Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 67 of 362
Found at i:20763040 original size:641 final size:640
Alignment explanation
Indices: 20761819--20763737 Score: 3415
Period size: 641 Copynumber: 3.0 Consensus size: 640
20761809 TCATTCTAGG
* *
20761819 TTCAAATCCCGTTTTCTGGGATCTAAAACATTATATTTTACTTATTTAATTAATGTACTATTCAA
1 TTCAAATCTCGTTTTCTGGGATCTAAAACATCATATTTTACTTATTTAATTAATGTACTATTCAA
*
20761884 AACAGTCCTTAACTCAAACTTTGGAAAATTTACAATTTTGTCCCTAAACTTTTGCATATTTACAC
66 AACAGTCCTTAACTCAAACTTTGGCAAATTTACAATTTTGTCCCTAAACTTTTGCATATTTACAC
* * *
20761949 TTTTTCCCTTAGGCTCGGAAATTAAACTTCATCCCTTATTCTTATGTTTTATGACATGCTGATCA
131 TTTTGCCCCTAGGCTCGGGAATTAAACTTCATCCCTTATTCTTATGTTTTATGACATGCTGATCA
20762014 CTTTTCTCTTCTATGGAAACATCAAATTCTCACTCTAACATATACTTATGACTATTAGGTATTTT
196 CTTTTCTCTTCTATGGAAACATCAAATTCTCACTCTAACATATACTTATGACTATTAGGTATTTT
*
20762079 TACCGATTAAGCCCTTTTACTCGTTTTCACTAAAAACCGAGTAGCACAAGTTGTCTAACATAATT
261 TACCGATTAAGCCC-TTTACTCGTTTTCACTCAAAACCGAGTAGCACAAGTTGTCTAACATAATT
*
20762144 TAAAACCTTATATTCTATCATAAAACATCAAAATAAACACATTTCACCTATGGGTATTTTTCCAA
325 TAAAACCTCATATTCTATCATAAAACATCAAAATAAACACATTTCACCTATGGGTATTTTTCCAA
*
20762209 ATATGAACCCTAGCTTAAATTATTGCTAGAATAAGCTTAATCAAATTACCGGGATTCTAAAAACG
390 ATATGAACCCTAGCTTAAATTATTGCTAGAATAAGCTTAATCAAATTACCGGGATTCAAAAAACG
* *
20762274 TAAAGAACTTGAAAAATGGGGTTAGAACAGACTTACGATTGAGCTTGGAAAGCTTGAAAACCCTA
455 TAAAGAACTTGAAAAACGGGGTTAGAACAGACTTACTATTGAGCTTGGAAAGCTTGAAAACCCTA
20762339 GCCATGGCTTCCCCCATGCTAATTTCGGCCTCCATGAAAAAGATGAGTCAATTTTGGCTTTATTT
520 GCCATGGCTTCCCCCATGCTAATTTCGGCCTCCATGAAAAAGATGAGTCAATTTTGGCTTTATTT
* *
20762404 TCCCTTTTTATCTCTTTTAATTACCGAATGACCAAAATGCCATTCCTTACTAAACT
585 TCCCTTTTTATTTCTTTTAATTACCAAATGACCAAAATGCCATTCCTTACTAAACT
20762460 TTCAAATCTCGTTTTCTGGGATCTAAAACATCATATTTTACTTATTTAATTAATGTACTATTCAA
1 TTCAAATCTCGTTTTCTGGGATCTAAAACATCATATTTTACTTATTTAATTAATGTACTATTCAA
* *
20762525 GACAGTCCTTAACTCAAACTTTGGCAAATTTACAATTTTGTCCCTAAACTTTTACATATTTACAC
66 AACAGTCCTTAACTCAAACTTTGGCAAATTTACAATTTTGTCCCTAAACTTTTGCATATTTACAC
*
20762590 TTTTGCCCCTAGGCTCGGGAATTAAACTCCATCCCTTATTCTTATGTTTTATGACATGCTGATCA
131 TTTTGCCCCTAGGCTCGGGAATTAAACTTCATCCCTTATTCTTATGTTTTATGACATGCTGATCA
*
20762655 CTTTTCTCTTCTATGGCAACATCAAATTCTCACTCTAACATATACTTATGACTATTAGGTATTTT
196 CTTTTCTCTTCTATGGAAACATCAAATTCTCACTCTAACATATACTTATGACTATTAGGTATTTT
*
20762720 TACCGATTAAGCCCTTCTACTCGTTTTCACTCAAAATCGAGTAGCACAAGTTGTCTAACATAATT
261 TACCGATTAAGCCCTT-TACTCGTTTTCACTCAAAACCGAGTAGCACAAGTTGTCTAACATAATT
*
20762785 TAAAACCTCATATTCTATCATAAAACATCAAATTAAACACATTTCACCTATGGGTATTTTTCCAA
325 TAAAACCTCATATTCTATCATAAAACATCAAAATAAACACATTTCACCTATGGGTATTTTTCCAA
*
20762850 ATATGAACCCTAGCTTAAATTATTGCTAGAATAAGCTTAATCAAATTACCGGGATTCCAAAAACG
390 ATATGAACCCTAGCTTAAATTATTGCTAGAATAAGCTTAATCAAATTACCGGGATTCAAAAAACG
20762915 TAAAGAACTTGAAAAACGGGGTTAGAACAGACTTACTATTGAGCTTGGAAAGCTTGAAAACCCTA
455 TAAAGAACTTGAAAAACGGGGTTAGAACAGACTTACTATTGAGCTTGGAAAGCTTGAAAACCCTA
* *
20762980 TCCATGGCTTCCCCCATGCTAATTTCGGCCTCCATGGAAAAGATGAGTCAATTTTGGCTTTATTT
520 GCCATGGCTTCCCCCATGCTAATTTCGGCCTCCATGAAAAAGATGAGTCAATTTTGGCTTTATTT
20763045 TCCCTTTTTATTTCTTTTAATTACCAAATGACCAAAATGCCATTCCTTACTAAACT
585 TCCCTTTTTATTTCTTTTAATTACCAAATGACCAAAATGCCATTCCTTACTAAACT
*
20763101 TTCAAATCTCGTTTTCTGAGATCTAAAACATCATATTTTACTTATTTAATTAATGTACTATTCAA
1 TTCAAATCTCGTTTTCTGGGATCTAAAACATCATATTTTACTTATTTAATTAATGTACTATTCAA
* *
20763166 AACAGTCCTGAACTCAAACTTGGGCAAATTTACAATTTTGTCCCTAAACTTTTGCATATTTACAC
66 AACAGTCCTTAACTCAAACTTTGGCAAATTTACAATTTTGTCCCTAAACTTTTGCATATTTACAC
* * *
20763231 TTTTGCCCCTAGGCTCGCGAATTAAACTTCATTCATTATTCTTATGTTTTATGACATGCTGATCA
131 TTTTGCCCCTAGGCTCGGGAATTAAACTTCATCCCTTATTCTTATGTTTTATGACATGCTGATCA
20763296 CTTTTCTCTTCTATGGAAACATCAAATTCTCACTCTAACATATACTTATGACTATTAGGTATTTT
196 CTTTTCTCTTCTATGGAAACATCAAATTCTCACTCTAACATATACTTATGACTATTAGGTATTTT
*
20763361 TACCG----A-----TTACTCGTTTTCACTCAAAACCGAGTAGCACAAGTTGCCTAACATAATTT
261 TACCGATTAAGCCCTTTACTCGTTTTCACTCAAAACCGAGTAGCACAAGTTGTCTAACATAATTT
* *
20763417 AAAACTTCATATTCTATCATAAAACATCAAAATAAACATATTTCACCTATGGGTATTTTTCCAAA
326 AAAACCTCATATTCTATCATAAAACATCAAAATAAACACATTTCACCTATGGGTATTTTTCCAAA
**
20763482 TATGAACCCTAGCTTAAATTATTGCTAGAATAAGCTTAATCAAATTACTAGGATTCAAAAAACGT
391 TATGAACCCTAGCTTAAATTATTGCTAGAATAAGCTTAATCAAATTACCGGGATTCAAAAAACGT
*
20763547 AAAGAACTTGAAAAACGGGGTTAGAACGGACTTACTATTGAGCTTGGAAAGCTTGAAAACCCTAG
456 AAAGAACTTGAAAAACGGGGTTAGAACAGACTTACTATTGAGCTTGGAAAGCTTGAAAACCCTAG
* *
20763612 CCATGGCTTTCCCCATGCTAATTTCGGCCTCCATGAAAAAGATGAGTTAATTTTGGCTTTATTTT
521 CCATGGCTTCCCCCATGCTAATTTCGGCCTCCATGAAAAAGATGAGTCAATTTTGGCTTTATTTT
* *
20763677 CCCTTTTTATTTCTTTTAATTGCTAAATGACCAAAATGCCATTCCTTACTAAACT
586 CCCTTTTTATTTCTTTTAATTACCAAATGACCAAAATGCCATTCCTTACTAAACT
20763732 TTCAAA
1 TTCAAA
20763738 AATTCCATCC
Statistics
Matches: 1231, Mismatches: 46, Indels: 12
0.96 0.04 0.01
Matches are distributed among these distances:
631 355 0.29
632 1 0.00
637 1 0.00
640 2 0.00
641 872 0.71
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.36
Consensus pattern (640 bp):
TTCAAATCTCGTTTTCTGGGATCTAAAACATCATATTTTACTTATTTAATTAATGTACTATTCAA
AACAGTCCTTAACTCAAACTTTGGCAAATTTACAATTTTGTCCCTAAACTTTTGCATATTTACAC
TTTTGCCCCTAGGCTCGGGAATTAAACTTCATCCCTTATTCTTATGTTTTATGACATGCTGATCA
CTTTTCTCTTCTATGGAAACATCAAATTCTCACTCTAACATATACTTATGACTATTAGGTATTTT
TACCGATTAAGCCCTTTACTCGTTTTCACTCAAAACCGAGTAGCACAAGTTGTCTAACATAATTT
AAAACCTCATATTCTATCATAAAACATCAAAATAAACACATTTCACCTATGGGTATTTTTCCAAA
TATGAACCCTAGCTTAAATTATTGCTAGAATAAGCTTAATCAAATTACCGGGATTCAAAAAACGT
AAAGAACTTGAAAAACGGGGTTAGAACAGACTTACTATTGAGCTTGGAAAGCTTGAAAACCCTAG
CCATGGCTTCCCCCATGCTAATTTCGGCCTCCATGAAAAAGATGAGTCAATTTTGGCTTTATTTT
CCCTTTTTATTTCTTTTAATTACCAAATGACCAAAATGCCATTCCTTACTAAACT
Found at i:20763215 original size:30 final size:30
Alignment explanation
Indices: 20763181--20763241 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
20763171 TCCTGAACTC
*
20763181 AAACTTGGGCAAATTTACAATTTTGTCCCT
1 AAACTTGGGCAAATTTACAATTTTGCCCCT
** * *
20763211 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTGGGCAAATTTACAATTTTGCCCCT
20763241 A
1 A
20763242 GGCTCGCGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.39
Consensus pattern (30 bp):
AAACTTGGGCAAATTTACAATTTTGCCCCT
Found at i:20765719 original size:18 final size:18
Alignment explanation
Indices: 20765696--20765731 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
20765686 GAGCACGTAA
20765696 ATATTTTTATTAAATATT
1 ATATTTTTATTAAATATT
20765714 ATATTTTTATTAAATATT
1 ATATTTTTATTAAATATT
20765732 TAGGGAATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
ATATTTTTATTAAATATT
Found at i:20766440 original size:13 final size:13
Alignment explanation
Indices: 20766422--20766448 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
20766412 GAAAATTCAA
20766422 TTATTTTTGTTCC
1 TTATTTTTGTTCC
20766435 TTATTTTTGTTCC
1 TTATTTTTGTTCC
20766448 T
1 T
20766449 AGACCTATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.15, G:0.07, T:0.70
Consensus pattern (13 bp):
TTATTTTTGTTCC
Found at i:20772689 original size:79 final size:81
Alignment explanation
Indices: 20772551--20772735 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
20772541 TTGAATGATG
* * *
20772551 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
20772615 TGTGAGAGATACTA-A
66 TGTGAGAGATACTATA
* * * **
20772630 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
* *
20772692 ATTGTGCGAGTTACTATA
64 ATTGTGAGAGATACTATA
* *
20772710 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
20772736 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 55 0.62
80 33 0.37
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGAGAGATACTATA
Found at i:20772742 original size:40 final size:40
Alignment explanation
Indices: 20772551--20772735 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
20772541 TTGAATGATG
* * * * *
20772551 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
20772591 TCCGGACTAAGAT-CCGAAGGCATTTGTGAGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
20772631 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
20772670 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
20772711 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
20772736 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 34 0.28
40 79 0.65
41 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:20772757 original size:79 final size:79
Alignment explanation
Indices: 20772604--20772768 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
20772594 GGACTAAGAT
* * **
20772604 CCGAAGGCATTTGTGAGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGAGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
20772669 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
20772683 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGAGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
20772746 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
20772762 CCGAAGG
1 CCGAAGG
20772769 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGAGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:20779023 original size:13 final size:13
Alignment explanation
Indices: 20779005--20779031 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
20778995 CTAACATATA
20779005 TAAATCAATTAGT
1 TAAATCAATTAGT
20779018 TAAATCAATTAGT
1 TAAATCAATTAGT
20779031 T
1 T
20779032 GCTGTTTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.41
Consensus pattern (13 bp):
TAAATCAATTAGT
Found at i:20779194 original size:45 final size:45
Alignment explanation
Indices: 20779092--20779209 Score: 139
Period size: 45 Copynumber: 2.6 Consensus size: 45
20779082 TGGCTTGAAG
* * *
20779092 GAAATGATTAAAACCATAGTTGAAAGACACTATGACACTATATCA
1 GAAATGAATAAGACCATAGTTGAAAGACACTATGACACCATATCA
* * *
20779137 AAAATAAATAAGACCATAGTTGAAAGACACTATGGCACCATA-CTA
1 GAAATGAATAAGACCATAGTTGAAAGACACTATGACACCATATC-A
* **
20779182 GAAATGAGTAAGACCATAACTGAAAGAC
1 GAAATGAATAAGACCATAGTTGAAAGAC
20779210 GTTATGTTAT
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
44 1 0.02
45 60 0.98
ACGTcount: A:0.48, C:0.16, G:0.15, T:0.20
Consensus pattern (45 bp):
GAAATGAATAAGACCATAGTTGAAAGACACTATGACACCATATCA
Found at i:20779236 original size:45 final size:45
Alignment explanation
Indices: 20779187--20779360 Score: 161
Period size: 45 Copynumber: 3.9 Consensus size: 45
20779177 TACTAGAAAT
* ** *
20779187 GAGTAAGACCATAACTGAAAGACGTTATGTTATCACGATTCTATC
1 GAGTAAGACCATAGCTGAAAGACGTTATGGCATCACGATTCTAAC
* *
20779232 GAGTAAGACCATAGCTGAAAGATGTTATGGCATCATGATTCTAAC
1 GAGTAAGACCATAGCTGAAAGACGTTATGGCATCACGATTCTAAC
* * * * * * *
20779277 GAGTAAGACCATAGCTAAAAGATGCTATGACATTACGAATCAAAC
1 GAGTAAGACCATAGCTGAAAGACGTTATGGCATCACGATTCTAAC
* * * ** *
20779322 AAACT-AGACCATAGTTGAAAGACACTATGGCAACACGAT
1 -GAGTAAGACCATAGCTGAAAGACGTTATGGCATCACGAT
20779361 GGAAAGTGAA
Statistics
Matches: 105, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
45 103 0.98
46 2 0.02
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.24
Consensus pattern (45 bp):
GAGTAAGACCATAGCTGAAAGACGTTATGGCATCACGATTCTAAC
Found at i:20784085 original size:13 final size:13
Alignment explanation
Indices: 20784067--20784136 Score: 74
Period size: 13 Copynumber: 5.6 Consensus size: 13
20784057 AATAAATTTA
*
20784067 AACCCAAGTACCC
1 AACCCAATTACCC
20784080 AACCC-A--ACCC
1 AACCCAATTACCC
*
20784090 AATCCAATTACCC
1 AACCCAATTACCC
* *
20784103 AAACTAATTACCC
1 AACCCAATTACCC
*
20784116 AACCTAATTACCC
1 AACCCAATTACCC
20784129 AACCCAAT
1 AACCCAAT
20784137 CATAAAAATT
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
10 8 0.16
11 1 0.02
12 1 0.02
13 39 0.80
ACGTcount: A:0.41, C:0.41, G:0.01, T:0.16
Consensus pattern (13 bp):
AACCCAATTACCC
Found at i:20784309 original size:9 final size:9
Alignment explanation
Indices: 20784295--20784355 Score: 86
Period size: 9 Copynumber: 6.7 Consensus size: 9
20784285 TTGAAATCTC
*
20784295 TCAAAATCT
1 TCAAAACCT
20784304 TCAAAACCT
1 TCAAAACCT
*
20784313 TCAAAATCT
1 TCAAAACCT
*
20784322 CCCAAAACCT
1 -TCAAAACCT
20784332 TCAAAACCT
1 TCAAAACCT
20784341 TCAAAACCT
1 TCAAAACCT
20784350 TCAAAA
1 TCAAAA
20784356 GTATCATAGC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
9 39 0.85
10 7 0.15
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (9 bp):
TCAAAACCT
Found at i:20784316 original size:18 final size:18
Alignment explanation
Indices: 20784295--20784355 Score: 95
Period size: 18 Copynumber: 3.3 Consensus size: 18
20784285 TTGAAATCTC
20784295 TCAAAATCTTCAAAACCT
1 TCAAAATCTTCAAAACCT
*
20784313 TCAAAATCTCCCAAAACCT
1 TCAAAATCT-TCAAAACCT
*
20784332 TCAAAACCTTCAAAACCT
1 TCAAAATCTTCAAAACCT
20784350 TCAAAA
1 TCAAAA
20784356 GTATCATAGC
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
18 23 0.59
19 16 0.41
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (18 bp):
TCAAAATCTTCAAAACCT
Found at i:20784320 original size:28 final size:28
Alignment explanation
Indices: 20784288--20784355 Score: 102
Period size: 28 Copynumber: 2.5 Consensus size: 28
20784278 TAAAATTTTG
*
20784288 AAATCTCTCAAAATCTTCAAAACCTTCA
1 AAATCTCTCAAAACCTTCAAAACCTTCA
*
20784316 AAATCTCCCAAAACCTTCAAAACCTTCA
1 AAATCTCTCAAAACCTTCAAAACCTTCA
*
20784344 AAACCT-TCAAAA
1 AAATCTCTCAAAA
20784356 GTATCATAGC
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 5 0.14
28 31 0.86
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.24
Consensus pattern (28 bp):
AAATCTCTCAAAACCTTCAAAACCTTCA
Found at i:20787111 original size:38 final size:38
Alignment explanation
Indices: 20787060--20787159 Score: 110
Period size: 40 Copynumber: 2.6 Consensus size: 38
20787050 ATCATCTCCG
* * * *
20787060 TCCAACCCAACACACCATGTGGGGATAAAATTGACCCA
1 TCCAACCCTACACACCATGTGGGCAGAAAATTAACCCA
* * *
20787098 TCCAGCCCTACACACCAAGTATGAGCAGAAAATTAACCCA
1 TCCAACCCTACACACC-A-TGTGGGCAGAAAATTAACCCA
*
20787138 TCCAACCCTACACACCAAGTGG
1 TCCAACCCTACACACCATGTGG
20787160 TACCGTATAT
Statistics
Matches: 49, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
38 16 0.33
39 2 0.04
40 31 0.63
ACGTcount: A:0.37, C:0.34, G:0.14, T:0.15
Consensus pattern (38 bp):
TCCAACCCTACACACCATGTGGGCAGAAAATTAACCCA
Found at i:20787559 original size:17 final size:17
Alignment explanation
Indices: 20787537--20787570 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
20787527 GTGTGGTTCA
20787537 CCCGTGTGGA-CCACACG
1 CCCGTGT-GACCCACACG
20787554 CCCGTGTGACCCACACG
1 CCCGTGTGACCCACACG
20787571 GCCCAATTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 14 0.88
ACGTcount: A:0.18, C:0.44, G:0.26, T:0.12
Consensus pattern (17 bp):
CCCGTGTGACCCACACG
Found at i:20794705 original size:49 final size:50
Alignment explanation
Indices: 20794649--20794783 Score: 191
Period size: 51 Copynumber: 2.7 Consensus size: 50
20794639 ATCTGGTTCG
20794649 CATAGTAGCCTGCACTTAGTACTACACATGTGACCAA-TTATCCGGTAAA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCAAGTTATCCGGTAAA
* * * * * *
20794698 CATAGTAGCCTTCACTTTGTACTACACACGTGATCGAAGTTATCGGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGA-CCAAGTTATCCGGTAAA
*
20794749 CATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACC
20794784 TCACAATAGA
Statistics
Matches: 73, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
49 30 0.41
50 4 0.05
51 39 0.53
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTGACCAAGTTATCCGGTAAA
Found at i:20797572 original size:15 final size:15
Alignment explanation
Indices: 20797554--20797586 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
20797544 GAAGCCATGA
20797554 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
20797569 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
20797584 ATA
1 ATA
20797587 TGAGAATCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.18
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:20800569 original size:68 final size:64
Alignment explanation
Indices: 20800454--20800703 Score: 233
Period size: 68 Copynumber: 3.8 Consensus size: 64
20800444 ACAGATAGTG
** * * * *
20800454 TGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGTGTACAAGAGAGCTACAAGACATTA
1 TGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTGTACAAGAGAGCTAC--GAGA-TA
20800519 TGA
63 T-A
* *
20800522 TGTAGCTAGGTCACATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGCTACGGGATAT
1 TGTAGCTAGGTCACATGGGTGGTACTGA-GTGTACACCATGT-GTACAAGAGAGCTACGAGATAT
20800585 A
64 A
* * *
20800586 TGTAGCTAGGTCGCATGCGTGGTCCAGGTGAAG-G-ACACCATGTAG-ACAAGAGAGCTACGAGA
1 TGTAGCTAGGTCACATGGGTGGT--A-CTG-AGTGTACACCATGT-GTACAAGAGAGCTACGAGA
*
20800648 TAAA
61 TATA
* *
20800652 T-TGGCTAGGTCACATGGGTGGTACTGAGTGTTCACCATGTGTACAAGAGAGC
1 TGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTGTACAAGAGAGC
20800704 CGAACTATAT
Statistics
Matches: 153, Mismatches: 19, Indels: 25
0.78 0.10 0.13
Matches are distributed among these distances:
61 2 0.01
62 4 0.03
63 19 0.12
64 21 0.14
65 21 0.14
66 34 0.22
67 3 0.02
68 47 0.31
69 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.24
Consensus pattern (64 bp):
TGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTGTACAAGAGAGCTACGAGATATA
Found at i:20803931 original size:49 final size:50
Alignment explanation
Indices: 20803868--20804002 Score: 164
Period size: 51 Copynumber: 2.7 Consensus size: 50
20803858 ATCTGGTTTG
* *
20803868 CATAGTAGCCTGCACTTAGTACTACATATGTGACCAA-TTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCAAGTTATCAGGTACA
* * * * * *
20803917 CGTAGTAGCTTGCACTTAGTACTATACACGTGATCGAAGTTATCAGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGTGA-CCAAGTTATCAGGTACA
* *
20803968 CATAGTAGCCTGTACTTAGTACTACACATGCGACC
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACC
20804003 TCACAATAGA
Statistics
Matches: 69, Mismatches: 15, Indels: 3
0.79 0.17 0.03
Matches are distributed among these distances:
49 28 0.41
50 4 0.06
51 37 0.54
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTGACCAAGTTATCAGGTACA
Found at i:20807211 original size:31 final size:30
Alignment explanation
Indices: 20807169--20807232 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 30
20807159 CCTTTTCATA
*
20807169 TTTTATATTTCATAACACTGGGCCGAAGCC
1 TTTTATATTTCATAACACTGGGCCAAAGCC
**
20807199 TTTTCATATTTCATATTACTGGGCCAAAGCC
1 TTTT-ATATTTCATAACACTGGGCCAAAGCC
20807230 TTT
1 TTT
20807233 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 4 0.13
31 26 0.87
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (30 bp):
TTTTATATTTCATAACACTGGGCCAAAGCC
Found at i:20807500 original size:47 final size:47
Alignment explanation
Indices: 20807447--20807552 Score: 169
Period size: 47 Copynumber: 2.3 Consensus size: 47
20807437 CCTAGCCTCT
* *
20807447 TTTAATAACT-AGGGCAAAAGCCCTTTTAATAACTGGGGCATATGCCC
1 TTTAATAACTGA-AGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
20807494 TTTAATAACTGAAGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGAAGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
20807541 TTTAATAACTGA
1 TTTAATAACTGA
20807553 CTCTCCAACC
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
47 54 0.98
48 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGAAGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:20807501 original size:23 final size:24
Alignment explanation
Indices: 20807440--20807551 Score: 156
Period size: 24 Copynumber: 4.7 Consensus size: 24
20807430 CTAGAGGCCT
* *
20807440 AGCCTCTTTTAATAACTAGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
20807465 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* **
20807489 TGCCC-TTTAATAACTGAAGCATA
1 AGCCCTTTTAATAACTGGGGCATA
20807512 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
20807536 AGCCC-TTTAATAACTG
1 AGCCCTTTTAATAACTG
20807552 ACTCTCCAAC
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
23 31 0.40
24 43 0.55
25 4 0.05
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:20807695 original size:24 final size:24
Alignment explanation
Indices: 20807644--20807762 Score: 161
Period size: 24 Copynumber: 5.0 Consensus size: 24
20807634 GTTTTATCAT
*
20807644 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
20807669 ATAACTAGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
20807693 ATAACTGGGGCATAAGCCC-TTTC
1 ATAACTGGGGCATAAGCCCTTTTA
*
20807716 ATAACTGAGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
20807740 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
20807763 TCACTTCCTC
Statistics
Matches: 83, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
23 21 0.25
24 51 0.61
25 11 0.13
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:20807714 original size:218 final size:218
Alignment explanation
Indices: 20807334--20807761 Score: 811
Period size: 218 Copynumber: 2.0 Consensus size: 218
20807324 ACCATCCGCT
*
20807334 ACTCTCCACCCGTACCAACCAACACACCATGTGGAGATTAACTCAACCCACCCCGCCATAACTCT
1 ACTCTCCAACCGTACCAACCAACACACCATGTGGAGATTAACTCAACCCACCCCGCCATAACTCT
20807399 CCACTGGCAGCATAGTTGTTTTATCATATAACTAGAGGCCTAGCCTCTTTTAATAACTAGGGCAA
66 CCACTGGCAGCATAGTTGTTTTATCATATAACTAGAGGCCTAGCCTCTTTTAATAACTAGGGCAA
*
20807464 AAGCCCTTTTAATAACTGGGGCATATGCCCTTTAATAACTGAAGCATAAGCCCTTTTAATAACTG
131 AAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGAAGCATAAGCCCTTTTAATAACTG
20807529 GGGCATAAGCCCTTTAATAACTG
196 GGGCATAAGCCCTTTAATAACTG
20807552 ACTCTCCAACCGTACCAACCAACACACCATGTGGAGATTAACTCAACCCACCCCGCCATAACTCT
1 ACTCTCCAACCGTACCAACCAACACACCATGTGGAGATTAACTCAACCCACCCCGCCATAACTCT
*
20807617 CCACTGGCAGCATAGTTGTTTTATCATATAACTGGAGGCCTAGCCTCTTTTAATAACTAGGGCAA
66 CCACTGGCAGCATAGTTGTTTTATCATATAACTAGAGGCCTAGCCTCTTTTAATAACTAGGGCAA
* *
20807682 AAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCATAACTGAGGCATAAGCCCTTTTAATAACTG
131 AAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGAAGCATAAGCCCTTTTAATAACTG
20807747 GGGCATAAGCCCTTT
196 GGGCATAAGCCCTTT
20807762 TTCACTTCCT
Statistics
Matches: 205, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
218 205 1.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (218 bp):
ACTCTCCAACCGTACCAACCAACACACCATGTGGAGATTAACTCAACCCACCCCGCCATAACTCT
CCACTGGCAGCATAGTTGTTTTATCATATAACTAGAGGCCTAGCCTCTTTTAATAACTAGGGCAA
AAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGAAGCATAAGCCCTTTTAATAACTG
GGGCATAAGCCCTTTAATAACTG
Found at i:20807733 original size:47 final size:47
Alignment explanation
Indices: 20807669--20807761 Score: 161
Period size: 47 Copynumber: 2.0 Consensus size: 47
20807659 GCCTCTTTTA
20807669 ATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTC
1 ATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTC
*
20807716 ATAACT-GAGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
1 ATAACTAG-GGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
20807762 TTCACTTCCT
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
46 1 0.02
47 43 0.98
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (47 bp):
ATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTC
Found at i:20807837 original size:20 final size:20
Alignment explanation
Indices: 20807812--20807878 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
20807802 TTATGAATAC
20807812 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
20807832 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
20807852 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
20807872 ACCATGT
1 ATCATGT
20807879 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:20807843 original size:11 final size:11
Alignment explanation
Indices: 20807812--20807867 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
20807802 TTATGAATAC
20807812 ATCATGTGCAT
1 ATCATGTGCAT
*
20807823 ATCA--TACAT
1 ATCATGTGCAT
20807832 ATCATGTGCAT
1 ATCATGTGCAT
*
20807843 ATCA--TACAT
1 ATCATGTGCAT
*
20807852 GTCATGTGCAT
1 ATCATGTGCAT
20807863 ATCAT
1 ATCAT
20807868 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:20815462 original size:31 final size:31
Alignment explanation
Indices: 20815424--20815487 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
20815414 CCTTTTCATA
20815424 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
20815455 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
20815486 TT
1 TT
20815488 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:20815744 original size:23 final size:24
Alignment explanation
Indices: 20815680--20815796 Score: 152
Period size: 23 Copynumber: 5.0 Consensus size: 24
20815670 GCTTTATCAT
*
20815680 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
20815705 ATAACTGAGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
20815729 ATAACT-GGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
20815751 ATAACTGGGGCATAAG-CCATTTA
1 ATAACTGGGGCATAAGCCCTTTTA
20815774 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
20815797 CACTTCCTCC
Statistics
Matches: 82, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
22 12 0.15
23 39 0.48
24 20 0.24
25 11 0.13
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:20815870 original size:20 final size:20
Alignment explanation
Indices: 20815845--20815911 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
20815835 TTATTAATAC
20815845 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
20815865 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
20815885 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
20815905 AACATGT
1 ATCATGT
20815912 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:20815876 original size:11 final size:11
Alignment explanation
Indices: 20815845--20815900 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
20815835 TTATTAATAC
20815845 ATCATGTGCAT
1 ATCATGTGCAT
*
20815856 ATCA--TACAT
1 ATCATGTGCAT
20815865 ATCATGTGCAT
1 ATCATGTGCAT
*
20815876 ATCA--TACAT
1 ATCATGTGCAT
*
20815885 GTCATGTGCAT
1 ATCATGTGCAT
20815896 ATCAT
1 ATCAT
20815901 ACATAACATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:20815980 original size:25 final size:25
Alignment explanation
Indices: 20815948--20815995 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
20815938 ATACATAAAC
* *
20815948 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
20815973 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
20815996 CACGTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:20820875 original size:9 final size:9
Alignment explanation
Indices: 20820861--20820892 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
20820851 TTATTTTTGG
*
20820861 TAATTCGGT
1 TAATTCAGT
20820870 TAATTCAGT
1 TAATTCAGT
20820879 TAATTCAGT
1 TAATTCAGT
20820888 TAATT
1 TAATT
20820893 TTTATACTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.47
Consensus pattern (9 bp):
TAATTCAGT
Found at i:20822466 original size:20 final size:20
Alignment explanation
Indices: 20822423--20822466 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
20822413 GACACGGTTG
*
20822423 TGTGATGGCCAAGCAGGCCG
1 TGTGATGGCCAAGCAGGCCA
* *
20822443 TGTGATGGCCAGGTAGGCCA
1 TGTGATGGCCAAGCAGGCCA
20822463 TGTG
1 TGTG
20822467 CGACACATGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.18, C:0.20, G:0.41, T:0.20
Consensus pattern (20 bp):
TGTGATGGCCAAGCAGGCCA
Found at i:20823064 original size:34 final size:34
Alignment explanation
Indices: 20823016--20823085 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
20823006 GCATGACTAT
20823016 TACTAATACAGTGATGGGCTAAGGCCCTAACGCA
1 TACTAATACAGTGATGGGCTAAGGCCCTAACGCA
* *
20823050 TACTGATACAGTGATGGGCTAAGGCCCTACCGCA
1 TACTAATACAGTGATGGGCTAAGGCCCTAACGCA
20823084 TA
1 TA
20823086 TTTGACATTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.21
Consensus pattern (34 bp):
TACTAATACAGTGATGGGCTAAGGCCCTAACGCA
Found at i:20824399 original size:27 final size:27
Alignment explanation
Indices: 20824340--20824399 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
20824330 CGATGGGCCC
**
20824340 AATACCCTCGACCTGTAAAATTATTGA
1 AATACCCTCGACCTGTAAAATTATCCA
*
20824367 AATACCCTCGACTTGTAAAATTA-CCA
1 AATACCCTCGACCTGTAAAATTATCCA
20824393 AAGTACC
1 AA-TACC
20824400 ATTGATTTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 3 0.10
27 26 0.90
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.27
Consensus pattern (27 bp):
AATACCCTCGACCTGTAAAATTATCCA
Found at i:20824453 original size:27 final size:27
Alignment explanation
Indices: 20824366--20824455 Score: 81
Period size: 27 Copynumber: 3.3 Consensus size: 27
20824356 AAAATTATTG
* *
20824366 AAATACCCTCGACTTGTAAAATTACCA
1 AAATACCCTCGATTTATAAAATTACCA
* * * * *
20824393 AAGTACCATTGATTTATAGAATTACCG
1 AAATACCCTCGATTTATAAAATTACCA
*** *
20824420 TTTTACCCTCGATTTACAAAATTACCA
1 AAATACCCTCGATTTATAAAATTACCA
20824447 AAATACCCT
1 AAATACCCT
20824456 TGTAGGGTAG
Statistics
Matches: 45, Mismatches: 18, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATACCCTCGATTTATAAAATTACCA
Found at i:20824472 original size:27 final size:27
Alignment explanation
Indices: 20824442--20824792 Score: 445
Period size: 27 Copynumber: 13.0 Consensus size: 27
20824432 TTTACAAAAT
* *
20824442 TACCAAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
20824469 TACCGAAATACCCCTGTAGGGTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
* *
20824496 TATCGAAATACCTCTGTAGGGTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
*
20824523 TACCGAAATACCCCTATAGGGTA-AAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
** *
20824549 TTACTAAAATACCCCTGTAGGGTAGAAT
1 -TACCGAAATACCCCTGTAGGGTAGAAA
** * *
20824577 TACTAAAATACCCCTGTAGGGTAGGAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
* *
20824604 TACCAAAATACCCCGGTAGGGTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
*
20824631 TACCGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
*
20824658 TACCGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
*
20824685 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
* *
20824712 TACCGAAATACCCCTATAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
* * * *
20824739 TACTGAAATACTCCTGTAAGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
* * *
20824766 TACCGAGATACCCTTGTGGGGTA-AAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
20824792 T
1 T
20824793 TACCATTTTA
Statistics
Matches: 287, Mismatches: 35, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
26 6 0.02
27 279 0.97
28 2 0.01
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (27 bp):
TACCGAAATACCCCTGTAGGGTAGAAA
Found at i:20825102 original size:27 final size:26
Alignment explanation
Indices: 20825064--20825123 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
20825054 CCACATATAT
* *
20825064 ATATTTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
20825090 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
20825117 ATATCTG
1 ATATCTG
20825124 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:20825191 original size:98 final size:98
Alignment explanation
Indices: 20825022--20825236 Score: 376
Period size: 98 Copynumber: 2.2 Consensus size: 98
20825012 GAGGAAGCAT
* * * *
20825022 TCTGGCAGCCTCGCTACAATCTGGTGGCTTCGCCACATATATATATTTGTTCTGGTGGCCTAGCC
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCACCACATATATATATCTCTTCTGGTGGCCTAGCC
20825087 ACAATATCTGTATCTGGTGACTTCGTCACAATA
66 ACAATATCTGTATCTGGTGACTTCGTCACAATA
20825120 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCACCACATATATATATCTCTTCTGGTGGCCTAGCC
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCACCACATATATATATCTCTTCTGGTGGCCTAGCC
20825185 ACAATATCTGTATCTGGTGACTTCGTCACAATA
66 ACAATATCTGTATCTGGTGACTTCGTCACAATA
* *
20825218 TCTGGCAGTCTTGCTGCAA
1 TCTGGCAGCCTCGCTGCAA
20825237 ATTCTGTTGT
Statistics
Matches: 111, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 111 1.00
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.32
Consensus pattern (98 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCACCACATATATATATCTCTTCTGGTGGCCTAGCC
ACAATATCTGTATCTGGTGACTTCGTCACAATA
Found at i:20825202 original size:27 final size:26
Alignment explanation
Indices: 20825162--20825221 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
20825152 CCACATATAT
* *
20825162 ATATCTCTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
20825188 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
20825215 ATATCTG
1 ATATCTG
20825222 GCAGTCTTGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:20825349 original size:6 final size:6
Alignment explanation
Indices: 20825340--20825576 Score: 121
Period size: 6 Copynumber: 38.3 Consensus size: 6
20825330 TTGCATTCAC
* * * * *
20825340 ATTCTG ATTCTA ATTCTG -TTACCTG ATACTG ATTCTA ATTATG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* * *
20825390 ATTTTG ATTCTG GTTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* *
20825439 ATTCTG -TTACCTA ATTCTG ATTCTG GTTCTG ATTCTG ATTCT- ATTACCTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG
* * * * * *
20825489 ATACTG ATTTTG ATTATG -TTACCTA ATTCTA ATTCTG -TCACCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG AT--TCTG ATTCTG
* *
20825539 ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
20825577 AATGTTTCTT
Statistics
Matches: 175, Mismatches: 33, Indels: 46
0.69 0.13 0.18
Matches are distributed among these distances:
5 15 0.09
6 133 0.76
7 16 0.09
8 11 0.06
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:20825410 original size:37 final size:37
Alignment explanation
Indices: 20825362--20825444 Score: 103
Period size: 37 Copynumber: 2.2 Consensus size: 37
20825352 ATTCTGTTAC
* **
20825362 CTGATACTGATTCTAATTATGTTACCTAATTTTGATT
1 CTGATTCTGATTCTAATTATGTTACCTAATACTGATT
* * * *
20825399 CTGGTTCTGATTCTGATTCTGTTACCTGATACTGATT
1 CTGATTCTGATTCTAATTATGTTACCTAATACTGATT
20825436 CTGATTCTG
1 CTGATTCTG
20825445 TTACCTAATT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.20, C:0.17, G:0.16, T:0.47
Consensus pattern (37 bp):
CTGATTCTGATTCTAATTATGTTACCTAATACTGATT
Found at i:20825447 original size:62 final size:62
Alignment explanation
Indices: 20825341--20825544 Score: 311
Period size: 62 Copynumber: 3.3 Consensus size: 62
20825331 TGCATTCACA
* * *
20825341 TTCTGATTCTAATTCTGTTACCTGATACTGATTCTAATTATGTTACCTAATTTTGATTCTGG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTATGTTACCTAATTCTGATTCTGG
*
20825403 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTATGTTACCTAATTCTGATTCTGG
* * *
20825465 TTCTGATTCTGATTCTATTACCTGATACTGATTTTGATTATGTTACCTAATTCTAATTCT-G
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTATGTTACCTAATTCTGATTCTGG
*
20825526 TCACCTGATTCTGATTCTG
1 T--TCTGATTCTGATTCTG
20825545 ATTCTGATTC
Statistics
Matches: 130, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
61 2 0.02
62 114 0.88
63 14 0.11
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.48
Consensus pattern (62 bp):
TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTATGTTACCTAATTCTGATTCTGG
Found at i:20825548 original size:25 final size:25
Alignment explanation
Indices: 20825340--20825550 Score: 117
Period size: 25 Copynumber: 8.7 Consensus size: 25
20825330 TTGCATTCAC
*
20825340 ATTCTGATTCTAATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTTACCTG
* * * *
20825365 ATACTGATTCTAATTATGTTACCTA
1 ATTCTGATTCTGATTCTGTTACCTG
* *
20825390 ATTTTGATTCTGGTTCTGATT--CTG
1 ATTCTGATTCTGATTCTG-TTACCTG
*
20825414 ATTCTG-TTACCTGATACTGATT--CTG
1 ATTCTGATT--CTGATTCTG-TTACCTG
*
20825439 ATTCTG-TTACCTAATTCTGATT--CTG
1 ATTCTGATT--CTGATTCTG-TTACCTG
* *
20825464 GTTCTGATTCTGATTCTATTACCTG
1 ATTCTGATTCTGATTCTGTTACCTG
* * *
20825489 ATACTGATTTTGATTATGTTACCT-
1 ATTCTGATTCTGATTCTGTTACCTG
* *
20825513 A-----ATTCTAATTCTGTCACCTG
1 ATTCTGATTCTGATTCTGTTACCTG
20825533 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
20825551 ATTCTCATTT
Statistics
Matches: 147, Mismatches: 27, Indels: 24
0.74 0.14 0.12
Matches are distributed among these distances:
19 14 0.10
20 1 0.01
23 4 0.03
24 15 0.10
25 109 0.74
26 4 0.03
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.47
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTTACCTG
Found at i:20827476 original size:46 final size:46
Alignment explanation
Indices: 20827423--20827598 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 46
20827413 TATTTGGGCA
20827423 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * * * *
20827469 TCCGAACTCGTTTAGTTGAGTCCGATTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* * * *
20827516 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
20827562 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
20827599 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 63 0.61
47 28 0.27
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:20827579 original size:93 final size:93
Alignment explanation
Indices: 20827419--20827591 Score: 265
Period size: 93 Copynumber: 1.9 Consensus size: 93
20827409 GGGATATTTG
* * * *
20827419 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTTAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
*
20827484 TTGAGTCCGATTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * *
20827512 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
20827577 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
20827592 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:20841871 original size:14 final size:15
Alignment explanation
Indices: 20841852--20841881 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
20841842 ACCTAAATTG
20841852 TTATGTT-AATTCAA
1 TTATGTTAAATTCAA
20841866 TTATGTTAAATTCAA
1 TTATGTTAAATTCAA
20841881 T
1 T
20841882 GTTTATGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.50
Consensus pattern (15 bp):
TTATGTTAAATTCAA
Found at i:20878935 original size:39 final size:40
Alignment explanation
Indices: 20878858--20878964 Score: 110
Period size: 40 Copynumber: 2.7 Consensus size: 40
20878848 TAGCTCCTCG
* * *
20878858 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATATTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATATAAACTCA
* *
20878898 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATATAAACTCA
** *
20878937 CACGAATGCCTTCGAGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
20878965 ATTAGTATCT
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
39 25 0.44
40 32 0.56
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATATAAACTCA
Found at i:20878956 original size:40 final size:40
Alignment explanation
Indices: 20878901--20879084 Score: 169
Period size: 40 Copynumber: 4.6 Consensus size: 40
20878891 TAACTCATTC
* *
20878901 AATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAGAAACTCGCACA
* * *
20878941 AATGCCTTCGAGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACA
* * *
20878981 AAGGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACA
* ** ** *
20879021 AAGGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAGAAAC-TCGCACA
*
20879062 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
20879085 CAGCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
39 8 0.06
40 106 0.85
41 11 0.09
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACA
Found at i:20879017 original size:80 final size:80
Alignment explanation
Indices: 20878904--20879084 Score: 201
Period size: 80 Copynumber: 2.3 Consensus size: 80
20878894 CTCATTCAAT
* * *
20878904 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGAGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAAGGCCTTCG-GATCTTAACCCGGATA-
*
20878967 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
* * **
20878983 GGCCTTCGGGACTTAACCCGGA-ATTAGTATCTCGCACAAAGGCCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTA-AAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATA
20879047 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
20879064 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
20879085 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
79 5 0.06
80 71 0.82
81 10 0.11
82 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:20886760 original size:39 final size:40
Alignment explanation
Indices: 20886683--20886789 Score: 119
Period size: 40 Copynumber: 2.7 Consensus size: 40
20886673 TAGCTCCTCG
* * *
20886683 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATATTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATATAAACTCA
* *
20886723 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATATAAACTCA
**
20886762 CACGAATGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
20886790 ATTAGTATCT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
39 25 0.43
40 33 0.57
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATATAAACTCA
Found at i:20886788 original size:79 final size:80
Alignment explanation
Indices: 20886689--20886909 Score: 193
Period size: 80 Copynumber: 2.8 Consensus size: 80
20886679 CTCGTTCAAG
* * * ** * *
20886689 TGCCTTCGGGACATAGCCCGG-TTATATTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGGAAT-TAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
20886752 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * *
20886768 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
20886833 AATAACTCGCACAAA
66 AATAACTCGCACAAA
* * ** * * *
20886848 TACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGAAT-TAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
20886910 CAGCATTCAA
Statistics
Matches: 117, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
79 36 0.31
80 75 0.64
81 6 0.05
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:20886840 original size:80 final size:80
Alignment explanation
Indices: 20886729--20886909 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
20886719 CTCATTCAAT
* * *
20886729 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
20886792 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
20886808 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
20886872 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
20886889 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
20886910 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:20886869 original size:40 final size:40
Alignment explanation
Indices: 20886726--20886909 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
20886716 TAACTCATTC
* *
20886726 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
20886766 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
20886806 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
20886846 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
20886887 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
20886910 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:20889321 original size:49 final size:49
Alignment explanation
Indices: 20889264--20889390 Score: 157
Period size: 49 Copynumber: 2.6 Consensus size: 49
20889254 GTTGCGTGTT
*
20889264 AGTGTAAGACCTGTCTAGGACATGGCATCAACAC-CGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTAGGACATGGCATCAAC-CTCGATAGATGAAAGCC
* * * * * *
20889313 AGTGTAAGACTTGTTTGGGACATGGCATCAGCCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTAGGACATGGCATCAACCTCGATAGATGAAAGCC
* *
20889362 AGTGTAAGACCTATCTAGGACACGGCATC
1 AGTGTAAGACCTGTCTAGGACATGGCATC
20889391 GACTTTAACA
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
48 1 0.02
49 64 0.98
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTAGGACATGGCATCAACCTCGATAGATGAAAGCC
Found at i:20893700 original size:48 final size:48
Alignment explanation
Indices: 20893634--20894358 Score: 1231
Period size: 48 Copynumber: 15.2 Consensus size: 48
20893624 GAAATTGATA
* *
20893634 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTAAAATATA
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
* *
20893682 TATGAGATATGTATATGTGGTAAAGCAGAATGGCTAGTGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
*
20893730 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATA
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
20893778 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
*
20893826 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
* *
20893874 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATA
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
* *
20893922 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTAAAATATA
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
*
20893970 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTAAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
* * *
20894018 TATGATATATGTATATGTGGTAAAGCCGAATGGCTAGTGTAAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
20894066 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
*
20894114 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
*
20894162 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATA
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
* *
20894210 TATGAGATATGTATATGTGGTAAAGTCGAATGGCTAATGTGAAATATA
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
*
20894258 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
* *
20894306 TATGAGATATGTATA--T-GTAAAGTCGAATGGCTAGTGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
*
20894351 TAGGAGAT
1 TATGAGAT
20894359 GTGTGTATAT
Statistics
Matches: 650, Mismatches: 27, Indels: 3
0.96 0.04 0.00
Matches are distributed among these distances:
45 35 0.05
46 1 0.00
48 614 0.94
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
Found at i:20898257 original size:25 final size:25
Alignment explanation
Indices: 20898228--20898280 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
20898218 AGGGACTTTA
*
20898228 TGGTTGAATGCAAAAGATTTTATTT
1 TGGTTGAATACAAAAGATTTTATTT
*
20898253 TGGTTGAATACGAAAGATTTTATTT
1 TGGTTGAATACAAAAGATTTTATTT
20898278 TGG
1 TGG
20898281 ACGCAAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.30, C:0.04, G:0.23, T:0.43
Consensus pattern (25 bp):
TGGTTGAATACAAAAGATTTTATTT
Found at i:20899630 original size:23 final size:23
Alignment explanation
Indices: 20899600--20899647 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
20899590 ATTTTATTTG
20899600 AGATTGCCTTGAAATGGCTGAAA
1 AGATTGCCTTGAAATGGCTGAAA
20899623 AGATTGCCTTGAAATGGCTGAAA
1 AGATTGCCTTGAAATGGCTGAAA
20899646 AG
1 AG
20899648 GATAATTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.25
Consensus pattern (23 bp):
AGATTGCCTTGAAATGGCTGAAA
Found at i:20909484 original size:27 final size:26
Alignment explanation
Indices: 20909436--20909492 Score: 60
Period size: 27 Copynumber: 2.2 Consensus size: 26
20909426 GCGAGGCTGC
* *
20909436 CAGATATTGTGACGAAGTCACCCGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
20909463 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
20909489 CAGA
1 CAGA
20909493 CATATATATG
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 5 0.20
27 20 0.80
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:20918275 original size:39 final size:39
Alignment explanation
Indices: 20918221--20918298 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
20918211 AGACTACCAG
*
20918221 GGATTTAACTTAAGTTTGGGCCTTCGAAAGGCCCACTAA
1 GGATTTAACTTAAGTTTGGGCCTTCCAAAGGCCCACTAA
20918260 GGATTTAACTTAAGTTTGGGCCTTCCAAAGGCCCACTAA
1 GGATTTAACTTAAGTTTGGGCCTTCCAAAGGCCCACTAA
20918299 CCTACTAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (39 bp):
GGATTTAACTTAAGTTTGGGCCTTCCAAAGGCCCACTAA
Found at i:20922156 original size:21 final size:21
Alignment explanation
Indices: 20922132--20922171 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
20922122 CACTTGACAT
*
20922132 AGGGGCACATGCCCGTGTGAA
1 AGGGGCACACGCCCGTGTGAA
*
20922153 AGGGGTACACGCCCGTGTG
1 AGGGGCACACGCCCGTGTG
20922172 GCCAATTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.25, G:0.40, T:0.15
Consensus pattern (21 bp):
AGGGGCACACGCCCGTGTGAA
Found at i:20923960 original size:27 final size:27
Alignment explanation
Indices: 20923884--20923973 Score: 92
Period size: 27 Copynumber: 3.3 Consensus size: 27
20923874 TTTAGTTTAC
** *
20923884 TAAAATTACCAAAATACCTT-TAGTTTG
1 TAAAATTACTGAAATACCTTCGA-TTTG
* * * *
20923911 TAAAAATATTGAAATTCCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
20923938 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
20923965 TAAAATTAC
1 TAAAATTAC
20923974 CAAAGTACCC
Statistics
Matches: 50, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
27 49 0.98
28 1 0.02
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.36
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:20923982 original size:27 final size:27
Alignment explanation
Indices: 20923930--20923982 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
20923920 TGAAATTCCC
* *
20923930 TCGATTTGTAAAATTACTGAAATACCT
1 TCGACTTGTAAAATTACTCAAATACCT
20923957 TCGACTTGTAAAATTAC-CAAAGTACC
1 TCGACTTGTAAAATTACTCAAA-TACC
20923983 CCCGATTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 3 0.13
27 20 0.87
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (27 bp):
TCGACTTGTAAAATTACTCAAATACCT
Found at i:20924009 original size:27 final size:27
Alignment explanation
Indices: 20923979--20924162 Score: 215
Period size: 27 Copynumber: 6.8 Consensus size: 27
20923969 ATTACCAAAG
* *
20923979 TACCCCCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
20924006 TACCCCCGATTTACATAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
20924033 TACCCTCGACTTACAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
**
20924060 TACCCTTAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
20924087 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* ***
20924114 TACCCTTGATTTACAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
20924141 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
20924163 TAAAATACCC
Statistics
Matches: 134, Mismatches: 23, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 134 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:20924135 original size:81 final size:81
Alignment explanation
Indices: 20923987--20924162 Score: 246
Period size: 81 Copynumber: 2.2 Consensus size: 81
20923977 AGTACCCCCG
* *
20923987 ATTTATAGAATTACCGTTTTACCCCCGATTTACATAATTATCGTTTTACCCTCGACTTACAGAAT
1 ATTTACAGAATTACCGTTTTACCCCCGATTTACAGAATTATCGTTTTACCCTCGACTTACAGAAT
* *
20924052 TATTGTTTTACCCTTA
66 TATTATTTTACCCTCA
* * * *
20924068 ATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTA-CTGTTTTACCCTTGATTTACAGAA
1 ATTTACAGAATTACCGTTTTACCCCCGATTTACAGAATTATC-GTTTTACCCTCGACTTACAGAA
*
20924132 TTATTATTTTACCCTCG
65 TTATTATTTTACCCTCA
*
20924149 ATTTACAAAATTAC
1 ATTTACAGAATTAC
20924163 TAAAATACCC
Statistics
Matches: 84, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 1 0.01
81 83 0.99
ACGTcount: A:0.29, C:0.20, G:0.09, T:0.42
Consensus pattern (81 bp):
ATTTACAGAATTACCGTTTTACCCCCGATTTACAGAATTATCGTTTTACCCTCGACTTACAGAAT
TATTATTTTACCCTCA
Found at i:20924171 original size:27 final size:27
Alignment explanation
Indices: 20924087--20924363 Score: 89
Period size: 27 Copynumber: 10.2 Consensus size: 27
20924077 ATTACCGTTT
* * ****
20924087 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * * ***
20924114 TACCCTTGATTTACAGAATTATTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
20924141 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* * ** *
20924168 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
20924195 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* * *** **
20924222 TACCCTTGGTTTGTTAAATTACCGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* * ** *
20924249 TACCTTCAATTTGTAAAATTAC-CAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* *
20924275 TACCC-CTAATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
*
20924302 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * *
20924331 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
20924358 TACCCT
1 TACCCT
20924364 TGGTTTGTAG
Statistics
Matches: 198, Mismatches: 41, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
25 1 0.01
26 19 0.10
27 152 0.77
28 7 0.04
29 19 0.10
ACGTcount: A:0.37, C:0.19, G:0.08, T:0.35
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:20924175 original size:54 final size:54
Alignment explanation
Indices: 20923979--20924163 Score: 244
Period size: 54 Copynumber: 3.4 Consensus size: 54
20923969 ATTACCAAAG
* * * ** *
20923979 TACCCCCGATTTATAGAATTACCGTTTTACCCCCGATTTACATAATTATCGTTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTTGATTTACAGAATTATCGTTT
* * * *
20924033 TACCCTCGACTTACAGAATTATTGTTTTACCCTTAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTTGATTTACAGAATTATCGTTT
* **
20924087 TACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTTGATTTACAGAATTATCGTTT
*
20924141 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
20924164 AAAATACCCT
Statistics
Matches: 112, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 112 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACTGTTTTACCCTTGATTTACAGAATTATCGTTT
Found at i:20924188 original size:54 final size:54
Alignment explanation
Indices: 20924076--20924244 Score: 142
Period size: 54 Copynumber: 3.1 Consensus size: 54
20924066 TAATTTACAG
* * **** * ** *
20924076 AATTACCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAG
1 AATTACCATTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTGTAA
** *
20924130 AATTATTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAA
1 AATTACCATTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTGTAA
*** * * * *
20924184 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTTA
1 AATTACCATTTTACCCTCGA-TTTATAAAATTACTAAAATACCCTTGGTTTGTAA
20924238 AATTACC
1 AATTACC
20924245 GAAATACCTT
Statistics
Matches: 91, Mismatches: 23, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
53 2 0.02
54 89 0.98
ACGTcount: A:0.33, C:0.20, G:0.09, T:0.38
Consensus pattern (54 bp):
AATTACCATTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTGTAA
Found at i:20924188 original size:81 final size:81
Alignment explanation
Indices: 20924006--20924189 Score: 190
Period size: 81 Copynumber: 2.3 Consensus size: 81
20923996 ATTACCGTTT
* * * * *
20924006 TACCCCCGATTTACATAATTA-TCGTTTTACCCTCGACTTACAGAATTATTGTTTTACCCTTAAT
1 TACCCTCGATTTATAAAATTACT-GTTTTACCCTCGACTTACAGAATTATTATTTTACCCTCAAT
* ****
20924070 TTACAGAATTACCGTTT
65 TTACAAAATTACCAAAA
* * * *
20924087 TACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTATTATTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACTGTTTTACCCTCGACTTACAGAATTATTATTTTACCCTCAATT
*
20924152 TACAAAATTACTAAAA
66 TACAAAATTACCAAAA
* * *
20924168 TACCCTTGGTTTGTAAAATTAC
1 TACCCTCGATTTATAAAATTAC
20924190 CAAAATACCC
Statistics
Matches: 84, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
81 83 0.99
82 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTATAAAATTACTGTTTTACCCTCGACTTACAGAATTATTATTTTACCCTCAATT
TACAAAATTACCAAAA
Found at i:20924250 original size:54 final size:54
Alignment explanation
Indices: 20924141--20924279 Score: 183
Period size: 54 Copynumber: 2.6 Consensus size: 54
20924131 ATTATTATTT
* ** *
20924141 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
* * *
20924195 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTTAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
*
20924249 TACCTTCAATTTGTAAAATTACC-AAATACCC
1 TACCCTCAATTTGTAAAATTACCAAAATACCC
20924280 CTAATTTACA
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
53 9 0.12
54 64 0.86
55 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.32
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
Found at i:20924305 original size:53 final size:54
Alignment explanation
Indices: 20924204--20924305 Score: 127
Period size: 53 Copynumber: 1.9 Consensus size: 54
20924194 ATACCCCTAG
* ** ** *
20924204 TTTGTAAAATTACCAAAATACCCTTGGTTTGTTAAATTACCGAAATACCTTCAA
1 TTTGTAAAATTACCAAAATACCCCTAATTTGACAAATTACAGAAATACCTTCAA
20924258 TTTGTAAAATTACC-AAATACCCCTAATTT-ACAAAGTTACAGAAATACC
1 TTTGTAAAATTACCAAAATACCCCTAATTTGACAAA-TTACAGAAATACC
20924306 CTTGACTTTC
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
52 3 0.07
53 24 0.59
54 14 0.34
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCCCTAATTTGACAAATTACAGAAATACCTTCAA
Found at i:20924366 original size:27 final size:27
Alignment explanation
Indices: 20924154--20924370 Score: 152
Period size: 27 Copynumber: 8.0 Consensus size: 27
20924144 CCTCGATTTA
**
20924154 CAAAATTACTAAAATACCCTTGGTTTG
1 CAAAATTACCGAAATACCCTTGGTTTG
* * * *
20924181 TAAAATTACCAAAATACCCCTAGTTTG
1 CAAAATTACCGAAATACCCTTGGTTTG
* *
20924208 TAAAATTACCAAAATACCCTTGGTTTG
1 CAAAATTACCGAAATACCCTTGGTTTG
** **
20924235 TTAAATTACCGAAATA-CCTTCAATTTG
1 CAAAATTACCGAAATACCCTT-GGTTTG
* * ** *
20924262 TAAAATTACC-AAATACCCCTAATTTA
1 CAAAATTACCGAAATACCCTTGGTTTG
* * *
20924288 CAAAGTTACAGAAATACCCTTGACTTT-
1 CAAAATTACCGAAATACCCTTG-GTTTG
** * *
20924315 CTAAAAATTATAGAAATACCATTGGTTTA
1 C--AAAATTACCGAAATACCCTTGGTTTG
*
20924344 CAAAATTACTGAAATACCCTTGGTTTG
1 CAAAATTACCGAAATACCCTTGGTTTG
20924371 TAGATTTACC
Statistics
Matches: 156, Mismatches: 27, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
26 21 0.13
27 110 0.71
28 6 0.04
29 19 0.12
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
CAAAATTACCGAAATACCCTTGGTTTG
Found at i:20924453 original size:27 final size:27
Alignment explanation
Indices: 20924423--20924514 Score: 132
Period size: 27 Copynumber: 3.4 Consensus size: 27
20924413 ACCCCTATTA
*
20924423 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
*
20924450 GGTAAAGTGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
20924477 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
20924504 GGTAAAATGAC
1 GGTAAAATGAC
20924515 GAATATGCCC
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
27 59 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:20925359 original size:42 final size:44
Alignment explanation
Indices: 20925268--20925361 Score: 147
Period size: 42 Copynumber: 2.2 Consensus size: 44
20925258 CATTCTGCCC
* * *
20925268 AAATGGGCTTGCATACATTCATTGGTATATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGGTACATTACATGTGATATTG
20925312 AAATGGGCTTGCATACATCCATT-G-ACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGGTACATTACATGTGATATTG
20925354 AAATGGGC
1 AAATGGGC
20925362 CTATGGGCCA
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 24 0.51
43 1 0.02
44 22 0.47
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (44 bp):
AAATGGGCTTGCATACATCCATTGGTACATTACATGTGATATTG
Found at i:20925420 original size:31 final size:30
Alignment explanation
Indices: 20925385--20925491 Score: 121
Period size: 31 Copynumber: 3.6 Consensus size: 30
20925375 CGTTTACAGT
20925385 AAAGGCTTCGGCCCAGTGAAATGATTTATG
1 AAAGGCTTCGGCCCAGTGAAATGATTTATG
* *
20925415 AAAAGGCTTTGGCCCAGTGATATGATTTATG
1 -AAAGGCTTCGGCCCAGTGAAATGATTTATG
* * *
20925446 AAAGGCTTCGGCCTAGT--AATCG-TTAAACG
1 AAAGGCTTCGGCCCAGTGAAAT-GATT-TATG
20925475 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
20925492 ATATGTCAAG
Statistics
Matches: 66, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
28 4 0.06
29 19 0.29
30 15 0.23
31 28 0.42
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATG
Found at i:20925452 original size:30 final size:31
Alignment explanation
Indices: 20925385--20925458 Score: 123
Period size: 31 Copynumber: 2.4 Consensus size: 31
20925375 CGTTTACAGT
20925385 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
* *
20925416 AAAGGCTTTGGCCCAGTGATATGATTTATG-
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
20925446 AAAGGCTTCGGCC
1 AAAGGCTTCGGCC
20925459 TAGTAATCGT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 12 0.30
31 28 0.70
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:20926793 original size:46 final size:48
Alignment explanation
Indices: 20926611--20926922 Score: 223
Period size: 47 Copynumber: 6.6 Consensus size: 48
20926601 TGGGTAAGGT
* * * *
20926611 GCTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCAT-ATATC-AT
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGC-CATCGTCTCGAG
** * * * * *
20926658 ATTGATGCCATTTCCCAAACATGGTCTTACACTAACTATCATCTCGTA-
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCCATCGTCTCG-AG
* * * * *
20926706 GCCGA-GGCATGTCCCAGACAT-GTCTAACACT-GGCTTACGTCTCGAG
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCCAT-CGTCTCGAG
* * * *
20926752 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCCCTCGTCTCAAT
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCCATCGTCTCGAG
* * * * * * *
20926798 GCTGATGCCATGTCCCAAACATGGTCTTACAATGGCTATCATAAT-GTG
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCCATCGT-CTCGAG
* * * * *
20926846 GCTGAT-ACATGTCCCAGACAT-GTCTTACACTATCCCTCGTCTCAAT
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCCATCGTCTCGAG
20926892 GCTGATGCCATGTCCCAGACATGGTCTTACA
1 GCTGATGCCATGTCCCAGACATGGTCTTACA
20926923 ATGGCTCTCA
Statistics
Matches: 205, Mismatches: 47, Indels: 25
0.74 0.17 0.09
Matches are distributed among these distances:
45 3 0.01
46 77 0.38
47 93 0.45
48 30 0.15
49 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCCATCGTCTCGAG
Found at i:20926817 original size:140 final size:142
Alignment explanation
Indices: 20926614--20926922 Score: 353
Period size: 140 Copynumber: 2.2 Consensus size: 142
20926604 GTAAGGTGCT
* * * * *
20926614 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCAT-ATATCATAT--TGATGCCATTTCCCAA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC-CCTCGTCTCA-ATGCTGATGCCATGTCCCAA
* * * *
20926676 ACATGGTCTTACACTAACTATCAT-CTCGTAGCCGAGGCATGTCCCAGACATGTCTAACACT-GG
64 ACATGGTCTTACAATAACTATCATAAT-GTAGCCGAGACATGTCCCAGACATGTCTAACACTAGC
* *
20926739 CTTACGTCTCGAGGCC
128 CCT-CGTCTCAAGGCC
20926755 GATG-CATGTCCCAGACAT-GTCTTACACTAGCCCTCGTCTCAATGCTGATGCCATGTCCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCCCTCGTCTCAATGCTGATGCCATGTCCCAAAC
** * * * * *
20926818 ATGGTCTTACAATGGCTATCATAATGTGGCTGATACATGTCCCAGACATGTCTTACACTATCCCT
66 ATGGTCTTACAATAACTATCATAATGTAGCCGAGACATGTCCCAGACATGTCTAACACTAGCCCT
* *
20926883 CGTCTCAATGCT
131 CGTCTCAAGGCC
20926895 GATGCCATGTCCCAGACATGGTCTTACA
1 GATGCCATGTCCCAGACATGGTCTTACA
20926923 ATGGCTCTCA
Statistics
Matches: 141, Mismatches: 20, Indels: 13
0.81 0.11 0.07
Matches are distributed among these distances:
138 4 0.03
139 17 0.12
140 91 0.65
141 21 0.15
142 8 0.06
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.28
Consensus pattern (142 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCCCTCGTCTCAATGCTGATGCCATGTCCCAAAC
ATGGTCTTACAATAACTATCATAATGTAGCCGAGACATGTCCCAGACATGTCTAACACTAGCCCT
CGTCTCAAGGCC
Found at i:20926866 original size:94 final size:94
Alignment explanation
Indices: 20926759--20926939 Score: 335
Period size: 94 Copynumber: 1.9 Consensus size: 94
20926749 GAGGCCGATG
20926759 CATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCTGATGCCATGTCCCAAACATGGTC
1 CATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCTGATGCCATGTCCCAAACATGGTC
20926824 TTACAATGGCTATCATAATGTGGCTGATA
66 TTACAATGGCTATCATAATGTGGCTGATA
* *
20926853 CATGTCCCAGACATGTCTTACACTATCCCTCGTCTCAATGCTGATGCCATGTCCCAGACATGGTC
1 CATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCTGATGCCATGTCCCAAACATGGTC
*
20926918 TTACAATGGCTCTCATAATGTG
66 TTACAATGGCTATCATAATGTG
20926940 ACAGCCCTAA
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 84 1.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (94 bp):
CATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCTGATGCCATGTCCCAAACATGGTC
TTACAATGGCTATCATAATGTGGCTGATA
Found at i:20928867 original size:39 final size:39
Alignment explanation
Indices: 20928693--20928851 Score: 264
Period size: 39 Copynumber: 4.1 Consensus size: 39
20928683 TGTGAATATA
*
20928693 TATATGCGAGAATTATATCCGGACTTCAGGTCCGTAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
20928732 TATAAGCGAGAATTATATCCGGACTTCAAGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
20928771 TATATGCGAGAATTATATCCGGACTTTATGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
20928810 TATATGCGAGAATTATATCCGGACTTTAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
20928849 TAT
1 TAT
20928852 GTGCTGGACA
Statistics
Matches: 113, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 113 1.00
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:20934011 original size:91 final size:92
Alignment explanation
Indices: 20933908--20934178 Score: 271
Period size: 92 Copynumber: 3.0 Consensus size: 92
20933898 TATCATACTA
** *
20933908 GAAATGAGTAAGACCATAGCTGAAAG-T-CGCTATGGTGTCGCGAT-TCAAATGTGTAAGACCAT
1 GAAATGAGTAAGACCATAGCTGAAAGATAC-C-ATGGTAACACGATATCAAATGTGTAAGACCAT
*
20933970 GGTTGAAAGATACTATGGCAACATGATGT
64 GGTTGAAAGATACCATGGCAACATGATGT
* * * * *
20933999 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAACATGATATGAAATGTGTAAGACCATGG
1 GAAATGAGTAAGACCATAGCTGAAAGATACCATGGTAACACGATATCAAATGTGTAAGACCATGG
** **
20934064 TTGAAAGATACCATGGCAATGTGACAT
66 TTGAAAGATACCATGGCAACATGATGT
* * * * * ** * *
20934091 GAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC-CTGACAGAAAATGAGTAAGACCATA
1 GAAATGAGTAAGACCATAGCTGAAAGATACCATGGTAACAC-GATATCAAATGTGTAAGACCATG
* *
20934155 GTTGAAAGATACTATGGCATCATG
65 GTTGAAAGATACCATGGCAACATG
20934179 TCGAAGATAA
Statistics
Matches: 150, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
91 32 0.21
92 117 0.78
93 1 0.01
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.24
Consensus pattern (92 bp):
GAAATGAGTAAGACCATAGCTGAAAGATACCATGGTAACACGATATCAAATGTGTAAGACCATGG
TTGAAAGATACCATGGCAACATGATGT
Found at i:20934014 original size:46 final size:46
Alignment explanation
Indices: 20933954--20934178 Score: 308
Period size: 46 Copynumber: 4.9 Consensus size: 46
20933944 GTCGCGATTC
* *
20933954 AAATGTGTAAGACCATGGTTGAAAGATACTATGGCAACATGATGTG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG
*
20934000 AAATGTGTAAGACCATGGTTGAAAGATACCATGGTAACATGATATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG
** *
20934046 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATGTGACATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG
** * *
20934092 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGACA-G
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG
* * * *
20934137 AAAATGAGTAAGACCATAGTTGAAAGATACTATGGCATCATG
1 -AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
20934179 TCGAAGATAA
Statistics
Matches: 162, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 161 0.99
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.24
Consensus pattern (46 bp):
AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG
Found at i:20934022 original size:21 final size:21
Alignment explanation
Indices: 20933954--20934023 Score: 52
Period size: 21 Copynumber: 3.1 Consensus size: 21
20933944 GTCGCGATTC
20933954 AAATGTGTAAGACCATGGTTG
1 AAATGTGTAAGACCATGGTTG
* * * *
20933975 AAA-GATACTATGGCAACATGATGTG
1 AAATG-T-GTA-AG-ACCATGGT-TG
20934000 AAATGTGTAAGACCATGGTTG
1 AAATGTGTAAGACCATGGTTG
20934021 AAA
1 AAA
20934024 GATACCATGG
Statistics
Matches: 35, Mismatches: 8, Indels: 12
0.64 0.15 0.22
Matches are distributed among these distances:
20 1 0.03
21 9 0.26
22 8 0.23
23 2 0.06
24 8 0.23
25 6 0.17
26 1 0.03
ACGTcount: A:0.39, C:0.10, G:0.26, T:0.26
Consensus pattern (21 bp):
AAATGTGTAAGACCATGGTTG
Found at i:20934818 original size:26 final size:24
Alignment explanation
Indices: 20934757--20934819 Score: 63
Period size: 26 Copynumber: 2.5 Consensus size: 24
20934747 ATATATATAT
* *
20934757 ATAAGAAAGAAATTAAGAATTGAA
1 ATAAGAATGAAATTAAGAATCGAA
**
20934781 ATGTGAATTGAAATTAAGATATCGAA
1 ATAAGAA-TGAAATTAAGA-ATCGAA
20934807 ATAAGAAGTGAAA
1 ATAAGAA-TGAAA
20934820 ATAAAATGAA
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
24 5 0.17
25 10 0.33
26 15 0.50
ACGTcount: A:0.56, C:0.02, G:0.19, T:0.24
Consensus pattern (24 bp):
ATAAGAATGAAATTAAGAATCGAA
Found at i:20936606 original size:30 final size:31
Alignment explanation
Indices: 20936572--20936641 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 31
20936562 TGGCCCAAGA
* * * *
20936572 GTAAATATTCAAAATTTGAGGGATTAA-AGT
1 GTAAATATTAAAAAGTTGAAGGACTAATAGT
*
20936602 GTAAATATGAAAAAGTTGAAGGACTAATAGT
1 GTAAATATTAAAAAGTTGAAGGACTAATAGT
*
20936633 GCAAATATT
1 GTAAATATT
20936642 TTAAGGGTGG
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
30 22 0.69
31 10 0.31
ACGTcount: A:0.46, C:0.04, G:0.20, T:0.30
Consensus pattern (31 bp):
GTAAATATTAAAAAGTTGAAGGACTAATAGT
Found at i:20942442 original size:43 final size:44
Alignment explanation
Indices: 20942391--20942584 Score: 182
Period size: 43 Copynumber: 4.5 Consensus size: 44
20942381 AGTTACCGAG
* *
20942391 ATGTGATTACATGTAAGACCATGTATGGGACATTGGCGTTATAT
1 ATGTGATTACATGTAAGACCATGTATGGGACATTGGCATCATAT
* * ** **
20942435 -TTTGATTACATGTAAGACCATGTTTGGGACATTGGTGTTGTAT
1 ATGTGATTACATGTAAGACCATGTATGGGACATTGGCATCATAT
** * *
20942478 -TGTGATTATGTGTAAGACCATGTCTGAGACATTGGCATCAT-T
1 ATGTGATTACATGTAAGACCATGTATGGGACATTGGCATCATAT
* * * * *
20942520 AAT-TGATTTCGTGTAAGACCCTGTATGGGAAAGTGGCATCA-AT
1 -ATGTGATTACATGTAAGACCATGTATGGGACATTGGCATCATAT
*
20942563 ATGTGATAACATGTAAGACCAT
1 ATGTGATTACATGTAAGACCAT
20942585 ATCTGGGATA
Statistics
Matches: 122, Mismatches: 24, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
42 3 0.02
43 118 0.97
44 1 0.01
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.35
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTATGGGACATTGGCATCATAT
Found at i:20942537 original size:86 final size:86
Alignment explanation
Indices: 20942392--20942549 Score: 201
Period size: 86 Copynumber: 1.8 Consensus size: 86
20942382 GTTACCGAGA
* * * *
20942392 TGTGATTACATGTAAGACCATGTATGGGACATTGGCGTTATATTTTGATTACATGTAAGACCATG
1 TGTGATTACATGTAAGACCATGTATGAGACATTGGCATCATATATTGATTACATGTAAGACCATG
*
20942457 TTTGGGACATTGGTGTTGTAT
66 TATGGGACATTGGTGTTGTAT
** * * * *
20942478 TGTGATTATGTGTAAGACCATGTCTGAGACATTGGCATCAT-TAATTGATTTCGTGTAAGACCCT
1 TGTGATTACATGTAAGACCATGTATGAGACATTGGCATCATAT-ATTGATTACATGTAAGACCAT
20942542 GTATGGGA
65 GTATGGGA
20942550 AAGTGGCATC
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
85 1 0.02
86 59 0.98
ACGTcount: A:0.26, C:0.12, G:0.25, T:0.37
Consensus pattern (86 bp):
TGTGATTACATGTAAGACCATGTATGAGACATTGGCATCATATATTGATTACATGTAAGACCATG
TATGGGACATTGGTGTTGTAT
Found at i:20954562 original size:46 final size:46
Alignment explanation
Indices: 20954509--20954680 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
20954499 CTCATAGCCA
* *
20954509 ATGCATGTCCCAGACATGTCTTACCCTAGCT-TATGTCTTGAGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTA-GTATTGAGGCCG
* * ** * *
20954555 ATGCATGTCCCATACATGTCTTACACTAGCTCTCGTATCAATGCTG
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTAGTATTGAGGCCG
* * *
20954601 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA-TAATGTGGCCG
1 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-AGTATTGAGGCCG
*
20954649 ATGCATGTCCCAGTCATGTCTTACACTAGCTC
1 ATGCATGTCCCAGACATGTCTTACACTAGCTC
20954681 ACAAACAAAT
Statistics
Matches: 103, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
46 53 0.51
47 27 0.26
48 23 0.22
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCTCTAGTATTGAGGCCG
Found at i:20954656 original size:47 final size:45
Alignment explanation
Indices: 20954418--20954680 Score: 176
Period size: 47 Copynumber: 5.6 Consensus size: 45
20954408 GTGCCAATGC
* * **
20954418 CATGTCCCAGACATGGTCTTACACT-G-GCTCATATCTCAAGTTGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTCATATGT--AGCCGATG
* * * * * *
20954464 CCATGTTCCAGACATGGCCTTACACT-GACTATCATCTCATAGCCAATG
1 -CATGTCCCAGACAT-GTCTTACACTAG-CTCTCATAT-GTAGCCGATG
* * *
20954512 CATGTCCCAGACATGTCTTACCCTAGCT-T-ATGTCTTGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATAT-GT-A-GCCGATG
* * ** *
20954558 CATGTCCCATACATGTCTTACACTAGCTCTCGTATCAATGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATATGTA-GCCGATG
* *
20954604 CCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-ATGTAGCCGATG
*
20954652 CATGTCCCAGTCATGTCTTACACTAGCTC
1 CATGTCCCAGACATGTCTTACACTAGCTC
20954681 ACAAACAAAT
Statistics
Matches: 173, Mismatches: 32, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
44 5 0.03
45 2 0.01
46 63 0.36
47 65 0.38
48 30 0.17
49 7 0.04
50 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.30
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATATGTAGCCGATG
Found at i:20954670 original size:140 final size:140
Alignment explanation
Indices: 20954418--20954679 Score: 341
Period size: 140 Copynumber: 1.9 Consensus size: 140
20954408 GTGCCAATGC
* * * *
20954418 CATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTTGATGCCATGTTCCAGACATGGCC
1 CATGTCCCAGACATGGTCTTACACTAGCTCATATATCAAGCTGATGCCATGTCCCAGACATGGCC
* *
20954483 TTACACTGACTATCATCTCATAGCCAATGCATGTCCCAGACATGTCTTACCCTAGCTTATGTCTT
66 TTACACTGACTATCATATCATAGCCAATGCATGTCCCAGACATGTCTTACACTAGCTTATGTCTT
20954548 GAGGCCGATG
131 GAGGCCGATG
* *
20954558 CATGTCCCATACAT-GTCTTACACTAGCTC-TCGTATCAATGCTGATGCCATGTCCCAGACATGG
1 CATGTCCCAGACATGGTCTTACACTAGCTCAT-ATATCAA-GCTGATGCCATGTCCCAGACATGG
* * * * * * *
20954621 TCTTACACTGGCTCTCATAAT-GTGGCCGATGCATGTCCCAGTCATGTCTTACACTAGCT
64 CCTTACACTGACTATCAT-ATCATAGCCAATGCATGTCCCAGACATGTCTTACACTAGCT
20954680 CACAAACAAA
Statistics
Matches: 104, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
138 1 0.01
139 19 0.18
140 83 0.80
141 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.30
Consensus pattern (140 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCATATATCAAGCTGATGCCATGTCCCAGACATGGCC
TTACACTGACTATCATATCATAGCCAATGCATGTCCCAGACATGTCTTACACTAGCTTATGTCTT
GAGGCCGATG
Found at i:20956809 original size:205 final size:204
Alignment explanation
Indices: 20956446--20956853 Score: 525
Period size: 205 Copynumber: 2.0 Consensus size: 204
20956436 GTAAAATTTT
* * * *
20956446 CTAAAGTTCTCGTTTAGTCCTGAACCACTTCCAAAGCATGTTTTGGGCCTCGTAGGCTCATATTA
1 CTAAAGTCCTCGTTTAGTCCAGAACCACTCCCAAAGCATGTTTAGGGCCTCGTAGGCTCATATTA
*
20956511 TGGACTTTATGGTTAAATGCAAAAAAGTTTTAATTTGGAAAAAAATCTATAACCCGAAATTGTAT
66 GGGACTTTATGGTTAAATGCAAAAAAGTTTTAATTTGGAAAAAAATCTATAACCCGAAATTGTAT
* * **
20956576 GTTTGTTTGTGTGATAAGTCTAGTAATGCCTCGTACCCTATTCCAGTGTTGAATACGGGTAAGGG
131 GATTGTTTGTGTGATAAGTCGAGTAATGCCTCGTACCCTATTCCAGCATTGAATACGGGTAAGGG
20956641 GTGTTACAA
196 GTGTTACAA
20956650 CTAAAGTCCTCAGTTTAGTCCCAG-ACCACTCCCAAAGCATGTTTAGGGCCTCGTAGGCTCATAT
1 CTAAAGTCCTC-GTTTAGT-CCAGAACCACTCCCAAAGCATGTTTAGGGCCTCGTAGGCTCATAT
** * ** *** * ** *
20956714 TAGGGACTTTATGGTTGGATGTAAATGA-TTTTAATTTGGACGCAAATTTATGGCTCGAAATTGT
64 TAGGGACTTTATGGTTAAATGCAAAAAAGTTTTAATTTGGAAAAAAATCTATAACCCGAAATTGT
* * ** *
20956778 ATGATTGTTTGTGTTG-TAAGTTCGGGTAATGCCTCGTACCCTTTTCTGGCATTGAATATGGGTA
129 ATGATTGTTTGTG-TGATAAG-TCGAGTAATGCCTCGTACCCTATTCCAGCATTGAATACGGGTA
20956842 AGGGGTGTTACA
192 AGGGGTGTTACA
20956854 TGATTGTTAA
Statistics
Matches: 174, Mismatches: 26, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
204 55 0.32
205 116 0.67
206 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (204 bp):
CTAAAGTCCTCGTTTAGTCCAGAACCACTCCCAAAGCATGTTTAGGGCCTCGTAGGCTCATATTA
GGGACTTTATGGTTAAATGCAAAAAAGTTTTAATTTGGAAAAAAATCTATAACCCGAAATTGTAT
GATTGTTTGTGTGATAAGTCGAGTAATGCCTCGTACCCTATTCCAGCATTGAATACGGGTAAGGG
GTGTTACAA
Found at i:20957303 original size:25 final size:25
Alignment explanation
Indices: 20957254--20957303 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
20957244 TCCTCATCAG
* **
20957254 AAGTTGGTCTGCATCCTTTTTACGT
1 AAGTTAGTCTGCATCCTTTGCACGT
*
20957279 AAGTTAGTTTGCATCCTTTGCACGT
1 AAGTTAGTCTGCATCCTTTGCACGT
20957304 TGGTTCACCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.18, C:0.20, G:0.20, T:0.42
Consensus pattern (25 bp):
AAGTTAGTCTGCATCCTTTGCACGT
Found at i:20963426 original size:43 final size:44
Alignment explanation
Indices: 20963378--20963533 Score: 201
Period size: 43 Copynumber: 3.6 Consensus size: 44
20963368 TTTCGAGATG
*
20963378 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT-TA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATATA
*
20963421 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGT-TATA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATATA
*** * *
20963464 TGATTTTGTGTAAGACCATTTCTGGGACATTGGCATCG-ATATG
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATATA
* * *
20963507 TGATAACATGTAAGACAATATCTGGGA
1 TGATTACATGTAAGACCATGTCTGGGA
20963534 TATGATATTG
Statistics
Matches: 99, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
42 1 0.01
43 98 0.99
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.33
Consensus pattern (44 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATATA
Found at i:20965355 original size:24 final size:24
Alignment explanation
Indices: 20965323--20965373 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
20965313 TCAGTGTAAG
20965323 ACCTATCTGGGACATGGCATTGAC
1 ACCTATCTGGGACATGGCATTGAC
20965347 ACCTATCTGGGACATGGCATTGAC
1 ACCTATCTGGGACATGGCATTGAC
20965371 ACC
1 ACC
20965374 GATAGATGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (24 bp):
ACCTATCTGGGACATGGCATTGAC
Found at i:20965426 original size:49 final size:49
Alignment explanation
Indices: 20965352--20965464 Score: 140
Period size: 49 Copynumber: 2.3 Consensus size: 49
20965342 TTGACACCTA
* *
20965352 TCTGGGACATGGCATTGACACCGATAGATGAGAG-CTATTATAAGACTTG
1 TCTGGGACATGGCATTGACACCGATAGATGAAAGTC-AGTATAAGACTTG
* * * *
20965401 TCTGGGACACGGCATTGGC-CTCGATATATGAAAGTCAGTGTAAGACTTG
1 TCTGGGACATGGCATTGACAC-CGATAGATGAAAGTCAGTATAAGACTTG
20965450 TCTGGGACATGGCAT
1 TCTGGGACATGGCAT
20965465 CGACTTTGAT
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
48 1 0.02
49 53 0.96
50 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (49 bp):
TCTGGGACATGGCATTGACACCGATAGATGAAAGTCAGTATAAGACTTG
Found at i:20966382 original size:14 final size:14
Alignment explanation
Indices: 20966363--20966390 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
20966353 TGGTAAGAAA
20966363 ATCTTAATTTGGAG
1 ATCTTAATTTGGAG
20966377 ATCTTAATTTGGAG
1 ATCTTAATTTGGAG
20966391 TCTCATAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (14 bp):
ATCTTAATTTGGAG
Found at i:20969428 original size:141 final size:141
Alignment explanation
Indices: 20969174--20969460 Score: 520
Period size: 141 Copynumber: 2.0 Consensus size: 141
20969164 AAGAGAGCCA
* *
20969174 AAATTATGTGTACAATCGAGCTAGGTCACATGAGTGGTGCTAAGTGAAGGCCACTATTTGTACAA
1 AAATTATGTGTACAATCGAGCTAGGTCACATGAGTGGTGCTAACTGAAGGCCACTATGTGTACAA
*
20969239 GAGAGCTTTGATTTTAAAGGTGGGCTGTGTGCGATACCATTGCGTATCTGTTATTATTCCGAAGC
66 GAGAGCTTTGATTTTAAAGGTGGGCTGTGTGCGATACCATTGCATATCTGTTATTATTCCGAAGC
*
20969304 GTTCAACTGGG
131 GTTCAACTAGG
*
20969315 AAATTATGTGTACAATCGAGCTAGGTCACATGAGTGGTGCTAACTGAAGGCCACTGTGTGTACAA
1 AAATTATGTGTACAATCGAGCTAGGTCACATGAGTGGTGCTAACTGAAGGCCACTATGTGTACAA
*
20969380 GAGAGCTTTGATTTTAAAGGTGGGCTGTGTGCGATACCATTGCATATCTGTTATTATTTCGAAGC
66 GAGAGCTTTGATTTTAAAGGTGGGCTGTGTGCGATACCATTGCATATCTGTTATTATTCCGAAGC
20969445 GTTCAACTAGG
131 GTTCAACTAGG
20969456 AAATT
1 AAATT
20969461 GATTAAATGA
Statistics
Matches: 140, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
141 140 1.00
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.31
Consensus pattern (141 bp):
AAATTATGTGTACAATCGAGCTAGGTCACATGAGTGGTGCTAACTGAAGGCCACTATGTGTACAA
GAGAGCTTTGATTTTAAAGGTGGGCTGTGTGCGATACCATTGCATATCTGTTATTATTCCGAAGC
GTTCAACTAGG
Found at i:20974244 original size:39 final size:39
Alignment explanation
Indices: 20974185--20974309 Score: 169
Period size: 39 Copynumber: 3.2 Consensus size: 39
20974175 TTTAACCTGA
* ** *
20974185 ATATTTTTCCAGCACGTAGCCTACGGACCTCAAGTCCGG
1 ATATATTTCCAGCATATAGCCTACGGACCTCATGTCCGG
* * *
20974224 ATATATTTCTAGCATATAGCCTGCGGATCTCATGTCCGG
1 ATATATTTCCAGCATATAGCCTACGGACCTCATGTCCGG
* *
20974263 ATATTTTTCCAGCATATAGCCTACGGACTTCATGTCCGG
1 ATATATTTCCAGCATATAGCCTACGGACCTCATGTCCGG
20974302 ATATATTT
1 ATATATTT
20974310 TCAATCTCAT
Statistics
Matches: 73, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 73 1.00
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (39 bp):
ATATATTTCCAGCATATAGCCTACGGACCTCATGTCCGG
Found at i:20976403 original size:44 final size:41
Alignment explanation
Indices: 20976306--20976403 Score: 117
Period size: 40 Copynumber: 2.3 Consensus size: 41
20976296 CAATGGTATT
* * *
20976306 TGGCACTAAGTGTGCGATTCAAAATAGCTTGGGTTATCTAA
1 TGGCACTAAGTGTGCGATCCAAAATAGCTTCGGTTATCAAA
* *
20976347 -GGCACTAAGTGTGCGATACCGAGATAGCTTCGGTTAATTCAAA
1 TGGCACTAAGTGTGCGAT-CCAAAATAGCTTCGGTT-A-TCAAA
20976390 TGGCACTAAGTGTG
1 TGGCACTAAGTGTG
20976404 TGGAATCGTT
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
40 17 0.35
41 13 0.27
42 1 0.02
43 4 0.08
44 13 0.27
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (41 bp):
TGGCACTAAGTGTGCGATCCAAAATAGCTTCGGTTATCAAA
Found at i:20979173 original size:51 final size:51
Alignment explanation
Indices: 20979097--20979396 Score: 458
Period size: 51 Copynumber: 5.9 Consensus size: 51
20979087 GGATATACGA
*
20979097 TGGCCTTCACATAGTACCACCCTTGTAG-CCAAAGCTATTTTATTCACAAAG
1 TGGCCTTCACATAGTACCACACTTGT-GTCCAAAGCTATTTTATTCACAAAG
* *
20979148 TGGCCTTCACATAGTACCACACTTGTTTCCAAAACTATTTTATTCACAAAG
1 TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAG
* * * *
20979199 TGGCCATCACATAGTACCACGCTTGTCTCCAAAGCTATTATATTCACAAAG
1 TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAG
20979250 TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAG
1 TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAG
* * * * * *
20979301 TGACCATCACATAGTACCACGCTTGTGTCCAAATCTATTATATTCAGAAAG
1 TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAG
*
20979352 TGGCCTTCACATAGTACCACACTTGTGTCCAAAGTTATTTTATTC
1 TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
20979397 CTAAGGTTCA
Statistics
Matches: 224, Mismatches: 24, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
51 224 1.00
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (51 bp):
TGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAG
Found at i:20979457 original size:28 final size:28
Alignment explanation
Indices: 20979420--20979522 Score: 154
Period size: 28 Copynumber: 3.7 Consensus size: 28
20979410 GGGAAATTTC
*
20979420 TCACTTAGCACCA-TGTCATGGACTTATT
1 TCACTTAGCA-CATTGCCATGGACTTATT
20979448 TCACTTAGCACATTGCCATGGACTTATT
1 TCACTTAGCACATTGCCATGGACTTATT
* *
20979476 TCACTTAACACATTGCCATGGTCTTATT
1 TCACTTAGCACATTGCCATGGACTTATT
*
20979504 TCACTTAGCACAATGCCAT
1 TCACTTAGCACATTGCCAT
20979523 ATCCTAGATA
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
27 2 0.03
28 67 0.97
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.35
Consensus pattern (28 bp):
TCACTTAGCACATTGCCATGGACTTATT
Found at i:20984104 original size:12 final size:12
Alignment explanation
Indices: 20984087--20984113 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
20984077 CTCTGTTACC
20984087 ACTTAATGTAAT
1 ACTTAATGTAAT
20984099 ACTTAATGTAAT
1 ACTTAATGTAAT
20984111 ACT
1 ACT
20984114 CATTACTCGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.11, G:0.07, T:0.41
Consensus pattern (12 bp):
ACTTAATGTAAT
Found at i:20989696 original size:15 final size:15
Alignment explanation
Indices: 20989678--20989707 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
20989668 ACGATCCAGC
*
20989678 ATGATATGTTATGAT
1 ATGATAAGTTATGAT
20989693 ATGATAAGTTATGAT
1 ATGATAAGTTATGAT
20989708 CCATATGAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.43
Consensus pattern (15 bp):
ATGATAAGTTATGAT
Found at i:21001184 original size:16 final size:16
Alignment explanation
Indices: 21001165--21001203 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
21001155 GTAAATTGGT
*
21001165 AAAAGCCGAAATGCCG
1 AAAAGCCGAAATACCG
*
21001181 AAAAGTCGAAATACCG
1 AAAAGCCGAAATACCG
21001197 AAAAGCC
1 AAAAGCC
21001204 AAAAGTTTGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.49, C:0.23, G:0.21, T:0.08
Consensus pattern (16 bp):
AAAAGCCGAAATACCG
Found at i:21005344 original size:12 final size:12
Alignment explanation
Indices: 21005327--21005352 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
21005317 ATTGATCCGA
21005327 GATCGGTTGAAG
1 GATCGGTTGAAG
21005339 GATCGGTTGAAG
1 GATCGGTTGAAG
21005351 GA
1 GA
21005353 GGCCTCTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.08, G:0.42, T:0.23
Consensus pattern (12 bp):
GATCGGTTGAAG
Found at i:21007394 original size:29 final size:29
Alignment explanation
Indices: 21007358--21007469 Score: 129
Period size: 29 Copynumber: 3.9 Consensus size: 29
21007348 ATGAATATAT
*
21007358 GGTGATTTGGGCCTAACGGGCCATATAAA
1 GGTGATTTGGGCCTAATGGGCCATATAAA
*
21007387 GGTGATTTGGGCCTAATGGGCCATATGAA
1 GGTGATTTGGGCCTAATGGGCCATATAAA
** * *
21007416 TATGAATTGGGCCTGATGGGCCATATAAA
1 GGTGATTTGGGCCTAATGGGCCATATAAA
* *
21007445 TGAGA-TTGGGCC-AAGTGGGCCATAT
1 GGTGATTTGGGCCTAA-TGGGCCATAT
21007470 GCATGTAAGT
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
27 1 0.01
28 17 0.24
29 54 0.75
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
GGTGATTTGGGCCTAATGGGCCATATAAA
Found at i:21009966 original size:41 final size:41
Alignment explanation
Indices: 21009891--21009968 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
21009881 ATAGTGATAT
*
21009891 TCGGGCTTTAAGCCTAGCAAGCATTGTGCTGGTGAATGTAA
1 TCGGGCTTTAAGCCTAGCAAGCATTGTGCAGGTGAATGTAA
* * *
21009932 TCGGGCTTTATGCCTAGCAGGC-TTATTGCAGGTGAAT
1 TCGGGCTTTAAGCCTAGCAAGCATT-GTGCAGGTGAAT
21009969 ATAAAATCAG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 2 0.06
41 30 0.94
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (41 bp):
TCGGGCTTTAAGCCTAGCAAGCATTGTGCAGGTGAATGTAA
Found at i:21024789 original size:49 final size:49
Alignment explanation
Indices: 21024708--21024947 Score: 259
Period size: 49 Copynumber: 4.8 Consensus size: 49
21024698 ATCTATTGTG
*
21024708 AGGTCACGTGTGTAGTACTAAGTGCAGCCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAG-CTACTACGTGTACCGGATAATT
* * * *
21024758 -GGTCGCATGTGTAGTACTAAGTGCATGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCA-GCTACTACGTGTACCGGATAA-TT
* * ** * * **
21024808 CGATCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCA-GCTACTACGTGTACCGGATAATT
* *
21024858 AGGTCACGTGTGTAGTACTAAGTGTAGACTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAG-CTACTACGTGTACCGGATAATT
* *
21024908 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTAC
1 AGGTCACATGTGTAGTACTAAGTGCA-GCTACTACGTGTAC
21024948 TAGATAGCCT
Statistics
Matches: 157, Mismatches: 28, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
49 75 0.48
50 46 0.29
51 36 0.23
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (49 bp):
AGGTCACATGTGTAGTACTAAGTGCAGCTACTACGTGTACCGGATAATT
Found at i:21024905 original size:101 final size:98
Alignment explanation
Indices: 21024711--21024953 Score: 290
Period size: 100 Copynumber: 2.4 Consensus size: 98
21024701 TATTGTGAGG
* * *
21024711 TCACGTGTGTAGTACTAAGTGCAGCCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
*
21024776 AAGTGCATGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCATGCTACTACGCGTACCCGATAA-TT-GA
* * ** *
21024811 TCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTAC
* * * *
21024876 TAAGTGTA-GACTACTACGTGTACCGGATAATTGG
65 TAAGTGCATG-CTACTACGCGTACCCGATAATTGA
* * * *
21024910 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTAGATA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
21024954 GCCTTGTCTA
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
99 38 0.31
100 44 0.36
101 39 0.32
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCATGCTACTACGCGTACCCGATAATTGA
Found at i:21032481 original size:46 final size:45
Alignment explanation
Indices: 21032428--21032603 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
21032418 TATTTGGGCA
21032428 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
21032474 TCCGAACTCGTTGAGTTGAGTCCAAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
21032521 TCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
21032567 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
21032604 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.63
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:21032583 original size:93 final size:93
Alignment explanation
Indices: 21032424--21032595 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
21032414 AGGATATTTG
* *
21032424 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
21032489 TTGAGTCCAAGTTCGAGAGATGTAACTA
66 TTGAGTCCAAGTTCGAGAGATGTAACTA
* * *
21032517 GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
21032582 TTGAGTCCGAGTTC
66 TTGAGTCCAAGTTC
21032596 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCAAGTTCGAGAGATGTAACTA
Found at i:21036058 original size:28 final size:28
Alignment explanation
Indices: 21036017--21036146 Score: 215
Period size: 28 Copynumber: 4.6 Consensus size: 28
21036007 TATGTAGAGT
*
21036017 ACTTAGTGCGCGAGACATTGATTATGGC
1 ACTTAGTGTGCGAGACATTGATTATGGC
* *
21036045 ACTTAGTGTACGAGACTTTGATTATGGC
1 ACTTAGTGTGCGAGACATTGATTATGGC
21036073 ACTTAGTGTGCGAGACATTGATTATGGC
1 ACTTAGTGTGCGAGACATTGATTATGGC
* *
21036101 AATTAGTGTGCGAGACATTGATTGTGGC
1 ACTTAGTGTGCGAGACATTGATTATGGC
21036129 ACTTAGTGTGCGAGACAT
1 ACTTAGTGTGCGAGACAT
21036147 CAAGTATGCG
Statistics
Matches: 94, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 94 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (28 bp):
ACTTAGTGTGCGAGACATTGATTATGGC
Found at i:21041270 original size:40 final size:40
Alignment explanation
Indices: 21041226--21041386 Score: 225
Period size: 40 Copynumber: 4.0 Consensus size: 40
21041216 AGAATTGATA
21041226 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
* **
21041266 GTTATAGT-CGGGCTAAGTCCTGAAGAGCATTTATGCTGGT
1 GTTATA-TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
* *
21041306 GTTATATCTGGGCTAAGTCTCGAAGAGCATTCGTGCTGGT
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
* * * *
21041346 GTTACATCCGGGCTAAGTCCTGAAGGGCATTCGTGCCGGT
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
21041386 G
1 G
21041387 ATGTGTAATC
Statistics
Matches: 105, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 103 0.98
41 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (40 bp):
GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
Found at i:21041321 original size:80 final size:80
Alignment explanation
Indices: 21041226--21041376 Score: 250
Period size: 80 Copynumber: 1.9 Consensus size: 80
21041216 AGAATTGATA
*
21041226 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATAGT-CGGGCTAAGTCCTGAA
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTACA-TCCGGGCTAAGTCCTGAA
21041290 GAGCATTTATGCTGGT
65 GAGCATTTATGCTGGT
* *
21041306 GTTATATCTGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTTACATCCGGGCTAAGTCCTGAAG
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTACATCCGGGCTAAGTCCTGAAG
*
21041371 GGCATT
66 AGCATT
21041377 CGTGCCGGTG
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
79 1 0.02
80 65 0.98
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (80 bp):
GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTACATCCGGGCTAAGTCCTGAAG
AGCATTTATGCTGGT
Found at i:21041455 original size:43 final size:43
Alignment explanation
Indices: 21041375--21041517 Score: 160
Period size: 43 Copynumber: 3.3 Consensus size: 43
21041365 CTGAAGGGCA
* * * *
21041375 TTCGTGCCGGTGATGTGTAATCAGGCGTTCATGCCTAGCAGGC
1 TTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGC
* * *
21041418 TTTGTGCTGGTGATGTGTATTCGGGCCTTCGTTCCTAGCAGGC
1 TTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGC
* * * **
21041461 TTCATACCGGTGATGTGTATTTGGTTCTTCGTGCCTAGCAGGC
1 TTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGC
**
21041504 TTAATGCCGGTGAT
1 TTCGTGCCGGTGAT
21041518 TCGAGCAAAG
Statistics
Matches: 83, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 83 1.00
ACGTcount: A:0.14, C:0.21, G:0.31, T:0.34
Consensus pattern (43 bp):
TTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGC
Found at i:21041664 original size:25 final size:25
Alignment explanation
Indices: 21041636--21041690 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
21041626 TATGTAATAA
21041636 CGAATGAATAT-AGGCACTATGGGTG
1 CGAATGAAT-TGAGGCACTATGGGTG
* *
21041661 CGAATGAATTGAGGCACTGTGTGTG
1 CGAATGAATTGAGGCACTATGGGTG
21041686 CGAAT
1 CGAAT
21041691 TCTTTAACCG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (25 bp):
CGAATGAATTGAGGCACTATGGGTG
Found at i:21041711 original size:28 final size:28
Alignment explanation
Indices: 21041674--21041768 Score: 102
Period size: 28 Copynumber: 3.4 Consensus size: 28
21041664 ATGAATTGAG
*
21041674 GCACTGTGTGTGCGAATTCTTTAACCGA
1 GCACTATGTGTGCGAATTCTTTAACCGA
** * **
21041702 GCACTATGTGTGCGAGA-TCGGTCAGTGA
1 GCACTATGTGTGCGA-ATTCTTTAACCGA
*
21041730 GCACTGTGTGTGCGAATTCTTTAACCGA
1 GCACTATGTGTGCGAATTCTTTAACCGA
*
21041758 GCAATATGTGT
1 GCACTATGTGT
21041769 ACGAGATCAG
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
27 1 0.02
28 49 0.96
29 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (28 bp):
GCACTATGTGTGCGAATTCTTTAACCGA
Found at i:21041743 original size:56 final size:56
Alignment explanation
Indices: 21041674--21041799 Score: 216
Period size: 56 Copynumber: 2.2 Consensus size: 56
21041664 ATGAATTGAG
* * *
21041674 GCACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTGA
1 GCACTGTGTGTGCGAATTCTTTAACCGAGCAATATGTGTACGAGATCAGTCAGTGA
*
21041730 GCACTGTGTGTGCGAATTCTTTAACCGAGCAATATGTGTACGAGATCAGTCAGTGG
1 GCACTGTGTGTGCGAATTCTTTAACCGAGCAATATGTGTACGAGATCAGTCAGTGA
21041786 GCACTGTGTGTGCG
1 GCACTGTGTGTGCG
21041800 GATTTCGTTT
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 66 1.00
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.29
Consensus pattern (56 bp):
GCACTGTGTGTGCGAATTCTTTAACCGAGCAATATGTGTACGAGATCAGTCAGTGA
Done.