGATCTAAAACGAAAGGACATTGAATT
20532073 TTTGAAAG-TGCTTCA-A-AGACAGAAATCTTATGCAGATCTAAAACGAAAGGACATTGAATT
1 TTTGAAAGCTGCTTCAGATAGACAGAAATCTTATGCAGATCTAAAACGAAAGGACATTGAATT
20532133 T
1 T
20532134 CAAGTTGGTG
Statistics
Matches: 59, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
58 11 0.19
59 24 0.41
60 16 0.27
61 8 0.14
ACGTcount: A:0.41, C:0.13, G:0.19, T:0.27
Consensus pattern (63 bp):
TTTGAAAGCTGCTTCAGATAGACAGAAATCTTATGCAGATCTAAAACGAAAGGACATTGAATT
Found at i:20533770 original size:46 final size:46
Alignment explanation
Indices: 20533720--20533894 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
20533710 TGGTTGAGCA
20533720 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
20533766 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
20533811 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
20533859 CCCGAGCT-GTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
20533895 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 30 0.27
46 35 0.32
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:20536143 original size:15 final size:15
Alignment explanation
Indices: 20536123--20536165 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 15
20536113 TATATAAGGT
*
20536123 TAAAATAGTAATTTA
1 TAAAATACTAATTTA
20536138 TAAAATAACTAATTTA
1 TAAAAT-ACTAATTTA
20536154 TAAAATAACTAA
1 TAAAAT-ACTAA
20536166 GTAAAATAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 6 0.23
16 20 0.77
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (15 bp):
TAAAATACTAATTTA
Found at i:20536152 original size:16 final size:16
Alignment explanation
Indices: 20536131--20536165 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
20536121 GTTAAAATAG
20536131 TAATTTATAAAATAAC
1 TAATTTATAAAATAAC
20536147 TAATTTATAAAATAAC
1 TAATTTATAAAATAAC
20536163 TAA
1 TAA
20536166 GTAAAATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (16 bp):
TAATTTATAAAATAAC
Found at i:20536905 original size:46 final size:42
Alignment explanation
Indices: 20536818--20536905 Score: 104
Period size: 46 Copynumber: 2.0 Consensus size: 42
20536808 ATTAGGTTAG
* * *
20536818 TTATTGAGATAGCTTCGGCTATGTATTGGCACTTCGTGTGCA
1 TTATCGAGATAGCTTCGGCTATATATTGGCACTTCGGGTGCA
*
20536860 TTATCGAGATAGCTTCGGCTGTATATATATTGGTACTTCGGGTGCA
1 TTATCGAGATAGCTTCGGC----TATATATTGGCACTTCGGGTGCA
20536906 AGATTATTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
42 18 0.47
46 20 0.53
ACGTcount: A:0.20, C:0.16, G:0.26, T:0.38
Consensus pattern (42 bp):
TTATCGAGATAGCTTCGGCTATATATTGGCACTTCGGGTGCA
Found at i:20544817 original size:45 final size:46
Alignment explanation
Indices: 20544768--20544941 Score: 198
Period size: 45 Copynumber: 3.8 Consensus size: 46
20544758 TGGTTGAGCA
*
20544768 TCCGAACTCG-TGAGTTGAGTCCGACTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
20544813 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
20544858 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
20544906 CCCGAGCT-GTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
20544942 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 10, Indels: 20
0.78 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 40 0.37
46 23 0.21
47 29 0.27
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:20544933 original size:92 final size:92
Alignment explanation
Indices: 20544765--20544934 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 92
20544755 GGATGGTTGA
*
20544765 GCATCCGAACTCGTGAGTTGAGTCCGACTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTGAGTTGAGTCCGACTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGTT
20544830 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
* *
20544857 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCT-GTTGAGT
1 GCATCCGAACTCG-TGAGTTGAGTCCGACTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
20544921 TGAGTCCGAGTTCG
65 TGAGTCCGAGTTCG
20544935 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 34 0.46
93 40 0.54
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTGAGTTGAGTCCGACTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:20548493 original size:46 final size:46
Alignment explanation
Indices: 20548443--20548618 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
20548433 TGGTTGAGCA
20548443 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
20548489 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
20548534 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
20548582 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
20548619 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:20548599 original size:93 final size:93
Alignment explanation
Indices: 20548440--20548611 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
20548430 GGATGGTTGA
* *
20548440 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
20548505 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
20548533 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
20548598 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
20548612 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:20556020 original size:46 final size:46
Alignment explanation
Indices: 20555970--20556145 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
20555960 TGGTTGAGCA
20555970 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
20556016 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
20556061 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
20556109 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
20556146 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 63 0.56
47 29 0.26
48 3 0.03
50 5 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:20556126 original size:93 final size:93
Alignment explanation
Indices: 20555967--20556138 Score: 326
Period size: 93 Copynumber: 1.8 Consensus size: 93
20555957 GGATGGTTGA
*
20555967 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
20556032 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
20556060 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
20556125 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
20556139 CTTATGGGCG
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:20558445 original size:15 final size:15
Alignment explanation
Indices: 20558425--20558467 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 15
20558415 TATATAAGGT
*
20558425 TAAAATAGTAATTTA
1 TAAAATACTAATTTA
20558440 TAAAATAACTAATTTA
1 TAAAAT-ACTAATTTA
20558456 TAAAATAACTAA
1 TAAAAT-ACTAA
20558468 GTAAAAATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 6 0.23
16 20 0.77
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (15 bp):
TAAAATACTAATTTA
Found at i:20558454 original size:16 final size:16
Alignment explanation
Indices: 20558433--20558467 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
20558423 GTTAAAATAG
20558433 TAATTTATAAAATAAC
1 TAATTTATAAAATAAC
20558449 TAATTTATAAAATAAC
1 TAATTTATAAAATAAC
20558465 TAA
1 TAA
20558468 GTAAAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (16 bp):
TAATTTATAAAATAAC
Found at i:20559210 original size:46 final size:42
Alignment explanation
Indices: 20559123--20559210 Score: 104
Period size: 46 Copynumber: 2.0 Consensus size: 42
20559113 ATTAGGTTAG
* * *
20559123 TTATTGAGATAGCTTCGGCTATGTATTGGCACTTCGTGTGCA
1 TTATCGAGATAGCTTCGGCTATATATTGGCACTTCGGGTGCA
*
20559165 TTATCGAGATAGCTTCGGCTGTATATATATTGGTACTTCGGGTGCA
1 TTATCGAGATAGCTTCGGC----TATATATTGGCACTTCGGGTGCA
20559211 AGATTATTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
42 18 0.47
46 20 0.53
ACGTcount: A:0.20, C:0.16, G:0.26, T:0.38
Consensus pattern (42 bp):
TTATCGAGATAGCTTCGGCTATATATTGGCACTTCGGGTGCA
Found at i:20569559 original size:46 final size:45
Alignment explanation
Indices: 20569509--20569682 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
20569499 TGGTTGAGCA
20569509 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
20569555 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
20569601 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
20569647 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
20569683 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 17
0.80 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 36 0.33
46 64 0.58
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:20577097 original size:46 final size:45
Alignment explanation
Indices: 20577047--20577222 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 45
20577037 TGGTTGAGCA
20577047 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
20577093 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* * *
20577138 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGTATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
20577186 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
20577223 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 63 0.58
47 28 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:20577203 original size:93 final size:93
Alignment explanation
Indices: 20577044--20577215 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
20577034 GGATGGTTGA
* *
20577044 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
20577109 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * * *
20577137 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGTATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
20577202 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
20577216 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:20579038 original size:43 final size:43
Alignment explanation
Indices: 20578977--20579146 Score: 154
Period size: 43 Copynumber: 4.0 Consensus size: 43
20578967 ATTACCGATA
20578977 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATATCTGGGACATTGGCATTGTAT
* *
20579020 TGTGATTACATGTAAGACCATGTTTGGGACATTGGCATCAT-TA-
1 TGTGATTACATGTAAGACCATATCTGGGACATTGGCAT--TGTAT
* * * * * *
20579063 TATGATGTA-ATATAAGACTC-TGTCTAGGACAATGGCATCG-AT
1 TGTGAT-TACATGTAAGAC-CATATCTGGGACATTGGCATTGTAT
* * *
20579105 ATGTGATAACATGTAAGACCATATCTGAGATA-TGGCATTGTA
1 -TGTGATTACATGTAAGACCATATCTGGGACATTGGCATTGTA
20579147 CAAACTATAT
Statistics
Matches: 101, Mismatches: 16, Indels: 20
0.74 0.12 0.15
Matches are distributed among these distances:
41 1 0.01
42 9 0.09
43 85 0.84
44 5 0.05
45 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATATCTGGGACATTGGCATTGTAT
Found at i:20581043 original size:24 final size:24
Alignment explanation
Indices: 20580989--20581051 Score: 74
Period size: 24 Copynumber: 2.6 Consensus size: 24
20580979 TCAACCGTAT
* * *
20580989 TCGCACACATAGTGCTAATTACAC
1 TCGCACACATAGTGCCAAGTAAAC
*
20581013 TCACACACATAGTGCCATAGTAAAC
1 TCGCACACATAGTGCCA-AGTAAAC
20581038 -CGCACACATAGTGC
1 TCGCACACATAGTGC
20581052 ATTGGATTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.35, C:0.30, G:0.14, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCAAGTAAAC
Found at i:20591375 original size:43 final size:43
Alignment explanation
Indices: 20591348--20591531 Score: 224
Period size: 43 Copynumber: 4.3 Consensus size: 43
20591338 ATGGGATCTT
*
20591348 ATATCGATGCCAAGAGCCTAGCTATGGTCTTACACAAAGTCTC
1 ATATCGATGCCAAGAGCCTAGCTATGGTCATACACAAAGTCTC
* * **
20591391 ATCTCGATGCCAATAGCCTAGCTATGGTTTTACACAAAGTCTC
1 ATATCGATGCCAAGAGCCTAGCTATGGTCATACACAAAGTCTC
* * * * *
20591434 ATGTCGATGCCAATAGCCCAGCTATGGTCTTACACAAAGTTTC
1 ATATCGATGCCAAGAGCCTAGCTATGGTCATACACAAAGTCTC
* * * ** *
20591477 ATATCGATGCCAATAGCCCAGCTATGGTCTTATTCGAAGTCTC
1 ATATCGATGCCAAGAGCCTAGCTATGGTCATACACAAAGTCTC
20591520 ATATCGATGCCA
1 ATATCGATGCCA
20591532 TATCTCAGAT
Statistics
Matches: 129, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 129 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (43 bp):
ATATCGATGCCAAGAGCCTAGCTATGGTCATACACAAAGTCTC
Found at i:20591441 original size:86 final size:86
Alignment explanation
Indices: 20591348--20591554 Score: 281
Period size: 86 Copynumber: 2.4 Consensus size: 86
20591338 ATGGGATCTT
* * *
20591348 ATATCGATGCCAAGAGCCTAGCTATGGTCTTACACAAAGTCTCATCTCGATGCCAATAGCCTAGC
1 ATATCGATGCCAAGAGCCCAGCTATGGTCTTACACAAAGTCTCATATCGATGCCAATAGCCCAGC
*
20591413 TATGGTTTTACACAAAGTCTC
66 TATGGTCTTACACAAAGTCTC
* * *
20591434 ATGTCGATGCCAATAGCCCAGCTATGGTCTTACACAAAGTTTCATATCGATGCCAATAGCCCAGC
1 ATATCGATGCCAAGAGCCCAGCTATGGTCTTACACAAAGTCTCATATCGATGCCAATAGCCCAGC
** *
20591499 TATGGTCTTATTCGAAGTCTC
66 TATGGTCTTACACAAAGTCTC
* * * *
20591520 ATATCGATGCC-ATATCTCAGATATGGTCTTACACA
1 ATATCGATGCCAAGAGCCCAGCTATGGTCTTACACA
20591555 TAATCTTAGT
Statistics
Matches: 107, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
85 21 0.20
86 86 0.80
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (86 bp):
ATATCGATGCCAAGAGCCCAGCTATGGTCTTACACAAAGTCTCATATCGATGCCAATAGCCCAGC
TATGGTCTTACACAAAGTCTC
Found at i:20595441 original size:13 final size:13
Alignment explanation
Indices: 20595423--20595450 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
20595413 GACGAGGCTC
20595423 CTTCACTCCTTTG
1 CTTCACTCCTTTG
20595436 CTTCACTCCTTTG
1 CTTCACTCCTTTG
20595449 CT
1 CT
20595451 GATGGCTCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.39, G:0.07, T:0.46
Consensus pattern (13 bp):
CTTCACTCCTTTG
Found at i:20607382 original size:4 final size:4
Alignment explanation
Indices: 20607373--20607428 Score: 94
Period size: 4 Copynumber: 14.0 Consensus size: 4
20607363 TACTTTCACC
* *
20607373 TCTA TCTA TCTA TCAA TTTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
20607421 TCTA TCTA
1 TCTA TCTA
20607429 GGGCATATTT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 48 1.00
ACGTcount: A:0.27, C:0.23, G:0.00, T:0.50
Consensus pattern (4 bp):
TCTA
Found at i:20609460 original size:14 final size:14
Alignment explanation
Indices: 20609441--20609467 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
20609431 ACCTTATTCT
20609441 AAAATTAAATTTTA
1 AAAATTAAATTTTA
20609455 AAAATTAAATTTT
1 AAAATTAAATTTT
20609468 TATATGATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
AAAATTAAATTTTA
Found at i:20610032 original size:30 final size:30
Alignment explanation
Indices: 20609998--20610057 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
20609988 ATATATTTTA
20609998 TAGTCAATTTAAATATCATCACTCTATCAC
1 TAGTCAATTTAAATATCATCACTCTATCAC
20610028 TAGTCAATTTAAATATCATCACTCTATCAC
1 TAGTCAATTTAAATATCATCACTCTATCAC
20610058 AGAAAAGTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.23, G:0.03, T:0.37
Consensus pattern (30 bp):
TAGTCAATTTAAATATCATCACTCTATCAC
Found at i:20611628 original size:48 final size:48
Alignment explanation
Indices: 20611488--20611670 Score: 180
Period size: 48 Copynumber: 3.9 Consensus size: 48
20611478 ATTAGGGTTG
* * * *
20611488 TGTGGTCCCAAGTAAGACCATGTTTGGGACATGGCTTTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* ** * * * *
20611536 TGTAATTTCGTGTAAGACCATAGT-TGAG-C-T---ATCGGCATCAATA
1 TGTGATCCCATGTAAGACCAT-GTCTGGGACATGGCATTGGCATCGATA
*
20611579 TGTGATCCCATGTAAGACGATGTCTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* * *
20611627 TGTGATCCCATGTAAGACCATATCCGGGATATGGCATTGGCATC
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
20611671 CTACCATGTG
Statistics
Matches: 106, Mismatches: 22, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
42 2 0.02
43 29 0.27
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 69 0.65
49 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
Found at i:20613715 original size:15 final size:14
Alignment explanation
Indices: 20613697--20613730 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
20613687 TCAATTCTTC
20613697 ATTTTGAATTTGTTT
1 ATTTTGAA-TTGTTT
*
20613712 ATTTTGCATTGTTT
1 ATTTTGAATTGTTT
20613726 ATTTT
1 ATTTT
20613731 TTTTAGTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.18, C:0.03, G:0.12, T:0.68
Consensus pattern (14 bp):
ATTTTGAATTGTTT
Found at i:20619726 original size:46 final size:46
Alignment explanation
Indices: 20619606--20619828 Score: 252
Period size: 46 Copynumber: 4.8 Consensus size: 46
20619596 TAACCCACCT
* * * * *
20619606 ATAAGAGAACTCAGACTCAACTCAACGAGTTTGGATGCCTAG-TTAC
1 ATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATG-TTAGCATCC
* * * *
20619652 ATTTCA-CGAACTCAGACTCAACTCAACGAGTTTGGACGTTAGCATCC
1 A--TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGTTAGCATCC
* *
20619699 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCC
1 ATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGTTAGCATCC
* * *
20619745 ATATGTGAACTCAGACTCAACTCAACGAGTCCGGATGTTTGCATCC
1 ATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGTTAGCATCC
* * *
20619791 ATAAGTGAACTCGGGCTCAAATCAACGAGTTCGGATGT
1 ATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGT
20619829 CCAAATATCC
Statistics
Matches: 152, Mismatches: 21, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
45 2 0.01
46 115 0.76
47 33 0.22
48 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25
Consensus pattern (46 bp):
ATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGTTAGCATCC
Found at i:20619794 original size:92 final size:92
Alignment explanation
Indices: 20619659--20619828 Score: 286
Period size: 92 Copynumber: 1.8 Consensus size: 92
20619649 TACATTTCAC
** *
20619659 GAACTCAGACTCAACTCAACGAGTTTGGACGTTAGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGTCCGGACGTTAGCATCCATAAGTGAACTCGGACTCAAATCAA
20619724 CGAGTTCGGATGTTCGCATCCATATGT
66 CGAGTTCGGATGTTCGCATCCATATGT
* * *
20619751 GAACTCAGACTCAACTCAACGAGTCCGGATGTTTGCATCCATAAGTGAACTCGGGCTCAAATCAA
1 GAACTCAGACTCAACTCAACGAGTCCGGACGTTAGCATCCATAAGTGAACTCGGACTCAAATCAA
20619816 CGAGTTCGGATGT
66 CGAGTTCGGATGT
20619829 CCAAATATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
92 72 1.00
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (92 bp):
GAACTCAGACTCAACTCAACGAGTCCGGACGTTAGCATCCATAAGTGAACTCGGACTCAAATCAA
CGAGTTCGGATGTTCGCATCCATATGT
Found at i:20621351 original size:6 final size:6
Alignment explanation
Indices: 20621342--20621367 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
20621332 AAATAAAAGG
20621342 AAAATT AAAATT AAAATT AAAATT AA
1 AAAATT AAAATT AAAATT AAAATT AA
20621368 TAATAATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (6 bp):
AAAATT
Found at i:20626067 original size:40 final size:40
Alignment explanation
Indices: 20625986--20626168 Score: 289
Period size: 40 Copynumber: 4.6 Consensus size: 40
20625976 TATTCGGATG
*
20625986 ATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
20626027 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
20626067 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
20626107 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
20626147 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
20626169 TACTTGGGTT
Statistics
Matches: 134, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
39 14 0.10
40 94 0.70
41 26 0.19
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:20636214 original size:22 final size:22
Alignment explanation
Indices: 20636188--20636231 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
20636178 GAAAATAATC
20636188 AAAATTAATCAAAATTAATTAT
1 AAAATTAATCAAAATTAATTAT
* *
20636210 AAAATTAATTAAAATTCATTAT
1 AAAATTAATCAAAATTAATTAT
20636232 GTTAATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAATTAATCAAAATTAATTAT
Found at i:20636230 original size:10 final size:10
Alignment explanation
Indices: 20636179--20636230 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
20636169 AAATCTATCG
*
20636179 AAAA-TAATC
1 AAAATTAATT
*
20636188 AAAATTAATC
1 AAAATTAATT
20636198 AAAATTAATTAT
1 AAAATTAA-T-T
20636210 AAAATTAATT
1 AAAATTAATT
*
20636220 AAAATTCATT
1 AAAATTAATT
20636230 A
1 A
20636231 TGTTAATAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
9 4 0.11
10 24 0.63
11 2 0.05
12 8 0.21
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.35
Consensus pattern (10 bp):
AAAATTAATT
Found at i:20637453 original size:30 final size:30
Alignment explanation
Indices: 20637419--20637481 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
20637409 TTCATTCAAA
20637419 TAGCATAAATTGTCAATTCAAAATTTATTC
1 TAGCATAAATTGTCAATTCAAAATTTATTC
20637449 TAGCATAAATTGTCAATTCAAAATTTATTC
1 TAGCATAAATTGTCAATTCAAAATTTATTC
20637479 TAG
1 TAG
20637482 TACCATATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.40, C:0.13, G:0.08, T:0.40
Consensus pattern (30 bp):
TAGCATAAATTGTCAATTCAAAATTTATTC
Found at i:20639310 original size:22 final size:22
Alignment explanation
Indices: 20639285--20639327 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
20639275 CCAGGGAAGA
20639285 AAATAAAGAAT-AGAAGAAATTG
1 AAATAAAGAATGAGAA-AAATTG
*
20639307 AAATAGAGAATGAGAAAAATT
1 AAATAAAGAATGAGAAAAATT
20639328 TTCTTTAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.63, C:0.00, G:0.19, T:0.19
Consensus pattern (22 bp):
AAATAAAGAATGAGAAAAATTG
Found at i:20642866 original size:18 final size:18
Alignment explanation
Indices: 20642829--20642866 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
20642819 GTTACATTAA
*
20642829 TTCCCTTTCCCTTTCTCT
1 TTCCCTTTCCCTTTCGCT
20642847 TTCCCTTTTCCC-TTCGCT
1 TTCCC-TTTCCCTTTCGCT
20642865 TT
1 TT
20642867 TCTTTTTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.00, C:0.42, G:0.03, T:0.55
Consensus pattern (18 bp):
TTCCCTTTCCCTTTCGCT
Found at i:20643495 original size:104 final size:103
Alignment explanation
Indices: 20643311--20643497 Score: 243
Period size: 104 Copynumber: 1.8 Consensus size: 103
20643301 ATGAGCAATA
* * * *
20643311 GACATGGGCATGTGTCTAGCTATGTAACTTACTATTTGTGATTTAGGACCACACGGCTAGGGACA
1 GACATGGGCATGTGTCTAGCTATGTAACTCACTATTTATGATTTAGAACCACACGACTAGGGACA
*
20643376 TGGGTGTGTGCCCAGGCCATATGAGTCATACAAGCAAG
66 TAGGTGTGTGCCCAGGCCATATGAGTCATACAAGCAAG
* * * *
20643414 GACATGGGCGTGTGTCTAGGCTGTGTAACTCACTATTTATGTTTTATAACCACACAGAC-AGAGG
1 GACATGGGCATGTGTCTA-GCTATGTAACTCACTATTTATGATTTAGAACCACAC-GACTAG-GG
*
20643478 ACATAGGTGTGT-TCCAGGCC
63 ACATAGGTGTGTGCCCAGGCC
20643498 GTGTGGCATA
Statistics
Matches: 71, Mismatches: 10, Indels: 5
0.83 0.12 0.06
Matches are distributed among these distances:
103 17 0.24
104 39 0.55
105 15 0.21
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (103 bp):
GACATGGGCATGTGTCTAGCTATGTAACTCACTATTTATGATTTAGAACCACACGACTAGGGACA
TAGGTGTGTGCCCAGGCCATATGAGTCATACAAGCAAG
Found at i:20645459 original size:48 final size:48
Alignment explanation
Indices: 20645312--20645543 Score: 170
Period size: 48 Copynumber: 4.9 Consensus size: 48
20645302 TTAGGGTTAT
* * * * *
20645312 ATACAATCCCATGTAAGACCATGTTTGGAACATGGCTTTGGCATCGAT
1 ATACGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAC
*** ** * * *
20645360 ATGTAATTTCATGTAAGACCATAG-CTAGG-C-T---ATCGGCATCGAT
1 ATACGATCCCATGTAAGACCAT-GTCTGGGACATGGCATTGGCATCGAC
** *
20645403 ATGTGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCGAC
1 ATACGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAC
* * * *
20645451 CTACGATCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCATCGAT
1 ATACGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAC
** * * ** *
20645499 ATGTGATCCCATGTAAAACCATATCCAGGATATGGCATTGGCATC
1 ATACGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
20645544 CTACCATGTG
Statistics
Matches: 144, Mismatches: 33, Indels: 14
0.75 0.17 0.07
Matches are distributed among these distances:
42 1 0.01
43 32 0.22
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 106 0.74
49 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (48 bp):
ATACGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAC
Found at i:20646964 original size:21 final size:21
Alignment explanation
Indices: 20646940--20646979 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
20646930 TGTGACCCTG
*
20646940 TTTCATGAAAATTTTCTAAGT
1 TTTCACGAAAATTTTCTAAGT
* *
20646961 TTTCCCGAAAGTTTTCTAA
1 TTTCACGAAAATTTTCTAA
20646980 AGTTCTCGGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.15, G:0.10, T:0.45
Consensus pattern (21 bp):
TTTCACGAAAATTTTCTAAGT
Found at i:20650242 original size:56 final size:56
Alignment explanation
Indices: 20650171--20650308 Score: 159
Period size: 56 Copynumber: 2.4 Consensus size: 56
20650161 CCCGTGTCCG
* * * *
20650171 TGCCTGTGTGGGTATACTAACTTGTGACACACGGCCAAACCACACGTCCGTGTGCTA
1 TGCC-GTGTGAGTATACTGACTTGTGACACACGGCCAAACCACACATCCGTATGCTA
* * * * *
20650228 TGCCGTGTGAGTATACTGACTTGGGTCACACGGCCAAGCTACACATCTGTATGCTA
1 TGCCGTGTGAGTATACTGACTTGTGACACACGGCCAAACCACACATCCGTATGCTA
** *
20650284 AACCGTGTGAGCATACTGACTTGTG
1 TGCCGTGTGAGTATACTGACTTGTG
20650309 CTCTTTAAAG
Statistics
Matches: 68, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
56 64 0.94
57 4 0.06
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.26
Consensus pattern (56 bp):
TGCCGTGTGAGTATACTGACTTGTGACACACGGCCAAACCACACATCCGTATGCTA
Found at i:20651462 original size:25 final size:24
Alignment explanation
Indices: 20651434--20651487 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 24
20651424 GCTAAATAAT
* *
20651434 GGTAAGCTCATACGAGTTGAGTATC
1 GGTAAGCTCATAAGAGCTGAG-ATC
20651459 GGTAAGCTCATAAGAGCTGAGATC
1 GGTAAGCTCATAAGAGCTGAGATC
20651483 GGTAA
1 GGTAA
20651488 CCCTAGTGAC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 8 0.30
25 19 0.70
ACGTcount: A:0.31, C:0.15, G:0.30, T:0.24
Consensus pattern (24 bp):
GGTAAGCTCATAAGAGCTGAGATC
Found at i:20653851 original size:26 final size:26
Alignment explanation
Indices: 20653815--20653868 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
20653805 GCCAACACTA
20653815 GTGAACGTTTTGTCACTATCTCATGT
1 GTGAACGTTTTGTCACTATCTCATGT
20653841 GTGAACGTTTTGTCACTATCTCATGT
1 GTGAACGTTTTGTCACTATCTCATGT
20653867 GT
1 GT
20653869 TAATCATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.19, C:0.19, G:0.20, T:0.43
Consensus pattern (26 bp):
GTGAACGTTTTGTCACTATCTCATGT
Found at i:20655087 original size:29 final size:29
Alignment explanation
Indices: 20655050--20655112 Score: 117
Period size: 29 Copynumber: 2.2 Consensus size: 29
20655040 TAACCATAGT
20655050 TATAACTTTATCCTTTTTAAGATTGATTA
1 TATAACTTTATCCTTTTTAAGATTGATTA
*
20655079 TATAACTTTGTCCTTTTTAAGATTGATTA
1 TATAACTTTATCCTTTTTAAGATTGATTA
20655108 TATAA
1 TATAA
20655113 TGCTATATTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.32, C:0.10, G:0.08, T:0.51
Consensus pattern (29 bp):
TATAACTTTATCCTTTTTAAGATTGATTA
Found at i:20655314 original size:29 final size:29
Alignment explanation
Indices: 20655272--20655331 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
20655262 TTATACATTT
20655272 CTCAAGCATGTATAGAATTGAACTCCAAA
1 CTCAAGCATGTATAGAATTGAACTCCAAA
20655301 CTCAAGCATGTATAGAATTGAACTCCAAA
1 CTCAAGCATGTATAGAATTGAACTCCAAA
20655330 CT
1 CT
20655332 AACCATTGCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.40, C:0.22, G:0.13, T:0.25
Consensus pattern (29 bp):
CTCAAGCATGTATAGAATTGAACTCCAAA
Found at i:20656977 original size:20 final size:20
Alignment explanation
Indices: 20656932--20656983 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
20656922 TAATTTTAAA
*
20656932 ATTTATTTTCATTTATCTTT
1 ATTTATTTTTATTTATCTTT
*
20656952 AATTATTTTTATTTAT-TTGT
1 ATTTATTTTTATTTATCTT-T
20656972 ATTTATCTTTTA
1 ATTTAT-TTTTA
20656984 GAATTTCATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 2 0.07
20 20 0.74
21 5 0.19
ACGTcount: A:0.23, C:0.06, G:0.02, T:0.69
Consensus pattern (20 bp):
ATTTATTTTTATTTATCTTT
Found at i:20659687 original size:12 final size:12
Alignment explanation
Indices: 20659660--20659695 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
20659650 TTTGAAACGA
*
20659660 TTTATTTTAATAT
1 TTTATTTT-ATTT
20659673 TTTATTTTATTT
1 TTTATTTTATTT
20659685 TTTATTTTATT
1 TTTATTTTATT
20659696 AGGATAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 14 0.64
13 8 0.36
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (12 bp):
TTTATTTTATTT
Found at i:20659690 original size:17 final size:18
Alignment explanation
Indices: 20659660--20659695 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
20659650 TTTGAAACGA
20659660 TTTATTTTAATATTTTAT
1 TTTATTTTAATATTTTAT
*
20659678 TTTATTTT-TTATTTTAT
1 TTTATTTTAATATTTTAT
20659695 T
1 T
20659696 AGGATAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTATTTTAATATTTTAT
Found at i:20661507 original size:27 final size:26
Alignment explanation
Indices: 20661459--20661532 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 26
20661449 TCGAAAACAC
*
20661459 CGCAAAATGTAAAACAACAGCGGCGTTT
1 CGCAAAA-GTAAAACAATAGCGGCG-TT
* *
20661487 CGCAAAAGTAAAGCAATAGCGGTGTT
1 CGCAAAAGTAAAACAATAGCGGCGTT
*
20661513 CGCCAAAGGTAAAACAATAG
1 CG-CAAAAGTAAAACAATAG
20661533 TGGCTTTACA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
26 4 0.10
27 29 0.73
28 7 0.17
ACGTcount: A:0.42, C:0.19, G:0.23, T:0.16
Consensus pattern (26 bp):
CGCAAAAGTAAAACAATAGCGGCGTT
Found at i:20667984 original size:6 final size:6
Alignment explanation
Indices: 20667973--20667999 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
20667963 ATAATTTAAT
20667973 AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAA
20668000 ACATATAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:20668033 original size:9 final size:9
Alignment explanation
Indices: 20668019--20668095 Score: 111
Period size: 9 Copynumber: 8.6 Consensus size: 9
20668009 TTTATACAAA
20668019 TAATTCGGT
1 TAATTCGGT
20668028 TAATTCGGT
1 TAATTCGGT
*
20668037 TAATTTGGT
1 TAATTCGGT
20668046 TAATTC-GT
1 TAATTCGGT
20668054 GTAATTCGGT
1 -TAATTCGGT
**
20668064 TAATTCAAT
1 TAATTCGGT
20668073 TAATTCGGT
1 TAATTCGGT
20668082 TAATTCGGT
1 TAATTCGGT
20668091 TAATT
1 TAATT
20668096 TTATACTTAT
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
8 2 0.03
9 56 0.93
10 2 0.03
ACGTcount: A:0.26, C:0.09, G:0.18, T:0.47
Consensus pattern (9 bp):
TAATTCGGT
Found at i:20671675 original size:3 final size:3
Alignment explanation
Indices: 20671661--20671742 Score: 73
Period size: 3 Copynumber: 27.7 Consensus size: 3
20671651 ATTCCTTAGT
* * *
20671661 TTA TTA TCA TTA TTA TT- TTA TCA TT- TT- TTA TGTA TTTA TCTA -CA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA -TTA T-TA TTA
*
20671705 TTA TTA TTA TTA TTA TTA TTA TTG TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
20671743 GTATTTATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 12
0.76 0.09 0.14
Matches are distributed among these distances:
2 7 0.11
3 51 0.78
4 6 0.09
5 1 0.02
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:20671750 original size:15 final size:15
Alignment explanation
Indices: 20671705--20671751 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
20671695 TTTATCTACA
20671705 TTATTATTA-T-TA-
1 TTATTATTATTGTAT
20671717 TTATTATTATTGT-T
1 TTATTATTATTGTAT
20671731 ATTATTATTATTGTAT
1 -TTATTATTATTGTAT
20671747 TTATT
1 TTATT
20671752 TTTGAACACA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
12 9 0.30
13 1 0.03
14 1 0.03
15 18 0.60
16 1 0.03
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.68
Consensus pattern (15 bp):
TTATTATTATTGTAT
Found at i:20672454 original size:18 final size:18
Alignment explanation
Indices: 20672431--20672466 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
20672421 TGTGTATTAT
20672431 TTATTTAAAATTGTTTTA
1 TTATTTAAAATTGTTTTA
20672449 TTATTTAAAATTGTTTTA
1 TTATTTAAAATTGTTTTA
20672467 GTCCCCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (18 bp):
TTATTTAAAATTGTTTTA
Found at i:20676246 original size:22 final size:22
Alignment explanation
Indices: 20676220--20676264 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
20676210 TTAGTCATAT
20676220 AATA-AATT-ATTAATATAATA
1 AATATAATTCATTAATATAATA
* *
20676240 AATATAATTCATTATTTTAATA
1 AATATAATTCATTAATATAATA
20676262 AAT
1 AAT
20676265 TATTTAACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 4 0.19
21 4 0.19
22 13 0.62
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (22 bp):
AATATAATTCATTAATATAATA
Found at i:20676892 original size:14 final size:14
Alignment explanation
Indices: 20676873--20676911 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
20676863 TCAGCAAAAT
20676873 AAATCATTTTCTAG
1 AAATCATTTTCTAG
*
20676887 AAATCATTTTCTGG
1 AAATCATTTTCTAG
*
20676901 AAGTCATTTTC
1 AAATCATTTTC
20676912 AGTGAAGCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.31, C:0.15, G:0.10, T:0.44
Consensus pattern (14 bp):
AAATCATTTTCTAG
Found at i:20683719 original size:32 final size:33
Alignment explanation
Indices: 20683677--20683742 Score: 82
Period size: 32 Copynumber: 2.0 Consensus size: 33
20683667 TCAGTAAAAC
* * *
20683677 TGGGCTCACAC-GCCCGTGTTGGTCTA-CTCGTG
1 TGGGCCCACACAGCCCG-ATTGGTCGAGCTCGTG
20683709 TGGGCCCACACAGCCCGATTGGTCGAGCTCGTG
1 TGGGCCCACACAGCCCGATTGGTCGAGCTCGTG
20683742 T
1 T
20683743 CTAGCACATT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.12, C:0.32, G:0.32, T:0.24
Consensus pattern (33 bp):
TGGGCCCACACAGCCCGATTGGTCGAGCTCGTG
Found at i:20690012 original size:40 final size:40
Alignment explanation
Indices: 20689938--20690159 Score: 313
Period size: 40 Copynumber: 5.6 Consensus size: 40
20689928 AACCCAAGTA
** * *
20689938 CCTTCGGGGTTTAG-CCGGATATA-TTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* * *
20689977 CCTTCGGGTCTTAGCCCAGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
20690017 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
20690057 CCTTCGGGACTTAGCCCAGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
20690097 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
20690137 ACTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
20690160 CATTCGAATA
Statistics
Matches: 165, Mismatches: 16, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
39 12 0.07
40 150 0.91
41 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:20690070 original size:80 final size:80
Alignment explanation
Indices: 20689938--20690159 Score: 347
Period size: 80 Copynumber: 2.8 Consensus size: 80
20689928 AACCCAAGTA
** * * * *
20689938 CCTTCGGGGTTTAG-CCGGATATATTAACTCGCACAAATGCCTTCGGGTCTTAGCCCAGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCAGATATAG
20690002 TCAATAGCACAAAAG
66 TCAATAGCACAAAAG
20690017 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCAGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCAGATATAG
*
20690082 TCAATAGCACAAATG
66 TCAATAGCACAAAAG
* * *
20690097 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAGACTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCAGATAT
20690160 CATTCGAATA
Statistics
Matches: 132, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
79 12 0.09
80 120 0.91
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCAGATATAG
TCAATAGCACAAAAG
Found at i:20695870 original size:48 final size:48
Alignment explanation
Indices: 20695767--20696177 Score: 203
Period size: 46 Copynumber: 8.7 Consensus size: 48
20695757 TTATTTGTGT
* *
20695767 GCTAGTGTAAGA-CATGTCCGGGACAT-GCATCGGCCACA-TTA-A-GAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-G--ACATTTATACAAGA
* * * *
20695813 GCCAATGTAAGACCATGTCTGGAACATGGCATCAACATTTATACAAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTTATACAAGA
* * * * ** * *
20695861 GCTAGTGTAAGA-CATGTTTGGGACAT-GCACCGGCCTCGAGA-TAGAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTTATACAAG-A
* * *
20695907 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-----TACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTTATACAAGA
* * ** * *
20695948 TGTGTCAGTGTAAGACCATGTCTGGGACACGGCATC-AGCACGTATAGAAGT
1 -G-CT-AGTGTAAGACCATGTCTGGGACATGGCATCGA-CATTTATACAAGA
***
20695999 G-TCAGTGTAAGACCATGTCTGGGACATGGCATCGACATGTATATGTGAGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGACAT-T-TATACAAGA
* ** * ** * *
20696049 GCTAGTGTAAGACTATGTCTGGGACATGGTGTCGACCTCAATTTCAATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTTA-TACAAGA
* * ** *
20696098 G-TCAGTGTAAGACCATGCCTGGGACATGGCATCGAC-TTGATGGATGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGACATTTATACAAGA
* *
20696145 GCCAGTGTAAGACCATGTCTGGGGCATGGCATC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC
20696178 CGCATCATAA
Statistics
Matches: 280, Mismatches: 60, Indels: 49
0.72 0.15 0.13
Matches are distributed among these distances:
41 2 0.01
42 3 0.01
44 9 0.03
45 18 0.06
46 59 0.21
47 57 0.20
48 55 0.20
49 34 0.12
50 38 0.14
51 5 0.02
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTTATACAAGA
Found at i:20696133 original size:49 final size:50
Alignment explanation
Indices: 20695951--20696177 Score: 202
Period size: 48 Copynumber: 4.7 Consensus size: 50
20695941 TACGAGATGT
* * * *
20695951 GTCAGTGTAAGACCATGTCTGGGACACGGCATC-AGCACGTATA-G-AAGT
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CATGCATATGTAAGA
* *
20695999 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGACATGTATATGTGAGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGACATGCATATGTAAGA
* ** * * *
20696049 G-CTAGTGTAAGACTATGTCTGGGACATGGTGTCGACCT-CA-ATTTCAATA
1 GTC-AGTGTAAGACCATGTCTGGGACATGGCATCGACATGCATATGT-AAGA
* * * *
20696098 GTCAGTGTAAGACCATGCCTGGGACATGGCATCGACTTG---ATGGATGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGACATGCATATGTAAGA
* *
20696145 GCCAGTGTAAGACCATGTCTGGGGCATGGCATC
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATC
20696178 CGCATCATAA
Statistics
Matches: 148, Mismatches: 24, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
47 32 0.22
48 44 0.30
49 37 0.25
50 35 0.24
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (50 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGCATCGACATGCATATGTAAGA
Found at i:20698298 original size:40 final size:40
Alignment explanation
Indices: 20698086--20698291 Score: 353
Period size: 40 Copynumber: 5.2 Consensus size: 40
20698076 AACCCAAGTA
* *
20698086 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
20698125 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
20698165 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
20698205 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
20698245 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
20698285 CCTTCGG
1 CCTTCGG
20698292 ATCTTAGTCC
Statistics
Matches: 159, Mismatches: 6, Indels: 3
0.95 0.04 0.02
Matches are distributed among these distances:
39 13 0.08
40 145 0.91
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:20709628 original size:79 final size:81
Alignment explanation
Indices: 20709492--20709676 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
20709482 TTGAATGATG
*
20709492 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
20709556 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
20709571 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
20709633 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
20709651 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
20709677 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:20709690 original size:40 final size:40
Alignment explanation
Indices: 20709493--20709676 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
20709483 TGAATGATGT
* * * *
20709493 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
20709533 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
20709573 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
20709611 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
20709652 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
20709677 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:20709698 original size:79 final size:79
Alignment explanation
Indices: 20709545--20709709 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
20709535 GGACTAAGAT
* **
20709545 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
20709610 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
20709624 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
20709687 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
20709703 CCGAAGG
1 CCGAAGG
20709710 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:20735843 original size:40 final size:40
Alignment explanation
Indices: 20735797--20736025 Score: 306
Period size: 40 Copynumber: 5.8 Consensus size: 40
20735787 TGGTATTTAA
* * *
20735797 CCGGATATAGCT-ACTCGCTCAAATGCCTTTGGGACTGAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
20735837 CCGGATATAGTAGCTCGCAC-AATGCCTTC-GGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
20735875 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
20735915 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTGGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
20735955 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
20735995 CCGGA-ATTAGTCACTAGCACAAATGCCTTCG
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCG
20736026 TTATCATCCG
Statistics
Matches: 174, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
38 27 0.16
39 19 0.11
40 128 0.74
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:20743894 original size:40 final size:40
Alignment explanation
Indices: 20743832--20744076 Score: 309
Period size: 40 Copynumber: 6.2 Consensus size: 40
20743822 AAACCAAGTA
* * **
20743832 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGTTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
20743871 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
20743911 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
20743951 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
20743991 CCTTTGGGACTTAGCCCGGGAT-TAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCC-GGATATAGTAACTCGCACAAATG
* * *
20744031 CCTTCGGGACTTAGCCC-GAAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
20744071 CCTTCG
1 CCTTCG
20744077 TTATCATCCA
Statistics
Matches: 184, Mismatches: 17, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
38 2 0.01
39 13 0.07
40 165 0.90
41 4 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:20752594 original size:118 final size:118
Alignment explanation
Indices: 20752386--20752624 Score: 451
Period size: 118 Copynumber: 2.0 Consensus size: 118
20752376 AACAAGAACT
20752386 ACAGAAGCATCCGGCGTGGTTAAATTGGCATAGAACTCTCATATTAAATCCTCTTCAGGCAATGA
1 ACAGAAGCATCCGGCGTGGTTAAATTGGCATAGAACTCTCATATTAAATCCTCTTCAGGCAATGA
20752451 TCGTGCGTCACAAAATTGATTCCAACTTAAGGCCTTAATTATTTTCTAAATTG
66 TCGTGCGTCACAAAATTGATTCCAACTTAAGGCCTTAATTATTTTCTAAATTG
* * *
20752504 ACAGAAGCATCTGGCGTGGTTAAATTGGCATAGAACTCTGATATTAATTCCTCTTCAGGCAATGA
1 ACAGAAGCATCCGGCGTGGTTAAATTGGCATAGAACTCTCATATTAAATCCTCTTCAGGCAATGA
20752569 TCGTGCGTCACAAAATTGATTCCAACTTAAGGCCTTAATTATTTTCTAAATTG
66 TCGTGCGTCACAAAATTGATTCCAACTTAAGGCCTTAATTATTTTCTAAATTG
20752622 ACA
1 ACA
20752625 AAGGCATAAT
Statistics
Matches: 118, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
118 118 1.00
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (118 bp):
ACAGAAGCATCCGGCGTGGTTAAATTGGCATAGAACTCTCATATTAAATCCTCTTCAGGCAATGA
TCGTGCGTCACAAAATTGATTCCAACTTAAGGCCTTAATTATTTTCTAAATTG
Found at i:20754514 original size:43 final size:42
Alignment explanation
Indices: 20754453--20754574 Score: 138
Period size: 43 Copynumber: 2.8 Consensus size: 42
20754443 AACACATATA
* * * * *
20754453 GATGCCACTGTCCCAGACAAGGTATTACACGTAATC-GATTAAC
1 GATGCCA-TGTCCCAGACATGGTCTTACAAGTAATCTCAAT-AC
20754496 GATGCCTATGTCCCAGACATGGTCTTACAAGTAATCTCAATAC
1 GATGCC-ATGTCCCAGACATGGTCTTACAAGTAATCTCAATAC
* *
20754539 AATGCCAATGTCCCAGACATGGTCTTACATGTAATC
1 GATGCC-ATGTCCCAGACATGGTCTTACAAGTAATC
20754575 ACATCTCGAT
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
43 66 0.96
44 3 0.04
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (42 bp):
GATGCCATGTCCCAGACATGGTCTTACAAGTAATCTCAATAC
Found at i:20761026 original size:49 final size:50
Alignment explanation
Indices: 20760947--20761092 Score: 186
Period size: 51 Copynumber: 2.9 Consensus size: 50
20760937 GTAGCCAAAC
* * * *
20760947 TATCTGGTACGCATAGTAGCCTACAGTTAGTACTACACATGCGACCAA-T
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAGT
* * * *
20760996 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAAGT
* *
20761047 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC
20761093 TAGCTACATA
Statistics
Matches: 81, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
49 37 0.46
50 4 0.05
51 40 0.49
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (50 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAGT
Found at i:20761935 original size:30 final size:29
Alignment explanation
Indices: 20761899--20761957 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
20761889 TCCTTAACTC
20761899 AAACTTTGGAAAATTTACAATTTTGTCCCT
1 AAACTTTGGAAAATTTACAATTTT-TCCCT
* * * *
20761929 AAACTTTTGCATATTTACACTTTTTCCCT
1 AAACTTTGGAAAATTTACAATTTTTCCCT
20761958 TAGGCTCGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 5 0.20
30 20 0.80
ACGTcount: A:0.29, C:0.20, G:0.07, T:0.44
Consensus pattern (29 bp):
AAACTTTGGAAAATTTACAATTTTTCCCT
Found at i:20762576 original size:30 final size:30
Alignment explanation
Indices: 20762540--20762600 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
20762530 TCCTTAACTC
* *
20762540 AAACTTTGGCAAATTTACAATTTTGTCCCT
1 AAACTTTGACAAATTTACAATTTTGCCCCT
* * *
20762570 AAACTTTTACATATTTACACTTTTGCCCCT
1 AAACTTTGACAAATTTACAATTTTGCCCCT
20762600 A
1 A
20762601 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.41
Consensus pattern (30 bp):
AAACTTTGACAAATTTACAATTTTGCCCCT
Done.