Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 72 of 362
Found at i:22444572 original size:94 final size:94
Alignment explanation
Indices: 22444460--22444634 Score: 260
Period size: 94 Copynumber: 1.9 Consensus size: 94
22444450 AAGCTGACGC
* *** *
22444460 CATGTCCCAGACAGGTCTTACTCTAGCTTGTCTATCTCGAGGCCGATGCATGTCCCAAACATGTC
1 CATGTCCCAGACAGGTCTTACACTAGCTTAAATATCTCGAGGCCAATGCATGTCCCAAACATGTC
*
22444525 TTACACTAGCTCTCATCTCAACACCGATG
66 TCACACTAGCTCTCATCTCAACACCGATG
* * * *
22444554 CATGTCCTAGACATGTCTTACACTGGCTTAAATATCTCGAGGCCAATGCATGTCCCAGACATGTC
1 CATGTCCCAGACAGGTCTTACACTAGCTTAAATATCTCGAGGCCAATGCATGTCCCAAACATGTC
22444619 TCACACTAGCTCTCAT
66 TCACACTAGCTCTCAT
22444635 ATTGTGGCCG
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
94 71 1.00
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.28
Consensus pattern (94 bp):
CATGTCCCAGACAGGTCTTACACTAGCTTAAATATCTCGAGGCCAATGCATGTCCCAAACATGTC
TCACACTAGCTCTCATCTCAACACCGATG
Found at i:22444683 original size:94 final size:94
Alignment explanation
Indices: 22444492--22444685 Score: 237
Period size: 94 Copynumber: 2.1 Consensus size: 94
22444482 CTAGCTTGTC
* * *
22444492 TATCTCGAGGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATCTCAACACCGATGCAT
1 TATCTCGAGGCCAATGCATGTCCCAAACATGTCTCACACTAGCTCTCATATCAACACCGATGCAT
* **
22444557 GTCCTAGACATGTCTTACACTGGCTTAAA
66 GTCCTAGACATGTCTTACACTAGCACAAA
* ***** *
22444586 TATCTCGAGGCCAATGCATGTCCCAGACATGTCTCACACTAGCTCTCATATTGTGGCCGATTCAT
1 TATCTCGAGGCCAATGCATGTCCCAAACATGTCTCACACTAGCTCTCATATCAACACCGATGCAT
* *
22444651 GT-CTCGGACATGTCTTACACTAGCACACA
66 GTCCT-AGACATGTCTTACACTAGCACAAA
22444680 TATCTC
1 TATCTC
22444686 CCAATATCTA
Statistics
Matches: 84, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
93 2 0.02
94 82 0.98
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.28
Consensus pattern (94 bp):
TATCTCGAGGCCAATGCATGTCCCAAACATGTCTCACACTAGCTCTCATATCAACACCGATGCAT
GTCCTAGACATGTCTTACACTAGCACAAA
Found at i:22446703 original size:13 final size:13
Alignment explanation
Indices: 22446685--22446711 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
22446675 GAAGTAATCA
22446685 CACACGGGCGTGT
1 CACACGGGCGTGT
22446698 CACACGGGCGTGT
1 CACACGGGCGTGT
22446711 C
1 C
22446712 CTTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:22451922 original size:48 final size:48
Alignment explanation
Indices: 22451842--22452020 Score: 191
Period size: 48 Copynumber: 3.8 Consensus size: 48
22451832 TCATATAGTG
* * * *
22451842 AGGCCGATGCCATGTCCCAGATAGGTCTTACACTAGCTTGTCTATCTCG
1 AGGCCGATG-CATGTCCCAGACATGTCTTACACTAGCTTATCTATCTCA
* * * *
22451891 AGGCCGGTGCATGTCTCAGACATGTCTTACACTAGC-TCTC-GTCTCA
1 AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTTATCTATCTCA
* ** * * * **
22451937 ACGCAAATGCATGTCCTAGACATGTCTTACATTGGCTTAAATATCTCA
1 AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTTATCTATCTCA
22451985 AGGCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 AGGCCGATGCATGTCCCAGACATGTCTTACACTAGC
22452021 ACACATATCT
Statistics
Matches: 103, Mismatches: 25, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
46 32 0.31
47 4 0.04
48 59 0.57
49 8 0.08
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (48 bp):
AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTTATCTATCTCA
Found at i:22456000 original size:21 final size:23
Alignment explanation
Indices: 22455975--22456022 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
22455965 CACGTTAGTG
22455975 AAAAATA-TATAAATAT-AAATA
1 AAAAATATTATAAATATAAAATA
*
22455996 AAAAATATTTATATATATAAAATA
1 AAAAATA-TTATAAATATAAAATA
22456020 AAA
1 AAA
22456023 TAAATTGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 7 0.30
23 8 0.35
24 8 0.35
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (23 bp):
AAAAATATTATAAATATAAAATA
Found at i:22456479 original size:20 final size:20
Alignment explanation
Indices: 22456454--22456491 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
22456444 TTAAATGAGC
22456454 AATTAAATCAATTTGATTAA
1 AATTAAATCAATTTGATTAA
*
22456474 AATTAAATTAATTTGATT
1 AATTAAATCAATTTGATT
22456492 GGAATCAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (20 bp):
AATTAAATCAATTTGATTAA
Found at i:22456501 original size:20 final size:20
Alignment explanation
Indices: 22456458--22456501 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
22456448 ATGAGCAATT
*
22456458 AAATCAATTTGATTAAAATT
1 AAATCAATTTGATTAAAATC
* **
22456478 AAATTAATTTGATTGGAATC
1 AAATCAATTTGATTAAAATC
22456498 AAAT
1 AAAT
22456502 AAAATTAGGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.48, C:0.05, G:0.09, T:0.39
Consensus pattern (20 bp):
AAATCAATTTGATTAAAATC
Found at i:22458229 original size:40 final size:39
Alignment explanation
Indices: 22458165--22458376 Score: 248
Period size: 40 Copynumber: 5.3 Consensus size: 39
22458155 TCTTCGGAAT
* *
22458165 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAT-ATCACTAGCACAAATGCCTTCGGGTC
*
22458204 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* *
22458244 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
** * *
22458284 TTAATCCGGGTATAGCAACTCA-CACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACT-AGCACAAATGCCTTCGGGTC
* * *
22458324 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGAC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
22458364 TTAGCCCGGATAT
1 TTAGCCCGGATAT
22458377 CATTCAAATG
Statistics
Matches: 146, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
39 11 0.08
40 127 0.87
41 8 0.05
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (39 bp):
TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTC
Found at i:22458303 original size:80 final size:80
Alignment explanation
Indices: 22458165--22458376 Score: 318
Period size: 80 Copynumber: 2.7 Consensus size: 80
22458155 TCTTCGGAAT
* * * * * * *
22458165 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCACAC
22458229 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* *
22458244 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAATCCGGGTATAGCAACTCACAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCACAC
22458309 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* *
22458324 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGATAT
22458377 CATTCAAATG
Statistics
Matches: 119, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 4 0.03
80 115 0.97
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCACAC
AAATGCCTTCGGGTC
Found at i:22466303 original size:40 final size:39
Alignment explanation
Indices: 22466239--22466449 Score: 255
Period size: 40 Copynumber: 5.3 Consensus size: 39
22466229 TCTTCGGAAT
* *
22466239 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAT-ATCACTAGCACAAATGCCTTCGGGTC
*
22466278 TTAGCCCGGATATATCAACTCGCACAAATGCCTTC-GGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* *
22466317 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
* * * *
22466357 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* * *
22466397 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGAC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
22466437 TTAGCCCGGATAT
1 TTAGCCCGGATAT
22466450 CATTCAAATG
Statistics
Matches: 146, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
39 41 0.28
40 102 0.70
41 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (39 bp):
TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTC
Found at i:22466365 original size:79 final size:80
Alignment explanation
Indices: 22466239--22466449 Score: 336
Period size: 79 Copynumber: 2.7 Consensus size: 80
22466229 TCTTCGGAAT
* * * * *
22466239 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
22466303 AAATGCCTTC-GGTC
66 AAATGCCTTCGGGTC
* *
22466317 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
22466382 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
*
22466397 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATAT
22466450 CATTCAAATG
Statistics
Matches: 121, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
78 4 0.03
79 63 0.52
80 54 0.45
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:22471504 original size:81 final size:83
Alignment explanation
Indices: 22471375--22471617 Score: 224
Period size: 86 Copynumber: 2.9 Consensus size: 83
22471365 CAAGTCTTCG
* * *** *****
22471375 TTTGGAAAC-AAATCAAGATCGAATAAAATTTATTAAACGGCAACAATAAATCTTGTGACAGA-T
1 TTTGGAAACAAAATCAAAATCGAATAAAATCTATTAAACGGCGGGAATAAATCCCAAAACAGATT
22471438 TATTCAATTATT-T-CTCA
66 TATTCAATT-TTATACTCA
* * *
22471455 TTTGGAAACAAAATCAAAATTGAATAAAATCTATTAAATGGCGGGAATAAATCCCAAAATAGATT
1 TTTGGAAACAAAATCAAAATCGAATAAAATCTATTAAACGGCGGGAATAAATCCCAAAACAGA-T
*
22471520 TTATTTAATTTTAATACTCA
65 TTATTCAATTTT-ATACTCA
* * * * * *
22471540 TTTGGAAACAAAATCAAAGATGGAATAAAATCTGTTGAACGGCGGGGATAAATCCCGAAATAGAT
1 TTTGGAAACAAAATCAAA-ATCGAATAAAATCTATTAAACGGCGGGAATAAATCCCAAAACAGAT
*
22471605 TTAATTTAATTTT
65 TT-ATTCAATTTT
22471618 TATTTTAATT
Statistics
Matches: 135, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
80 9 0.07
81 40 0.30
82 2 0.01
83 9 0.07
84 1 0.01
85 25 0.19
86 49 0.36
ACGTcount: A:0.43, C:0.12, G:0.14, T:0.32
Consensus pattern (83 bp):
TTTGGAAACAAAATCAAAATCGAATAAAATCTATTAAACGGCGGGAATAAATCCCAAAACAGATT
TATTCAATTTTATACTCA
Found at i:22471595 original size:86 final size:85
Alignment explanation
Indices: 22471451--22471617 Score: 262
Period size: 86 Copynumber: 2.0 Consensus size: 85
22471441 TCAATTATTT
* *
22471451 CTCATTTGGAAACAAAATCAAAATTGAATAAAATCTATTAAATGGCGGGAATAAATCCCAAAATA
1 CTCATTTGGAAACAAAATCAAAATGGAATAAAATCTATTAAACGGCGGGAATAAATCCCAAAATA
*
22471516 GATTTTATTTAATTTTAATA
66 GATTTAATTTAATTTTAATA
* * * *
22471536 CTCATTTGGAAACAAAATCAAAGATGGAATAAAATCTGTTGAACGGCGGGGATAAATCCCGAAAT
1 CTCATTTGGAAACAAAATCAAA-ATGGAATAAAATCTATTAAACGGCGGGAATAAATCCCAAAAT
22471601 AGATTTAATTTAATTTT
65 AGATTTAATTTAATTTT
22471618 TATTTTAATT
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
85 22 0.30
86 52 0.70
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.31
Consensus pattern (85 bp):
CTCATTTGGAAACAAAATCAAAATGGAATAAAATCTATTAAACGGCGGGAATAAATCCCAAAATA
GATTTAATTTAATTTTAATA
Found at i:22471624 original size:12 final size:12
Alignment explanation
Indices: 22471604--22471658 Score: 67
Period size: 12 Copynumber: 4.7 Consensus size: 12
22471594 CCGAAATAGA
*
22471604 TTTAATTTAATT
1 TTTATTTTAATT
22471616 TTTATTTTAATT
1 TTTATTTTAATT
* *
22471628 TTAATTTTTATT
1 TTTATTTTAATT
*
22471640 TTTATTTTTA-T
1 TTTATTTTAATT
22471651 TTTATTTT
1 TTTATTTT
22471659 CAAATAAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
11 9 0.23
12 30 0.77
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTATTTTAATT
Found at i:22471628 original size:6 final size:6
Alignment explanation
Indices: 22471604--22471658 Score: 60
Period size: 6 Copynumber: 9.5 Consensus size: 6
22471594 CCGAAATAGA
* * * *
22471604 TTTAA- TTTAAT TTTTAT TTTAAT TTTAAT TTTTAT TTTTAT TTTTAT
1 TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT
22471651 TTT-AT TTT
1 TTTAAT TTT
22471659 CAAATAAAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
5 10 0.22
6 36 0.78
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (6 bp):
TTTAAT
Found at i:22471632 original size:18 final size:18
Alignment explanation
Indices: 22471604--22471658 Score: 78
Period size: 18 Copynumber: 3.2 Consensus size: 18
22471594 CCGAAATAGA
22471604 TTTAA-TTTAATTTTTAT
1 TTTAATTTTAATTTTTAT
22471621 TTTAATTTTAATTTTTAT
1 TTTAATTTTAATTTTTAT
* *
22471639 TTTTATTTTTA-TTTTAT
1 TTTAATTTTAATTTTTAT
22471656 TTT
1 TTT
22471659 CAAATAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.40
18 21 0.60
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTAATTTTAATTTTTAT
Found at i:22475922 original size:31 final size:31
Alignment explanation
Indices: 22475881--22475946 Score: 114
Period size: 31 Copynumber: 2.1 Consensus size: 31
22475871 AAAGGAAGAA
*
22475881 TTTGAGATGAAAGAAATTGGAAAAATAAAGT
1 TTTGACATGAAAGAAATTGGAAAAATAAAGT
*
22475912 TTTGACATGAAAGATATTGGAAAAATAAAGT
1 TTTGACATGAAAGAAATTGGAAAAATAAAGT
22475943 TTTG
1 TTTG
22475947 TCTTGGCTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.47, C:0.02, G:0.21, T:0.30
Consensus pattern (31 bp):
TTTGACATGAAAGAAATTGGAAAAATAAAGT
Found at i:22497009 original size:39 final size:39
Alignment explanation
Indices: 22496955--22497034 Score: 133
Period size: 39 Copynumber: 2.1 Consensus size: 39
22496945 TGAAAAGAGT
* * *
22496955 AGAAAGCTTGCAAATTGCTAATATTCATTTATGGATTTA
1 AGAAAGCTTACAAATTGCTAAGATTCATTTATGGACTTA
22496994 AGAAAGCTTACAAATTGCTAAGATTCATTTATGGACTTA
1 AGAAAGCTTACAAATTGCTAAGATTCATTTATGGACTTA
22497033 AG
1 AG
22497035 CAGGTGTCCC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (39 bp):
AGAAAGCTTACAAATTGCTAAGATTCATTTATGGACTTA
Found at i:22498565 original size:68 final size:67
Alignment explanation
Indices: 22498456--22498591 Score: 254
Period size: 68 Copynumber: 2.0 Consensus size: 67
22498446 ACACAATCGC
*
22498456 AGCAAGTAATAAAGTGACAAGTAAATGTCGAGTTATCATACCCACAGGGACTGTGAAAAGAATTA
1 AGCAAGTAATAAAGTCACAAGTAAATGTCGAGTTATCATACCCAC-GGGACTGTGAAAAGAATTA
22498521 TTT
65 TTT
22498524 AGCAAGTAATAAAGTCACAAGTAAATGTCGAGTTATCATACCCACGGGACTGTGAAAAGAATTAT
1 AGCAAGTAATAAAGTCACAAGTAAATGTCGAGTTATCATACCCACGGGACTGTGAAAAGAATTAT
22498589 TT
66 TT
22498591 A
1 A
22498592 TGAATGCAAT
Statistics
Matches: 67, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
67 23 0.34
68 44 0.66
ACGTcount: A:0.41, C:0.14, G:0.20, T:0.25
Consensus pattern (67 bp):
AGCAAGTAATAAAGTCACAAGTAAATGTCGAGTTATCATACCCACGGGACTGTGAAAAGAATTAT
TT
Found at i:22501508 original size:49 final size:49
Alignment explanation
Indices: 22501451--22501617 Score: 186
Period size: 49 Copynumber: 3.5 Consensus size: 49
22501441 CAAAGTCAAG
* * *
22501451 GCCATGTCCTAGACAGGTCTTACAGTGACTTTTATATATCGAGGCCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGACTTATATATATCGAGGCCGAT
* * * *
22501500 GCCATGTCCCAGACAGGTCTTACACTGAC--ACACA-AT--AAGCTGAT
1 GCCATGTCCCAGACAGGTCTTACACTGACTTATATATATCGAGGCCGAT
* *
22501544 GCCATGTCCCAGACAGGTCTTACACT-AGCTTGTATATCTCGAGGCCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGA-CTTATATATATCGAGGCCGAT
*
22501593 G-CATGTCCCAGACATGTCTTACACT
1 GCCATGTCCCAGACAGGTCTTACACT
22501618 AGCACACATA
Statistics
Matches: 98, Mismatches: 14, Indels: 13
0.78 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 33 0.34
46 4 0.04
47 3 0.03
48 23 0.23
49 34 0.35
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (49 bp):
GCCATGTCCCAGACAGGTCTTACACTGACTTATATATATCGAGGCCGAT
Found at i:22501564 original size:93 final size:94
Alignment explanation
Indices: 22501397--22501625 Score: 272
Period size: 93 Copynumber: 2.4 Consensus size: 94
22501387 GGAATAAGAT
* * *
22501397 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTAGCAC-ATCAAAGTCAAGGCCATGTCCT
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTGAC-A-CACAAT-AAAGTCAAGGCCATGTCCC
* *
22501461 AGACAGGTCTTACAGT-GACTTTTATATATCGAG
62 AGACAGGTCTTACACTAG-CTTGTATATATCGAG
* *
22501494 GCCGATGCCATGTCCCAGACAGGTCTTACACTGACACACAAT-AAG-CTGATGCCATGTCCCAGA
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGACACACAATAAAGTC-AAGGCCATGTCCCAGA
*
22501557 CAGGTCTTACACTAGCTTGTATATCTCGAG
65 CAGGTCTTACACTAGCTTGTATATATCGAG
*
22501587 GCCGATG-CATGTCCCAGACATGTCTTACACT-AGCACACA
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGA-CACACA
22501626 TATCACCCAA
Statistics
Matches: 119, Mismatches: 9, Indels: 13
0.84 0.06 0.09
Matches are distributed among these distances:
91 1 0.01
92 30 0.25
93 48 0.40
94 4 0.03
95 3 0.03
96 13 0.11
97 20 0.17
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (94 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTGACACACAATAAAGTCAAGGCCATGTCCCAGAC
AGGTCTTACACTAGCTTGTATATATCGAG
Found at i:22501629 original size:48 final size:49
Alignment explanation
Indices: 22501484--22501629 Score: 162
Period size: 44 Copynumber: 3.1 Consensus size: 49
22501474 AGTGACTTTT
*
22501484 ATATATCGAGGCCGATGCCATGTCCCAGACAGGTCTTACACT-GACACAC
1 ATATCTCGAGGCCGATGCCATGTCCCAGACAGGTCTTACACTAG-CACAC
* * ****
22501533 A-A--T--AAGCTGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGT
1 ATATCTCGAGGCCGATGCCATGTCCCAGACAGGTCTTACACTAGCACAC
*
22501577 ATATCTCGAGGCCGATG-CATGTCCCAGACATGTCTTACACTAGCACAC
1 ATATCTCGAGGCCGATGCCATGTCCCAGACAGGTCTTACACTAGCACAC
22501625 ATATC
1 ATATC
22501630 ACCCAATGTC
Statistics
Matches: 78, Mismatches: 13, Indels: 13
0.75 0.12 0.12
Matches are distributed among these distances:
44 34 0.44
45 2 0.03
46 1 0.01
47 1 0.01
48 32 0.41
49 8 0.10
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (49 bp):
ATATCTCGAGGCCGATGCCATGTCCCAGACAGGTCTTACACTAGCACAC
Found at i:22509375 original size:46 final size:46
Alignment explanation
Indices: 22509325--22509589 Score: 385
Period size: 46 Copynumber: 5.7 Consensus size: 46
22509315 TGGTTGAGCA
22509325 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
22509371 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
22509417 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
22509463 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
22509508 CATCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
22509556 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
22509590 GGGGCGGGTT
Statistics
Matches: 197, Mismatches: 13, Indels: 18
0.86 0.06 0.08
Matches are distributed among these distances:
42 2 0.01
43 4 0.02
45 3 0.02
46 152 0.77
47 28 0.14
48 3 0.02
50 3 0.02
51 2 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:22517004 original size:46 final size:46
Alignment explanation
Indices: 22516954--22517126 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
22516944 TGGTTGAGCA
*
22516954 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAATG
* * * *
22517000 TCCGAACTTGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAA-T--G
* * *
22517045 CATCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGTATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAATG
* *
22517093 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
22517127 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.57
47 27 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAATG
Found at i:22517110 original size:93 final size:93
Alignment explanation
Indices: 22516951--22517121 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
22516941 GGATGGTTGA
* * *
22516951 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
22517016 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
22517044 GCATCCGAACTCGTTGAGTTGAGTCCGATTTCACTTATGTATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
22517109 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
22517122 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:22518828 original size:42 final size:42
Alignment explanation
Indices: 22518755--22518859 Score: 117
Period size: 42 Copynumber: 2.5 Consensus size: 42
22518745 TAGGGTTACC
* *
22518755 GAGACTAT-GTGTAAGACCATATCTGGGATATGGAATC-AATAT
1 GAGACT-TCGTGTAAGACCATATCTAGGATATGGAATCGAA-AA
* * *
22518797 TAGA-TTACGTGTAAGACCATATCTAGTATATGGCATCGAAAA
1 GAGACTT-CGTGTAAGACCATATCTAGGATATGGAATCGAAAA
22518839 GAGACTTCGTGTAAGACCATA
1 GAGACTTCGTGTAAGACCATA
22518860 GCTGGGCTAT
Statistics
Matches: 53, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
40 1 0.02
41 1 0.02
42 47 0.89
43 4 0.08
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (42 bp):
GAGACTTCGTGTAAGACCATATCTAGGATATGGAATCGAAAA
Found at i:22527345 original size:53 final size:53
Alignment explanation
Indices: 22527275--22527483 Score: 220
Period size: 53 Copynumber: 3.9 Consensus size: 53
22527265 CTTTCCTTTT
* * *
22527275 TAAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTA
1 TAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
* * * * * * *
22527328 TGAACTCACCATTGCCATGCCTTGGCATGGTCTTATATGGGATCTTTGCCTTA
1 TAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
* * * * * * *
22527381 TCATACTTTATCAATGCCATGTCTTGACATAGTCTTACATGATTTCCTTGCCTTG
1 T-AAAC-TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
* *
22527436 TAAAACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 T-AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
22527484 AAACCCTAAT
Statistics
Matches: 123, Mismatches: 31, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
53 46 0.37
54 37 0.30
55 40 0.33
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (53 bp):
TAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
Found at i:22530023 original size:21 final size:22
Alignment explanation
Indices: 22529979--22530030 Score: 61
Period size: 24 Copynumber: 2.3 Consensus size: 22
22529969 CTTCCTCTAA
22529979 AATCTTTCGAATAAGCTTCTCATC
1 AATCTTTCGAATAAG--TCTCATC
*
22530003 AATCTTTTGAATAAG-CTCATC
1 AATCTTTCGAATAAGTCTCATC
*
22530024 ATTCTTT
1 AATCTTT
22530031 GGTATACATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 12 0.46
24 14 0.54
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (22 bp):
AATCTTTCGAATAAGTCTCATC
Found at i:22534849 original size:53 final size:55
Alignment explanation
Indices: 22534785--22534929 Score: 177
Period size: 53 Copynumber: 2.7 Consensus size: 55
22534775 TTCCTTTTTA
* *
22534785 AACTTACCATTGCCATGTCTTGACACGGTCTTACATGGTATCCTTGCCTTAT-G-
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATCGT
* * * * *
22534838 AACTCACCATTGTCATGCCTTGCCATGGTCTTACATGGGATCTTTGCCTTATCGT
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATCGT
** * *
22534893 AGTTTATCAATGCCATGTCTTGACATGGTCTTACATG
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATG
22534930 ATTTCTGTAA
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
53 45 0.60
54 1 0.01
55 29 0.39
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.37
Consensus pattern (55 bp):
AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATCGT
Found at i:22536355 original size:22 final size:22
Alignment explanation
Indices: 22536329--22536373 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
22536319 ATAGAAGTAA
22536329 AAATACACACACAGAGTAAGCT
1 AAATACACACACAGAGTAAGCT
22536351 AAATACACACACAGAGTAAGCT
1 AAATACACACACAGAGTAAGCT
22536373 A
1 A
22536374 TCTTAGCTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.51, C:0.22, G:0.13, T:0.13
Consensus pattern (22 bp):
AAATACACACACAGAGTAAGCT
Found at i:22538830 original size:92 final size:92
Alignment explanation
Indices: 22538719--22538889 Score: 315
Period size: 92 Copynumber: 1.9 Consensus size: 92
22538709 CGCCCATAAG
* *
22538719 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
22538784 ACGAGTTCGGATGCCTAGTTACATTCA
66 ACGAGTTCGGATGCCTAGTTACATTCA
*
22538811 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
22538876 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
22538890 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 76 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTCA
Found at i:22538886 original size:46 final size:46
Alignment explanation
Indices: 22538712--22538886 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
22538702 TGTAACCCGC
* * *
22538712 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
22538758 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* *
22538804 ACATTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA-TAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
22538850 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
22538887 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 97 0.88
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:22538905 original size:46 final size:46
Alignment explanation
Indices: 22538720--22538905 Score: 145
Period size: 46 Copynumber: 4.0 Consensus size: 46
22538710 GCCCATAAGC
* ** * *
22538720 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T-AGT
* *
22538766 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-A-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCTAGT
* * * *
22538812 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCTAGT
22538858 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
22538904 GA
1 GA
22538906 CATGTCACTT
Statistics
Matches: 113, Mismatches: 13, Indels: 28
0.73 0.08 0.18
Matches are distributed among these distances:
44 9 0.08
45 2 0.02
46 92 0.81
47 1 0.01
48 4 0.04
49 1 0.01
50 4 0.04
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
Found at i:22546354 original size:92 final size:92
Alignment explanation
Indices: 22546243--22546414 Score: 317
Period size: 92 Copynumber: 1.9 Consensus size: 92
22546233 CGCCCATAAG
* *
22546243 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
22546308 ACGAGTTCGGATGCCTAGTTACATTCA
66 ACGAGTTCGGATGCCTAGTTACATTCA
*
22546335 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
22546400 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
22546415 CAAATATCCT
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 77 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTCA
Found at i:22546410 original size:46 final size:46
Alignment explanation
Indices: 22546236--22546410 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
22546226 TGTAACCCGC
* * *
22546236 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
22546282 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* *
22546328 ACATTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA-TAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
22546374 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
22546411 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 97 0.88
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:22547768 original size:43 final size:43
Alignment explanation
Indices: 22547699--22547807 Score: 143
Period size: 43 Copynumber: 2.5 Consensus size: 43
22547689 GATATTATAG
*
22547699 GGTCTTACAC-AAATCACA-ATTACGATGCCGATGTCCCAGACAT
1 GGTCTTACACGAAATCACATA-T-CGATGCCAATGTCCCAGACAT
* *
22547742 GGTCTTACTCGAAATCACATATCGATGCCAATGTCCCAGACGT
1 GGTCTTACACGAAATCACATATCGATGCCAATGTCCCAGACAT
22547785 GGTCTTACACGAGAA-CACATATC
1 GGTCTTACACGA-AATCACATATC
22547808 AGAAATCCTA
Statistics
Matches: 59, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
43 47 0.80
44 11 0.19
45 1 0.02
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (43 bp):
GGTCTTACACGAAATCACATATCGATGCCAATGTCCCAGACAT
Found at i:22557150 original size:15 final size:16
Alignment explanation
Indices: 22557132--22557161 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
22557122 TTATATATAC
22557132 CAAAACCA-AATTAAT
1 CAAAACCACAATTAAT
22557147 CAAAACCACAATTAA
1 CAAAACCACAATTAA
22557162 ACATAACCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.60, C:0.23, G:0.00, T:0.17
Consensus pattern (16 bp):
CAAAACCACAATTAAT
Found at i:22557169 original size:16 final size:15
Alignment explanation
Indices: 22557132--22557170 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
22557122 TTATATATAC
*
22557132 CAAAACCAAATTAAT
1 CAAAACCAAATTAAA
22557147 CAAAACCACAATTAAA
1 CAAAACCA-AATTAAA
*
22557163 CATAACCA
1 CAAAACCA
22557171 TCAAGCGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.59, C:0.26, G:0.00, T:0.15
Consensus pattern (15 bp):
CAAAACCAAATTAAA
Found at i:22560370 original size:27 final size:27
Alignment explanation
Indices: 22560340--22560489 Score: 169
Period size: 27 Copynumber: 5.6 Consensus size: 27
22560330 AATGCCTTCG
*
22560340 ATTTGTAGAATTACCATTTTACCCTCA
1 ATTTATAGAATTACCATTTTACCCTCA
*
22560367 ATTTATAGAATTACCATTTCACCCTCA
1 ATTTATAGAATTACCATTTTACCCTCA
* * *
22560394 ATTTACAGAATTACCATTTTACTCTCG
1 ATTTATAGAATTACCATTTTACCCTCA
* *
22560421 ATTTAAAAAATTACCATTTTACCCTCA
1 ATTTATAGAATTACCATTTTACCCTCA
* * * * *
22560448 GTTTACAAAATTACCGTTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCA
22560475 ATTGT-TA-AATTACCA
1 ATT-TATAGAATTACCA
22560490 AAATACCCCT
Statistics
Matches: 105, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
26 7 0.07
27 97 0.92
28 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.06, T:0.39
Consensus pattern (27 bp):
ATTTATAGAATTACCATTTTACCCTCA
Found at i:22560409 original size:54 final size:53
Alignment explanation
Indices: 22560346--22560489 Score: 191
Period size: 54 Copynumber: 2.7 Consensus size: 53
22560336 TTCGATTTGT
*
22560346 AGAATTACCATTTTACCCTCAATTTATAGAATTACCATTTCACCCTCAATTTAC
1 AGAATTACCATTTTACCCTCGATTTATA-AATTACCATTTCACCCTCAATTTAC
* * * *
22560400 AGAATTACCATTTTACTCTCGATTTAAAAAATTACCATTTTACCCTCAGTTTAC
1 AGAATTACCATTTTACCCTCGATTT-ATAAATTACCATTTCACCCTCAATTTAC
* *
22560454 AAAATTACCGTTTTACCCTCGATTGT-TAAATTACCA
1 AGAATTACCATTTTACCCTCGATT-TATAAATTACCA
22560490 AAATACCCCT
Statistics
Matches: 79, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
53 9 0.11
54 67 0.85
55 3 0.04
ACGTcount: A:0.33, C:0.24, G:0.06, T:0.38
Consensus pattern (53 bp):
AGAATTACCATTTTACCCTCGATTTATAAATTACCATTTCACCCTCAATTTAC
Found at i:22560499 original size:27 final size:27
Alignment explanation
Indices: 22560476--22560632 Score: 192
Period size: 27 Copynumber: 5.8 Consensus size: 27
22560466 TTACCCTCGA
*
22560476 TTGTTAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
*
22560503 TTGTAAAATTAACAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
* * *
22560530 TTGTAAAATTACCGAAATACCACTGGT
1 TTGTAAAATTACCAAAATACCCCTAGT
* *
22560557 TTGTGAAATTACCAAAATA-CCCTCAAT
1 TTGTAAAATTACCAAAATACCCCT-AGT
*
22560584 TTGTAAAATTACCAAAATACCCCTAAT
1 TTGTAAAATTACCAAAATACCCCTAGT
**
22560611 TTAAAAAATTA-CATAAATACCC
1 TTGTAAAATTACCA-AAATACCC
22560633 TTGACTTTTT
Statistics
Matches: 113, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
26 5 0.04
27 104 0.92
28 4 0.04
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAGT
Found at i:22560559 original size:54 final size:54
Alignment explanation
Indices: 22560476--22560688 Score: 180
Period size: 54 Copynumber: 3.9 Consensus size: 54
22560466 TTACCCTCGA
* * *
22560476 TTGTTAAATTACCAAAATACCCCTAGTTTGTAAAATTAACAAAATACCCCT-AGT
1 TTGTAAAATTACCAAAATACCACTAGTTTATAAAATT-ACAAAATACCCCTCAGT
* * * * *
22560530 TTGTAAAATTACCGAAATACCACTGGTTTGTGAAATTACCAAAATA-CCCTCAAT
1 TTGTAAAATTACCAAAATACCACTAGTTTATAAAATTA-CAAAATACCCCTCAGT
* * * * * *
22560584 TTGTAAAATTACCAAAATACCCCTAATTTAAAAAATTACATAAATACCCTTGACT
1 TTGTAAAATTACCAAAATACCACTAGTTTATAAAATTACA-AAATACCCCTCAGT
* * * * *
22560639 TTTTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTAAAATACCC
1 TTGT-AAAATTACCA-AAATACCACTAGTTTATAAAATTAC-AAAATACCC
22560689 TTGGTTTGTA
Statistics
Matches: 129, Mismatches: 23, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
53 7 0.05
54 77 0.60
55 9 0.07
56 35 0.27
57 1 0.01
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (54 bp):
TTGTAAAATTACCAAAATACCACTAGTTTATAAAATTACAAAATACCCCTCAGT
Found at i:22560592 original size:81 final size:81
Alignment explanation
Indices: 22560476--22560631 Score: 224
Period size: 81 Copynumber: 1.9 Consensus size: 81
22560466 TTACCCTCGA
* * * **
22560476 TTGTTAAATTACCAAAATACCCCTAGTTTGTAAAATTAACAAAATACCCCTAGTTTGTAAAATTA
1 TTGTGAAATTACCAAAATACCCCTAATTTGTAAAATTAACAAAATACCCCTAATTTAAAAAATTA
*
22560541 CCGAAATACCACTGGT
66 CAGAAATACCACTGGT
*
22560557 TTGTGAAATTACCAAAATA-CCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTAAAAAATT
1 TTGTGAAATTACCAAAATACCCCT-AATTTGTAAAATTAACAAAATACCCCTAATTTAAAAAATT
*
22560621 ACATAAATACC
65 ACAGAAATACC
22560632 CTTGACTTTT
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
80 4 0.06
81 62 0.94
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (81 bp):
TTGTGAAATTACCAAAATACCCCTAATTTGTAAAATTAACAAAATACCCCTAATTTAAAAAATTA
CAGAAATACCACTGGT
Found at i:22560684 original size:27 final size:26
Alignment explanation
Indices: 22560640--22560695 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 26
22560630 CCCTTGACTT
22560640 TTTAAAAATTATAGAAATACCATTGG
1 TTTAAAAATTATAGAAATACCATTGG
*
22560666 TTTACAAAATTACTA-AAATACCCTTGG
1 TTTA-AAAATTA-TAGAAATACCATTGG
22560693 TTT
1 TTT
22560696 GTAGATTTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 4 0.15
27 21 0.78
28 2 0.07
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.38
Consensus pattern (26 bp):
TTTAAAAATTATAGAAATACCATTGG
Found at i:22561822 original size:42 final size:42
Alignment explanation
Indices: 22561763--22561854 Score: 184
Period size: 42 Copynumber: 2.2 Consensus size: 42
22561753 TAGTCTCCCC
22561763 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
22561805 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
22561847 AAATGGGC
1 AAATGGGC
22561855 CTAAGGGCCA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:22561917 original size:30 final size:31
Alignment explanation
Indices: 22561877--22561953 Score: 111
Period size: 30 Copynumber: 2.5 Consensus size: 31
22561867 CCATTTACAG
22561877 AAAAGTCTTCGGCCCAATGATATGATTTATG-
1 AAAAG-CTTCGGCCCAATGATATGATTTATGA
* * *
22561908 AAATGCTTCGGCCGAGTGATATGATTTATGA
1 AAAAGCTTCGGCCCAATGATATGATTTATGA
22561939 AAAAGCTTCGGCCCA
1 AAAAGCTTCGGCCCA
22561954 GTAACCGTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
30 23 0.57
31 17 0.43
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (31 bp):
AAAAGCTTCGGCCCAATGATATGATTTATGA
Found at i:22563916 original size:42 final size:42
Alignment explanation
Indices: 22563856--22563947 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
22563846 TGGCCCATAG
* *
22563856 GCCCATTTTAATAACACATGAAATATCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
*
22563898 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
22563940 GCCCATTT
1 GCCCATTT
22563948 GGGGAGACTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.28
Consensus pattern (42 bp):
GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
Found at i:22564122 original size:25 final size:25
Alignment explanation
Indices: 22564094--22564188 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
22564084 CTCCTTTAAT
* *
22564094 AACTGGGGCAAAGCGCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
22564119 AACTGGGGCAAAGCCCTTTTCGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
22564144 AACTGGGGCAAAACCCTTTTCGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
22564169 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
22564189 AGCACTTCCT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:22564123 original size:50 final size:50
Alignment explanation
Indices: 22564069--22564184 Score: 137
Period size: 50 Copynumber: 2.3 Consensus size: 50
22564059 TTTATCATGT
* * * *
22564069 AACTGGAGGCCTAGCCTCCTTT-AAT-AACTGGGGCAAAGCGCTTTTTGATA
1 AACTGG-GGCATAGCC-CCTTTCAATAAACTGGGGCAAAACCCTTTTCGATA
* * *
22564119 AACTGGGGCAAAGCCCTTTTCGATAAACTGGGGCAAAACCCTTTTCGATA
1 AACTGGGGCATAGCCCCTTTCAATAAACTGGGGCAAAACCCTTTTCGATA
22564169 AACTGGGGCATAGCCC
1 AACTGGGGCATAGCCC
22564185 TTTTAGCACT
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
48 4 0.07
49 9 0.16
50 43 0.77
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (50 bp):
AACTGGGGCATAGCCCCTTTCAATAAACTGGGGCAAAACCCTTTTCGATA
Found at i:22565220 original size:27 final size:27
Alignment explanation
Indices: 22565151--22565212 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
22565141 CATAAGGGTA
22565151 TTACGGTCACTTTACCCTACAAGGGCT
1 TTACGGTCACTTTACCCTACAAGGGCT
* *
22565178 TTATGGTCACTTTACCCTACAGGGGCT
1 TTACGGTCACTTTACCCTACAAGGGCT
22565205 TTACGGTC
1 TTACGGTC
22565213 TTTTTACCTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.19, C:0.27, G:0.21, T:0.32
Consensus pattern (27 bp):
TTACGGTCACTTTACCCTACAAGGGCT
Found at i:22565304 original size:27 final size:27
Alignment explanation
Indices: 22565274--22565399 Score: 103
Period size: 27 Copynumber: 4.6 Consensus size: 27
22565264 GTAAATCTAC
*
22565274 AAACCAAGGGTATTTCAATAATTTTGT
1 AAACCAAGGGTATTTCTATAATTTTGT
*
22565301 AAACCAACGGTATTTCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
* *
22565327 AAAAAGTCAAGGGTATTTCTATAACTTTGT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
* ** * *
22565357 AAATCGGGGGTATTT-TGGTAATTTTAT
1 AAACCAAGGGTATTTCT-ATAATTTTGT
**
22565384 AAATTAAGGGTATTTC
1 AAACCAAGGGTATTTC
22565400 GGTAATTTCA
Statistics
Matches: 80, Mismatches: 13, Indels: 11
0.77 0.12 0.11
Matches are distributed among these distances:
26 2 0.03
27 52 0.65
28 6 0.08
29 19 0.24
30 1 0.01
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:22565379 original size:56 final size:54
Alignment explanation
Indices: 22565278--22565399 Score: 129
Period size: 56 Copynumber: 2.2 Consensus size: 54
22565268 ATCTACAAAC
*
22565278 CAAGGGTATTTCAATAATTTTGTAAACCAACGGTATTTCTATAATTTTTAAAAAGT
1 CAAGGGTATTTCAATAACTTTGTAAACCAACGGTATTTCTATAA-TTTTAAAAA-T
* * *** * *
22565334 CAAGGGTATTTCTATAACTTTGTAAATCGGGGGTATTT-TGGTAATTTTATAAAT
1 CAAGGGTATTTCAATAACTTTGTAAACCAACGGTATTTCT-ATAATTTTAAAAAT
*
22565388 TAAGGGTATTTC
1 CAAGGGTATTTC
22565400 GGTAATTTCA
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
54 12 0.21
55 9 0.16
56 35 0.62
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.41
Consensus pattern (54 bp):
CAAGGGTATTTCAATAACTTTGTAAACCAACGGTATTTCTATAATTTTAAAAAT
Found at i:22565403 original size:27 final size:27
Alignment explanation
Indices: 22565364--22565517 Score: 202
Period size: 27 Copynumber: 5.7 Consensus size: 27
22565354 TGTAAATCGG
* *
22565364 GGGTATTTTGGTAATTTTATAAATTAA
1 GGGTATTTTGGTAATTTTACAAACTAA
* * *
22565391 GGGTATTTCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAA
* *
22565418 TGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAA
* *
22565445 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAA
* *
22565472 GGGTATTTTAGCAATTTTACAAACT-A
1 GGGTATTTTGGTAATTTTACAAACTAA
22565498 GGGTATTTTGGTAATTTTAC
1 GGGTATTTTGGTAATTTTAC
22565518 TGATCGAGGG
Statistics
Matches: 111, Mismatches: 16, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 18 0.16
27 93 0.84
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAA
Found at i:22565532 original size:27 final size:26
Alignment explanation
Indices: 22565364--22565542 Score: 196
Period size: 27 Copynumber: 6.7 Consensus size: 26
22565354 TGTAAATCGG
* *
22565364 GGGTATTTTGGTAATTTTATAAATTAA
1 GGGTATTTTGGTAATTTTACAAACT-A
* * *
22565391 GGGTATTTCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAA-CTA
*
22565418 TGGTATTTTGGTAATTTTACAAACTA
1 GGGTATTTTGGTAATTTTACAAACTA
*
22565444 GGGGTATTTTAGTAATTTTACAAACTA
1 -GGGTATTTTGGTAATTTTACAAACTA
* *
22565471 GGGGTATTTTAGCAATTTTACAAACTA
1 -GGGTATTTTGGTAATTTTACAAACTA
* * *
22565498 GGGTATTTTGGTAATTTTACTGATCGA
1 GGGTATTTTGGTAATTTTAC-AAACTA
*
22565525 GGGTATTTTGGTAGTTTT
1 GGGTATTTTGGTAATTTT
22565543 GTAAACCAAT
Statistics
Matches: 131, Mismatches: 18, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
26 20 0.15
27 111 0.85
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAACTA
Found at i:22565561 original size:80 final size:80
Alignment explanation
Indices: 22565363--22565569 Score: 191
Period size: 80 Copynumber: 2.6 Consensus size: 80
22565353 TTGTAAATCG
* * ** ** * * * *
22565363 GGGGTATTTTGGTAATTTTATAAATTAAGGGTATTTCGGTAATTTCACAAACCAATGGTATTTTG
1 GGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAAA-CTAGGGTATTTTG
*
22565428 GTAATTTTACAAACTA
65 GTAATTTTACAAACGA
* *
22565444 GGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTAGCAATTTTACAAACTAGGGTATTTTGG
1 GGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAAACTAGGGTATTTTGG
* *
22565509 TAATTTTACTGATCGA
66 TAATTTTAC-AAACGA
* * ** * * *
22565525 -GGGTATTTTGGTAGTTTTGTAAACCAATGGTGTTTTAGTAATTTT
1 GGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAGCAATTTT
22565570 GTAAATCGAG
Statistics
Matches: 103, Mismatches: 22, Indels: 3
0.80 0.17 0.02
Matches are distributed among these distances:
80 57 0.55
81 46 0.45
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.43
Consensus pattern (80 bp):
GGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAAACTAGGGTATTTTGG
TAATTTTACAAACGA
Found at i:22565590 original size:27 final size:27
Alignment explanation
Indices: 22565560--22565691 Score: 192
Period size: 27 Copynumber: 4.9 Consensus size: 27
22565550 AATGGTGTTT
* *
22565560 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTATAAATCGAGGGTAAAA
* * *
22565587 TAGTAATTTTGTAAATCAAGGGTAAAA
1 TAGTAATTCTATAAATCGAGGGTAAAA
22565614 TAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTATAAATCGAGGGTAAAA
*
22565641 CAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTATAAATCGAGGGTAAAA
**
22565668 CGGTAATTCTATAAATCGAGGGTA
1 TAGTAATTCTATAAATCGAGGGTA
22565692 TTTTGATAAT
Statistics
Matches: 99, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 99 1.00
ACGTcount: A:0.42, C:0.08, G:0.20, T:0.30
Consensus pattern (27 bp):
TAGTAATTCTATAAATCGAGGGTAAAA
Found at i:22566541 original size:27 final size:27
Alignment explanation
Indices: 22566503--22566882 Score: 288
Period size: 27 Copynumber: 14.2 Consensus size: 27
22566493 CTCATCCATT
*
22566503 TACCCCTGGTTTGTAAAATTACTAAAA
1 TACCCTTGGTTTGTAAAATTACTAAAA
** *
22566530 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTGTAAAATTACTAAAA
* * *
22566557 TACCCCTAGTTTGTAAAATTACTAGAA
1 TACCCTTGGTTTGTAAAATTACTAAAA
* * * *
22566584 TACCCTTGGTCTATAAAATCACCAAAA
1 TACCCTTGGTTTGTAAAATTACTAAAA
*
22566611 TA-CCTCTGGTTTGTAAAATTAC--CAA
1 TACCCT-TGGTTTGTAAAATTACTAAAA
** *
22566636 -ACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTGTAAAATTACTAAAA
* *
22566662 TACCCCTAGTTTGTAAAATTACTAAAA
1 TACCCTTGGTTTGTAAAATTACTAAAA
* * *
22566689 TACCTTTTGTTTATAAAATTA-TCAAAA
1 TACCCTTGGTTTGTAAAATTACT-AAAA
* *
22566716 TACCAC-TGATTTGTAAAATTACCAAAA
1 TACC-CTTGGTTTGTAAAATTACTAAAA
* *
22566743 TACCCCTAGTTTGTAAAATTA-TCAAAA
1 TACCCTTGGTTTGTAAAATTACT-AAAA
* * * *
22566770 TACCCCTAGTTTTTAAAATTACCAAAA
1 TACCCTTGGTTTGTAAAATTACTAAAA
* * * *
22566797 TACCCCTGATTTGTGAAATTACTGAAA
1 TACCCTTGGTTTGTAAAATTACTAAAA
* *** * *
22566824 TACCCTCGACCTGTAAAATTATTGAAA
1 TACCCTTGGTTTGTAAAATTACTAAAA
* ** * *
22566851 TACCCTCGACTTGTAAAATTACGAAAG
1 TACCCTTGGTTTGTAAAATTACTAAAA
22566878 TACCC
1 TACCC
22566883 CTGTTTACAG
Statistics
Matches: 282, Mismatches: 60, Indels: 22
0.77 0.16 0.06
Matches are distributed among these distances:
24 15 0.05
25 5 0.02
26 7 0.02
27 255 0.90
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
TACCCTTGGTTTGTAAAATTACTAAAA
Found at i:22566586 original size:54 final size:54
Alignment explanation
Indices: 22566503--22566828 Score: 381
Period size: 54 Copynumber: 6.1 Consensus size: 54
22566493 CTCATCCATT
* *
22566503 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAA
* * *
22566557 TACCCCTAGTTTGTAAAATTACTAGAATACCCTTGGTCTATAAAATCACCAAAA
1 TACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAA
* * * *
22566611 TACCTCTGGTTTGTAAAATTAC--CAA-ACCCTTGGTTTACAAAATTACCAAAA
1 TACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAA
* * *
22566662 TACCCCTAGTTTGTAAAATTACTAAAATACCTTTTGTTTATAAAATTATCAAAA
1 TACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAA
* * * * * *
22566716 TACCACT-GATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAA
1 TACCCCTAG-TTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAA
* * * * * * **
22566770 TACCCCTAGTTTTTAAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAA
1 TACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAA
22566824 TACCC
1 TACCC
22566829 TCGACCTGTA
Statistics
Matches: 235, Mismatches: 32, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
51 43 0.18
52 2 0.01
53 3 0.01
54 186 0.79
55 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (54 bp):
TACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAA
Found at i:22566613 original size:81 final size:81
Alignment explanation
Indices: 22566503--22566828 Score: 356
Period size: 81 Copynumber: 4.1 Consensus size: 81
22566493 CTCATCCATT
* * *
22566503 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCT-AGT
1 TACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGA-T
* *
22566567 TTGTAAAATTACTAGAA
65 TTGTAAAATTACCAAAA
* * * * * * * *
22566584 TACCCTTGGTCTATAAAATCACCAAAATA-CCTCTGGTTTGTAAAATTACC--AA-ACCCTTGGT
1 TACCCCTAGTTTGTAAAATTACCAAAATACCCT-TGGTTTATAAAATTACCAAAATACCCCTGAT
**
22566645 TTACAAAATTACCAAAA
65 TTGTAAAATTACCAAAA
* * * * *
22566662 TACCCCTAGTTTGTAAAATTACTAAAATACCTTTTGTTTATAAAATTATCAAAATACCACTGATT
1 TACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGATT
22566727 TGTAAAATTACCAAAA
66 TGTAAAATTACCAAAA
* * * *
22566743 TACCCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTTTAAAATTACCAAAATACCCCTGATT
1 TACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGATT
* **
22566808 TGTGAAATTACTGAAA
66 TGTAAAATTACCAAAA
22566824 TACCC
1 TACCC
22566829 TCGACCTGTA
Statistics
Matches: 200, Mismatches: 39, Indels: 12
0.80 0.16 0.05
Matches are distributed among these distances:
78 56 0.28
79 4 0.02
80 5 0.03
81 135 0.68
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (81 bp):
TACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGATT
TGTAAAATTACCAAAA
Found at i:22566760 original size:159 final size:159
Alignment explanation
Indices: 22566503--22566795 Score: 417
Period size: 159 Copynumber: 1.8 Consensus size: 159
22566493 CTCATCCATT
* *
22566503 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTT
1 TACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCACTAGTT
* * * * * *
22566568 TGTAAAATTACTAGAATACCCTTGGTCTATAAAATCACCAAAATACCTCTGGTTTGTAAAATTAC
66 TGTAAAATTACCAAAATACCCCTAGTCTATAAAATCACCAAAATACCCCTAGTTTGTAAAATTAC
22566633 CAAACCCTTGGTTTACAAAATTACCAAAA
131 CAAACCCTTGGTTTACAAAATTACCAAAA
* * * *
22566662 TACCCCTAGTTTGTAAAATTACTAAAATACCTTTTGTTTATAAAATTATCAAAATACCACT-GAT
1 TACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCACTAG-T
* * * * *
22566726 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTTTAAAATTA
65 TTGTAAAATTACCAAAATACCCCTAGTCTATAAAATCACCAAAATACCCCTAGTTTGTAAAATTA
22566791 CCAAA
130 CCAAA
22566796 ATACCCCTGA
Statistics
Matches: 116, Mismatches: 17, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
158 1 0.01
159 115 0.99
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.33
Consensus pattern (159 bp):
TACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCACTAGTT
TGTAAAATTACCAAAATACCCCTAGTCTATAAAATCACCAAAATACCCCTAGTTTGTAAAATTAC
CAAACCCTTGGTTTACAAAATTACCAAAA
Found at i:22566955 original size:27 final size:27
Alignment explanation
Indices: 22566925--22567137 Score: 234
Period size: 27 Copynumber: 7.9 Consensus size: 27
22566915 TATAAATTAT
22566925 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
*
22566952 CGAAACACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
*
22566979 CGAAATACCC-CGTAGGGTA-AAATTAC
1 CGAAATACCCTTGTAGGGTAGAAA-TAC
** *
22567005 TAAAATACCCTTGTAGGGTAGAATTAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
* *
22567032 CGAAATACCCTTATAGGGTAGAAATAT
1 CGAAATACCCTTGTAGGGTAGAAATAC
* * *
22567059 CAAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
** * * *
22567086 TAAAAATACCCCTGTAGGGTAGAATTGC
1 -CGAAATACCCTTGTAGGGTAGAAATAC
* *
22567114 CGAGATACCCTTGTGGGGTA-AAAT
1 CGAAATACCCTTGTAGGGTAGAAAT
22567138 TACCATTTTA
Statistics
Matches: 157, Mismatches: 25, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
25 3 0.02
26 22 0.14
27 105 0.67
28 27 0.17
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (27 bp):
CGAAATACCCTTGTAGGGTAGAAATAC
Found at i:22566980 original size:80 final size:80
Alignment explanation
Indices: 22566927--22567109 Score: 285
Period size: 80 Copynumber: 2.3 Consensus size: 80
22566917 TAAATTATCG
*
22566927 AAATACCCTTGTAGGGTAGAAATACCGAAACACCCTTGTAGGGTAGAAATACCGAAATACCCCGT
1 AAATACCCTTGTAGGGTAGAAATACCGAAACACCCTTATAGGGTAGAAATACCGAAATACCCCGT
22566992 AGGGTAAAATTACTA
66 AGGGTAAAATTACTA
* * * *
22567007 AAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTATAGGGTAGAAATATCAAAATACCCCTG
1 AAATACCCTTGTAGGGTAGAAATACCGAAACACCCTTATAGGGTAGAAATACCGAAATACCCC-G
*
22567072 TAGGGTAGAATTACTAA
65 TAGGGTAAAATTACT-A
*
22567089 AAATACCCCTGTAGGGTAGAA
1 AAATACCCTTGTAGGGTAGAA
22567110 TTGCCGAGAT
Statistics
Matches: 94, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
80 58 0.62
81 15 0.16
82 21 0.22
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.23
Consensus pattern (80 bp):
AAATACCCTTGTAGGGTAGAAATACCGAAACACCCTTATAGGGTAGAAATACCGAAATACCCCGT
AGGGTAAAATTACTA
Found at i:22567443 original size:26 final size:27
Alignment explanation
Indices: 22567413--22567470 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
22567403 ATATATATAC
*
22567413 ATCTGT-TCTGGTGGCCTAGCCACAAT
1 ATCTGTATCTGGTGACCTAGCCACAAT
* * *
22567439 ATCTGTATCTGGTGACTTCGTCACAAT
1 ATCTGTATCTGGTGACCTAGCCACAAT
22567466 ATCTG
1 ATCTG
22567471 GCAGCCTCGC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 6 0.22
27 21 0.78
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (27 bp):
ATCTGTATCTGGTGACCTAGCCACAAT
Found at i:22567598 original size:6 final size:6
Alignment explanation
Indices: 22567589--22567694 Score: 92
Period size: 6 Copynumber: 17.3 Consensus size: 6
22567579 TTGCATTCAT
* *
22567589 ATTCTG ATTCTG ATTCTG -TTACTTG ATACTG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG ATT--CTG
* * * *
22567639 ATTCTG ATTCTG ATTTTG ATTTTG ATTCTG ATTCTC ATTTTG ATTCT-
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
22567686 AGTTCTG AT
1 A-TTCTG AT
22567695 AATGTTTCTT
Statistics
Matches: 82, Mismatches: 10, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
5 5 0.06
6 68 0.83
7 6 0.07
8 3 0.04
ACGTcount: A:0.19, C:0.15, G:0.14, T:0.52
Consensus pattern (6 bp):
ATTCTG
Found at i:22567652 original size:31 final size:25
Alignment explanation
Indices: 22567589--22567673 Score: 111
Period size: 25 Copynumber: 3.4 Consensus size: 25
22567579 TTGCATTCAT
22567589 ATTCTGATTCTGATTCTGTTACTTG
1 ATTCTGATTCTGATTCTGTTACTTG
* * *
22567614 ATACTGATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGTTACTTG
*
22567639 ATTCTGATTCTGATTTTGATT--TTG
1 ATTCTGATTCTGATTCTG-TTACTTG
22567663 ATTCTGATTCT
1 ATTCTGATTCT
22567674 CATTTTGATT
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
24 12 0.23
25 38 0.73
26 2 0.04
ACGTcount: A:0.19, C:0.15, G:0.14, T:0.52
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTTACTTG
Found at i:22569776 original size:27 final size:27
Alignment explanation
Indices: 22569720--22569797 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
22569710 ATACTACTGG
* *
22569720 TTTGTGAAATTACCAAAATAGCCTCAA
1 TTTGTAAAATTACCAAAATACCCTCAA
* **
22569747 TTTGTAAAATTACCATAATACCCTTGA
1 TTTGTAAAATTACCAAAATACCCTCAA
**
22569774 TTTACAAAATTA-CAGAAATACCCT
1 TTTGTAAAATTACCA-AAATACCCT
22569798 TAACTTTCTA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
26 2 0.05
27 40 0.95
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (27 bp):
TTTGTAAAATTACCAAAATACCCTCAA
Found at i:22569798 original size:27 final size:27
Alignment explanation
Indices: 22569763--22569855 Score: 98
Period size: 27 Copynumber: 3.4 Consensus size: 27
22569753 AAATTACCAT
22569763 AATACCCTTGATTTACAAAATTACAGA
1 AATACCCTTGATTTACAAAATTACAGA
* *
22569790 AATACCCTTAACTTT-CTAAAAATTATAGA
1 AATACCCTTGA-TTTAC--AAAATTACAGA
* * * *
22569819 AATACCATTGGTGTACAAAATTACTGA
1 AATACCCTTGATTTACAAAATTACAGA
22569846 AATACCCTTG
1 AATACCCTTG
22569856 GTTTGTAGAT
Statistics
Matches: 53, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
27 29 0.55
28 5 0.09
29 19 0.36
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (27 bp):
AATACCCTTGATTTACAAAATTACAGA
Found at i:22570817 original size:26 final size:26
Alignment explanation
Indices: 22570788--22570950 Score: 197
Period size: 26 Copynumber: 6.3 Consensus size: 26
22570778 GAGGAAGTGC
*
22570788 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
22570814 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* * **
22570840 GAAAGGGCTTATGCTCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
22570866 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* * **
22570892 AAAAGGGCTTACGCCTCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
22570918 -AAAGGGATTTTGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
22570941 AAAAGAGGCT
1 AAAAG-GGCT
22570951 AGGCCTCCAG
Statistics
Matches: 115, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
24 7 0.06
25 17 0.15
26 91 0.79
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:22575511 original size:25 final size:25
Alignment explanation
Indices: 22575483--22575531 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
22575473 TTATATTATG
* * *
22575483 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
22575508 AAAATGACCATTATACCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
22575532 TTTACTTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:22575592 original size:20 final size:20
Alignment explanation
Indices: 22575566--22575632 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
22575556 ATTTTGATAT
22575566 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
*
22575586 TCATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
22575606 ACTTGATATGTATGATATGC
1 ACATGATATGTATGATATGC
22575626 ACATGAT
1 ACATGAT
22575633 GTATTCATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
20 40 0.95
21 2 0.05
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.37
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:22575593 original size:11 final size:11
Alignment explanation
Indices: 22575577--22575632 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
22575567 CATGATTGAT
22575577 ATGATATGCTC
1 ATGATATGCTC
22575588 ATGATATG-T-
1 ATGATATGCTC
*
22575597 ATGATATGCAC
1 ATGATATGCTC
*
22575608 TTGATATG-T-
1 ATGATATGCTC
*
22575617 ATGATATGCAC
1 ATGATATGCTC
22575628 ATGAT
1 ATGAT
22575633 GTATTCATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
9 15 0.42
10 1 0.03
11 20 0.56
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.38
Consensus pattern (11 bp):
ATGATATGCTC
Found at i:22575600 original size:9 final size:9
Alignment explanation
Indices: 22575576--22575624 Score: 53
Period size: 9 Copynumber: 5.0 Consensus size: 9
22575566 ACATGATTGA
22575576 TATGATATG
1 TATGATATG
22575585 CTCATGATATG
1 -T-ATGATATG
22575596 TATGATATG
1 TATGATATG
*
22575605 CACTTGATATG
1 TA--TGATATG
22575616 TATGATATG
1 TATGATATG
22575625 CACATGATGT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
9 16 0.47
10 2 0.06
11 16 0.47
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (9 bp):
TATGATATG
Found at i:22575754 original size:25 final size:26
Alignment explanation
Indices: 22575682--22575779 Score: 146
Period size: 25 Copynumber: 3.8 Consensus size: 26
22575672 GAGGAAGTGC
22575682 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
22575708 AAAAAGGGCTTATGCCCCAGTTTATTG
1 -AAAAGGGCTTATGCCCCAGTTTATTG
* **
22575735 AAAAGGGCTT-TGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
22575760 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
22575780 ATTAAAGAGG
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
25 31 0.46
26 10 0.15
27 26 0.39
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:22582243 original size:27 final size:26
Alignment explanation
Indices: 22582085--22582263 Score: 162
Period size: 27 Copynumber: 6.7 Consensus size: 26
22582075 CCTCAATGTC
* **
22582085 AAATTACCGAAATACCCCTATAGGATA
1 AAATTACCAAAATACCCCTAT-TTATA
* * *
22582112 GAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTA-TTTATA
22582139 AAATTACCAAAATACCCCTAGTTTATA
1 AAATTACCAAAATACCCCTA-TTTATA
* * * *
22582166 AAATTACCAAAATACCACTGGTTTGTG
1 AAATTACCAAAATACCCCT-ATTTATA
* * *
22582193 AAATTACCGAAATAACCTCAATTTATA
1 AAATTACCAAAAT-ACCCCTATTTATA
*
22582220 AAATTACCAAAATACCCCTGATTTACA
1 AAATTACCAAAATACCCCT-ATTTATA
22582247 AAATTA-CAGAAATACCC
1 AAATTACCA-AAATACCC
22582264 TTGACTTTCT
Statistics
Matches: 124, Mismatches: 23, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
26 6 0.05
27 113 0.91
28 5 0.04
ACGTcount: A:0.44, C:0.21, G:0.08, T:0.27
Consensus pattern (26 bp):
AAATTACCAAAATACCCCTATTTATA
Found at i:22582314 original size:27 final size:27
Alignment explanation
Indices: 22582138--22582326 Score: 94
Period size: 27 Copynumber: 6.9 Consensus size: 27
22582128 CCTAGTTTGT
** * * *
22582138 AAAATTACCAAAATACCCCTAGTTTAT
1 AAAATTACTGAAATACCCTTGGTTTAA
** **
22582165 AAAATTACCAAAATACCAC-TGGTTTGT
1 AAAATTACTGAAATACC-CTTGGTTTAA
* * * *** *
22582192 GAAATTACCGAAATAACCTCAATTTAT
1 AAAATTACTGAAATACCCTTGGTTTAA
** * * *
22582219 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACTGAAATACCCTTGGTTTAA
* * *
22582246 AAAATTACAGAAATACCCTTGACTTTCTA
1 AAAATTACTGAAATACCCTTG-GTTT-AA
*
22582275 AAAATTA-TAGAAATACCATTGGTTTAA
1 AAAATTACT-GAAATACCCTTGGTTTAA
*
22582302 AAAATTACTGAAATACCTTTGGTTT
1 AAAATTACTGAAATACCCTTGGTTT
22582327 GTAGATTTAC
Statistics
Matches: 129, Mismatches: 27, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
26 1 0.01
27 102 0.79
28 8 0.06
29 18 0.14
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.31
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTGGTTTAA
Found at i:22582455 original size:27 final size:28
Alignment explanation
Indices: 22582380--22582456 Score: 90
Period size: 27 Copynumber: 2.9 Consensus size: 28
22582370 ACCCCTAATA
*
22582380 GGTAAAAAGACCGTAA-AGCCCTTGTAG
1 GGTAAAATGACCGTAATAGCCCTTGTAG
* *
22582407 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAATAGCCCTTGTAG
22582434 GGTAAAATGA-CG-AATATGCCCTT
1 GGTAAAATGACCGTAATA-GCCCTT
22582457 ATGTTCCGTA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
25 4 0.09
26 2 0.05
27 36 0.84
28 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (28 bp):
GGTAAAATGACCGTAATAGCCCTTGTAG
Found at i:22583292 original size:25 final size:24
Alignment explanation
Indices: 22583254--22583323 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 24
22583244 AAGAAGTGCT
*
22583254 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
22583278 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
*
22583303 AGAAAGGGCTTTACCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
22583324 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
24 1 0.02
25 40 0.98
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:22583336 original size:24 final size:24
Alignment explanation
Indices: 22583254--22583336 Score: 87
Period size: 25 Copynumber: 3.4 Consensus size: 24
22583244 AAGAAGTGCT
* * *
22583254 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTACCCCAGTTTATC
*
22583278 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTACCCCAGTTTATC
*
22583303 AGAAAGGGCTTTACCCCAG-TTATT
1 A-AAAGGGCTTTACCCCAGTTTATC
22583327 AAAAGAGGCT
1 AAAAG-GGCT
22583337 AGGCCTCCTG
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.19
25 38 0.73
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTACCCCAGTTTATC
Found at i:22585872 original size:27 final size:27
Alignment explanation
Indices: 22585842--22585984 Score: 182
Period size: 27 Copynumber: 5.3 Consensus size: 27
22585832 TACTGAAATG
*
22585842 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
22585869 CCCTCGATTTATAGAATTACC-GTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
22585895 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
22585922 CCCTCGATTTATAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
22585949 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTATAGAATTACCATTTTA
22585976 CCCTCGATT
1 CCCTCGATT
22585985 GTGAAATTAC
Statistics
Matches: 102, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
26 24 0.24
27 77 0.75
28 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.09, T:0.38
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:22585911 original size:53 final size:54
Alignment explanation
Indices: 22585842--22585984 Score: 200
Period size: 53 Copynumber: 2.7 Consensus size: 54
22585832 TACTGAAATG
** * *
22585842 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACC-GTTCA
1 CCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACCAGTTCA
* *
22585895 CCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACCAGTTCA
*
22585949 CCCTC-AGTTTACAAAATTACCGTTTTACCCTCGATT
1 CCCTCGA-TTTACAGAATTACCGTTTTACCCTCGATT
22585985 GTGAAATTAC
Statistics
Matches: 81, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
53 45 0.56
54 36 0.44
ACGTcount: A:0.27, C:0.26, G:0.09, T:0.38
Consensus pattern (54 bp):
CCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACCAGTTCA
Found at i:22586004 original size:80 final size:78
Alignment explanation
Indices: 22585828--22586104 Score: 236
Period size: 80 Copynumber: 3.5 Consensus size: 78
22585818 TTAGTTTACC
** * * *
22585828 AAATTACTGAAATGCCCTCGATTTGTAGAATTACCATTTTACCCTC-GATTTATAGAATTACCGT
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACCATTTTACCCTCAG-TTTATAAAATTACCGT
* *
22585892 TCACCCTCGATTTAC
65 TTACCCTCGATTT-G
**** * *
22585907 AGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTCAGTTTACAAAATTACCGT
1 A-AATTACCAAAATACCCTCGATTTGTAAAATTACCATTTTACCCTCAGTTTATAAAATTACCG-
22585972 TTTACCCTCGATTGTG
64 TTTACCCTCGATT-TG
* *** *
22585988 AAATTACCAAAATACCCT-TAGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCG
1 AAATTACCAAAATACCCTCGA-TTTGTAAAATTACCATTTTACCCTC-AGTTTATAAAATTACCG
** * *
22586051 AAATACCACTGGTTTATG
64 -TTTACC-CTCGATT-TG
*
22586069 AAATTACCAAAATACCCTCAATTTGTAAAATTACCA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACCA
22586105 AAATACCCCT
Statistics
Matches: 161, Mismatches: 29, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
79 3 0.02
80 102 0.63
81 54 0.34
82 2 0.01
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.34
Consensus pattern (78 bp):
AAATTACCAAAATACCCTCGATTTGTAAAATTACCATTTTACCCTCAGTTTATAAAATTACCGTT
TACCCTCGATTTG
Found at i:22586018 original size:53 final size:54
Alignment explanation
Indices: 22585856--22586129 Score: 184
Period size: 54 Copynumber: 5.1 Consensus size: 54
22585846 CGATTTGTAG
* * ** *
22585856 AATTACCATTTTACCCTCGATTTATAGAATTACC--GTTCACCCTC-GATTTACAG
1 AATTACCGTTTTACCCTCGATTTATAAAATTACCAAAAT-ACCCTCAG-TTTACAA
***
22585909 AATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTCAGTTTACAA
1 AATTACCGTTTTACCCTCGATTTATAAAATTACCAAAATACCCTCAGTTTACAA
* * * **
22585963 AATTACCGTTTTACCCTCGA-TTGTGAAATTACCAAAATACCCTTAGTTTGTAA
1 AATTACCGTTTTACCCTCGATTTATAAAATTACCAAAATACCCTCAGTTTACAA
**** * * * * **
22586016 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCGAAATACCACT-GGTTTATGA
1 AATTACCGTTTTACCCTCGA-TTTATAAAATTACCAAAATACC-CTCAGTTTACAA
**** * * *
22586070 AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCC-CTGATTTACAA
1 AATTACCGTTTTACCCTCGATTTATAAAATTACCAAAATACCCTCAG-TTTACAA
22586124 AATTAC
1 AATTAC
22586130 AGAAATACCC
Statistics
Matches: 185, Mismatches: 27, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
52 2 0.01
53 71 0.38
54 105 0.57
55 7 0.04
ACGTcount: A:0.35, C:0.23, G:0.08, T:0.34
Consensus pattern (54 bp):
AATTACCGTTTTACCCTCGATTTATAAAATTACCAAAATACCCTCAGTTTACAA
Found at i:22586021 original size:27 final size:27
Alignment explanation
Indices: 22585983--22586224 Score: 186
Period size: 27 Copynumber: 8.9 Consensus size: 27
22585973 TTACCCTCGA
*
22585983 TTGTGAAATTACCAAAATACCCTTAGT
1 TTGTAAAATTACCAAAATACCCTTAGT
*
22586010 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCTTAGT
* *
22586037 TTGTAAAATTACCGAAATACCAC-TGGT
1 TTGTAAAATTACCAAAATACC-CTTAGT
* * * *
22586064 TTATGAAATTACCAAAATACCCTCAAT
1 TTGTAAAATTACCAAAATACCCTTAGT
*
22586091 TTGTAAAATTACCAAAATACCCCT-GAT
1 TTGTAAAATTACCAAAATACCCTTAG-T
** *
22586118 TTACAAAATTA-CAGAAATACCCTTGACT
1 TTGTAAAATTACCA-AAATACCCTT-AGT
* * * *
22586146 TTTTAAAAACTA-CAGAAATACCATTGGT
1 TTGT-AAAATTACCA-AAATACCCTTAGT
** ** *
22586174 TTACAAAATTACTGAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCTTAGT
* * *
22586201 TTGTAGATTTACCAAAACACCCTT
1 TTGTAAAATTACCAAAATACCCTT
22586225 GTAGGATGAA
Statistics
Matches: 169, Mismatches: 38, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
26 3 0.02
27 141 0.83
28 7 0.04
29 18 0.11
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCTTAGT
Found at i:22586100 original size:81 final size:81
Alignment explanation
Indices: 22585986--22586138 Score: 245
Period size: 81 Copynumber: 1.9 Consensus size: 81
22585976 CCCTCGATTG
* * ** *
22585986 TGAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACC
1 TGAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGA-TTTACAAAATTACA
22586050 GAAATACCACTGGTTTA
65 GAAATACCACTGGTTTA
22586067 TGAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAG
1 TGAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAG
22586132 AAATACC
66 AAATACC
22586139 CTTGACTTTT
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
81 65 0.98
82 1 0.02
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (81 bp):
TGAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAG
AAATACCACTGGTTTA
Found at i:22587167 original size:25 final size:24
Alignment explanation
Indices: 22587129--22587196 Score: 82
Period size: 25 Copynumber: 2.8 Consensus size: 24
22587119 AGGAAGTGCT
*
22587129 AAAAGGGCTCTGCCCCAGCTTACC
1 AAAAGGGCTTTGCCCCAGCTTACC
* *
22587153 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGCTTACC
*
22587178 AGAAAGGACTTTGCCCCAG
1 A-AAAGGGCTTTGCCCCAG
22587197 TTATTAAAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
24 1 0.03
25 37 0.97
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGCTTACC
Found at i:22587405 original size:42 final size:42
Alignment explanation
Indices: 22587346--22587437 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
22587336 TAGTCTCCCC
* *
22587346 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTAACATTACATGTGATATTG
22587388 AAATGGGCTTGCATACATCCATTAACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTAACATTACATGTGATATTG
22587430 AAATGGGC
1 AAATGGGC
22587438 CTAAGGGCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTAACATTACATGTGATATTG
Found at i:22598872 original size:25 final size:25
Alignment explanation
Indices: 22598844--22598922 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
22598834 CTAATGGCCG
22598844 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
22598869 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
22598891 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
22598916 ATGTGAT
1 ATGTGAT
22598923 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:22598894 original size:47 final size:47
Alignment explanation
Indices: 22598828--22599213 Score: 628
Period size: 47 Copynumber: 8.1 Consensus size: 47
22598818 GAAATGATAG
22598828 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
22598875 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
22598922 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
22598971 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
22599018 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
22599067 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
22599114 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * * * *
22599163 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
22599210 TAAG
1 TAAG
22599214 TCCCAAAGGG
Statistics
Matches: 319, Mismatches: 14, Indels: 12
0.92 0.04 0.03
Matches are distributed among these distances:
47 187 0.59
49 132 0.41
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:22599002 original size:96 final size:96
Alignment explanation
Indices: 22598828--22599213 Score: 668
Period size: 96 Copynumber: 4.0 Consensus size: 96
22598818 GAAATGATAG
22598828 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
22598891 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
22598922 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
22598987 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
*
22599018 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
22599083 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * *
22599114 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* * *
22599179 ACGTGATGGATGTGAAAGTGTATAAATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
22599210 TAAG
1 TAAG
22599214 TCCCAAAGGG
Statistics
Matches: 281, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
94 36 0.13
96 245 0.87
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:22599107 original size:143 final size:144
Alignment explanation
Indices: 22598828--22599213 Score: 629
Period size: 143 Copynumber: 2.7 Consensus size: 144
22598818 GAAATGATAG
22598828 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
22598893 GTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
22598956 TGTATATATATGTGA
131 TG-ATATATATGTGA
22598971 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
22599036 GTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
22599101 TG-TATATATGTGA
131 TGATATATATGTGA
* * * * * *
22599114 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* *
22599179 ACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
64 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
22599214 TCCCAAAGGG
Statistics
Matches: 229, Mismatches: 10, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
143 138 0.60
144 1 0.00
145 90 0.39
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (144 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGATATATATGTGA
Found at i:22599388 original size:37 final size:37
Alignment explanation
Indices: 22599332--22599410 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
22599322 CTGAGCTCTA
* * *
22599332 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
22599369 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
22599406 AAGAC
1 AAGAC
22599411 TTCATAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:22601389 original size:45 final size:45
Alignment explanation
Indices: 22601333--22601419 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
22601323 TATGTAATCT
22601333 GAACACATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATCC
1 GAACACATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATCC
* *
22601378 GAACTCATTGAGTTGTGGTCTGAGTTCGTGATATATGTGACA
1 GAACACATTGAGTTGTGGTCTGAGTTCATGATATATGTGACA
22601420 CGTGTTTCGG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.34
Consensus pattern (45 bp):
GAACACATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATCC
Found at i:22605992 original size:17 final size:18
Alignment explanation
Indices: 22605970--22606003 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22605960 AGGGATTAGG
*
22605970 AATTGG-AGATCAAAAGC
1 AATTGGAAGAACAAAAGC
22605987 AATTGGAAGAACAAAAG
1 AATTGGAAGAACAAAAG
22606004 GAGAGAAAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.53, C:0.09, G:0.24, T:0.15
Consensus pattern (18 bp):
AATTGGAAGAACAAAAGC
Found at i:22614051 original size:49 final size:49
Alignment explanation
Indices: 22613930--22614117 Score: 241
Period size: 49 Copynumber: 3.8 Consensus size: 49
22613920 TGAGGTCGCA
* ** * * *
22613930 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCACG
*
22613981 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * *
22614030 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * *
22614079 TGTGTAGTACTATGTGCAGGCTACTATGTGCACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
22614118 GCTTTGGCTA
Statistics
Matches: 123, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
49 87 0.71
50 1 0.01
51 35 0.28
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:22616358 original size:13 final size:14
Alignment explanation
Indices: 22616340--22616381 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
22616330 TTTCATTTTT
22616340 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
22616353 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
22616368 ATTTTAACTAATAT
1 ATTTTAA-TAATAT
22616382 TCTTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 10 0.42
16 3 0.12
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:22616372 original size:15 final size:16
Alignment explanation
Indices: 22616345--22616374 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
22616335 TTTTTATTTT
22616345 AATAATAAATTTTAAA
1 AATAATAAATTTTAAA
22616361 AATAAT-AATTTTAA
1 AATAATAAATTTTAA
22616375 CTAATATTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
AATAATAAATTTTAAA
Found at i:22616462 original size:15 final size:17
Alignment explanation
Indices: 22616418--22616464 Score: 53
Period size: 19 Copynumber: 2.8 Consensus size: 17
22616408 ATATTAATAC
22616418 TTTAATAATAAATATTTA
1 TTTAATAATAAATA-TTA
*
22616436 TTTTAATTATAAATA-TA
1 -TTTAATAATAAATATTA
22616453 -TTAATAATAAAT
1 TTTAATAATAAAT
22616465 GTTTTGTAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 11 0.42
17 2 0.08
19 13 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TTTAATAATAAATATTA
Found at i:22617380 original size:20 final size:19
Alignment explanation
Indices: 22617353--22617408 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 19
22617343 TTAAATAAAA
22617353 AAAATTTAAAATATTTTTT
1 AAAATTTAAAATATTTTTT
*
22617372 AACAATTTAAAATAATTTTT
1 AA-AATTTAAAATATTTTTT
22617392 AAAATTTTAAAATATTT
1 AAAA-TTTAAAATATTT
22617409 ATAAAAATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 4 0.12
20 29 0.88
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (19 bp):
AAAATTTAAAATATTTTTT
Found at i:22617436 original size:22 final size:23
Alignment explanation
Indices: 22617406--22617449 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
22617396 TTTTAAAATA
22617406 TTTATAAAAATAAAAAAAATAAT
1 TTTATAAAAATAAAAAAAATAAT
* *
22617429 TTTA-AAAAATTATAAAAATAA
1 TTTATAAAAATAAAAAAAATAA
22617450 AAAAATCTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (23 bp):
TTTATAAAAATAAAAAAAATAAT
Found at i:22617442 original size:31 final size:32
Alignment explanation
Indices: 22617394--22617454 Score: 106
Period size: 31 Copynumber: 1.9 Consensus size: 32
22617384 TAATTTTTAA
*
22617394 AATTTTAAAATATTTATAAAAATAAAAAAAAT
1 AATTTTAAAATAATTATAAAAATAAAAAAAAT
22617426 AATTTTAAAA-AATTATAAAAATAAAAAAA
1 AATTTTAAAATAATTATAAAAATAAAAAAA
22617455 TCTGAAGAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
31 18 0.64
32 10 0.36
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (32 bp):
AATTTTAAAATAATTATAAAAATAAAAAAAAT
Found at i:22625997 original size:19 final size:19
Alignment explanation
Indices: 22625970--22626011 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
22625960 TTGACTAATC
*
22625970 AATATAATTATAAA-ATTA
1 AATAAAATTATAAAGATTA
22625988 TAATAAAATTATAAAGATTA
1 -AATAAAATTATAAAGATTA
22626008 AATA
1 AATA
22626012 TGAATTTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (19 bp):
AATAAAATTATAAAGATTA
Found at i:22626065 original size:36 final size:36
Alignment explanation
Indices: 22626021--22626092 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
22626011 ATGAATTTTA
22626021 GACCTAATAAAATGACCAAAACTTAAACATCATCTT
1 GACCTAATAAAATGACCAAAACTTAAACATCATCTT
22626057 GACCTAATAAAATGACCAAAACTTAAACATCATCTT
1 GACCTAATAAAATGACCAAAACTTAAACATCATCTT
22626093 TTTTCTTATC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.47, C:0.22, G:0.06, T:0.25
Consensus pattern (36 bp):
GACCTAATAAAATGACCAAAACTTAAACATCATCTT
Found at i:22626873 original size:60 final size:59
Alignment explanation
Indices: 22626770--22626942 Score: 206
Period size: 60 Copynumber: 2.9 Consensus size: 59
22626760 TTAATATAAC
* * * *
22626770 ATTTAGTACTTGAACTTGACACTTTTTTCTAATTTGATGCCTAAACTTCTTTTTGGCCCA
1 ATTTAGTAATTGAACTTGACACTTTTTTTTAATTTGGTACCTAAACTT-TTTTTGGCCCA
* *
22626830 ATTTGGTATTTGAACTTGACACTTTTTTTTAATTTGGTACCTAAACTTTTTTTTGGCCCA
1 ATTTAGTAATTGAACTTGACACTTTTTTTTAATTTGGTACCTAAAC-TTTTTTTGGCCCA
* * * *
22626890 ATTTAGTAACTGAACTTG--ATTTTTTTTCCTAATTTGGTACTTAAGCTTTTTTT
1 ATTTAGTAATTGAACTTGACACTTTTTTT--TAATTTGGTACCTAAACTTTTTTT
22626943 AAGTTCAATT
Statistics
Matches: 99, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
58 8 0.08
59 7 0.07
60 82 0.83
61 2 0.02
ACGTcount: A:0.23, C:0.16, G:0.12, T:0.50
Consensus pattern (59 bp):
ATTTAGTAATTGAACTTGACACTTTTTTTTAATTTGGTACCTAAACTTTTTTTGGCCCA
Found at i:22632334 original size:23 final size:22
Alignment explanation
Indices: 22632285--22632335 Score: 57
Period size: 23 Copynumber: 2.3 Consensus size: 22
22632275 TTTATTTTCA
* * *
22632285 AAAATTTAATCTTTTTACTTTT
1 AAAATTTAATATTGTTACTATT
*
22632307 TAAATTTAATAATTGTTACTATT
1 AAAATTTAAT-ATTGTTACTATT
22632330 AAAATT
1 AAAATT
22632336 CTTTTGTCAA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.39, C:0.06, G:0.02, T:0.53
Consensus pattern (22 bp):
AAAATTTAATATTGTTACTATT
Found at i:22633094 original size:14 final size:14
Alignment explanation
Indices: 22633075--22633113 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
22633065 TTGTTTTAGT
*
22633075 GAAAATGATTTTTA
1 GAAAATAATTTTTA
*
22633089 GAAAATAATTTTTG
1 GAAAATAATTTTTA
22633103 GAAAATAATTT
1 GAAAATAATTT
22633114 ATGTTTTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.13, T:0.41
Consensus pattern (14 bp):
GAAAATAATTTTTA
Found at i:22633138 original size:18 final size:20
Alignment explanation
Indices: 22633096--22633139 Score: 56
Period size: 18 Copynumber: 2.3 Consensus size: 20
22633086 TTAGAAAATA
*
22633096 ATTTTTGGAAAATAATTTAT
1 ATTTTTGGAAAATAATTAAT
*
22633116 GTTTTT-GAAAA-AATTAAT
1 ATTTTTGGAAAATAATTAAT
22633134 ATTTTT
1 ATTTTT
22633140 TGATATTTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 11 0.52
19 5 0.24
20 5 0.24
ACGTcount: A:0.39, C:0.00, G:0.09, T:0.52
Consensus pattern (20 bp):
ATTTTTGGAAAATAATTAAT
Found at i:22633139 original size:19 final size:18
Alignment explanation
Indices: 22633096--22633142 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 18
22633086 TTAGAAAATA
*
22633096 ATTTTTGGAAAATAATTT
1 ATTTTTTGAAAATAATTT
22633114 ATGTTTTTGAAAA-AATTAAT
1 AT-TTTTTGAAAATAATT--T
22633134 ATTTTTTGA
1 ATTTTTTGA
22633143 TATTTAGATG
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 6 0.24
19 16 0.64
20 3 0.12
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (18 bp):
ATTTTTTGAAAATAATTT
Found at i:22633591 original size:15 final size:15
Alignment explanation
Indices: 22633571--22633622 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
22633561 ACTACAAAAC
22633571 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
22633586 ATTTATAATTGTAATACAT
1 ATTTATTA-T-TAAT--AT
*
22633605 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
22633620 ATT
1 ATT
22633623 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:22633646 original size:19 final size:19
Alignment explanation
Indices: 22633622--22633665 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
22633612 ATTAAAATAT
22633622 TAATATTGAATATTTTCAA
1 TAATATTGAATATTTTCAA
*
22633641 TAATATTGAATATTTTTAA
1 TAATATTGAATATTTTCAA
22633660 TAATAT
1 TAATAT
22633666 GTGAGTAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (19 bp):
TAATATTGAATATTTTCAA
Found at i:22633705 original size:16 final size:16
Alignment explanation
Indices: 22633674--22633710 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
22633664 ATGTGAGTAA
22633674 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
22633690 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
22633706 TATTA
1 TATTA
22633711 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:22633777 original size:16 final size:16
Alignment explanation
Indices: 22633756--22633788 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
22633746 AATAACTTAT
*
22633756 ATTTATTATATTAATA
1 ATTTATTATATGAATA
22633772 ATTTATTATATGAATA
1 ATTTATTATATGAATA
22633788 A
1 A
22633789 ATATAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (16 bp):
ATTTATTATATGAATA
Found at i:22636199 original size:93 final size:93
Alignment explanation
Indices: 22636087--22636257 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
22636077 GCCCATAAGT
* *
22636087 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
22636152 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
22636180 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
22636245 CGAGTTCGGATGC
66 CGAGCTCGGATGC
22636258 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:22636254 original size:46 final size:46
Alignment explanation
Indices: 22636079--22636254 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
22636069 TGTAACCCGC
* *
22636079 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
22636125 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
22636171 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
22636218 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
22636255 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:22643195 original size:24 final size:24
Alignment explanation
Indices: 22643167--22643227 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
22643157 AACCGAATTT
* * *
22643167 GCACACATAGTGCTA-ATTATACTC
1 GCACACATAGTGCCATAGTAAAC-C
22643191 GCACACATAGTGCCATAGTAAACC
1 GCACACATAGTGCCATAGTAAACC
22643215 GCACACATAGTGC
1 GCACACATAGTGC
22643228 ATTGGATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.21
Consensus pattern (24 bp):
GCACACATAGTGCCATAGTAAACC
Found at i:22646501 original size:42 final size:41
Alignment explanation
Indices: 22646446--22646638 Score: 145
Period size: 42 Copynumber: 4.5 Consensus size: 41
22646436 AAGCCATGTC
*
22646446 CCCA-ACATAGTCTTACATGGGTCTACATATCGATGCCATAT
1 CCCAGACATGGTCTTACATGGGTCT-CATATCGATGCCATAT
* * * * * *
22646487 CCCAAATATGGTCTTATATGAAGTCTCATGTCGGTGTCGATGCCATGT
1 CCCAGACATGGTCTTACATG-GGTCTCA------TATCGATGCCATAT
* * *
22646535 CCCAGACATGGTCTTACACGGGACCTCATATCGATGCCATGT
1 CCCAGACATGGTCTTACATGGG-TCTCATATCGATGCCATAT
* * * * *
22646577 CCTAGACATGGTCTTACACGGAATCTCATATCAATGACATAT
1 CCCAGACATGGTCTTACATGG-GTCTCATATCGATGCCATAT
*
22646619 CCCAGATATGGTCTTACATG
1 CCCAGACATGGTCTTACATG
22646639 AAATCACATA
Statistics
Matches: 120, Mismatches: 22, Indels: 19
0.75 0.14 0.12
Matches are distributed among these distances:
41 4 0.03
42 79 0.66
43 4 0.03
47 1 0.01
48 32 0.27
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (41 bp):
CCCAGACATGGTCTTACATGGGTCTCATATCGATGCCATAT
Found at i:22646563 original size:48 final size:48
Alignment explanation
Indices: 22646524--22646840 Score: 214
Period size: 48 Copynumber: 6.8 Consensus size: 48
22646514 ATGTCGGTGT
22646524 CGATGCCATGTCCCAGACATGGTCTTACACGGGACCTC--AT--AT--
1 CGATGCCATGTCCCAGACATGGTCTTACACGGGACCTCATATCGATGC
* * *
22646566 CGATGCCATGTCCTAGACATGGTCTTACACGGAATCTCATATC-A---
1 CGATGCCATGTCCCAGACATGGTCTTACACGGGACCTCATATCGATGC
* * * * ** * * *
22646610 --ATGACATATCCCAGATATGGTCTTACATGAAATCACATACCGATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACGGGACCTCATATCGATGC
* * * * * *
22646656 CGATGCCATATCCCAGATATGGTCTTACACTGG-CATACATATCAATAC
1 CGATGCCATGTCCCAGACATGGTCTTACACGGGACCT-CATATCGATGC
* ** *
22646704 CGATGCCATGTCCCAGACATGGTTTTACACTAG-CTCTCATCTCAGATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACGGGAC-CTCATATC-GATGC
* * ** * ** *
22646753 CGATGCCATGTCCCAGGCATGGTCTTATACTAG-CACACATATTAACGC
1 CGATGCCATGTCCCAGACATGGTCTTACACGGGAC-CTCATATCGATGC
*
22646801 CGATGCCATGTCCCAGACATGGTCTTACACGGGATCTCAT
1 CGATGCCATGTCCCAGACATGGTCTTACACGGGACCTCAT
22646841 TAATCGTGGT
Statistics
Matches: 217, Mismatches: 45, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
42 68 0.31
43 1 0.00
44 2 0.01
45 1 0.00
48 105 0.48
49 40 0.18
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.26
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACGGGACCTCATATCGATGC
Found at i:22646604 original size:90 final size:90
Alignment explanation
Indices: 22646438--22646605 Score: 207
Period size: 90 Copynumber: 1.9 Consensus size: 90
22646428 GAATGCTAAA
* * *
22646438 GCCATGTCCCCAACATAGTCTTACATGGGTCTACATATCGATGCCATATCCCAAATATGGTCTTA
1 GCCATGTCCCCAACATAGTCTTACACGGGCCTACATATCGATGCCATATCCCAAACATGGTCTTA
* *
22646503 TATGAAGTCTCATGTCGGTGTCGAT
66 CAGGAAGTCTCATGTCGGTGTCGAT
* * * *
22646528 GCCATGT-CCCAGACATGGTCTTACACGGGACCT-CATATCGATGCCATGTCCTAGACATGGTCT
1 GCCATGTCCCCA-ACATAGTCTTACACGGG-CCTACATATCGATGCCATATCCCAAACATGGTCT
22646591 TACACGGAA-TCTCAT
64 TACA-GGAAGTCTCAT
22646606 ATCAATGACA
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
89 4 0.06
90 57 0.86
91 5 0.08
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.29
Consensus pattern (90 bp):
GCCATGTCCCCAACATAGTCTTACACGGGCCTACATATCGATGCCATATCCCAAACATGGTCTTA
CAGGAAGTCTCATGTCGGTGTCGAT
Found at i:22646839 original size:97 final size:97
Alignment explanation
Indices: 22646524--22646840 Score: 270
Period size: 97 Copynumber: 3.4 Consensus size: 97
22646514 ATGTCGGTGT
* * * *
22646524 CGATGCCATGTCCCAGACATGGTCTTACACGGGA---C--CTCATAT--CGATGCCATGTCCTAG
1 CGATGCCATGTCCCAGACATGGTCTTACACGAGATCTCATCTCAGATGCCGATGCCATATCCCAG
* * *
22646582 ACATGGTCTTACAC-GGAATCTCATAT---CA-
66 ACATGGTCTTACACTAGCA-CACATATCAACAC
* * * * * *
22646610 --ATGACATATCCCAGATATGGTCTTACATGAAATCACATAC-C-GATGCCGATGCCATATCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACGAGATCTCAT-CTCAGATGCCGATGCCATATCCCA
* * * *
22646671 GATATGGTCTTACACTGGCATACATATCAATAC
65 GACATGGTCTTACACTAGCACACATATCAACAC
* * * *
22646704 CGATGCCATGTCCCAGACATGGTTTTACACTAGCTCTCATCTCAGATGCCGATGCCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACGAGATCTCATCTCAGATGCCGATGCCATATCCCAG
* * * *
22646769 GCATGGTCTTATACTAGCACACATATTAACGC
66 ACATGGTCTTACACTAGCACACATATCAACAC
*
22646801 CGATGCCATGTCCCAGACATGGTCTTACACGGGATCTCAT
1 CGATGCCATGTCCCAGACATGGTCTTACACGAGATCTCAT
22646841 TAATCGTGGT
Statistics
Matches: 178, Mismatches: 36, Indels: 23
0.75 0.15 0.10
Matches are distributed among these distances:
84 26 0.15
87 1 0.01
88 2 0.01
89 1 0.01
90 33 0.19
91 3 0.02
93 1 0.01
95 1 0.01
96 30 0.17
97 80 0.45
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.26
Consensus pattern (97 bp):
CGATGCCATGTCCCAGACATGGTCTTACACGAGATCTCATCTCAGATGCCGATGCCATATCCCAG
ACATGGTCTTACACTAGCACACATATCAACAC
Found at i:22654166 original size:132 final size:130
Alignment explanation
Indices: 22653837--22654231 Score: 461
Period size: 131 Copynumber: 3.0 Consensus size: 130
22653827 GGATTTGGAG
* * * *
22653837 AACATGAGTGAAATTCTAAAGGAATATTTGATTATTTTGAACAAA-CAGGAGATCGCAACCCAAC
1 AACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAATGA-GAAATCGCAACCCAGC
* * *
22653901 ACGATAGGGCACGATTCCCCGAATTGCCAAACATCAAACATTACCTTCGGTTTAGAGAATTTTTA
65 ACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATCACCTTCGTTTTA-AGAATTTTTA
22653966 AA
129 AA
* * * * * * *
22653968 GACATGAGTGAAATTCCAAAGGAATATTCGATTGTTTTGAACGAATGGGAAATCACAACCTAGCA
1 AACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAATGAGAAATCGCAACCCAGCA
** * ** *
22654033 CGATAGGGCACGATTCTGCGAATTACCAAACATCGAGTATCACCTTTGTTTTGAAGAATTTTTAG
66 CGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATCACCTTCGTTTT-AAGAATTTTTA-
22654098 AA
129 AA
* * * *
22654100 AACATG-GATGAAATTCTAAAGGGACATTCGATTATTTTGAGCAAATGAGAAATTGCAACCCAGC
1 AACATGAG-TGAAATTCTAAAGGAATATTCGATTATTTTGAACAAATGAGAAATCGCAACCCAGC
* * * **
22654164 ACGTTAGGACACGATTCCCCGAATTGCCAAATATCGAACATCGTCTTCGTTTTAAAGAATTTTTA
65 ACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATCACCTTCGTTTT-AAGAATTTTTA
22654229 AA
129 AA
22654231 A
1 A
22654232 GAATGATTAT
Statistics
Matches: 217, Mismatches: 43, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
131 110 0.51
132 107 0.49
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.27
Consensus pattern (130 bp):
AACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAATGAGAAATCGCAACCCAGCA
CGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATCACCTTCGTTTTAAGAATTTTTAAA
Found at i:22655619 original size:19 final size:20
Alignment explanation
Indices: 22655577--22655620 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
22655567 GTGCACATAC
*
22655577 AAATAAATATATATTTATAG
1 AAATAAATATATATTTACAG
22655597 AAATAAATA-ATATTGTACA-
1 AAATAAATATATATT-TACAG
22655616 AAATA
1 AAATA
22655621 TTAAAACAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (20 bp):
AAATAAATATATATTTACAG
Done.