Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 73 of 362
Found at i:22657688 original size:50 final size:48
Alignment explanation
Indices: 22657608--22657714 Score: 135
Period size: 50 Copynumber: 2.2 Consensus size: 48
22657598 TTCCGCTTGT
* *
22657608 TGATTTTTTGTAAAATAATTATGTATTTTTAAATATTTTATGTCTTTTTC
1 TGATTTTTTGAAAAATAATTATGTATTTTTAAAT-TTTT-TGTATTTTTC
* * *
22657658 TGATTTTTT-AAAAATAATATTTGTTTTTTTAGATTTTTTGTATTTTTC
1 TGATTTTTTGAAAAATAAT-TATGTATTTTTAAATTTTTTGTATTTTTC
22657706 TGATTTTTT
1 TGATTTTTT
22657715 TAATTAAAAT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
48 18 0.35
49 12 0.24
50 21 0.41
ACGTcount: A:0.25, C:0.03, G:0.08, T:0.64
Consensus pattern (48 bp):
TGATTTTTTGAAAAATAATTATGTATTTTTAAATTTTTTGTATTTTTC
Found at i:22657703 original size:18 final size:17
Alignment explanation
Indices: 22657677--22657714 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
22657667 AAAAATAATA
22657677 TTTGTTTTTT-TAGATTT
1 TTTGTTTTTTCT-GATTT
22657694 TTTGTATTTTTCTGATTT
1 TTTGT-TTTTTCTGATTT
22657712 TTT
1 TTT
22657715 TAATTAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
18 13 0.68
19 1 0.05
ACGTcount: A:0.11, C:0.03, G:0.11, T:0.76
Consensus pattern (17 bp):
TTTGTTTTTTCTGATTT
Found at i:22657715 original size:49 final size:50
Alignment explanation
Indices: 22657608--22657717 Score: 138
Period size: 49 Copynumber: 2.2 Consensus size: 50
22657598 TTCCGCTTGT
*
22657608 TGATTTTTTGT-AAAATAATTATGTATTTTTAAATATTTTATGTCTTTTTC
1 TGATTTTTT-TAAAAATAATTATGTATTTTTAAATATTTTATGTATTTTTC
* * *
22657658 TGA-TTTTTTAAAAATAATATTTGTTTTTTTAGAT-TTTT-TGTATTTTTC
1 TGATTTTTTTAAAAATAAT-TATGTATTTTTAAATATTTTATGTATTTTTC
22657706 TGATTTTTTTAA
1 TGATTTTTTTAA
22657718 TTAAAATCAA
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
48 13 0.25
49 25 0.47
50 15 0.28
ACGTcount: A:0.26, C:0.03, G:0.08, T:0.63
Consensus pattern (50 bp):
TGATTTTTTTAAAAATAATTATGTATTTTTAAATATTTTATGTATTTTTC
Found at i:22660138 original size:21 final size:20
Alignment explanation
Indices: 22660112--22660153 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
22660102 GTTAGCGAAC
22660112 AAATATATAAATATAAATAAA
1 AAATATATAAATA-AAATAAA
* *
22660133 AAATATTTATATAAAATAAA
1 AAATATATAAATAAAATAAA
22660153 A
1 A
22660154 TAAATATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (20 bp):
AAATATATAAATAAAATAAA
Found at i:22660210 original size:29 final size:29
Alignment explanation
Indices: 22660174--22660232 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
22660164 TATTTAAATT
22660174 ATTAGATACGAAAAACCAATAAGATTATG
1 ATTAGATACGAAAAACCAATAAGATTATG
*
22660203 ATTAGATATGAAAAACCAATAAGATTATG
1 ATTAGATACGAAAAACCAATAAGATTATG
22660232 A
1 A
22660233 AAACCAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.53, C:0.08, G:0.14, T:0.25
Consensus pattern (29 bp):
ATTAGATACGAAAAACCAATAAGATTATG
Found at i:22664623 original size:18 final size:18
Alignment explanation
Indices: 22664596--22664635 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
22664586 CAGGTAGGTC
*
22664596 TCCTAGCCCTTATATGTA
1 TCCTAACCCTTATATGTA
*
22664614 TCCTAACCCTTATATGTT
1 TCCTAACCCTTATATGTA
22664632 TCCT
1 TCCT
22664636 TTTCTCAGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.20, C:0.30, G:0.07, T:0.42
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:22665160 original size:8 final size:9
Alignment explanation
Indices: 22665143--22665173 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
22665133 TTTAATAAGG
22665143 TAATATTTT
1 TAATATTTT
22665152 TAATATTTT
1 TAATATTTT
22665161 T-ATATTTT
1 TAATATTTT
22665169 TAATA
1 TAATA
22665174 AAATATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (9 bp):
TAATATTTT
Found at i:22668357 original size:126 final size:126
Alignment explanation
Indices: 22668198--22668454 Score: 388
Period size: 126 Copynumber: 2.0 Consensus size: 126
22668188 CCACTGTAGA
* * *
22668198 AAAAAGAGCGTCCACGTGGGAGCTTTTTTTAGTAATTTTGCTGACAGTGCATCCTGCTTGAAGCG
1 AAAAAGAGCATCCACGTGGGAGCTTTTTCTAGTAATTTTACTGACAGTGCATCCTGCTTGAAGCG
* * * * * *
22668263 TTTTGGACACTATTTGTTTAGAAATGTCTTCTCAAAATTATTTTTTCAAATACTACTATAG
66 TCTTAGACACTATGTGTTCAGAAACGTCATCTCAAAATTATTTTTTCAAATACTACTATAG
* * *
22668324 AAAAAGAGTATCCATGTGGGAGCTTTTTCTAGTAATTTTACTGATAGTGCATCCTGCTTGAAGCG
1 AAAAAGAGCATCCACGTGGGAGCTTTTTCTAGTAATTTTACTGACAGTGCATCCTGCTTGAAGCG
* *
22668389 TCTTAGACACTATGTGTTCAGAAACGTCATCTCAAAATTATTTTTTCAGATACTACTGTAG
66 TCTTAGACACTATGTGTTCAGAAACGTCATCTCAAAATTATTTTTTCAAATACTACTATAG
22668450 AAAAA
1 AAAAA
22668455 AATAAATAGT
Statistics
Matches: 117, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
126 117 1.00
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (126 bp):
AAAAAGAGCATCCACGTGGGAGCTTTTTCTAGTAATTTTACTGACAGTGCATCCTGCTTGAAGCG
TCTTAGACACTATGTGTTCAGAAACGTCATCTCAAAATTATTTTTTCAAATACTACTATAG
Found at i:22670160 original size:2 final size:2
Alignment explanation
Indices: 22670087--22670151 Score: 94
Period size: 2 Copynumber: 32.5 Consensus size: 2
22670077 TAGAAGGATA
* * * *
22670087 TG TG TG TG TG TG TG TG TA TG TG TA TG TG TA TA TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
22670129 TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG T
22670152 CTATGTGTGA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 57 1.00
ACGTcount: A:0.06, C:0.00, G:0.43, T:0.51
Consensus pattern (2 bp):
TG
Found at i:22671721 original size:63 final size:60
Alignment explanation
Indices: 22671645--22671787 Score: 178
Period size: 63 Copynumber: 2.3 Consensus size: 60
22671635 ATCGACCATC
* *
22671645 ATCAAACTATGAAAATGGATAGCTTCTGCTATCAAATTATAAAAAAAAAGGATAGCTTCAACT
1 ATCAAATTATGAAAATGGATAGCTTCAGCTATCAAATTAT---AAAAAAGGATAGCTTCAACT
* * * **
22671708 ATCAAATTATGAAAATGGATAGCTTCAGCTGTCAAATTATGAAAAGGGATAGCTTCGGCT
1 ATCAAATTATGAAAATGGATAGCTTCAGCTATCAAATTATAAAAAAGGATAGCTTCAACT
* *
22671768 ATCAAATTATGGAAAGGGAT
1 ATCAAATTATGAAAATGGAT
22671788 GGTGACGACC
Statistics
Matches: 71, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
60 34 0.48
63 37 0.52
ACGTcount: A:0.42, C:0.13, G:0.18, T:0.27
Consensus pattern (60 bp):
ATCAAATTATGAAAATGGATAGCTTCAGCTATCAAATTATAAAAAAGGATAGCTTCAACT
Found at i:22671730 original size:30 final size:30
Alignment explanation
Indices: 22671645--22671877 Score: 200
Period size: 30 Copynumber: 7.7 Consensus size: 30
22671635 ATCGACCATC
* * *
22671645 ATCAAACTATGAAAATGGATAGCTTCTGCT
1 ATCAAATTATGAAAAGGGATAGCTTCAGCT
* * *
22671675 ATCAAATTATAAAAAAAAAGGATAGCTTCAACT
1 ATCAAATTAT---GAAAAGGGATAGCTTCAGCT
*
22671708 ATCAAATTATGAAAATGGATAGCTTCAGCT
1 ATCAAATTATGAAAAGGGATAGCTTCAGCT
* *
22671738 GTCAAATTATGAAAAGGGATAGCTTCGGCT
1 ATCAAATTATGAAAAGGGATAGCTTCAGCT
* * * *
22671768 ATCAAATTATGGAAAGGGAT-G-GTGACGACC
1 ATCAAATTATGAAAAGGGATAGCTTCA-G-CT
** * **
22671798 ATTGAACTATGAAAAGGGATAGCTTTGGCT
1 ATCAAATTATGAAAAGGGATAGCTTCAGCT
* * * * *
22671828 GTCGAATTATAAAAAGAGATAGCTTCGGCT
1 ATCAAATTATGAAAAGGGATAGCTTCAGCT
22671858 ATCAAATTATGAAAAGGGAT
1 ATCAAATTATGAAAAGGGAT
22671878 GGTGACGACC
Statistics
Matches: 161, Mismatches: 35, Indels: 14
0.77 0.17 0.07
Matches are distributed among these distances:
28 1 0.01
29 2 0.01
30 129 0.80
31 2 0.01
32 1 0.01
33 26 0.16
ACGTcount: A:0.40, C:0.12, G:0.21, T:0.27
Consensus pattern (30 bp):
ATCAAATTATGAAAAGGGATAGCTTCAGCT
Found at i:22671809 original size:60 final size:60
Alignment explanation
Indices: 22671739--22671979 Score: 209
Period size: 60 Copynumber: 4.0 Consensus size: 60
22671729 GCTTCAGCTG
* * * *
22671739 TCAAATTATGAAAAGGGATAGCTTCGGCTATCAAATTATGGAAAGGGATGGTGACGACCA
1 TCAAAATATGAAAAGGGATAGCTTCGACTATCGAATTATGAAAAGGGATGGTGACGACCA
** * * * * * * * * * *
22671799 TTGAACTATGAAAAGGGATAGCTTTGGCTGTCGAATTATAAAAAGAGATAGCT-TCGGCTA
1 TCAAAATATGAAAAGGGATAGCTTCGACTATCGAATTATGAAAAGGGAT-GGTGACGACCA
* * * * *
22671859 TCAAATTATGAAAAGGGAT-GGTGACGACCATC-AACTATGAAAAGGGATGGTGACGACCA
1 TCAAAATATGAAAAGGGATAGCT-TCGACTATCGAATTATGAAAAGGGATGGTGACGACCA
* * * * *
22671918 TCAAAATATGAAAAGGGGTAGCTTCGACTATTGAATCATGAAAAGGGATAGTGACAACCA
1 TCAAAATATGAAAAGGGATAGCTTCGACTATCGAATTATGAAAAGGGATGGTGACGACCA
22671978 TC
1 TC
22671980 GTGGTTTTAC
Statistics
Matches: 137, Mismatches: 39, Indels: 10
0.74 0.21 0.05
Matches are distributed among these distances:
58 2 0.01
59 42 0.31
60 91 0.66
61 2 0.01
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.23
Consensus pattern (60 bp):
TCAAAATATGAAAAGGGATAGCTTCGACTATCGAATTATGAAAAGGGATGGTGACGACCA
Found at i:22671843 original size:90 final size:89
Alignment explanation
Indices: 22671715--22671906 Score: 303
Period size: 90 Copynumber: 2.1 Consensus size: 89
22671705 ACTATCAAAT
* * * *
22671715 TATGAAAATGGATAGCTTCAGCTGTCAAATTATGAAAAGGGATAGCTTCGGCTATCAAATTATGG
1 TATGAAAAGGGATAGCTTCAGCTGTCAAATTATAAAAAGAGATAGCTTCGGCTATCAAATTATGA
*
22671780 AAAGGGATGGTGACGACCATTGAAC
66 AAAGGGATGGTGACGACCA-TCAAC
** *
22671805 TATGAAAAGGGATAGCTTTGGCTGTCGAATTATAAAAAGAGATAGCTTCGGCTATCAAATTATGA
1 TATGAAAAGGGATAGCTTCAGCTGTCAAATTATAAAAAGAGATAGCTTCGGCTATCAAATTATGA
22671870 AAAGGGATGGTGACGACCATCAAC
66 AAAGGGATGGTGACGACCATCAAC
22671894 TATGAAAAGGGAT
1 TATGAAAAGGGAT
22671907 GGTGACGACC
Statistics
Matches: 94, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
89 17 0.18
90 77 0.82
ACGTcount: A:0.37, C:0.12, G:0.26, T:0.25
Consensus pattern (89 bp):
TATGAAAAGGGATAGCTTCAGCTGTCAAATTATAAAAAGAGATAGCTTCGGCTATCAAATTATGA
AAAGGGATGGTGACGACCATCAAC
Found at i:22671892 original size:30 final size:30
Alignment explanation
Indices: 22671644--22671968 Score: 158
Period size: 30 Copynumber: 10.8 Consensus size: 30
22671634 TATCGACCAT
* * *
22671644 CATCAAACTATGAAAATGGATAGCTTCTG-C
1 CATCAAATTATGAAAAGGGATAGCTAC-GAC
* * * * *
22671674 TATCAAATTATAAAAAAAAAGGATAGCTTCAAC
1 CATCAAATTAT---GAAAAGGGATAGCTACGAC
* * *
22671707 TATCAAATTATGAAAATGGATAGCTTC-AGC
1 CATCAAATTATGAAAAGGGATAGCTACGA-C
** * *
22671737 TGTCAAATTATGAAAAGGGATAGCTTCGGC
1 CATCAAATTATGAAAAGGGATAGCTACGAC
* * *
22671767 TATCAAATTATGGAAAGGGAT-GGTGACGAC
1 CATCAAATTATGAAAAGGGATAGCT-ACGAC
** * ** *
22671797 CATTGAACTATGAAAAGGGATAGCTTTGGC
1 CATCAAATTATGAAAAGGGATAGCTACGAC
** * * * * *
22671827 TGTCGAATTATAAAAAGAGATAGCTTCGGC
1 CATCAAATTATGAAAAGGGATAGCTACGAC
* *
22671857 TATCAAATTATGAAAAGGGAT-GGTGACGAC
1 CATCAAATTATGAAAAGGGATAGCT-ACGAC
* *
22671887 CATC-AACTATGAAAAGGGAT-GGTGACGAC
1 CATCAAATTATGAAAAGGGATAGCT-ACGAC
* * *
22671916 CATCAAAATATGAAAAGGGGTAGCTTCGAC
1 CATCAAATTATGAAAAGGGATAGCTACGAC
* ** *
22671946 TATTGAATCATGAAAAGGGATAG
1 CATCAAATTATGAAAAGGGATAG
22671969 TGACAACCAT
Statistics
Matches: 234, Mismatches: 50, Indels: 22
0.76 0.16 0.07
Matches are distributed among these distances:
29 33 0.14
30 171 0.73
31 4 0.02
33 26 0.11
ACGTcount: A:0.39, C:0.13, G:0.23, T:0.25
Consensus pattern (30 bp):
CATCAAATTATGAAAAGGGATAGCTACGAC
Found at i:22671903 original size:29 final size:30
Alignment explanation
Indices: 22671858--22671934 Score: 129
Period size: 29 Copynumber: 2.6 Consensus size: 30
22671848 AGCTTCGGCT
*
22671858 ATCAAATTATGAAAAGGGATGGTGACGACC
1 ATCAAAATATGAAAAGGGATGGTGACGACC
*
22671888 ATC-AACTATGAAAAGGGATGGTGACGACC
1 ATCAAAATATGAAAAGGGATGGTGACGACC
22671917 ATCAAAATATGAAAAGGG
1 ATCAAAATATGAAAAGGG
22671935 GTAGCTTCGA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
29 28 0.64
30 16 0.36
ACGTcount: A:0.43, C:0.13, G:0.26, T:0.18
Consensus pattern (30 bp):
ATCAAAATATGAAAAGGGATGGTGACGACC
Found at i:22673418 original size:16 final size:16
Alignment explanation
Indices: 22673397--22673427 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22673387 TTTATGAATT
22673397 ATTTTGAATCTTTTGA
1 ATTTTGAATCTTTTGA
*
22673413 ATTTTGAATGTTTTG
1 ATTTTGAATCTTTTG
22673428 TGATGTAAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.03, G:0.16, T:0.58
Consensus pattern (16 bp):
ATTTTGAATCTTTTGA
Found at i:22674765 original size:21 final size:21
Alignment explanation
Indices: 22674741--22674802 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
22674731 CCCTTGTTGT
22674741 ACTTCGGTACCCCTGAATTAC
1 ACTTCGGTACCCCTGAATTAC
** * *
22674762 ACTTATGTGCCCCTG-TTGTAC
1 ACTTCGGTACCCCTGAAT-TAC
22674783 A--TCGGTACCCCTGAATTAC
1 ACTTCGGTACCCCTGAATTAC
22674802 A
1 A
22674803 GTTACATGCC
Statistics
Matches: 31, Mismatches: 8, Indels: 6
0.69 0.18 0.13
Matches are distributed among these distances:
19 13 0.42
20 2 0.06
21 16 0.52
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.31
Consensus pattern (21 bp):
ACTTCGGTACCCCTGAATTAC
Found at i:22674765 original size:40 final size:40
Alignment explanation
Indices: 22674711--22674896 Score: 210
Period size: 40 Copynumber: 4.6 Consensus size: 40
22674701 CTTAATTATA
*
22674711 CCCTGAATTGCACTTACGTGCCCTTGTTGTACTTCGGTAC
1 CCCTGAATTACACTTACGTGCCCTTGTTGTACTTCGGTAC
* * *
22674751 CCCTGAATTACACTTATGTGCCCCTGTTGTACATCGGTAC
1 CCCTGAATTACACTTACGTGCCCTTGTTGTACTTCGGTAC
* * * *
22674791 CCCTGAATTACAGTTACATGCCCCTGTTGTACTTTGGTAC
1 CCCTGAATTACACTTACGTGCCCTTGTTGTACTTCGGTAC
* * * * * * *
22674831 CCCTAAATTTCACTTATGTGCCCCTTTTTATAATTCAGTAC
1 CCCTGAATTACACTTACGTG-CCCTTGTTGTACTTCGGTAC
*
22674872 CCCTGAATTACACATACGTGTCCCT
1 CCCTGAATTACACTTACGTG-CCCT
22674897 GTTTACACTC
Statistics
Matches: 120, Mismatches: 25, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
40 86 0.72
41 34 0.28
ACGTcount: A:0.20, C:0.30, G:0.15, T:0.35
Consensus pattern (40 bp):
CCCTGAATTACACTTACGTGCCCTTGTTGTACTTCGGTAC
Found at i:22674802 original size:19 final size:20
Alignment explanation
Indices: 22674744--22674802 Score: 50
Period size: 19 Copynumber: 3.0 Consensus size: 20
22674734 TTGTTGTACT
22674744 TCGGTACCCCTGAATTACAC
1 TCGGTACCCCTGAATTACAC
** * *
22674764 TTATGTGCCCCTG-TTGTACA-
1 -TCGGTACCCCTGAAT-TACAC
22674784 TCGGTACCCCTGAATTACA
1 TCGGTACCCCTGAATTACA
22674803 GTTACATGCC
Statistics
Matches: 28, Mismatches: 8, Indels: 6
0.67 0.19 0.14
Matches are distributed among these distances:
19 13 0.46
20 2 0.07
21 13 0.46
ACGTcount: A:0.22, C:0.31, G:0.17, T:0.31
Consensus pattern (20 bp):
TCGGTACCCCTGAATTACAC
Found at i:22674813 original size:80 final size:81
Alignment explanation
Indices: 22674711--22674899 Score: 238
Period size: 80 Copynumber: 2.3 Consensus size: 81
22674701 CTTAATTATA
* * * *
22674711 CCCTGAATTGCACTTACGTGCCCTTGTTGTACTTCGGTACCCCTGAATTACACTTATGTGCCCCT
1 CCCTGAATTACACTTACATGCCCCTGTTGTACTTCGGTACCCCTAAATTACACTTATGTGCCCCT
* *
22674776 GTTGTA-CA-TCGGTAC
66 -TTGTATAATTCAGTAC
* * *
22674791 CCCTGAATTACAGTTACATGCCCCTGTTGTACTTTGGTACCCCTAAATTTCACTTATGTGCCCCT
1 CCCTGAATTACACTTACATGCCCCTGTTGTACTTCGGTACCCCTAAATTACACTTATGTGCCCCT
*
22674856 TTTTATAATTCAGTAC
66 TTGTATAATTCAGTAC
* * *
22674872 CCCTGAATTACACATACGTGTCCCTGTT
1 CCCTGAATTACACTTACATGCCCCTGTT
22674900 TACACTCCGA
Statistics
Matches: 93, Mismatches: 14, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
79 4 0.04
80 59 0.63
81 30 0.32
ACGTcount: A:0.20, C:0.29, G:0.15, T:0.35
Consensus pattern (81 bp):
CCCTGAATTACACTTACATGCCCCTGTTGTACTTCGGTACCCCTAAATTACACTTATGTGCCCCT
TTGTATAATTCAGTAC
Found at i:22677342 original size:48 final size:48
Alignment explanation
Indices: 22677286--22677379 Score: 161
Period size: 48 Copynumber: 2.0 Consensus size: 48
22677276 TATCTGCAAG
* *
22677286 TCTGCCAAAGGTAGTCAACAATCCGTATATCTTCTTACGTGATTATGA
1 TCTGCCAAAGGTAATCAACAATCCGTATATCTTCTTACATGATTATGA
*
22677334 TCTGCCAAAGGTAATCAACAATCCGTATATCTTCTTGCATGATTAT
1 TCTGCCAAAGGTAATCAACAATCCGTATATCTTCTTACATGATTAT
22677380 CTTTGTTATG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (48 bp):
TCTGCCAAAGGTAATCAACAATCCGTATATCTTCTTACATGATTATGA
Found at i:22678216 original size:19 final size:19
Alignment explanation
Indices: 22678188--22678224 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
22678178 AATGCATTAC
*
22678188 TAGTATTACACCAAATAAT
1 TAGTACTACACCAAATAAT
*
22678207 TAGTACTACACCACATAA
1 TAGTACTACACCAAATAA
22678225 AAGCATTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.46, C:0.22, G:0.05, T:0.27
Consensus pattern (19 bp):
TAGTACTACACCAAATAAT
Found at i:22679356 original size:28 final size:27
Alignment explanation
Indices: 22679324--22679381 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 27
22679314 ATATAATCAA
22679324 TCTACATAGTTTGTAAAATTTCCTCTCT
1 TCTACATAGTTTGTAAAATTTCCTCT-T
22679352 TCTACATAGTTTGTAAAATTTCCTCTT
1 TCTACATAGTTTGTAAAATTTCCTCTT
22679379 TCT
1 TCT
22679382 TAGCAGACCA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 4 0.13
28 26 0.87
ACGTcount: A:0.24, C:0.21, G:0.07, T:0.48
Consensus pattern (27 bp):
TCTACATAGTTTGTAAAATTTCCTCTT
Found at i:22682249 original size:39 final size:39
Alignment explanation
Indices: 22682199--22682285 Score: 156
Period size: 39 Copynumber: 2.2 Consensus size: 39
22682189 GACTTAATGT
*
22682199 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
1 CTAGCAGGCCTCGTACCGGTGATAAATTCAGGTTTATAC
*
22682238 CTAGCAGGCCTCGTACCGGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTCGTACCGGTGATAAATTCAGGTTTATAC
22682277 CTAGCAGGC
1 CTAGCAGGC
22682286 TAATTGCAGG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.26
Consensus pattern (39 bp):
CTAGCAGGCCTCGTACCGGTGATAAATTCAGGTTTATAC
Found at i:22690669 original size:42 final size:42
Alignment explanation
Indices: 22690584--22690674 Score: 101
Period size: 42 Copynumber: 2.2 Consensus size: 42
22690574 CTAACTCTTT
* * * * **
22690584 TGAGCTTCTGTTTAATCCTTATGGGTTTTTGTTCAGCTTTTA
1 TGAGCTTCCGTTCAAACCTTATGGGTTTCTGTTCAGCACTTA
* *
22690626 TGAGCTTCCGTTCAAACTTTATGGGTTTCTGTTGAGCACTTA
1 TGAGCTTCCGTTCAAACCTTATGGGTTTCTGTTCAGCACTTA
*
22690668 TGTGCTT
1 TGAGCTT
22690675 TTGTTTAGCC
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.15, C:0.16, G:0.21, T:0.47
Consensus pattern (42 bp):
TGAGCTTCCGTTCAAACCTTATGGGTTTCTGTTCAGCACTTA
Found at i:22693532 original size:13 final size:15
Alignment explanation
Indices: 22693503--22693544 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
22693493 AGAATTTGGT
22693503 AGAGAACAGAGAAGA
1 AGAGAACAGAGAAGA
22693518 AGAGAA-AGA-AAGA
1 AGAGAACAGAGAAGA
*
22693531 AGAAGAAGAGAGAA
1 AG-AGAACAGAGAA
22693545 AAAAATGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 6 0.25
14 7 0.29
15 9 0.38
16 2 0.08
ACGTcount: A:0.64, C:0.02, G:0.33, T:0.00
Consensus pattern (15 bp):
AGAGAACAGAGAAGA
Found at i:22693559 original size:22 final size:21
Alignment explanation
Indices: 22693510--22693559 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
22693500 GGTAGAGAAC
*
22693510 AGAGAAGAAGAGAAAGAAAGA
1 AGAGAAGAAGAGAAAAAAAGA
22693531 AGAAGAAG-AGAGAAAAAAATGAA
1 AG-AGAAGAAGAGAAAAAAA-G-A
22693554 AGAGAA
1 AGAGAA
22693560 TAAGTGGAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 12 0.48
22 10 0.40
23 3 0.12
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.02
Consensus pattern (21 bp):
AGAGAAGAAGAGAAAAAAAGA
Found at i:22696355 original size:49 final size:49
Alignment explanation
Indices: 22696230--22696359 Score: 134
Period size: 51 Copynumber: 2.6 Consensus size: 49
22696220 CTTAGGCTCT
* * * * * **
22696230 TAGTTCACAGTGGTTATATGGTTACGGGTTAAAGTATAACTAAGGCTTC
1 TAGTTGACAGTGGTTATGTGGTCACAGGTTAAAGCATAACTAAGGCCCC
* * * **
22696279 TAGTTGACGATATGGTTATGTAGTCACAGGTTGAAGCATAACTCGGGCCCC
1 TAGTTGAC-A-GTGGTTATGTGGTCACAGGTTAAAGCATAACTAAGGCCCC
22696330 TAGTTGACAGTGGTTATGTGGTCACAGGTT
1 TAGTTGACAGTGGTTATGTGGTCACAGGTT
22696360 CAATTTCCAT
Statistics
Matches: 65, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
49 26 0.40
50 2 0.03
51 37 0.57
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (49 bp):
TAGTTGACAGTGGTTATGTGGTCACAGGTTAAAGCATAACTAAGGCCCC
Found at i:22699197 original size:47 final size:44
Alignment explanation
Indices: 22699085--22699298 Score: 178
Period size: 47 Copynumber: 4.7 Consensus size: 44
22699075 GGAGAATTGT
* * * * * *
22699085 GTGCTAGTTTAAGACATGTCTGGAACATGCATCAGCCACATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTA-A-GATGA
* * *
22699131 GAGCCAGTGGAAGACCATGTCTGGGACATGGCATCGGTGTAGAGATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CTA-AGATGA
* * *
22699179 GTGCCAATGTAAGACATGTTTGGGACATGCATCGGCCTCAACAATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CT-AA-GATGA
* * **
22699226 -TAGCCAGTATAAGACGTGTCTGGGACATGCATCGGCTAAGATTT
1 GT-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAAGATGA
*
22699270 GTGCTAGTGTAAGACATGTCTGGGACATG
1 GTGCCAGTGTAAGACATGTCTGGGACATG
22699299 TATCAGCATG
Statistics
Matches: 134, Mismatches: 27, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
44 26 0.19
45 3 0.02
46 22 0.16
47 60 0.45
48 21 0.16
49 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (44 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAAGATGA
Found at i:22700780 original size:20 final size:20
Alignment explanation
Indices: 22700755--22700795 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
22700745 AACCATGGCG
*
22700755 GATGACGTGGAAAGTAATGC
1 GATGACATGGAAAGTAATGC
22700775 GATGACATGGAAAGTAATGC
1 GATGACATGGAAAGTAATGC
22700795 G
1 G
22700796 CCGGCTCCGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.37, C:0.10, G:0.34, T:0.20
Consensus pattern (20 bp):
GATGACATGGAAAGTAATGC
Found at i:22702665 original size:9 final size:9
Alignment explanation
Indices: 22702651--22702678 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
22702641 GGCCCCCACT
22702651 GAGTTGAAA
1 GAGTTGAAA
22702660 GAGTTGAAA
1 GAGTTGAAA
22702669 GAGTTGAAA
1 GAGTTGAAA
22702678 G
1 G
22702679 TACAGTTGCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.36, T:0.21
Consensus pattern (9 bp):
GAGTTGAAA
Found at i:22710103 original size:47 final size:46
Alignment explanation
Indices: 22710035--22710298 Score: 212
Period size: 47 Copynumber: 5.6 Consensus size: 46
22710025 TTTGTGTGCT
**
22710035 AGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATAAGATGAGAGCC
* * * *
22710081 AGTGTAAGAGCATGTCTGGGACAGGGCATC-GGCATAGAGATGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACA-TGCATCAGCCATA-AGATGAGAGCC
* *
22710129 AGTGTAAGACATGTCTGGGACATGCATCAGCC-TCAACAATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAT-AA-GATGAGAGCC
* * * * ** * *
22710176 AGTATAAGACGTGGCTGGGACATGGCATC-G-GATAAGATTTGTGCT
1 AGTGTAAGACATGTCTGGGACAT-GCATCAGCCATAAGATGAGAGCC
* * ***
22710221 AGTGTAAGACATGTCTAGGACATGCATCAGCACGTCCTTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGC-CAT-AAGATGAGAGCC
*
22710269 AGTGTAAGACCATGTTTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
22710299 GGCAACTTAT
Statistics
Matches: 167, Mismatches: 37, Indels: 24
0.73 0.16 0.11
Matches are distributed among these distances:
44 5 0.03
45 24 0.14
46 18 0.11
47 63 0.38
48 40 0.24
49 12 0.07
50 5 0.03
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCATAAGATGAGAGCC
Found at i:22710194 original size:94 final size:93
Alignment explanation
Indices: 22710030--22710300 Score: 314
Period size: 94 Copynumber: 2.9 Consensus size: 93
22710020 GGAGATTTGT
** *
22710030 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAG-CCATATTATGAGAGCCAGTGTAAGAGCAT
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCCATACAATGAGAGCCAGTATAAGAGCAT
*
22710094 GTCTGGGACAGGGCATCGGCATAGAGATGA
66 GGCTGGGACAGGGCATCGG-ATA-AGATGA
* *
22710124 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCA-ACAATGATAGCCAGTATAAGA-CG
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCC-CATACAATGAGAGCCAGTATAAGAGCA
* **
22710187 TGGCTGGGACATGGCATCGGATAAGATTT
65 TGGCTGGGACAGGGCATCGGATAAGATGA
* * * * * * *
22710216 GTGCTAGTGTAAGACATGTCTAGGACATGCATCAGCACGTCCTTATGAGAGCCAGTGTAAGACCA
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCCATAC-AATGAGAGCCAGTATAAGAGCA
** *
22710281 TGTTTGGGACATGGCATCGG
65 TGGCTGGGACAGGGCATCGG
22710301 CAACTTATCC
Statistics
Matches: 153, Mismatches: 19, Indels: 10
0.84 0.10 0.05
Matches are distributed among these distances:
91 1 0.01
92 40 0.26
93 19 0.12
94 73 0.48
95 18 0.12
96 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (93 bp):
GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCCATACAATGAGAGCCAGTATAAGAGCAT
GGCTGGGACAGGGCATCGGATAAGATGA
Found at i:22720839 original size:12 final size:12
Alignment explanation
Indices: 22720806--22720840 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
22720796 TGAGACAAGA
22720806 TATTCTTTAAAT
1 TATTCTTTAAAT
*
22720818 TACTCTTTTAAAT
1 TATTC-TTTAAAT
22720831 TATTCTTTAA
1 TATTCTTTAA
22720841 GTAACATAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.31, C:0.11, G:0.00, T:0.57
Consensus pattern (12 bp):
TATTCTTTAAAT
Found at i:22720989 original size:22 final size:22
Alignment explanation
Indices: 22720943--22720989 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
22720933 ACGTAGGTTG
*
22720943 TATATTATTTTTTATAATATTA
1 TATATTATTTTTTATAATATCA
22720965 TATATTATTTTTTATTAAT-TCA
1 TATATTATTTTTTA-TAATATCA
22720987 TAT
1 TAT
22720990 TTTAATAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (22 bp):
TATATTATTTTTTATAATATCA
Found at i:22721033 original size:61 final size:59
Alignment explanation
Indices: 22720961--22721117 Score: 169
Period size: 61 Copynumber: 2.6 Consensus size: 59
22720951 TTTTTATAAT
** **
22720961 ATTATATATTATTTTTTATT-AATTCATATTTTAATAAT-TGTTATATTAAGAATATTATTAA
1 ATTATATATTATTTTTTATTAAATT-ATA-TTTAATAATAAATT-TATTAA-AATAGAATTAA
*
22721022 ATTATATATTA--TTATAGTTAAATTATATTTAATAATAAATTTATTAAAATAGAATTAA
1 ATTATATATTATTTTTTA-TTAAATTATATTTAATAATAAATTTATTAAAATAGAATTAA
*
22721080 ATTATGTATTATTATTTTTATTAAATTATATTTAATAA
1 ATTATATATTA-T-TTTTTATTAAATTATATTTAATAA
22721118 AATCCTATTA
Statistics
Matches: 82, Mismatches: 7, Indels: 14
0.80 0.07 0.14
Matches are distributed among these distances:
58 19 0.23
59 19 0.23
60 7 0.09
61 33 0.40
62 4 0.05
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (59 bp):
ATTATATATTATTTTTTATTAAATTATATTTAATAATAAATTTATTAAAATAGAATTAA
Found at i:22721311 original size:16 final size:16
Alignment explanation
Indices: 22721290--22721327 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
22721280 TTGAATTGCT
*
22721290 ATTACAGTTCTATTCC
1 ATTACAGCTCTATTCC
22721306 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
22721322 ATTACA
1 ATTACA
22721328 CTGAACCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.29, C:0.26, G:0.05, T:0.39
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:22728236 original size:12 final size:12
Alignment explanation
Indices: 22728219--22728243 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22728209 ATTTGGTGAC
22728219 TCTTGTGTTGAA
1 TCTTGTGTTGAA
22728231 TCTTGTGTTGAA
1 TCTTGTGTTGAA
22728243 T
1 T
22728244 GTGTGGAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.24, T:0.52
Consensus pattern (12 bp):
TCTTGTGTTGAA
Found at i:22729851 original size:30 final size:31
Alignment explanation
Indices: 22729810--22729867 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
22729800 TTTCCGAGCC
22729810 TAGGGGAAAAATCGTAATTCTG-CAAAGGTT
1 TAGGGGAAAAATCGTAATTCTGCCAAAGGTT
* * *
22729840 TAGGGGCAAAATTGTAATTTTGCCAAAG
1 TAGGGGAAAAATCGTAATTCTGCCAAAG
22729868 TTTGAGTTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.36, C:0.10, G:0.26, T:0.28
Consensus pattern (31 bp):
TAGGGGAAAAATCGTAATTCTGCCAAAGGTT
Found at i:22730545 original size:45 final size:45
Alignment explanation
Indices: 22730495--22730580 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
22730485 ATTGACGGTT
22730495 AAGGATACC-ATGTAAGACCATGTCAAGACATGGCATTGGCAAGGC
1 AAGGAT-CCTATGTAAGACCATGTCAAGACATGGCATTGGCAAGGC
22730540 AAGGATCCTATGTAAGACCATGTCAAGACATGGCATTGGCA
1 AAGGATCCTATGTAAGACCATGTCAAGACATGGCATTGGCA
22730581 TTGATTAAGG
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
44 2 0.05
45 38 0.95
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.20
Consensus pattern (45 bp):
AAGGATCCTATGTAAGACCATGTCAAGACATGGCATTGGCAAGGC
Found at i:22730793 original size:55 final size:54
Alignment explanation
Indices: 22730671--22730867 Score: 245
Period size: 55 Copynumber: 3.6 Consensus size: 54
22730661 TTGGTAAGAT
* * * *
22730671 AAGGATATCATGTAGGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * * *
22730725 AAGGAAATCATGTAAGACCATGTCAAGACATGACATTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGG-C
* * *
22730781 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
*
22730833 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
22730868 ATGGTAAGTT
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
52 4 0.03
53 33 0.27
54 40 0.33
55 41 0.34
56 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:22730879 original size:53 final size:54
Alignment explanation
Indices: 22730671--22730878 Score: 240
Period size: 53 Copynumber: 3.9 Consensus size: 54
22730661 TTGGTAAGAT
* * *
22730671 AAGGATATCATGTAGGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * * * *
22730725 AAGGAAATCATGTAAGACCATGTCAAGACATGACATTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGG-C
* * * *
22730781 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * *
22730833 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
22730879 AAAAAGGAAA
Statistics
Matches: 131, Mismatches: 20, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
52 4 0.03
53 42 0.32
54 40 0.31
55 41 0.31
56 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:22736375 original size:41 final size:40
Alignment explanation
Indices: 22736226--22736411 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
22736216 TCGAATGATG
* * * *
22736226 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
22736266 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
22736306 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
22736345 TCCGGGTTAAGTCCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCCGAAGGCATTTGTGCGAGTTACTA-AA
*
22736387 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
22736412 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 13, Indels: 12
0.84 0.09 0.08
Matches are distributed among these distances:
39 35 0.28
40 48 0.38
41 42 0.33
42 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:22736433 original size:80 final size:80
Alignment explanation
Indices: 22736279--22736434 Score: 210
Period size: 80 Copynumber: 1.9 Consensus size: 80
22736269 GGACTAAGAT
* **
22736279 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
22736344 ATCCGGGTTAAGTCC
66 ATCCGGGTTAAGTCC
* *
22736359 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
22736422 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
22736435 ATTCCGAAGG
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
79 2 0.03
80 41 0.61
81 24 0.36
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTCC
Found at i:22740767 original size:55 final size:54
Alignment explanation
Indices: 22740646--22740844 Score: 188
Period size: 55 Copynumber: 3.7 Consensus size: 54
22740636 ATAAAGATAT
* * * * *
22740646 CATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTT-CTATAAGGCACGGAAAT
1 CATGTAAGACCATGCCAAGACATGGCATTGATAAGTTACTATAAGGCAAGG-TAC
* *
22740700 CATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGACAAGGTCC
1 CATGTAAGACCATGCCAAGACATGGCATTGATAAGTTACTATAAGG-CAAGGTAC
* * * * * *
22740755 CATGTAAGACCATGCCATGGCATGACATTGGTGAGTTA--ATAAGGCAATGATAC
1 CATGTAAGACCATGCCAAGACATGGCATTGATAAGTTACTATAAGGCAA-GGTAC
** * * *
22740808 CACATAAGACCATGTCAAGACATGGTAATGATAAGTT
1 CATGTAAGACCATGCCAAGACATGGCATTGATAAGTT
22740845 CAAAAAGGAA
Statistics
Matches: 117, Mismatches: 25, Indels: 7
0.79 0.17 0.05
Matches are distributed among these distances:
52 3 0.03
53 36 0.31
54 34 0.29
55 40 0.34
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.24
Consensus pattern (54 bp):
CATGTAAGACCATGCCAAGACATGGCATTGATAAGTTACTATAAGGCAAGGTAC
Found at i:22740840 original size:108 final size:109
Alignment explanation
Indices: 22740646--22740844 Score: 283
Period size: 108 Copynumber: 1.8 Consensus size: 109
22740636 ATAAAGATAT
* * * * **
22740646 CATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTATAAGGCACGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGACATTGGTAAGTTCAATAAGGCAAGGAAACCACATAAGACC
*
22740711 ATGTCAAGACATGGCATTGATAAGTTACTATAAGGACAAGGTCC
66 ATGTCAAGACATGGCAATGATAAGTTACTATAAGGACAAGGTCC
* * * *
22740755 CATGTAAGACCATGCCATGGCATGACATTGGTGAGTT-AATAAGGCAATGATACCACATAAGACC
1 CATGTAAGACCATGCCAAGGCATGACATTGGTAAGTTCAATAAGGCAAGGAAACCACATAAGACC
*
22740819 ATGTCAAGACATGGTAATGATAAGTT
66 ATGTCAAGACATGGCAATGATAAGTT
22740845 CAAAAAGGAA
Statistics
Matches: 78, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
108 44 0.56
109 34 0.44
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.24
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGGCATGACATTGGTAAGTTCAATAAGGCAAGGAAACCACATAAGACC
ATGTCAAGACATGGCAATGATAAGTTACTATAAGGACAAGGTCC
Found at i:22743098 original size:21 final size:21
Alignment explanation
Indices: 22743069--22743123 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
22743059 CACTGTGCCC
*
22743069 ACACGCCCGTGTGATCTAGGG
1 ACACCCCCGTGTGATCTAGGG
* *
22743090 CCACCCCCGTGTGATTTAGGG
1 ACACCCCCGTGTGATCTAGGG
*
22743111 ACACGCCCGTGTG
1 ACACCCCCGTGTG
22743124 GTCGGGCTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.16, C:0.33, G:0.31, T:0.20
Consensus pattern (21 bp):
ACACCCCCGTGTGATCTAGGG
Found at i:22747454 original size:42 final size:42
Alignment explanation
Indices: 22747368--22747474 Score: 117
Period size: 42 Copynumber: 2.5 Consensus size: 42
22747358 GTTTCAATGT
* * * * *
22747368 CATATCCCCGATATGGTCTTACATGAAATATCATATCGATGC
1 CATATCCCCAACATGGTCTTATATGAAATATCATACCGAGGC
*
22747410 CATGTCCCCAACATGGTCTTATATGAAATCA-CATACCGAGGC
1 CATATCCCCAACATGGTCTTATATGAAAT-ATCATACCGAGGC
** *
22747452 CATATCCCGGATATGGTCTTATA
1 CATATCCCCAACATGGTCTTATA
22747475 CGGAATCTTA
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 53 0.98
43 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (42 bp):
CATATCCCCAACATGGTCTTATATGAAATATCATACCGAGGC
Found at i:22750735 original size:19 final size:19
Alignment explanation
Indices: 22750699--22750735 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
22750689 TAAATAGGCT
* *
22750699 TTAATTAAGTGAATTTAGC
1 TTAATTAAGAGAAATTAGC
22750718 TTAATTAAGAGAAATTAG
1 TTAATTAAGAGAAATTAG
22750736 GAAAAAGGGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.03, G:0.16, T:0.38
Consensus pattern (19 bp):
TTAATTAAGAGAAATTAGC
Found at i:22751336 original size:12 final size:12
Alignment explanation
Indices: 22751319--22751346 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
22751309 TAAAAGATAT
22751319 TTATTATAATTA
1 TTATTATAATTA
22751331 TTATTATAATTA
1 TTATTATAATTA
22751343 TTAT
1 TTAT
22751347 CATTATTAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (12 bp):
TTATTATAATTA
Found at i:22752391 original size:13 final size:14
Alignment explanation
Indices: 22752370--22752409 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
22752360 ATTTGATTGG
22752370 AAAATGAATTAAA-
1 AAAATGAATTAAAT
*
22752383 AATATGAATTAAAT
1 AAAATGAATTAAAT
22752397 AAAAGTGAATTAA
1 AAAA-TGAATTAA
22752410 TTTATGAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 12 0.52
14 3 0.13
15 8 0.35
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.28
Consensus pattern (14 bp):
AAAATGAATTAAAT
Found at i:22752794 original size:23 final size:23
Alignment explanation
Indices: 22752762--22752935 Score: 145
Period size: 21 Copynumber: 8.0 Consensus size: 23
22752752 GGCTTTGCTG
* *
22752762 ATCAGGCACTTTATGTGTCGTAT
1 ATCAGGCACCTCATGTGTCGTAT
* * * *
22752785 ATCAGACACTTTATGTGTCATAT
1 ATCAGGCACCTCATGTGTCGTAT
* *
22752808 TTCAGGCACCTCGTGTGTC--AT
1 ATCAGGCACCTCATGTGTCGTAT
22752829 ATCAGGCACCTCATGTGTCG--T
1 ATCAGGCACCTCATGTGTCGTAT
*
22752850 ATCAGGCACCTCGTGTGTC--AT
1 ATCAGGCACCTCATGTGTCGTAT
*
22752871 ATCAGGCATCTCATGTGTCGT-T
1 ATCAGGCACCTCATGTGTCGTAT
*
22752893 -TCAGGCACCTCGTGTGTC--AT
1 ATCAGGCACCTCATGTGTCGTAT
* * *
22752913 TTCAGGCA-CTTATGTGTTGTAT
1 ATCAGGCACCTCATGTGTCGTAT
22752935 A
1 A
22752936 CTGATTAGTA
Statistics
Matches: 125, Mismatches: 18, Indels: 17
0.78 0.11 0.11
Matches are distributed among these distances:
20 8 0.06
21 79 0.63
22 3 0.02
23 35 0.28
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (23 bp):
ATCAGGCACCTCATGTGTCGTAT
Found at i:22752864 original size:42 final size:41
Alignment explanation
Indices: 22752809--22752934 Score: 198
Period size: 42 Copynumber: 3.0 Consensus size: 41
22752799 GTGTCATATT
22752809 TCAGGCACCTCGTGTGTCATATCAGGCACCTCATGTGTCGTA
1 TCAGGCACCTCGTGTGTCATATCAGGCA-CTCATGTGTCGTA
*
22752851 TCAGGCACCTCGTGTGTCATATCAGGCATCTCATGTGTCGTT
1 TCAGGCACCTCGTGTGTCATATCAGGCA-CTCATGTGTCGTA
* * *
22752893 TCAGGCACCTCGTGTGTCATTTCAGGCACTTATGTGTTGTA
1 TCAGGCACCTCGTGTGTCATATCAGGCACTCATGTGTCGTA
22752934 T
1 T
22752935 ACTGATTAGT
Statistics
Matches: 78, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
41 11 0.14
42 67 0.86
ACGTcount: A:0.17, C:0.25, G:0.24, T:0.33
Consensus pattern (41 bp):
TCAGGCACCTCGTGTGTCATATCAGGCACTCATGTGTCGTA
Found at i:22752899 original size:63 final size:64
Alignment explanation
Indices: 22752762--22752921 Score: 169
Period size: 63 Copynumber: 2.5 Consensus size: 64
22752752 GGCTTTGCTG
* * * * ** *
22752762 ATCAGGCACTTTATGTGTCGTATATCAGACACTTTATGTGTCATATTTCAGGCACCTCGTGTGTC
1 ATCAGGCACCTCATGTGTC--ATATCAGGCACCTCGTGTGTCATA-TTCAGGCACCTCATGTGTC
22752827 AT
63 AT
* * *
22752829 ATCAGGCACCTCATGTGTCGTATCAGGCACCTCGTGTGTCATA-TCAGGCATCTCATGTGTCGT
1 ATCAGGCACCTCATGTGTCATATCAGGCACCTCGTGTGTCATATTCAGGCACCTCATGTGTCAT
* * *
22752892 TTCAGGCACCTCGTGTGTCATTTCAGGCAC
1 ATCAGGCACCTCATGTGTCATATCAGGCAC
22752922 TTATGTGTTG
Statistics
Matches: 79, Mismatches: 14, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
63 43 0.54
65 19 0.24
67 17 0.22
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.33
Consensus pattern (64 bp):
ATCAGGCACCTCATGTGTCATATCAGGCACCTCGTGTGTCATATTCAGGCACCTCATGTGTCAT
Found at i:22753319 original size:26 final size:25
Alignment explanation
Indices: 22753262--22753320 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
22753252 AAGTATGAGA
**
22753262 AAGTGAAATTATGAATTGAAATGTG
1 AAGTGAAATTATGAATTGAAATAAG
*
22753287 AAATGAAATTGA-GATATTGAAATAAG
1 AAGTGAAATT-ATGA-ATTGAAATAAG
22753313 AAGTGAAA
1 AAGTGAAA
22753321 ATAGAATGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
25 11 0.39
26 17 0.61
ACGTcount: A:0.51, C:0.00, G:0.22, T:0.27
Consensus pattern (25 bp):
AAGTGAAATTATGAATTGAAATAAG
Found at i:22757521 original size:16 final size:16
Alignment explanation
Indices: 22757500--22757533 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
22757490 TCATCGGCCG
22757500 TAGCCCTAAATTTTTT
1 TAGCCCTAAATTTTTT
**
22757516 TAGCCCTATGTTTTTT
1 TAGCCCTAAATTTTTT
22757532 TA
1 TA
22757534 TTTTATCTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.18, G:0.09, T:0.53
Consensus pattern (16 bp):
TAGCCCTAAATTTTTT
Found at i:22763326 original size:25 final size:25
Alignment explanation
Indices: 22763298--22763346 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
22763288 CCAGAGGACC
* *
22763298 AATCATATAACTCATGATAATGATT
1 AATCACATAACTCATCATAATGATT
* *
22763323 AATCACATAATTCTTCATAATGAT
1 AATCACATAACTCATCATAATGAT
22763347 AATAATAAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.37
Consensus pattern (25 bp):
AATCACATAACTCATCATAATGATT
Found at i:22766950 original size:27 final size:26
Alignment explanation
Indices: 22766892--22767000 Score: 119
Period size: 27 Copynumber: 4.0 Consensus size: 26
22766882 AGGAAGCGTC
* *
22766892 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
*
22766920 CTGGTGGCTCTGTCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
22766947 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* * *
22766975 CTAGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
22767001 TTTGTAGCCA
Statistics
Matches: 71, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
26 3 0.04
27 38 0.54
28 30 0.42
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:22766986 original size:55 final size:54
Alignment explanation
Indices: 22766892--22767000 Score: 157
Period size: 55 Copynumber: 2.0 Consensus size: 54
22766882 AGGAAGCGTC
* *
22766892 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGTCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTGATCTAGTGACTCTGTCACAT-TATCTGTT
* *
22766947 CTGGTGGCTCTGCCAC-GATTATCTGTATCTAGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTG-ATCTAGTGACTCTGTCACATTATCTGTT
22767001 TTTGTAGCCA
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
54 16 0.33
55 33 0.67
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATCTGATCTAGTGACTCTGTCACATTATCTGTT
Found at i:22777763 original size:8 final size:8
Alignment explanation
Indices: 22777750--22777788 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
22777740 CTAGATCGGC
22777750 AAAAGCCG
1 AAAAGCCG
22777758 AAAAGCC-
1 AAAAGCCG
22777765 AAAATGCCG
1 AAAA-GCCG
*
22777774 AAATGCCG
1 AAAAGCCG
22777782 AAAAGCC
1 AAAAGCC
22777789 AGTATTTTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
7 4 0.15
8 20 0.74
9 3 0.11
ACGTcount: A:0.49, C:0.26, G:0.21, T:0.05
Consensus pattern (8 bp):
AAAAGCCG
Found at i:22778263 original size:27 final size:26
Alignment explanation
Indices: 22778205--22778315 Score: 105
Period size: 27 Copynumber: 4.1 Consensus size: 26
22778195 AGGAAGCGTC
* *
22778205 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
*
22778233 CTGGTGGCTCTGTCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
* *
22778260 CTGGTGGCTTTGCCACGATTATCTATAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* * *
22778288 CTAGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
22778314 CT
1 CT
22778316 AGCAGCCATG
Statistics
Matches: 69, Mismatches: 11, Indels: 8
0.78 0.12 0.09
Matches are distributed among these distances:
26 5 0.07
27 35 0.51
28 29 0.42
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.39
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:22778299 original size:55 final size:54
Alignment explanation
Indices: 22778205--22778315 Score: 152
Period size: 55 Copynumber: 2.0 Consensus size: 54
22778195 AGGAAGCGTC
* *
22778205 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGTCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTGATCTAGTGACTCTGTCACAT-TATCTGTT
* * *
22778260 CTGGTGGCTTTGCCAC-GATTATCTATATCTAGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAAATTATCT-GATCTAGTGACTCTGTCACATTATCTGTT
22778314 CT
1 CT
22778316 AGCAGCCATG
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
54 17 0.34
55 33 0.66
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.39
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATCTGATCTAGTGACTCTGTCACATTATCTGTT
Found at i:22780575 original size:40 final size:40
Alignment explanation
Indices: 22780483--22780577 Score: 113
Period size: 40 Copynumber: 2.4 Consensus size: 40
22780473 TATCTCAGTA
* * *
22780483 TCGCACACTTAGCGCCTCTTATAGCCGAAGCTATTCCATC
1 TCGCACACTTAGTGCATCTTATAGCCGAAGCTATTCCAAC
* *
22780523 TCGCACACTTAGTGTCAT-TTATAGCTGAAGCTATTTCGAAC
1 TCGCACACTTAGTG-CATCTTATAGCCGAAGCTA-TTCCAAC
22780564 -CGCACACTTAGTGC
1 TCGCACACTTAGTGC
22780578 CGAACATAGT
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
39 1 0.02
40 40 0.83
41 7 0.15
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.29
Consensus pattern (40 bp):
TCGCACACTTAGTGCATCTTATAGCCGAAGCTATTCCAAC
Found at i:22787361 original size:25 final size:25
Alignment explanation
Indices: 22787333--22787380 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
22787323 TAGAGGACCA
* *
22787333 ATCATATAACTCATGATAATGATTT
1 ATCACATAACTCATCATAATGATTT
* *
22787358 ATCACATAATTCTTCATAATGAT
1 ATCACATAACTCATCATAATGAT
22787381 AATAATAAAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.40, C:0.15, G:0.06, T:0.40
Consensus pattern (25 bp):
ATCACATAACTCATCATAATGATTT
Found at i:22802362 original size:18 final size:18
Alignment explanation
Indices: 22802339--22802373 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
22802329 CCATACGGGT
22802339 TAAT-AAATAAAATAATAA
1 TAATAAAATAAAA-AATAA
22802357 TAATAAAATAAAAAATA
1 TAATAAAATAAAAAATA
22802374 GGCAGTAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (18 bp):
TAATAAAATAAAAAATAA
Found at i:22802363 original size:14 final size:15
Alignment explanation
Indices: 22802339--22802367 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
22802329 CCATACGGGT
22802339 TAATAAATAAAATAA
1 TAATAAATAAAATAA
22802354 TAAT-AATAAAATAA
1 TAATAAATAAAATAA
22802368 AAAATAGGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
TAATAAATAAAATAA
Found at i:22802788 original size:65 final size:65
Alignment explanation
Indices: 22802679--22802809 Score: 253
Period size: 65 Copynumber: 2.0 Consensus size: 65
22802669 CCCCTAGGGT
*
22802679 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTATTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
22802744 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
22802809 T
1 T
22802810 GCATGGGACT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.43
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
Found at i:22806898 original size:65 final size:65
Alignment explanation
Indices: 22806789--22806919 Score: 253
Period size: 65 Copynumber: 2.0 Consensus size: 65
22806779 CCCCTAGGGT
*
22806789 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTATTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
22806854 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
22806919 T
1 T
22806920 GCATGGGACT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.43
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
Found at i:22811294 original size:42 final size:42
Alignment explanation
Indices: 22811235--22811353 Score: 139
Period size: 43 Copynumber: 2.8 Consensus size: 42
22811225 TGGGGTTAGT
*
22811235 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCAATA
** * *
22811277 TGAGATTTTGTGTAAGACCATAGCTGGGCTATTGGCATCAATA
1 TGAGATTACGTGTAAGACCATATCTGGGATA-TGGCATCAATA
* ** * *
22811320 TGCGATCCCATGTAAGATCATATCTGGGATATGG
1 TGAGATTACGTGTAAGACCATATCTGGGATATGG
22811354 AATTGGTATA
Statistics
Matches: 63, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
42 30 0.48
43 33 0.52
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCAATA
Found at i:22818706 original size:43 final size:43
Alignment explanation
Indices: 22818603--22818709 Score: 153
Period size: 43 Copynumber: 2.5 Consensus size: 43
22818593 TAGCCAAGCT
* *
22818603 ATGGTCTTACACGA-AATCAAATAACGATGCTAATGTCCCAGAC
1 ATGGTCTTACAC-ATAATCACATAACGATGCCAATGTCCCAGAC
* * *
22818646 ATGGTATTACACGTAATCACATAATGATGCCAATGTCCCAGAC
1 ATGGTCTTACACATAATCACATAACGATGCCAATGTCCCAGAC
22818689 ATGGTCTTACACATAATCACA
1 ATGGTCTTACACATAATCACA
22818710 CCTCGTTAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.25
Consensus pattern (43 bp):
ATGGTCTTACACATAATCACATAACGATGCCAATGTCCCAGAC
Found at i:22827387 original size:29 final size:30
Alignment explanation
Indices: 22827345--22827407 Score: 92
Period size: 29 Copynumber: 2.1 Consensus size: 30
22827335 ATGTCTAAAA
*
22827345 CAATAAAATTGATTGGGAATATAAAATCAT
1 CAATAAAATCGATTGGGAATATAAAATCAT
**
22827375 CAAT-AAATCGATTGGGAATATAATTTCAT
1 CAATAAAATCGATTGGGAATATAAAATCAT
22827404 CAAT
1 CAAT
22827408 TTTCACAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 26 0.87
30 4 0.13
ACGTcount: A:0.46, C:0.10, G:0.13, T:0.32
Consensus pattern (30 bp):
CAATAAAATCGATTGGGAATATAAAATCAT
Found at i:22835909 original size:43 final size:43
Alignment explanation
Indices: 22835803--22835910 Score: 137
Period size: 43 Copynumber: 2.5 Consensus size: 43
22835793 TAGCCCAGCT
*
22835803 ATGGTCTTACACGA-AATCAAATAACGATGCCAATGTCCCAGAC
1 ATGGTCTTACAC-ATAATCACATAACGATGCCAATGTCCCAGAC
* ** * * *
22835846 ATGGTATTACATGTAGTCACATAATGATGCCAATGTCCTAGAC
1 ATGGTCTTACACATAATCACATAACGATGCCAATGTCCCAGAC
22835889 ATGGTCTTACACATAATCACAT
1 ATGGTCTTACACATAATCACAT
22835911 CTCGTTAATC
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (43 bp):
ATGGTCTTACACATAATCACATAACGATGCCAATGTCCCAGAC
Found at i:22841071 original size:25 final size:25
Alignment explanation
Indices: 22841028--22841075 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
22841018 TTATAAAGTG
* * *
22841028 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
22841053 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
22841076 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:22841141 original size:20 final size:20
Alignment explanation
Indices: 22841112--22841158 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
22841102 ATTTTGATAA
*
22841112 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
22841132 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
22841152 ACATGAT
1 ACATGAT
22841159 GTATTCATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:22841239 original size:23 final size:23
Alignment explanation
Indices: 22841209--22841281 Score: 119
Period size: 23 Copynumber: 3.1 Consensus size: 23
22841199 AGGAAGTGAA
22841209 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
22841232 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
22841255 AAAAGGGCTTTTGCCCCAATTATT
1 -AAAGGGCTTATGCCCCAGTTATT
22841279 AAA
1 AAA
22841282 AGAGGCTAGG
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
23 26 0.55
24 21 0.45
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:22841302 original size:25 final size:24
Alignment explanation
Indices: 22841208--22841302 Score: 131
Period size: 24 Copynumber: 4.0 Consensus size: 24
22841198 GAGGAAGTGA
22841208 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
22841232 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
22841255 AAAAGGGCTTTTGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
22841279 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
22841303 ATGATAAAGC
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
23 23 0.37
24 30 0.48
25 10 0.16
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:22849092 original size:79 final size:81
Alignment explanation
Indices: 22848956--22849138 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
22848946 TCGAATGATG
* *
22848956 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
22849020 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
22849035 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
22849097 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
22849115 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
22849139 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:22849154 original size:40 final size:40
Alignment explanation
Indices: 22848957--22849140 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
22848947 CGAATGATGT
* * * *
22848957 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
22848997 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
22849037 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
22849075 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
22849116 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
22849141 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:22849162 original size:79 final size:79
Alignment explanation
Indices: 22849009--22849173 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
22848999 GGACTAAGAT
* **
22849009 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
22849074 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
22849088 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
22849151 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
22849167 CCGAAGG
1 CCGAAGG
22849174 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:22858153 original size:44 final size:44
Alignment explanation
Indices: 22858070--22858153 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
22858060 GAGGTATTAT
* ** * *
22858070 ATTGGGATTACCCGTCTAGGCTAAATCCTTTTTGTAACAAGGTC
1 ATTGAGATTACCCGTCTAGGCTAAATCCCATCTGCAACAAGGTC
22858114 ATTGAGATTACCCGTCT-GAGCTAAATCCCATCTGCAACAA
1 ATTGAGATTACCCGTCTAG-GCTAAATCCCATCTGCAACAA
22858154 ATACAGGACC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 1 0.03
44 33 0.97
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (44 bp):
ATTGAGATTACCCGTCTAGGCTAAATCCCATCTGCAACAAGGTC
Found at i:22858686 original size:20 final size:20
Alignment explanation
Indices: 22858645--22858690 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
22858635 AGCACATATA
* *
22858645 TTCATAAAATTTTAGCATTT
1 TTCATTAAATTTTAGCACTT
22858665 TTCATTAAATTTTA-CAACTT
1 TTCATTAAATTTTAGC-ACTT
22858685 TTCATT
1 TTCATT
22858691 TTAGTCCTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 1 0.04
20 22 0.96
ACGTcount: A:0.33, C:0.13, G:0.02, T:0.52
Consensus pattern (20 bp):
TTCATTAAATTTTAGCACTT
Found at i:22866255 original size:17 final size:17
Alignment explanation
Indices: 22866233--22866267 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
22866223 TAATTAAAAG
22866233 GTTATTATAGTAAATTA
1 GTTATTATAGTAAATTA
22866250 GTTATTATAGTAAATTA
1 GTTATTATAGTAAATTA
22866267 G
1 G
22866268 ATAAACAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.14, T:0.46
Consensus pattern (17 bp):
GTTATTATAGTAAATTA
Found at i:22870419 original size:27 final size:27
Alignment explanation
Indices: 22870341--22870465 Score: 204
Period size: 27 Copynumber: 4.8 Consensus size: 27
22870331 CCTCTTTAAT
**
22870341 AACTGGGGCA-AAGCCC-TTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTTCAATA
22870366 AACTGGGGC-TAAGCCC-TTTTCAATA
1 AACTGGGGCATAAGCCCTTTTTCAATA
22870391 AACTGGGGCATAAGCCCTTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTTCAATA
22870418 AACTGGGGCATAAGCCCTTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTTCAATA
22870445 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
22870466 GCACTTCCTC
Statistics
Matches: 95, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
25 31 0.33
26 7 0.07
27 57 0.60
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (27 bp):
AACTGGGGCATAAGCCCTTTTTCAATA
Found at i:22870531 original size:11 final size:11
Alignment explanation
Indices: 22870515--22870572 Score: 70
Period size: 11 Copynumber: 5.6 Consensus size: 11
22870505 TTATGAATAC
22870515 ATCATATGCAT
1 ATCATATGCAT
22870526 ATCATA--CAT
1 ATCATATGCAT
*
22870535 ATCATGTGCAT
1 ATCATATGCAT
22870546 ATCATA--CAT
1 ATCATATGCAT
*
22870555 ATCATGTGCAT
1 ATCATATGCAT
22870566 ATCATAT
1 ATCATAT
22870573 CAATCATGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.41
11 23 0.59
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (11 bp):
ATCATATGCAT
Found at i:22870544 original size:20 final size:20
Alignment explanation
Indices: 22870515--22870581 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
22870505 TTATGAATAC
*
22870515 ATCATATGCATATCATACAT
1 ATCATGTGCATATCATACAT
22870535 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
22870555 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
22870575 ATCATGT
1 ATCATGT
22870582 ATATCAAAAT
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:22870587 original size:9 final size:10
Alignment explanation
Indices: 22870523--22870587 Score: 57
Period size: 9 Copynumber: 6.7 Consensus size: 10
22870513 ACATCATATG
*
22870523 CATATCAT-A
1 CATATCATGT
22870532 CATATCATGT
1 CATATCATGT
*
22870542 GCATATCAT-A
1 -CATATCATGT
22870552 CATATCATGT
1 CATATCATGT
*
22870562 GCATATCATAT
1 -CATATCATGT
22870573 CA-ATCATGT
1 CATATCATGT
22870582 -ATATCA
1 CATATCA
22870588 AAATCCCATG
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
8 1 0.02
9 26 0.57
10 2 0.04
11 17 0.37
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.35
Consensus pattern (10 bp):
CATATCATGT
Found at i:22879821 original size:16 final size:17
Alignment explanation
Indices: 22879795--22879827 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
22879785 ACTTATACTT
22879795 GTGATAAATGAAATGTG
1 GTGATAAATGAAATGTG
*
22879812 GTGA-AAATGAATTGTG
1 GTGATAAATGAAATGTG
22879828 ATATGTATGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.39, C:0.00, G:0.30, T:0.30
Consensus pattern (17 bp):
GTGATAAATGAAATGTG
Found at i:22900682 original size:28 final size:28
Alignment explanation
Indices: 22900650--22900708 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
22900640 CCATAATCTT
22900650 ACTAATTTCTCAATTAAACAATACCAAA
1 ACTAATTTCTCAATTAAACAATACCAAA
*
22900678 ACTAATTTCTCAATTAAATAATACCAAA
1 ACTAATTTCTCAATTAAACAATACCAAA
22900706 ACT
1 ACT
22900709 TAGCAAATTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.49, C:0.20, G:0.00, T:0.31
Consensus pattern (28 bp):
ACTAATTTCTCAATTAAACAATACCAAA
Found at i:22908866 original size:41 final size:41
Alignment explanation
Indices: 22908819--22908899 Score: 153
Period size: 41 Copynumber: 2.0 Consensus size: 41
22908809 TGAATGATGC
22908819 ATGTGAAATGATTATAAAATGTTCTGATATGTCTGGTAATG
1 ATGTGAAATGATTATAAAATGTTCTGATATGTCTGGTAATG
*
22908860 ATGTGAAATGATTATAAAATGTTCTGATATGTCTGTTAAT
1 ATGTGAAATGATTATAAAATGTTCTGATATGTCTGGTAAT
22908900 TCCATATAAC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.35, C:0.05, G:0.20, T:0.41
Consensus pattern (41 bp):
ATGTGAAATGATTATAAAATGTTCTGATATGTCTGGTAATG
Found at i:22912469 original size:40 final size:40
Alignment explanation
Indices: 22912421--22912629 Score: 228
Period size: 40 Copynumber: 5.3 Consensus size: 40
22912411 TCTTCGAAAT
* * *
22912421 TTAG-CCGGATATAACCACAAGCACAATTACCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * * *
22912460 TTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * *
22912500 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * *
22912540 TTAGCCCGGATAAAATCACTAG--CAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
* * * *
22912578 TTAGCCC-GATAAAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
*
22912617 TTAGCCTGGATAT
1 TTAGCCCGGATAT
22912630 CATTCAAATG
Statistics
Matches: 148, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
37 14 0.09
38 22 0.15
39 24 0.16
40 88 0.59
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAACCACTAGCACAAATGCCTTCGGGTC
Found at i:22912628 original size:77 final size:78
Alignment explanation
Indices: 22912484--22912628 Score: 213
Period size: 77 Copynumber: 1.9 Consensus size: 78
22912474 GCAACTCGCA
* * * *
22912484 CAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATAAATCAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
22912549 ATAAAATCACTAG
66 ATAAAATCACTAG
* *
22912562 CAAATGCCTTCGGGACTTAGCCC-GATAAAATC-ACTAGCATAAATGCCTTCGGGACTTAGCCTG
1 CAAATGCCTTCGGGACTTAGCCCGGAT-AAATCAACTAGCACAAATGCCTTCGGGACTTAGCCCG
22912625 GATA
65 GATA
22912629 TCATTCAAAT
Statistics
Matches: 60, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
77 34 0.57
78 26 0.43
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGATAAATCAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
ATAAAATCACTAG
Found at i:22921759 original size:40 final size:40
Alignment explanation
Indices: 22921704--22921849 Score: 215
Period size: 40 Copynumber: 3.7 Consensus size: 40
22921694 CATTTGAATA
*
22921704 TATCCGGGCTAAGTCCCGAAGGTATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
22921744 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
* * * *
22921784 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTT
*
22921824 TATCCGGGCTAAG-ACCGAAGGCATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTT
22921850 GTGCGAGTTG
Statistics
Matches: 99, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
39 12 0.12
40 84 0.85
41 3 0.03
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
Found at i:22921876 original size:79 final size:80
Alignment explanation
Indices: 22921702--22921922 Score: 234
Period size: 79 Copynumber: 2.8 Consensus size: 80
22921692 AGCATTTGAA
* * * * * *
22921702 TATATCCGGGCTAAGTCCCGAAGGTATTTATGCTAGTGATTTTATCCGGGCTAAGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGTACCGAAGGC
* *
22921767 ATTTATGCTAGTGAT
66 ATTTATGCGAGTGAC
*
22921782 TTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAG-ACCGAAGG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATTATATCCGGGCTAAGTACCGAAGG
*
22921845 CATTTGTGCGAGTTG-C
65 CATTTATGCGAG-TGAC
* * * ** * * *
22921861 TATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAAATTCCGAAG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGTACCGAAG
22921923 AAACTTGGTT
Statistics
Matches: 118, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
78 8 0.07
79 60 0.51
80 47 0.40
81 3 0.03
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (80 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGTACCGAAGGC
ATTTATGCGAGTGAC
Found at i:22921893 original size:40 final size:40
Alignment explanation
Indices: 22921701--22921893 Score: 203
Period size: 40 Copynumber: 4.8 Consensus size: 40
22921691 GAGCATTTGA
* * * * *
22921701 ATATATCCGGGCTAAGTCCCGAAGGTATTTATGCTAG-TG
1 ATATACCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* * * * *
22921740 ATTTTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TG
1 A-TATACCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
22921780 ATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 A-TATACCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
22921821 ATATATCCGGGCTAAGA-CCGAAGGCATTTGTGCGAGTTG
1 ATATACCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* * *
22921860 CTATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATACCCGGGCTAAGACCCGAAGGCATTTGTGC
22921894 TTGTGGTTAT
Statistics
Matches: 141, Mismatches: 10, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
39 37 0.26
40 101 0.72
41 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATACCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
Found at i:22937698 original size:20 final size:21
Alignment explanation
Indices: 22937660--22937698 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
22937650 TTTAAAACAC
22937660 ATTTATTCATAAAAATTCAAT
1 ATTTATTCATAAAAATTCAAT
* *
22937681 ATTT-TTCATCAAATTTCA
1 ATTTATTCATAAAAATTCA
22937699 TAACTTTACA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.41, C:0.13, G:0.00, T:0.46
Consensus pattern (21 bp):
ATTTATTCATAAAAATTCAAT
Found at i:22940739 original size:33 final size:34
Alignment explanation
Indices: 22940702--22940766 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
22940692 GTCTCAGTTA
* *
22940702 GGGCCTTAGCCC-ATTCAGTAACAGTATCAGTGG
1 GGGCCTTAGCCCAATTCAATAACAATATCAGTGG
22940735 GGGCCTTAGCCCAATTCAATAACAATATCAGT
1 GGGCCTTAGCCCAATTCAATAACAATATCAGT
22940767 ACAAAATGCA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 12 0.41
34 17 0.59
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.25
Consensus pattern (34 bp):
GGGCCTTAGCCCAATTCAATAACAATATCAGTGG
Found at i:22946466 original size:17 final size:16
Alignment explanation
Indices: 22946439--22946470 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
22946429 CGTCCGTATG
22946439 GGGCCCATGACCCATA
1 GGGCCCATGACCCATA
22946455 GGGCCGCATGACCCAT
1 GGGCC-CATGACCCAT
22946471 TTCAGCCCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.22, C:0.38, G:0.28, T:0.12
Consensus pattern (16 bp):
GGGCCCATGACCCATA
Found at i:22967505 original size:20 final size:20
Alignment explanation
Indices: 22967480--22967519 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
22967470 CCTATTCGAG
22967480 TTAAACCAATTCAGATTACT
1 TTAAACCAATTCAGATTACT
* *
22967500 TTAAACCATTTTAGATTACT
1 TTAAACCAATTCAGATTACT
22967520 CCAAATTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.05, T:0.40
Consensus pattern (20 bp):
TTAAACCAATTCAGATTACT
Found at i:22969689 original size:42 final size:43
Alignment explanation
Indices: 22969601--22969728 Score: 134
Period size: 42 Copynumber: 2.9 Consensus size: 43
22969591 CGGCATCTGT
** * * * *
22969601 ATGAG-TTATCATGTAAGACCATATCTGGGATATGGTGTTGAT
1 ATGAGATTATCATGTAAGACCACGTCTGGGACATGGCGTCGAA
22969643 ATGAGATT-TCATGTAAGACCACGTCTGGGACATGGCGTCGAA
1 ATGAGATTATCATGTAAGACCACGTCTGGGACATGGCGTCGAA
*
22969685 ATGAGAATTCGATCCCATGTAAGACCACGTCTTGGACATGGCGT
1 ATGAG-ATT--AT--CATGTAAGACCACGTCTGGGACATGGCGT
22969729 TGGCATCTTA
Statistics
Matches: 72, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
42 38 0.53
43 5 0.07
46 1 0.01
48 28 0.39
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (43 bp):
ATGAGATTATCATGTAAGACCACGTCTGGGACATGGCGTCGAA
Found at i:22974120 original size:40 final size:40
Alignment explanation
Indices: 22974036--22974220 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
22974026 TCGAATGATG
* *
22974036 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
22974075 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
22974116 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
22974155 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
22974194 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
22974221 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 36 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:22974172 original size:79 final size:81
Alignment explanation
Indices: 22974036--22974218 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
22974026 TCGAATGATG
* *
22974036 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
22974100 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
22974115 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
22974177 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
22974195 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
22974219 TGAACGAGTA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:22974242 original size:79 final size:78
Alignment explanation
Indices: 22974037--22974253 Score: 237
Period size: 79 Copynumber: 2.7 Consensus size: 78
22974027 CGAATGATGT
* *
22974037 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
22974100 TGTGCGAGTTACTAATT
62 TGTGCGAGTTACTAATA
* *
22974117 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
22974180 GTGCGAGTTACT-ATAA
63 GTGCGAGTTACTAAT-A
* ** *
22974196 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
22974254 TACGTGATTC
Statistics
Matches: 117, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
78 3 0.03
79 68 0.58
80 46 0.39
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:22982141 original size:40 final size:40
Alignment explanation
Indices: 22982057--22982241 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
22982047 TCGAATGATG
* *
22982057 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
22982096 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
22982137 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
22982176 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
22982215 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
22982242 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
39 36 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:22982193 original size:79 final size:81
Alignment explanation
Indices: 22982057--22982239 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
22982047 TCGAATGATG
* *
22982057 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
22982121 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * **
22982136 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
22982198 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
22982216 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
22982240 TGAACGAGTA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:22982263 original size:79 final size:78
Alignment explanation
Indices: 22982058--22982274 Score: 237
Period size: 79 Copynumber: 2.7 Consensus size: 78
22982048 CGAATGATGT
* *
22982058 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
22982121 TGTGCGAGTTACTAATT
62 TGTGCGAGTTACTAATA
* *
22982138 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
22982201 GTGCGAGTTACT-ATAA
63 GTGCGAGTTACTAAT-A
* ** *
22982217 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
22982275 TACGTGATTC
Statistics
Matches: 117, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
78 3 0.03
79 68 0.58
80 46 0.39
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:22988734 original size:40 final size:40
Alignment explanation
Indices: 22988657--22988874 Score: 273
Period size: 40 Copynumber: 5.5 Consensus size: 40
22988647 AAACCAAGTA
* * * *
22988657 CCTTCGAGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCACACAAATG
*
22988696 CCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
* *
22988736 CCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
* *
22988776 CCTTCGGGACTTAGCCCGGATATAGTAATTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
* * *
22988816 CCTTCGGGACTTAGCCCGGA-ATTACTCACT-AGCACAAATT
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCA-CACAAATG
22988856 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
22988875 TTATCATCCG
Statistics
Matches: 160, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 14 0.09
40 146 0.91
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
Found at i:22988789 original size:80 final size:79
Alignment explanation
Indices: 22988671--22988878 Score: 301
Period size: 80 Copynumber: 2.6 Consensus size: 79
22988661 CGAGATTTAG
*
22988671 CCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATG
1 CCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATG
22988736 CCTTCGGGACCTAGC
65 CCTTCGGGACCTAGC
* * *
22988751 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAATTCGCACAAATG
1 CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATG
*
22988816 CCTTCGGGACTTAGC
65 CCTTCGGGACCTAGC
* * *
22988831 CCGGA-ATTACTCACTAGCACAAATTCCTTCGGGACTTAGCCCGGTTAT
1 CCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
22988879 CATCCGAATA
Statistics
Matches: 116, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
79 2 0.02
80 114 0.98
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATGC
CTTCGGGACCTAGC
Found at i:22996257 original size:42 final size:42
Alignment explanation
Indices: 22996141--22996258 Score: 114
Period size: 42 Copynumber: 2.8 Consensus size: 42
22996131 ATCTGAAATA
* * *
22996141 TCGTGTAAGACCGTGTTTGGGACACAGGC-TACGATTTGAGATT
1 TCGTGTAAGACCGTGTCTGGGACAAAGGCAT-CGATCT-AGATT
* * * **
22996184 TACGTGTATGACCATGTCTGAGACATTGGCATCGTATCT-GATT
1 T-CGTGTAAGACCGTGTCTGGGACAAAGGCATCG-ATCTAGATT
22996227 TCGTGTAAGACCGTGTCTGGGACAAAGGCATC
1 TCGTGTAAGACCGTGTCTGGGACAAAGGCATC
22996259 AATAGTGAAT
Statistics
Matches: 60, Mismatches: 12, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
42 26 0.43
43 6 0.10
44 24 0.40
45 4 0.07
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (42 bp):
TCGTGTAAGACCGTGTCTGGGACAAAGGCATCGATCTAGATT
Found at i:23005530 original size:46 final size:46
Alignment explanation
Indices: 23005463--23005637 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
23005453 TGTAACCCGC
* *
23005463 CCATAAGCGAACTTGGACTCAACTCAACGAGCTCGGGCATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
* * * *
23005509 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCAT
* * *
23005559 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
*
23005602 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
23005638 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 2 0.02
46 60 0.56
47 27 0.25
48 3 0.03
49 2 0.02
50 6 0.06
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
Found at i:23005577 original size:93 final size:93
Alignment explanation
Indices: 23005470--23005641 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
23005460 CGCCCATAAG
* * *
23005470 CGAACTTGGACTCAACTCAACGAGCTCGGGCATTTGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
23005535 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
23005563 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
23005628 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
23005642 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:23005657 original size:46 final size:44
Alignment explanation
Indices: 23005471--23005657 Score: 132
Period size: 46 Copynumber: 4.0 Consensus size: 44
23005461 GCCCATAAGC
* * * *
23005471 GAACTTGGACTCAACTCAACGAGCTCGGGCATTTG-CATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTC-GG-A--TGCCAACCATCTAGT
* *
23005517 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AGT
* * *
23005564 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTAGT
23005610 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTAGT
23005656 GA
1 GA
23005658 CATGTCACTT
Statistics
Matches: 112, Mismatches: 15, Indels: 28
0.72 0.10 0.18
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 11 0.10
45 3 0.03
46 59 0.53
47 30 0.27
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAGT
Found at i:23006098 original size:31 final size:30
Alignment explanation
Indices: 23006063--23006120 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
23006053 TTAACTCAAA
23006063 TTTTGGCAAAATTACAATTTTGCCCCTAAAC
1 TTTT-GCAAAATTACAATTTTGCCCCTAAAC
* * * *
23006094 TTTTGCATATTTACATTTTTTCCCCTA
1 TTTTGCAAAATTACAATTTTGCCCCTA
23006121 GGCTCGGGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
30 19 0.83
31 4 0.17
ACGTcount: A:0.26, C:0.22, G:0.07, T:0.45
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCTAAAC
Found at i:23014360 original size:27 final size:28
Alignment explanation
Indices: 23014289--23014393 Score: 108
Period size: 27 Copynumber: 3.9 Consensus size: 28
23014279 CTGCTAGAAT
* * * * *
23014289 AGATA-TTGTGACAGAGTCACCAGATAT
1 AGATATTTGTGGCATAGCCACCAGAAAC
* *
23014316 AGATA-TTATGGCAGAGCCACCAG-AAC
1 AGATATTTGTGGCATAGCCACCAGAAAC
**
23014342 AGATATTTGTGGTGTAGCCACCAGAAAC
1 AGATATTTGTGGCATAGCCACCAGAAAC
23014370 AGATATTTGTGGCATAGCCACCAG
1 AGATATTTGTGGCATAGCCACCAG
23014394 TACGCTTCCT
Statistics
Matches: 65, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
26 6 0.09
27 34 0.52
28 25 0.38
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (28 bp):
AGATATTTGTGGCATAGCCACCAGAAAC
Found at i:23022355 original size:27 final size:26
Alignment explanation
Indices: 23022286--23022400 Score: 115
Period size: 27 Copynumber: 4.3 Consensus size: 26
23022276 AGAATGGCTG
** *
23022286 CCAGAACAGATATTGTGATAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
23022312 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
23022339 CCAGAACAGATATTTGTGGC-GTAGCCA
1 CCAGAACAGATA-TTGTGGCAG-AGCCA
* * * *
23022366 TCAAAAATAGATATTTGTGGCATAGCCA
1 -CCAGAACAGATA-TTGTGGCAGAGCCA
23022394 CCAGAAC
1 CCAGAAC
23022401 TCTTCCTCCA
Statistics
Matches: 74, Mismatches: 10, Indels: 9
0.80 0.11 0.10
Matches are distributed among these distances:
26 13 0.18
27 39 0.53
28 22 0.30
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:23048276 original size:30 final size:30
Alignment explanation
Indices: 23048242--23048302 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
23048232 TCCTTAACTC
23048242 AAACT-TTGGAAAAATTACAATTTTGCCCCT
1 AAACTCTT-GAAAAATTACAATTTTGCCCCT
* * * *
23048272 AAACTCTTGCATATTTACACTTTTGCCCCT
1 AAACTCTTGAAAAATTACAATTTTGCCCCT
23048302 A
1 A
23048303 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
30 24 0.92
31 2 0.08
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (30 bp):
AAACTCTTGAAAAATTACAATTTTGCCCCT
Found at i:23056454 original size:18 final size:18
Alignment explanation
Indices: 23056431--23056466 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
23056421 AACTGCATGA
23056431 TTATAGACATCTGACCAT
1 TTATAGACATCTGACCAT
*
23056449 TTATAGACGTCTGACCAT
1 TTATAGACATCTGACCAT
23056467 ACATATTGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (18 bp):
TTATAGACATCTGACCAT
Found at i:23056609 original size:26 final size:27
Alignment explanation
Indices: 23056580--23056635 Score: 96
Period size: 26 Copynumber: 2.1 Consensus size: 27
23056570 AAAAGAAAAT
23056580 AAATCAAAAAGAAAA-TTAACGACTAG
1 AAATCAAAAAGAAAATTTAACGACTAG
*
23056606 AAATCAAAAAGAAAATTTAACGAGTAG
1 AAATCAAAAAGAAAATTTAACGACTAG
23056633 AAA
1 AAA
23056636 AAGTAAGTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 15 0.54
27 13 0.46
ACGTcount: A:0.62, C:0.09, G:0.12, T:0.16
Consensus pattern (27 bp):
AAATCAAAAAGAAAATTTAACGACTAG
Found at i:23058842 original size:19 final size:19
Alignment explanation
Indices: 23058818--23058859 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
23058808 TTGCATTCAT
*
23058818 TCAACCATGATTTTCAAAA
1 TCAACCATAATTTTCAAAA
23058837 TCAACCATAATTTTCAAAA
1 TCAACCATAATTTTCAAAA
23058856 TCAA
1 TCAA
23058860 TCAGCCACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.45, C:0.21, G:0.02, T:0.31
Consensus pattern (19 bp):
TCAACCATAATTTTCAAAA
Found at i:23059683 original size:46 final size:45
Alignment explanation
Indices: 23059579--23059793 Score: 168
Period size: 46 Copynumber: 4.6 Consensus size: 45
23059569 ATATCCGTGT
* * * *
23059579 CGATGCCATGTCCCAAACATGGTCTTACATTGAC-ACATTTCGTA-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTACATCTCG-AGGC
23059625 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-TACATCTCGAGGC
* * * * * * *
23059671 CGAAGCATGTCCCAGATATGTCTTACACTAGCAATCGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTA-CATCTCGAGGC
* * * *
23059717 CGATGCCATGTCCCAAACATGGTCTTACACTGGAT-C-TCCTAATGTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTACAT-CT--CGAGGC
*
23059765 CGATGCATGTCTCAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
23059794 AGCTCACACA
Statistics
Matches: 137, Mismatches: 23, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
44 11 0.08
45 16 0.12
46 68 0.50
47 24 0.18
48 18 0.13
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTACATCTCGAGGC
Found at i:23062518 original size:27 final size:27
Alignment explanation
Indices: 23062487--23062664 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
23062477 TAAATTGTAC
23062487 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
23062514 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23062540 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
23062568 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
23062596 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23062623 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
23062650 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
23062665 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Done.