Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 76 of 362
Found at i:23859829 original size:102 final size:98
Alignment explanation
Indices: 23859671--23859903 Score: 297
Period size: 100 Copynumber: 2.3 Consensus size: 98
23859661 CTGGTACGTA
* * **
23859671 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
23859736 GTACTACACA-CCTGACCTAACCATCTGATACACG
66 GTACTACACATCC-GACC-AACCATCTGATACACG
* * * *
23859770 TAGTAGCGTGTCACTTAGTACTACACATGTGATCGAAGTTATTAGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTG-CACTTAGTACTACACATGTGA-CCAA-TTATCAGGTACACATAGTAGCCTGCAC
* ** *
23859835 TTAGTACTACACATGCGACCAATTATCTGGTACACG
63 TTAGTACTACACATCCGACCAACCATCTGATACACG
*
23859871 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
23859904 TCACAATAGC
Statistics
Matches: 115, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
99 10 0.09
100 40 0.35
101 25 0.22
102 39 0.34
103 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACATCCGACCAACCATCTGATACACG
Found at i:23860580 original size:30 final size:30
Alignment explanation
Indices: 23860546--23860604 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
23860536 CTTTAATACG
23860546 AACTTTGGAAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGAAAAATTACAC-TTTTGCCCCTA
* * *
23860576 AACTTTTGCATAATTACACTTTTGCCCCT
1 AACTTTGGAAAAATTACACTTTTGCCCCT
23860605 GGGCTCGGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:23870917 original size:39 final size:39
Alignment explanation
Indices: 23870874--23871090 Score: 380
Period size: 39 Copynumber: 5.6 Consensus size: 39
23870864 GAATTTAATC
* *
23870874 CCGGATATAATTCCAGCTCATAGCCTGCAGACCTGAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
*
23870913 CCGGATAAAATTCCAGCACATAGCCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
*
23870952 CCGGATATAATTCCAGCACATAACCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
*
23870991 CCCGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
*
23871030 CTGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
23871069 CCGGATATAATTCCAGCACATA
1 CCGGATATAATTCCAGCACATA
23871091 CAATTATGAT
Statistics
Matches: 168, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 168 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCTGAAGT
Found at i:23883698 original size:39 final size:39
Alignment explanation
Indices: 23883669--23883774 Score: 185
Period size: 39 Copynumber: 2.7 Consensus size: 39
23883659 TTACAGCACG
* *
23883669 TAGCCTGCGGACCTGAAGTCCGGATATATTTCCCGCATA
1 TAGCCTGCGGACTTTAAGTCCGGATATATTTCCCGCATA
23883708 TAGCCTGCGGACTTTAAGTCCGGATATATTTCCCGCATA
1 TAGCCTGCGGACTTTAAGTCCGGATATATTTCCCGCATA
*
23883747 TAGCCTGCGGACTTTAAGTCTGGATATA
1 TAGCCTGCGGACTTTAAGTCCGGATATA
23883775 ATTTTCAAAT
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 64 1.00
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.29
Consensus pattern (39 bp):
TAGCCTGCGGACTTTAAGTCCGGATATATTTCCCGCATA
Found at i:23890996 original size:41 final size:38
Alignment explanation
Indices: 23890951--23891043 Score: 98
Period size: 40 Copynumber: 2.3 Consensus size: 38
23890941 AGCGGCATTT
23890951 TTAGCGGCGCTTGGATAAAAAACGCTGCTATA-GATCGAGCA
1 TTAGCGGCGCTTGGA-AAAAAAC-C-GCTATATG-TCGAGCA
* * *
23890992 TTAGCGGTGCCTTTTGAAAAACACCGCTATATGTCGAGCA
1 TTAGCGGCG-C-TTGGAAAAAAACCGCTATATGTCGAGCA
23891032 TTAGCGGCGCTT
1 TTAGCGGCGCTT
23891044 TCTGAAAAGC
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
38 2 0.04
39 1 0.02
40 21 0.47
41 10 0.22
42 7 0.16
43 4 0.09
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (38 bp):
TTAGCGGCGCTTGGAAAAAAACCGCTATATGTCGAGCA
Found at i:23891022 original size:40 final size:40
Alignment explanation
Indices: 23890968--23891051 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
23890958 CGCTTGGATA
* * *
23890968 AAAAACGCTGCTATA-GATCGAGCATTAGCGGTGCCTTT-TG
1 AAAAACACCGCTATATG-TCGAGCATTAGCGGCG-CTTTCTG
23891008 AAAAACACCGCTATATGTCGAGCATTAGCGGCGCTTTCTG
1 AAAAACACCGCTATATGTCGAGCATTAGCGGCGCTTTCTG
23891048 AAAA
1 AAAA
23891052 GCACAGCAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
39 4 0.10
40 34 0.87
41 1 0.03
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (40 bp):
AAAAACACCGCTATATGTCGAGCATTAGCGGCGCTTTCTG
Found at i:23891164 original size:101 final size:100
Alignment explanation
Indices: 23891002--23891276 Score: 361
Period size: 101 Copynumber: 2.7 Consensus size: 100
23890992 TTAGCGGTGC
* * * * * *
23891002 CTTTTGAAAAACACCGCTATATGTCGAGCATTAGCGGCGCTTTCTGAAAAGCACAGCAAAAAATT
1 CTTTTGAAAAACGCCGCTATAGGTCGACCATTAGCGGCGCTTTTTGAAAAACACCGCAAAAAATT
* **
23891067 AAGCACAATGTTGAGCTTTAATGGCATTAGTGGGG
66 AAGCACAATGTTGAGCTTTAATGGCATTAGCGACG
* * *
23891102 CTTTTCGACAAACGCCGCTATAGGTCGACCATTAGCGGCACTTTTTGAAAAACACCGTAAAAAAT
1 CTTTT-GAAAAACGCCGCTATAGGTCGACCATTAGCGGCGCTTTTTGAAAAACACCGCAAAAAAT
**
23891167 TAAGCACAATGTTGAGCTTTGGTGGCATTAGCGACG
65 TAAGCACAATGTTGAGCTTTAATGGCATTAGCGACG
* * * * *
23891203 CTTTTTGAAAAATGCCACTATAGGTCGACCATTAGCGACGCTTTTTGAAAAACGCCACAAAAAAT
1 C-TTTTGAAAAACGCCGCTATAGGTCGACCATTAGCGGCGCTTTTTGAAAAACACCGCAAAAAAT
23891268 TAAGCACAA
65 TAAGCACAA
23891277 CGCCATCGCT
Statistics
Matches: 151, Mismatches: 22, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
100 5 0.03
101 142 0.94
102 4 0.03
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.25
Consensus pattern (100 bp):
CTTTTGAAAAACGCCGCTATAGGTCGACCATTAGCGGCGCTTTTTGAAAAACACCGCAAAAAATT
AAGCACAATGTTGAGCTTTAATGGCATTAGCGACG
Found at i:23891501 original size:40 final size:40
Alignment explanation
Indices: 23891365--23891509 Score: 202
Period size: 40 Copynumber: 3.6 Consensus size: 40
23891355 GAGCTTTAGT
*
23891365 AGCATTAGCGGTGCTTTTTGAAAAACACCGCTATAGGTCG
1 AGCATTAGCGGTGCTTTTTGAAAAACACCGCTATAGATCG
* **
23891405 AGTATTAGCAATGCTTTTTGAAAAACACCGCTATAGATCG
1 AGCATTAGCGGTGCTTTTTGAAAAACACCGCTATAGATCG
*
23891445 AGCATTAGCGGTGCTTTTTGAAAAACGCCGCTATAGATCG
1 AGCATTAGCGGTGCTTTTTGAAAAACACCGCTATAGATCG
* * *
23891485 ACCATTTA-CGGCGCTTTTTGGAAAA
1 AGCA-TTAGCGGTGCTTTTTGAAAAA
23891510 TGCCGCAAAA
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
40 90 0.97
41 3 0.03
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (40 bp):
AGCATTAGCGGTGCTTTTTGAAAAACACCGCTATAGATCG
Found at i:23891661 original size:113 final size:114
Alignment explanation
Indices: 23891446--23891737 Score: 367
Period size: 113 Copynumber: 2.6 Consensus size: 114
23891436 TATAGATCGA
* * * *
23891446 GCATTAGCGGTGCTTTTTGAAAAACGCCGCTATAGATCGACCATTTACGGCGCTTTTTGGAAAAT
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGACCGACCATTTACGGCGCTTTCTGAAAAAT
23891511 GCCGCAAAAAATTAAGCACACTGCCGTCGCTTTATGTTGAGCTTTAGTG
66 GCCGCAAAAAATTAAGCACACTGCCGTCGCTTTATGTTGAGCTTTAGTG
* * *
23891560 GCATTAGCGGCGCTTTTTGAAAAACGTCGCTATAGGCCGACCA-TTA-GCGTGCTTTCTGAAAAA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGACCGACCATTTACG-GCGCTTTCTGAAAAA
*
23891623 TGCCGCAAAAAATTAAGCACAAC-GCCGTCGCTTTATGTTGAGTTTTAGTG
65 TGCCGCAAAAAATTAAGCAC-ACTGCCGTCGCTTTATGTTGAGCTTTAGTG
** * * * * * * * *
23891673 GCATTAGTAGTGCATTTTGAAAAATGCCACAATAGATCGAGCA-TTAGCGGCGCTTTTTGAAAAA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGACCGACCATTTA-CGGCGCTTTCTGAAAAA
23891737 T
65 T
23891738 ACTGCTATAG
Statistics
Matches: 153, Mismatches: 21, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
112 1 0.01
113 96 0.63
114 55 0.36
115 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (114 bp):
GCATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGACCGACCATTTACGGCGCTTTCTGAAAAAT
GCCGCAAAAAATTAAGCACACTGCCGTCGCTTTATGTTGAGCTTTAGTG
Found at i:23891731 original size:40 final size:40
Alignment explanation
Indices: 23891687--23891780 Score: 125
Period size: 40 Copynumber: 2.4 Consensus size: 40
23891677 TAGTAGTGCA
*
23891687 TTTTGAAAAATGCCACAATAGATCGAGCATTAGCGGCGCT
1 TTTTGAAAAATGCCACAATAGATCGACCATTAGCGGCGCT
* ** * * *
23891727 TTTTGAAAAATACTGCTATAGTTCGACCATTAGGGGCGCT
1 TTTTGAAAAATGCCACAATAGATCGACCATTAGCGGCGCT
23891767 TTTTGAAAAATGCC
1 TTTTGAAAAATGCC
23891781 GCAAAAAAAT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (40 bp):
TTTTGAAAAATGCCACAATAGATCGACCATTAGCGGCGCT
Found at i:23891889 original size:14 final size:15
Alignment explanation
Indices: 23891855--23891917 Score: 78
Period size: 15 Copynumber: 4.4 Consensus size: 15
23891845 ACTTTTTTAA
23891855 GGTTTAGGGATTATG
1 GGTTTAGGGATTATG
23891870 GGTTTAGGGATTAT-
1 GGTTTAGGGATTATG
* *
23891884 GGTTTATGGTTTATG
1 GGTTTAGGGATTATG
*
23891899 GGTTAAGGG-TTA-G
1 GGTTTAGGGATTATG
23891912 GGTTTA
1 GGTTTA
23891918 AGGTTTAGGG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
13 6 0.14
14 15 0.36
15 21 0.50
ACGTcount: A:0.19, C:0.00, G:0.38, T:0.43
Consensus pattern (15 bp):
GGTTTAGGGATTATG
Found at i:23891918 original size:14 final size:14
Alignment explanation
Indices: 23891850--23891989 Score: 86
Period size: 14 Copynumber: 9.8 Consensus size: 14
23891840 TAGTTACTTT
* *
23891850 TTTAAGGTTTAGGG
1 TTTAGGGTTTAAGG
* *
23891864 ATTATGGGTTTAGGG
1 TTTA-GGGTTTAAGG
* * *
23891879 ATTATGGTTTATGG
1 TTTAGGGTTTAAGG
23891893 TTTATGGG-TTAAGG
1 TTTA-GGGTTTAAGG
*
23891907 GTTAGGGTTTAAGG
1 TTTAGGGTTTAAGG
* *
23891921 TTTAGGGGGTTGAGG
1 TTTA-GGGTTTAAGG
* * *
23891936 TTTAAGTTTTAGGGG
1 TTTAGGGTTTA-AGG
*
23891951 TTAAGGGTTT-AGG
1 TTTAGGGTTTAAGG
23891964 ATTTAGGGTTTAAGG
1 -TTTAGGGTTTAAGG
*
23891979 TTTAGTGTTTA
1 TTTAGGGTTTA
23891990 GATTAATTAG
Statistics
Matches: 97, Mismatches: 22, Indels: 14
0.73 0.17 0.11
Matches are distributed among these distances:
13 5 0.05
14 53 0.55
15 39 0.40
ACGTcount: A:0.21, C:0.00, G:0.36, T:0.43
Consensus pattern (14 bp):
TTTAGGGTTTAAGG
Found at i:23891950 original size:21 final size:21
Alignment explanation
Indices: 23891905--23891990 Score: 84
Period size: 22 Copynumber: 4.0 Consensus size: 21
23891895 TATGGGTTAA
* *
23891905 GGGTTAGGGTTTAAGGTTTAGG
1 GGGTTAAGGTTTAAGTTTTA-G
*
23891927 GGGTTGAGGTTTAAGTTTTAG
1 GGGTTAAGGTTTAAGTTTTAG
* *
23891948 GGGTTAAGGGTTTAGGATTTAG
1 GGGTTAA-GGTTTAAGTTTTAG
*
23891970 GGTTTAAGGTTT-AGTGTTTAG
1 GGGTTAAGGTTTAAGT-TTTAG
23891991 ATTAATTAGT
Statistics
Matches: 53, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
20 1 0.02
21 17 0.32
22 35 0.66
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.41
Consensus pattern (21 bp):
GGGTTAAGGTTTAAGTTTTAG
Found at i:23891980 original size:7 final size:7
Alignment explanation
Indices: 23891850--23891982 Score: 61
Period size: 7 Copynumber: 18.6 Consensus size: 7
23891840 TAGTTACTTT
23891850 TTTAAGG
1 TTTAAGG
*
23891857 TTTAGGG
1 TTTAAGG
* *
23891864 ATTATGGG
1 TTTA-AGG
*
23891872 TTTAGGG
1 TTTAAGG
* *
23891879 ATTATGG
1 TTTAAGG
*
23891886 TTTATGG
1 TTTAAGG
*
23891893 TTTATGG
1 TTTAAGG
*
23891900 GTTAAGG
1 TTTAAGG
* *
23891907 GTTAGGG
1 TTTAAGG
23891914 TTTAAGG
1 TTTAAGG
*
23891921 TTTAGGGG
1 TTTA-AGG
* *
23891929 GTTGAGG
1 TTTAAGG
*
23891936 TTTAAGT
1 TTTAAGG
*
23891943 TTTAGGG
1 TTTAAGG
*
23891950 GTTAAGGG
1 TTTAA-GG
23891958 TTT-AGG
1 TTTAAGG
*
23891964 ATTTAGGG
1 -TTTAAGG
23891972 TTTAAGG
1 TTTAAGG
23891979 TTTA
1 TTTA
23891983 GTGTTTAGAT
Statistics
Matches: 96, Mismatches: 25, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
6 2 0.02
7 78 0.81
8 16 0.17
ACGTcount: A:0.21, C:0.00, G:0.37, T:0.42
Consensus pattern (7 bp):
TTTAAGG
Found at i:23894401 original size:5 final size:5
Alignment explanation
Indices: 23894391--23894418 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
23894381 TTGTATGTTC
23894391 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
23894419 CACACTACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:23898068 original size:27 final size:26
Alignment explanation
Indices: 23898009--23898121 Score: 120
Period size: 27 Copynumber: 4.2 Consensus size: 26
23897999 AGGAAGCGTC
* *
23898009 CTGGTGGCTATGCCATAAATTATCTGATT
1 CTGGTGGCTCTGCC--ACATTATCTG-TT
23898038 -TGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
23898064 CTGGTGGCTCTACCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
23898092 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
23898118 CTGG
1 CTGG
23898122 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
26 10 0.14
27 36 0.49
28 28 0.38
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:23900242 original size:27 final size:27
Alignment explanation
Indices: 23900191--23900280 Score: 110
Period size: 27 Copynumber: 3.2 Consensus size: 27
23900181 GTGACAGAGT
23900191 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* * *
23900220 CACCAGAACGGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
23900247 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
23900275 CACCAG
1 CACCAG
23900281 GATGCTTCCT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 23 0.43
28 23 0.43
29 7 0.13
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:23900433 original size:28 final size:28
Alignment explanation
Indices: 23900390--23900450 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 28
23900380 TAACCCTAAA
*
23900390 GGTATAAAGGTCATTTTGCATACATAGG
1 GGTATAAAGGTAATTTTGCATACATAGG
* *
23900418 GGTATAATGGTAATTTTGCATATATAGG
1 GGTATAAAGGTAATTTTGCATACATAGG
23900446 GGTAT
1 GGTAT
23900451 TCTAGTACAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.36
Consensus pattern (28 bp):
GGTATAAAGGTAATTTTGCATACATAGG
Found at i:23908102 original size:55 final size:56
Alignment explanation
Indices: 23908037--23908151 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
23908027 AGCATGGCTG
* *
23908037 CCAGATACAGA-AAATGTGACAAAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAAAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
23908093 CCAGA-ACAGATATATGTGGCAAGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAAAGCCACCAGAACAGATAATTTGTGGCATAGCCA
23908148 CCAG
1 CCAG
23908152 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.56
56 22 0.42
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAAAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:23908119 original size:27 final size:27
Alignment explanation
Indices: 23908062--23908151 Score: 112
Period size: 28 Copynumber: 3.2 Consensus size: 27
23908052 GTGACAAAGT
23908062 CACCAGATACAGATATTTTGTGGC-AGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAAG-GC
*
23908091 CACCAGAACAGATATATGTGGCAAGGC
1 CACCAGAACAGATATTTGTGGCAAGGC
23908118 CACCAGAACAGATAATTTGTGGCATA-GC
1 CACCAGAACAGAT-ATTTGTGGCA-AGGC
23908146 CACCAG
1 CACCAG
23908152 GACGCTTCCT
Statistics
Matches: 56, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
27 22 0.39
28 26 0.46
29 8 0.14
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAAGGC
Found at i:23908147 original size:28 final size:28
Alignment explanation
Indices: 23908062--23908151 Score: 114
Period size: 27 Copynumber: 3.2 Consensus size: 28
23908052 GTGACAAAGT
*
23908062 CACCAGATACAGATATTTTGTGGCAGT-GC
1 CACCAGA-ACAGATAATTTGTGGCA-TAGC
*
23908091 CACCAGAACAGAT-ATATGTGGCA-AGGC
1 CACCAGAACAGATAATTTGTGGCATA-GC
23908118 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCATAGC
23908146 CACCAG
1 CACCAG
23908152 GACGCTTCCT
Statistics
Matches: 54, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
27 23 0.43
28 23 0.43
29 8 0.15
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.20
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCATAGC
Found at i:23908304 original size:28 final size:28
Alignment explanation
Indices: 23908257--23908321 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
23908247 AAATTAACCC
*
23908257 TAGGGGTATAAAGGTCATTTTACATACA
1 TAGGGGTATAAAGGTAATTTTACATACA
* *
23908285 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTACATACA
23908313 TAGGGGTAT
1 TAGGGGTAT
23908322 TCTAGTACAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.26, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTACATACA
Found at i:23910246 original size:40 final size:40
Alignment explanation
Indices: 23910160--23910255 Score: 113
Period size: 40 Copynumber: 2.4 Consensus size: 40
23910150 AGCTATAGAG
* * *
23910160 GCATTAGCGGCGTTTTGTGTAAAATGCTGCAACATATCGA
1 GCATTAGCGGCGTTTTGTGTAAAACGCTGCAAAATATCAA
* * *
23910200 GAATTAGCGGCG-TTTGTTGTAAAACGCTGCAAAATGTTAA
1 GCATTAGCGGCGTTTTG-TGTAAAACGCTGCAAAATATCAA
*
23910240 TCATTAGCGGCGTTTT
1 GCATTAGCGGCGTTTT
23910256 TTCTTAAAAT
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
39 4 0.09
40 39 0.85
41 3 0.07
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (40 bp):
GCATTAGCGGCGTTTTGTGTAAAACGCTGCAAAATATCAA
Found at i:23910974 original size:15 final size:15
Alignment explanation
Indices: 23910954--23910985 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
23910944 TTTAACTTAG
23910954 AAGATAAATATAAAT
1 AAGATAAATATAAAT
*
23910969 AAGATAAATATATAT
1 AAGATAAATATAAAT
23910984 AA
1 AA
23910986 ATTATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (15 bp):
AAGATAAATATAAAT
Found at i:23911127 original size:21 final size:21
Alignment explanation
Indices: 23911103--23911149 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
23911093 CTTGTAAAAT
23911103 ATTAACA-CAATTATTTATATA
1 ATTAACATC-ATTATTTATATA
* *
23911124 ATTAACATCATTTTTTATTTA
1 ATTAACATCATTATTTATATA
23911145 ATTAA
1 ATTAA
23911150 TTTATATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 22 0.96
22 1 0.04
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (21 bp):
ATTAACATCATTATTTATATA
Found at i:23913807 original size:16 final size:16
Alignment explanation
Indices: 23913786--23913821 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
23913776 AAATCGTACA
23913786 AAAATGAATATAAGAT
1 AAAATGAATATAAGAT
23913802 AAAATGAATATAAGAT
1 AAAATGAATATAAGAT
23913818 AAAA
1 AAAA
23913822 CTATAGACTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.67, C:0.00, G:0.11, T:0.22
Consensus pattern (16 bp):
AAAATGAATATAAGAT
Found at i:23914510 original size:47 final size:47
Alignment explanation
Indices: 23914456--23914786 Score: 450
Period size: 47 Copynumber: 7.0 Consensus size: 47
23914446 GATTTTATGA
** * ** *
23914456 GATGAATGTGAATGTGTATATATGACATAAGGCCTAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
23914503 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
23914550 CATGAATGTGAACATGCATATATGTGATAAGGCCGAATGACCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
23914597 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
23914644 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* ** *
23914691 GATGAATGTGAACATGCATATGTGTGATAAGGTAGAATGGCTAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* * * ** *
23914738 GATAAATGTGGAA-GTGTATATATGTGGCGAA-GCCGAATGGCTAATGT
1 GATGAATGT-GAACATGCATATATGT-GATAAGGCCGAATGGCCAATGT
23914785 GA
1 GA
23914787 GATATGTATG
Statistics
Matches: 258, Mismatches: 24, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
47 252 0.98
48 6 0.02
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.27
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:23914646 original size:22 final size:22
Alignment explanation
Indices: 23914618--23914693 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
23914608 ACATGCATAT
23914618 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* *
23914640 ATGTGATGAATG-TGAACAT-G-CA
1 ATGTGAT-AAGGCCG-A-ATGGCCA
23914662 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
23914687 ATGTGAT
1 ATGTGAT
23914694 GAATGTGAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:23916011 original size:36 final size:36
Alignment explanation
Indices: 23915886--23916031 Score: 168
Period size: 37 Copynumber: 4.0 Consensus size: 36
23915876 AATCGTTCTC
* ** *
23915886 CCCGTGCATTGCAACCCATCTCCTCTGTCTG-TTTCG
1 CCCGTGCATCGCAACCCATCTCCTCCATC-GCCTTCG
* * *
23915922 CCCTATGCATCGGAACCCATCCCCTCCATCGCCTTCG
1 CCC-GTGCATCGCAACCCATCTCCTCCATCGCCTTCG
* *
23915959 CCCCGTGCATCACAACCAATCTCCTCCATCGCCTTCG
1 -CCCGTGCATCGCAACCCATCTCCTCCATCGCCTTCG
*
23915996 CCCGTGCATCGCAACCCATCTCCTCCATCACCTTCG
1 CCCGTGCATCGCAACCCATCTCCTCCATCGCCTTCG
23916032 TGCATAGCCT
Statistics
Matches: 92, Mismatches: 15, Indels: 6
0.81 0.13 0.05
Matches are distributed among these distances:
36 37 0.40
37 52 0.57
38 3 0.03
ACGTcount: A:0.16, C:0.47, G:0.13, T:0.25
Consensus pattern (36 bp):
CCCGTGCATCGCAACCCATCTCCTCCATCGCCTTCG
Found at i:23917568 original size:43 final size:43
Alignment explanation
Indices: 23917506--23917729 Score: 147
Period size: 45 Copynumber: 5.1 Consensus size: 43
23917496 CTTACTTACA
* * *
23917506 TTAATACTATAAAATGGATCATTTCTGCTCAATTTGCAGCCTT
1 TTAATACTGTAAAAGGGATCATTTCTGCTCAATTTGCAACCTT
* * * * *
23917549 TTAATACTGTAAAAGGGATCATATATACT-TATGTT-CTTA-CTT
1 TTAATACTGTAAAAGGGATCATTTCTGCTCAAT-TTGC-AACCTT
*
23917591 ACATTAATACTGTTAAAGGGATCATTTCTGCTCAATTTGCAACCTT
1 ---TTAATACTGTAAAAGGGATCATTTCTGCTCAATTTGCAACCTT
* * * ** * *
23917637 TTAATACTGT-AAAGGGAACATATATAAT-TATGTT-CTTA-CTT
1 TTAATACTGTAAAAGGGATCATTTCTGCTCAAT-TTGC-AACCTT
*
23917678 ACATTAATACTATAAAAGGGATCATTTCTGCTCAATTTGCAACCTT
1 ---TTAATACTGTAAAAGGGATCATTTCTGCTCAATTTGCAACCTT
*
23917724 TAAATA
1 TTAATA
23917730 ATATTATACC
Statistics
Matches: 134, Mismatches: 30, Indels: 34
0.68 0.15 0.17
Matches are distributed among these distances:
41 6 0.04
42 22 0.16
43 41 0.31
44 9 0.07
45 44 0.33
46 12 0.09
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.39
Consensus pattern (43 bp):
TTAATACTGTAAAAGGGATCATTTCTGCTCAATTTGCAACCTT
Found at i:23917609 original size:45 final size:45
Alignment explanation
Indices: 23917549--23917702 Score: 158
Period size: 45 Copynumber: 3.5 Consensus size: 45
23917539 TTGCAGCCTT
23917549 TTAATACTGTAAAAGGGATCATATATACTTATGTTCTTACTTACA
1 TTAATACTGTAAAAGGGATCATATATACTTATGTTCTTACTTACA
* * * * * *
23917594 TTAATACTGTTAAAGGGATCATTTCTGCTCAAT-TTGC-AACCTT---
1 TTAATACTGTAAAAGGGATCATATATACT-TATGTT-CTTA-CTTACA
* *
23917637 TTAATACTGT-AAAGGGAACATATATAATTATGTTCTTACTTACA
1 TTAATACTGTAAAAGGGATCATATATACTTATGTTCTTACTTACA
*
23917681 TTAATACTATAAAAGGGATCAT
1 TTAATACTGTAAAAGGGATCAT
23917703 TTCTGCTCAA
Statistics
Matches: 85, Mismatches: 15, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
41 6 0.07
42 16 0.19
43 10 0.12
44 9 0.11
45 38 0.45
46 6 0.07
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (45 bp):
TTAATACTGTAAAAGGGATCATATATACTTATGTTCTTACTTACA
Found at i:23917696 original size:87 final size:88
Alignment explanation
Indices: 23917490--23917729 Score: 410
Period size: 87 Copynumber: 2.7 Consensus size: 88
23917480 CTTACTTACA
* *
23917490 TATGTTCTTACTTACATTAATACTATAAAATGGATCATTTCTGCTCAATTTGCAGCCTTTTAATA
1 TATGTTCTTACTTACATTAATACTATAAAAGGGATCATTTCTGCTCAATTTGCAACCTTTTAATA
* *
23917555 CTGTAAAAGGGATCATATATACT
66 CTGTAAAAGGGAACATATATAAT
* *
23917578 TATGTTCTTACTTACATTAATACTGTTAAAGGGATCATTTCTGCTCAATTTGCAACCTTTTAATA
1 TATGTTCTTACTTACATTAATACTATAAAAGGGATCATTTCTGCTCAATTTGCAACCTTTTAATA
23917643 CTGT-AAAGGGAACATATATAAT
66 CTGTAAAAGGGAACATATATAAT
*
23917665 TATGTTCTTACTTACATTAATACTATAAAAGGGATCATTTCTGCTCAATTTGCAACCTTTAAATA
1 TATGTTCTTACTTACATTAATACTATAAAAGGGATCATTTCTGCTCAATTTGCAACCTTTTAATA
23917730 ATATTATACC
Statistics
Matches: 143, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
87 78 0.55
88 65 0.45
ACGTcount: A:0.33, C:0.16, G:0.11, T:0.40
Consensus pattern (88 bp):
TATGTTCTTACTTACATTAATACTATAAAAGGGATCATTTCTGCTCAATTTGCAACCTTTTAATA
CTGTAAAAGGGAACATATATAAT
Found at i:23918042 original size:25 final size:26
Alignment explanation
Indices: 23917990--23918044 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 26
23917980 AAAATTGGTG
* *
23917990 ATATATTTTAATTATATTTATTATTT
1 ATATATTTTAATAATATTTATTAATT
* *
23918016 ATAT-TTTTAATAATGTTTTTTAATT
1 ATATATTTTAATAATATTTATTAATT
23918041 ATAT
1 ATAT
23918045 GAAGTAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.64
Consensus pattern (26 bp):
ATATATTTTAATAATATTTATTAATT
Found at i:23918593 original size:52 final size:50
Alignment explanation
Indices: 23918533--23918811 Score: 316
Period size: 52 Copynumber: 5.7 Consensus size: 50
23918523 ATCTTAATTT
*
23918533 TAAATATATATCATATCATAACTTACATAACTTATATACCTTACAATATACA
1 TAAATATATATCATATCATAACTTACATAACTTACATA-CTTAC-ATATACA
* *
23918585 TAAATATATATCATATAATAACTTACATAACTTACAAAACTTACATAATACA
1 TAAATATATATCATATCATAACTTACATAACTTAC-ATACTTACAT-ATACA
23918637 TAAATATATATCATA-CAATAAC---C-T-ACTT--A-ACTTACATATTACA
1 TAAATATATATCATATC-ATAACTTACATAACTTACATACTTACATA-TACA
23918680 TAAATATATATCATATCATAACTTACATAACTTACATTACTTACATAATACA
1 TAAATATATATCATATCATAACTTACATAACTTACA-TACTTACAT-ATACA
* * *
23918732 TAAATGTATTTCATATCATAATTTACATAACTTACATAC---C-T-TACA
1 TAAATATATATCATATCATAACTTACATAACTTACATACTTACATATACA
* *
23918777 TAAATTTATATCATATCATAACTTAAATAACTTAC
1 TAAATATATATCATATCATAACTTACATAACTTAC
23918812 CAAACTTGCT
Statistics
Matches: 201, Mismatches: 11, Indels: 37
0.81 0.04 0.15
Matches are distributed among these distances:
42 1 0.00
43 32 0.16
44 2 0.01
45 35 0.17
46 1 0.00
47 6 0.03
48 6 0.03
49 1 0.00
50 1 0.00
51 5 0.02
52 108 0.54
53 3 0.01
ACGTcount: A:0.46, C:0.17, G:0.00, T:0.37
Consensus pattern (50 bp):
TAAATATATATCATATCATAACTTACATAACTTACATACTTACATATACA
Found at i:23918614 original size:9 final size:9
Alignment explanation
Indices: 23918602--23918829 Score: 93
Period size: 9 Copynumber: 26.0 Consensus size: 9
23918592 ATATCATATA
23918602 ATAACTTAC
1 ATAACTTAC
23918611 ATAACTTAC
1 ATAACTTAC
*
23918620 AAAACTTAC
1 ATAACTTAC
23918629 ATAA--TAC
1 ATAACTTAC
* *
23918636 ATAA-ATAT
1 ATAACTTAC
* *
23918644 ATATCATAC
1 ATAACTTAC
*
23918653 AATAACCTAC
1 -ATAACTTAC
*
23918663 TTAACTTAC
1 ATAACTTAC
23918672 AT-A-TTAC
1 ATAACTTAC
* *
23918679 ATAA-ATAT
1 ATAACTTAC
* *
23918687 ATATCATATC
1 ATAACTTA-C
23918697 ATAACTTAC
1 ATAACTTAC
23918706 ATAACTTAC
1 ATAACTTAC
*
23918715 ATTACTTAC
1 ATAACTTAC
23918724 ATAA--TAC
1 ATAACTTAC
*
23918731 ATAAATGT--
1 ATAACT-TAC
** *
23918739 ATTTCATATC
1 ATAACTTA-C
*
23918749 ATAATTTAC
1 ATAACTTAC
23918758 ATAACTTAC
1 ATAACTTAC
*
23918767 ATACCTTAC
1 ATAACTTAC
* *
23918776 ATAAATT-T
1 ATAACTTAC
* *
23918784 ATATCATATC
1 ATAACTTA-C
*
23918794 ATAACTTAA
1 ATAACTTAC
23918803 ATAACTTACC
1 ATAACTTA-C
*
23918813 A-AACTTGC
1 ATAACTTAC
*
23918821 TTAACTTAC
1 ATAACTTAC
23918830 GTAATACATA
Statistics
Matches: 161, Mismatches: 42, Indels: 32
0.69 0.18 0.14
Matches are distributed among these distances:
7 21 0.13
8 19 0.12
9 96 0.60
10 25 0.16
ACGTcount: A:0.45, C:0.18, G:0.01, T:0.36
Consensus pattern (9 bp):
ATAACTTAC
Found at i:23918621 original size:43 final size:43
Alignment explanation
Indices: 23918559--23918715 Score: 163
Period size: 43 Copynumber: 3.4 Consensus size: 43
23918549 CATAACTTAC
* *
23918559 ATAACTTATATACCTTACAATATACATAAATATATATCATATA
1 ATAACTTACATAACTTACAATATACATAAATATATATCATATA
*
23918602 ATAACTTACATAACTTACAAAACTTACATAATACATAAATATATATCATACA
1 ATAACTTACATAACTT-----AC--A-AT-ATACATAAATATATATCATATA
* * *
23918654 ATAACCTACTTAACTTAC-ATATTACATAAATATATATCATATC
1 ATAACTTACATAACTTACAATA-TACATAAATATATATCATATA
23918697 ATAACTTACATAACTTACA
1 ATAACTTACATAACTTACA
23918716 TTACTTACAT
Statistics
Matches: 94, Mismatches: 9, Indels: 21
0.76 0.07 0.17
Matches are distributed among these distances:
42 1 0.01
43 51 0.54
47 2 0.02
48 2 0.02
50 1 0.01
51 2 0.02
52 35 0.37
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.34
Consensus pattern (43 bp):
ATAACTTACATAACTTACAATATACATAAATATATATCATATA
Found at i:23918687 original size:95 final size:95
Alignment explanation
Indices: 23918558--23918818 Score: 346
Period size: 95 Copynumber: 2.7 Consensus size: 95
23918548 TCATAACTTA
* * * *
23918558 CATAACTTATATACCTTACA-ATATACATAAATATATATCATATAATAACTTACATAACTTACAA
1 CATAACCTACATAACTTACATAT-TACATAAATATATATCATATCATAACTTACATAACTTACAA
23918622 AACTTACATAATACATAAATATATATCATA-
65 AACTTACATAATACATAAATATATATCATAT
* *
23918652 CAATAACCTACTTAACTTACATATTACATAAATATATATCATATCATAACTTACATAACTTACAT
1 C-ATAACCTACATAACTTACATATTACATAAATATATATCATATCATAACTTACATAACTTACAA
* * *
23918717 TACTTACATAATACATAAATGTATTTCATAT
65 AACTTACATAATACATAAATATATATCATAT
** * * *
23918748 CATAATTTACATAACTTACATACCTTACATAAATTTATATCATATCATAACTTAAATAACTTACC
1 CATAACCTACATAACTTACATA--TTACATAAATATATATCATATCATAACTTACATAACTTACA
23918813 AAACTT
64 AAACTT
23918819 GCTTAACTTA
Statistics
Matches: 145, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
94 1 0.01
95 99 0.68
96 3 0.02
97 42 0.29
ACGTcount: A:0.46, C:0.18, G:0.00, T:0.36
Consensus pattern (95 bp):
CATAACCTACATAACTTACATATTACATAAATATATATCATATCATAACTTACATAACTTACAAA
ACTTACATAATACATAAATATATATCATAT
Found at i:23918716 original size:43 final size:44
Alignment explanation
Indices: 23918610--23918811 Score: 221
Period size: 43 Copynumber: 4.4 Consensus size: 44
23918600 TAATAACTTA
* *
23918610 CATAACTTACAAAACTTACATA-ATACATAAATATATATCATA-
1 CATAACTTACATAACTTACATACTTACATAAATATATATCATAT
* *
23918652 CAATAACCTACTTAACTTACATA-TTACATAAATATATATCATAT
1 C-ATAACTTACATAACTTACATACTTACATAAATATATATCATAT
*
23918696 CATAACTTACATAACTTACATTACTTACATAATACATAAATGTATTTCATAT
1 CATAACTTACATAACTTACA-TACTTACAT-A-A-AT--A--TATATCATAT
* *
23918748 CATAATTTACATAACTTACATACCTTACATAAATTTATATCATAT
1 CATAACTTACATAACTTACATA-CTTACATAAATATATATCATAT
*
23918793 CATAACTTAAATAACTTAC
1 CATAACTTACATAACTTAC
23918812 CAAACTTGCT
Statistics
Matches: 136, Mismatches: 12, Indels: 21
0.80 0.07 0.12
Matches are distributed among these distances:
42 1 0.01
43 54 0.40
44 3 0.02
45 32 0.24
46 1 0.01
47 1 0.01
48 2 0.01
49 2 0.01
50 2 0.01
51 3 0.02
52 35 0.26
ACGTcount: A:0.46, C:0.18, G:0.00, T:0.36
Consensus pattern (44 bp):
CATAACTTACATAACTTACATACTTACATAAATATATATCATAT
Found at i:23924711 original size:31 final size:31
Alignment explanation
Indices: 23924676--23924741 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
23924666 GTATTTTTTT
*
23924676 ATGCTACATTTGTT-TTGTTTTGTTGGATTCA
1 ATGCTACATTTGTTGTT-TTTGGTTGGATTCA
* *
23924707 ATGCTATATTTGTTGTTTTTGGTTGGATTTA
1 ATGCTACATTTGTTGTTTTTGGTTGGATTCA
23924738 ATGC
1 ATGC
23924742 AGGAAGGGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
31 29 0.94
32 2 0.06
ACGTcount: A:0.17, C:0.08, G:0.21, T:0.55
Consensus pattern (31 bp):
ATGCTACATTTGTTGTTTTTGGTTGGATTCA
Found at i:23924899 original size:42 final size:43
Alignment explanation
Indices: 23924813--23924921 Score: 139
Period size: 42 Copynumber: 2.5 Consensus size: 43
23924803 GTAACAAAGG
* * * *
23924813 CGTCGTTAAAAGCCATGACTTGTAGTAGCGCTTTTCTCATAAA
1 CGTCGCTAAAAGCCATGACTTTTAGTAGCGCTTTTCCCACAAA
* *
23924856 CGTCGCTAAAGGCCATGACTTTTAG-GGCGCTTTTCCCACAAA
1 CGTCGCTAAAAGCCATGACTTTTAGTAGCGCTTTTCCCACAAA
*
23924898 CGCCGCTAAAAGCCATGATCTTTT
1 CGTCGCTAAAAGCCATGA-CTTTT
23924922 GTGGCATTTT
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 30 0.53
43 27 0.47
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (43 bp):
CGTCGCTAAAAGCCATGACTTTTAGTAGCGCTTTTCCCACAAA
Found at i:23925564 original size:39 final size:39
Alignment explanation
Indices: 23925480--23925583 Score: 113
Period size: 39 Copynumber: 2.6 Consensus size: 39
23925470 CTTTAGTGTT
* *
23925480 ATTAGTAGCGTTTTT-ATAAAAGCGCCGCTATAGATCGAGA
1 ATTAGCAGCGTTTTTGA-AAAA-CGCCGCTATAGATAGAGA
*
23925520 ATTAGCAGCGCTTTTTGAAAAACGCCGC-ATAGGTAGAGA
1 ATTAGCAGCG-TTTTTGAAAAACGCCGCTATAGATAGAGA
* *
23925559 ATTAGCGGCGTTTTTTGGAAAACGC
1 ATTAGCAGCG-TTTTTGAAAAACGC
23925584 TCAAAATAAT
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
39 31 0.55
40 15 0.27
41 9 0.16
42 1 0.02
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (39 bp):
ATTAGCAGCGTTTTTGAAAAACGCCGCTATAGATAGAGA
Found at i:23925732 original size:40 final size:40
Alignment explanation
Indices: 23925630--23925732 Score: 134
Period size: 40 Copynumber: 2.5 Consensus size: 40
23925620 TGTTGAGCCT
* * *
23925630 TCGAGGCATTAGCAGCGCTTTTTGAACAACGCCACTATAGA
1 TCGA-GCATTAGCGGCACTTTTTGAAAAACGCCACTATAGA
* *
23925671 TCGAGCATTAGCGGCACTTTTTGAAAAACGCCGCTATAGG
1 TCGAGCATTAGCGGCACTTTTTGAAAAACGCCACTATAGA
* *
23925711 TCGAGCATTAGTGGCATTTTTT
1 TCGAGCATTAGCGGCACTTTTT
23925733 AACAAACACC
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
40 51 0.93
41 4 0.07
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29
Consensus pattern (40 bp):
TCGAGCATTAGCGGCACTTTTTGAAAAACGCCACTATAGA
Found at i:23925821 original size:153 final size:154
Alignment explanation
Indices: 23925458--23925851 Score: 458
Period size: 153 Copynumber: 2.5 Consensus size: 154
23925448 AACACCGTCG
* * ** *
23925458 TTTTATGTTGAGCTTTAGTGTTATTAGTAGCG-TTTTT-ATAAAAGCGCCGCTATAGATCGAGAA
1 TTTTTTGTTGAGCCTTAGTGGCATTAGTAGCGCTTTTTGA-AAAA-CGCCGCTATAGATCGAGCA
* * * * *
23925521 TTAGCAGCGCTTTTTGAAAAACGCCGCATAGGTAGAGAATTAGCGGCGTTTTTTGGAAAACGCTC
64 TTAGCGGCGCTTTTTGAAAAACGCCGCATAGGTAGAGAATTAGCGGCATTTTTTGAAAAACCCGC
*
23925586 AAAATAATTCATCAACAAGTCGTCCTTTT
129 AAAATAATTCATCAAC-A-TCGTCC-TGT
* * * * *
23925615 TTTTTTGTTGAGCCTTCGAGGCATTAGCAGCGCTTTTTGAACAACGCCACTATAGATCGAGCATT
1 TTTTTTGTTGAGCCTTAGTGGCATTAGTAGCGCTTTTTGAAAAACGCCGCTATAGATCGAGCATT
* * * *
23925680 AGCGGCACTTTTTGAAAAACGCCGCTATAGGTCGAGCATTAGTGGCATTTTTT-AACAAACACCG
66 AGCGGCGCTTTTTGAAAAACGCCGC-ATAGGTAGAGAATTAGCGGCATTTTTTGAA-AAAC-CCG
23925744 CAAAATAATTCATCAAC-TCG-CC-GT
128 CAAAATAATTCATCAACATCGTCCTGT
* *
23925768 TTTTTTGTTGAGCCTTAGTGGCATTAGTGGCGCTTTTTGAAAAACGCCGCTATAGATCGAGCTTT
1 TTTTTTGTTGAGCCTTAGTGGCATTAGTAGCGCTTTTTGAAAAACGCCGCTATAGATCGAGCATT
* *
23925833 AGCGGTGCTTTTTCAAAAA
66 AGCGGCGCTTTTTGAAAAA
23925852 ATGCCGTAAA
Statistics
Matches: 202, Mismatches: 30, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
153 75 0.37
155 2 0.01
156 3 0.01
157 68 0.34
158 35 0.17
159 19 0.09
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (154 bp):
TTTTTTGTTGAGCCTTAGTGGCATTAGTAGCGCTTTTTGAAAAACGCCGCTATAGATCGAGCATT
AGCGGCGCTTTTTGAAAAACGCCGCATAGGTAGAGAATTAGCGGCATTTTTTGAAAAACCCGCAA
AATAATTCATCAACATCGTCCTGT
Found at i:23926175 original size:7 final size:7
Alignment explanation
Indices: 23926160--23926374 Score: 99
Period size: 7 Copynumber: 29.4 Consensus size: 7
23926150 TTAATTATCA
*
23926160 TTATAGT
1 TTATGGT
23926167 TTATGGT
1 TTATGGT
*
23926174 TTAGGGT
1 TTATGGT
*
23926181 TTAGGGT
1 TTATGGT
**
23926188 ACATGGT
1 TTATGGT
*
23926195 TTAGGGT
1 TTATGGT
23926202 TTATGGTT
1 TTATGG-T
23926210 TATGATGAGT
1 T-T-ATG-GT
* **
23926220 TAATATT
1 TTATGGT
*
23926227 TTAAGGT
1 TTATGGT
*
23926234 TTATGGA
1 TTATGGT
23926241 TTATGGGT
1 TTAT-GGT
*
23926249 TTAAGGT
1 TTATGGT
*
23926256 TTAAGGT
1 TTATGGT
*
23926263 TTAGGGGT
1 TTA-TGGT
23926271 TTATGGT
1 TTATGGT
23926278 TTATGAGT
1 TTATG-GT
* **
23926286 TAATATT
1 TTATGGT
*
23926293 TTAAGGT
1 TTATGGT
*
23926300 TTATGGA
1 TTATGGT
23926307 TTATGGAT
1 TTATGG-T
* *
23926315 TTAGGGA
1 TTATGGT
23926322 TTATGGT
1 TTATGGT
*
23926329 CTATGGT
1 TTATGGT
*
23926336 TTAAGGGT
1 TT-ATGGT
*
23926344 TGA-GGT
1 TTATGGT
*
23926350 TTAGGGTT
1 TTATGG-T
*
23926358 TTAAGGT
1 TTATGGT
23926365 TTATGGT
1 TTATGGT
23926372 TTA
1 TTA
23926375 GGGGTTAAGA
Statistics
Matches: 154, Mismatches: 43, Indels: 22
0.70 0.20 0.10
Matches are distributed among these distances:
6 5 0.03
7 106 0.69
8 36 0.23
9 1 0.01
10 5 0.03
11 1 0.01
ACGTcount: A:0.23, C:0.01, G:0.30, T:0.47
Consensus pattern (7 bp):
TTATGGT
Found at i:23926254 original size:22 final size:22
Alignment explanation
Indices: 23926226--23926380 Score: 106
Period size: 22 Copynumber: 7.1 Consensus size: 22
23926216 GAGTTAATAT
23926226 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGTTTATGGATTATGGG
* * *
23926248 TTTAAGGTTTAAGGTTTAGGGG
1 TTTAAGGTTTATGGATTATGGG
* **
23926270 TTTATGGTTTAT-GAGTTAAT-AT
1 TTTAAGGTTTATGGA-TT-ATGGG
*
23926292 TTTAAGGTTTATGGATTATGGA
1 TTTAAGGTTTATGGATTATGGG
* *
23926314 TTTAGGGATTATGG-TCTAT-GG
1 TTTAAGGTTTATGGAT-TATGGG
* *
23926335 TTTAAGGGTTGA-GGTTTA-GGG
1 TTTAA-GGTTTATGGATTATGGG
* *
23926356 TTTTAAGGTTTATGGTTTAGGGG
1 -TTTAAGGTTTATGGATTATGGG
23926379 TT
1 TT
23926381 AAGAGTTAAG
Statistics
Matches: 103, Mismatches: 19, Indels: 22
0.72 0.13 0.15
Matches are distributed among these distances:
21 20 0.19
22 77 0.75
23 6 0.06
ACGTcount: A:0.22, C:0.01, G:0.32, T:0.46
Consensus pattern (22 bp):
TTTAAGGTTTATGGATTATGGG
Found at i:23926278 original size:29 final size:28
Alignment explanation
Indices: 23926160--23926374 Score: 108
Period size: 29 Copynumber: 7.4 Consensus size: 28
23926150 TTAATTATCA
* * *
23926160 TTATAGTTTATGGTTTAGGGTTTAGGGT
1 TTATGGTTTAAGGTTTAGGGTTTATGGT
** * *
23926188 ACATGGTTTAGGGTTTATGGTTTATGATGAGT
1 TTATGGTTTAAGGTTTA-GGGTT-T-ATG-GT
* ** * *
23926220 TAATATTTTAAGGTTTATGGATTATGGGT
1 TTATGGTTTAAGGTTTAGGGTTTAT-GGT
*
23926249 TTAAGGTTTAAGGTTTAGGGGTTTATGGT
1 TTATGGTTTAAGGTTTA-GGGTTTATGGT
** * *
23926278 TTATGAG-TTAATATTTTAAGGTTTATGGA
1 TTATG-GTTTAA-GGTTTAGGGTTTATGGT
* * * *
23926307 TTATGGATTTAGGGATTATGGTCTATGGT
1 TTATGG-TTTAAGGTTTAGGGTTTATGGT
* * * *
23926336 TTAAGGGTTGAGGTTTAGGGTTTTAAGGT
1 TTATGGTTTAAGGTTTAGGG-TTTATGGT
23926365 TTATGGTTTA
1 TTATGGTTTA
23926375 GGGGTTAAGA
Statistics
Matches: 133, Mismatches: 43, Indels: 21
0.68 0.22 0.11
Matches are distributed among these distances:
28 23 0.17
29 75 0.56
30 17 0.13
31 4 0.03
32 14 0.11
ACGTcount: A:0.23, C:0.01, G:0.30, T:0.47
Consensus pattern (28 bp):
TTATGGTTTAAGGTTTAGGGTTTATGGT
Found at i:23926380 original size:8 final size:7
Alignment explanation
Indices: 23926165--23926438 Score: 55
Period size: 7 Copynumber: 37.4 Consensus size: 7
23926155 TATCATTATA
*
23926165 GTTTATG
1 GTTTAGG
23926172 GTTTAGG
1 GTTTAGG
23926179 GTTTAGG
1 GTTTAGG
** *
23926186 GTACATG
1 GTTTAGG
23926193 GTTTAGG
1 GTTTAGG
*
23926200 GTTTATG
1 GTTTAGG
23926207 GTTTATGATG
1 GTTTA-G--G
* **
23926217 AGTTAATA
1 -GTTTAGG
* *
23926225 TTTTAAG
1 GTTTAGG
*
23926232 GTTTATG
1 GTTTAGG
*
23926239 GATTATGG
1 GTTTA-GG
*
23926247 GTTTAAG
1 GTTTAGG
*
23926254 GTTTAAG
1 GTTTAGG
23926261 GTTTAGGG
1 GTTTA-GG
*
23926269 GTTTATG
1 GTTTAGG
*
23926276 GTTTATGA
1 GTTTA-GG
* **
23926284 GTTAATA
1 GTTTAGG
* *
23926291 TTTTAAG
1 GTTTAGG
*
23926298 GTTTATG
1 GTTTAGG
*
23926305 GATTATGG
1 GTTTA-GG
*
23926313 ATTTAGG
1 GTTTAGG
* *
23926320 GATTATG
1 GTTTAGG
* *
23926327 GTCTATG
1 GTTTAGG
23926334 GTTTAAGG
1 GTTT-AGG
*
23926342 GTTGA-G
1 GTTTAGG
23926348 GTTTAGG
1 GTTTAGG
*
23926355 GTTTTAAG
1 G-TTTAGG
*
23926363 GTTTATG
1 GTTTAGG
23926370 GTTTAGGG
1 GTTTA-GG
* *
23926378 GTTAAGA
1 GTTTAGG
*
23926385 GTTAAGG
1 GTTTAGG
* *
23926392 ATTTATG
1 GTTTAGG
23926399 GTTTAGGG
1 GTTTA-GG
* *
23926407 GTTAAGA
1 GTTTAGG
**
23926414 GTGAAGG
1 GTTTAGG
*
23926421 GTTAAGG
1 GTTTAGG
23926428 GTTTAGAG
1 GTTTAG-G
23926436 GTT
1 GTT
23926439 AAAGAGACAA
Statistics
Matches: 189, Mismatches: 64, Indels: 27
0.68 0.23 0.10
Matches are distributed among these distances:
6 5 0.03
7 135 0.71
8 44 0.23
10 1 0.01
11 4 0.02
ACGTcount: A:0.23, C:0.01, G:0.33, T:0.43
Consensus pattern (7 bp):
GTTTAGG
Found at i:23926400 original size:29 final size:28
Alignment explanation
Indices: 23926358--23926465 Score: 117
Period size: 29 Copynumber: 3.8 Consensus size: 28
23926348 GTTTAGGGTT
23926358 TTAAGGTTTATGGTTTAGGGGTTAAGAG
1 TTAAGGTTTATGGTTTAGGGGTTAAGAG
23926386 TTAAGGATTTATGGTTTAGGGGTTAAGAG
1 TTAAGG-TTTATGGTTTAGGGGTTAAGAG
* * * *
23926415 TGAAGGGTTAAGGGTTTAGAGGTTAAAGAG
1 TTAA-GGTTTATGGTTTAGGGGTT-AAGAG
** * *
23926445 ACAAGGGTTATGGGTTAGGGG
1 TTAAGGTTTATGGTTTAGGGG
23926466 GTTAGAGGTT
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
28 6 0.09
29 51 0.77
30 9 0.14
ACGTcount: A:0.28, C:0.01, G:0.39, T:0.32
Consensus pattern (28 bp):
TTAAGGTTTATGGTTTAGGGGTTAAGAG
Found at i:23926402 original size:36 final size:36
Alignment explanation
Indices: 23926314--23926432 Score: 98
Period size: 36 Copynumber: 3.3 Consensus size: 36
23926304 GGATTATGGA
* * *
23926314 TTTAGGGA-TTATGGTCTATGGTTTAAGGGTTGAGG
1 TTTAAGGATTTATGGTTTATGGTTTAAGGGTTAAGG
* * * *
23926349 TTTAGGGTTTTAAGGTTTATGGTTTAGGGGTTAAGAG
1 TTTAAGGATTTATGGTTTATGGTTTAAGGGTTAAG-G
* * * *
23926386 -TTAAGGATTTATGGTTTAGGGGTTAAGAGTGAAGG
1 TTTAAGGATTTATGGTTTATGGTTTAAGGGTTAAGG
* *
23926421 GTTAAGGGTTTA
1 TTTAAGGATTTA
23926433 GAGGTTAAAG
Statistics
Matches: 67, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
35 8 0.12
36 58 0.87
37 1 0.01
ACGTcount: A:0.24, C:0.01, G:0.36, T:0.39
Consensus pattern (36 bp):
TTTAAGGATTTATGGTTTATGGTTTAAGGGTTAAGG
Found at i:23926410 original size:22 final size:21
Alignment explanation
Indices: 23926330--23926412 Score: 76
Period size: 22 Copynumber: 3.9 Consensus size: 21
23926320 GATTATGGTC
*
23926330 TATGGTTTAAGGGTTGAGGTT
1 TATGGTTTAAGGGTTAAGGTT
* * *
23926351 TAGGGTTTTAAGGTTTATGGTT
1 TATGG-TTTAAGGGTTAAGGTT
* * *
23926373 TAGGGGTTAAGAGTTAAGGATT
1 TATGGTTTAAGGGTTAAGG-TT
*
23926395 TATGGTTTAGGGGTTAAG
1 TATGGTTTAAGGGTTAAG
23926413 AGTGAAGGGT
Statistics
Matches: 48, Mismatches: 12, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
21 14 0.29
22 34 0.71
ACGTcount: A:0.23, C:0.00, G:0.36, T:0.41
Consensus pattern (21 bp):
TATGGTTTAAGGGTTAAGGTT
Found at i:23929648 original size:24 final size:24
Alignment explanation
Indices: 23929618--23929670 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
23929608 CTATGTTATA
23929618 ATATTTGTAACTAAAATTAATATT
1 ATATTTGTAACTAAAATTAATATT
*
23929642 ATATTTGTATCTAAAATTAATATT
1 ATATTTGTAACTAAAATTAATATT
23929666 ATATT
1 ATATT
23929671 ATAAAATACT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (24 bp):
ATATTTGTAACTAAAATTAATATT
Found at i:23929910 original size:13 final size:13
Alignment explanation
Indices: 23929892--23929921 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
23929882 CTGAATGTAC
23929892 ATAATCATAATAT
1 ATAATCATAATAT
23929905 ATAATCATAATAT
1 ATAATCATAATAT
23929918 ATAA
1 ATAA
23929922 AATTTTCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.37
Consensus pattern (13 bp):
ATAATCATAATAT
Found at i:23933723 original size:53 final size:48
Alignment explanation
Indices: 23933665--23933769 Score: 120
Period size: 53 Copynumber: 2.1 Consensus size: 48
23933655 GATTTTTTAA
**
23933665 TTATATGTAATATTATAATTTAAATCTTAGTCTTGTTAAATATTTCAACTATT
1 TTATATGTAATATTATAATTTAAA--TTAG--TTACTAAA-ATTTCAACTATT
* * *
23933718 TTATATGTACTATTATTATTTTAATTAGTTACTAAAATTTCAACTATT
1 TTATATGTAATATTATAATTTAAATTAGTTACTAAAATTTCAACTATT
23933766 TTAT
1 TTAT
23933770 GTATATTGTA
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
48 16 0.34
49 6 0.13
51 4 0.09
53 21 0.45
ACGTcount: A:0.35, C:0.08, G:0.05, T:0.52
Consensus pattern (48 bp):
TTATATGTAATATTATAATTTAAATTAGTTACTAAAATTTCAACTATT
Found at i:23934936 original size:13 final size:14
Alignment explanation
Indices: 23934920--23934948 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
23934910 TTTTAAATAT
23934920 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
23934933 TTATAATGGTTTAA
1 TTATAATGGTTTAA
23934947 TT
1 TT
23934949 CGTCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:23935340 original size:21 final size:21
Alignment explanation
Indices: 23935314--23935353 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
23935304 AAATTGCTCA
* *
23935314 ACTTAAAGTGGAGGCAGCACC
1 ACTTAAAGAGGAGACAGCACC
23935335 ACTTAAAGAGGAGACAGCA
1 ACTTAAAGAGGAGACAGCA
23935354 GTAAGAGAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.20, G:0.28, T:0.12
Consensus pattern (21 bp):
ACTTAAAGAGGAGACAGCACC
Found at i:23935625 original size:47 final size:47
Alignment explanation
Indices: 23935556--23935649 Score: 170
Period size: 47 Copynumber: 2.0 Consensus size: 47
23935546 CGTTGAATTT
23935556 TTGAAGTATCATTTAGATTTGCTGTTATTGGTTGGATTTGATGTTGC
1 TTGAAGTATCATTTAGATTTGCTGTTATTGGTTGGATTTGATGTTGC
* *
23935603 TTGAAGTATCATTTAGATTTGCTGTTATTTGTTGGATTTTATGTTGC
1 TTGAAGTATCATTTAGATTTGCTGTTATTGGTTGGATTTGATGTTGC
23935650 AGGAAGGATT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.19, C:0.06, G:0.23, T:0.51
Consensus pattern (47 bp):
TTGAAGTATCATTTAGATTTGCTGTTATTGGTTGGATTTGATGTTGC
Found at i:23936868 original size:42 final size:42
Alignment explanation
Indices: 23936815--23936981 Score: 190
Period size: 42 Copynumber: 4.0 Consensus size: 42
23936805 TTAAAGATCA
* *
23936815 TGTTCTCTAGCGGCGTTTGTAGGAAAAGCACCGCTAAAGGTT
1 TGTTCTATAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTT
*
23936857 TGTTCTATAGCGGTGTTTGTGGGAAAAGCACCGCTAAAGGTT
1 TGTTCTATAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTT
** * * * **
23936899 TGTTCTATAGTTGCGTTTGTGCGAAAAGCGCCGCTACAGGCCA
1 TGTTCTATAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGG-TT
* * * * *
23936942 TGTTCTTTAGTGTCGTTTGTGGGAAAAACGCCGCTAAAGG
1 TGTTCTATAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGG
23936982 CCATGTTCCT
Statistics
Matches: 107, Mismatches: 17, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
42 73 0.68
43 34 0.32
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (42 bp):
TGTTCTATAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTT
Found at i:23937087 original size:43 final size:43
Alignment explanation
Indices: 23936806--23937088 Score: 241
Period size: 43 Copynumber: 6.6 Consensus size: 43
23936796 TTAAATTTTT
* * * *
23936806 TAAAGATCATGTTCTCTAGCGGCGTTTGTAGGAAAAGCACCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTTGGAAAAGCGCCGC
* * * *
23936849 TAAAGGT-TTGTTCTATAGCGGTGTTTGTGGGAAAAGCACCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTTGGAAAAGCGCCGC
* **
23936891 TAAAGGT-TTGTTCTATAGTTGCGTTTG-TGCGAAAAGCGCCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTTG-GAAAAGCGCCGC
* * * * * * *
23936933 TACAGGCCATGTTCTTTAGTGTCGTTTGTGGGAAAAACGCCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTTGGAAAAGCGCCGC
* * * ** * *
23936976 TAAAGGCCATGTTCCT-TAACTGTTTTTGTTGTAAAAGCGACGC
1 TAAAGGTCATGTT-CTATAGCGGCGTTTGTTGGAAAAGCGCCGC
* * * * *
23937019 TAAAGGCCATGTTCTTTAGCTGCGTTTGTTGTAAAAACGCCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTTGGAAAAGCGCCGC
*
23937062 TAAAGGTCATATTCTATAGCGGCGTTT
1 TAAAGGTCATGTTCTATAGCGGCGTTT
23937089 TTTTACATAA
Statistics
Matches: 197, Mismatches: 38, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
41 1 0.01
42 73 0.37
43 120 0.61
44 3 0.02
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (43 bp):
TAAAGGTCATGTTCTATAGCGGCGTTTGTTGGAAAAGCGCCGC
Found at i:23954669 original size:17 final size:18
Alignment explanation
Indices: 23954643--23954676 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
23954633 TTTATGAAAA
23954643 TAAATAAAAG-CCCAAAT
1 TAAATAAAAGTCCCAAAT
*
23954660 TAAATGAAAGTCCCAAA
1 TAAATAAAAGTCCCAAA
23954677 AGTCTACAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.56, C:0.18, G:0.09, T:0.18
Consensus pattern (18 bp):
TAAATAAAAGTCCCAAAT
Found at i:23957382 original size:46 final size:46
Alignment explanation
Indices: 23957324--23957499 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 46
23957314 TATTTGGGCA
* *
23957324 TCCGAACGCGTTGAGTTGAGTCCGAGTTCACTTATGGTTGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGTTGCGAACG
*** ** * * *
23957370 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGAT-GTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGTTGCGA-ACG
* * * *
23957417 TCTGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGTTGCGAACG
* *
23957463 -CCCAAGCTCCTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23957500 GCGGGTTACA
Statistics
Matches: 99, Mismatches: 27, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
45 2 0.02
46 65 0.66
47 32 0.32
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGTTGCGAACG
Found at i:23959854 original size:37 final size:37
Alignment explanation
Indices: 23959795--23959940 Score: 256
Period size: 37 Copynumber: 3.9 Consensus size: 37
23959785 AGCTCAGATG
* *
23959795 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
23959832 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
23959869 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
23959906 TAATCTCCACACGTAGTCATCGGGTCTTACACGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
23959941 ATATATTTCC
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:23960142 original size:48 final size:48
Alignment explanation
Indices: 23960087--23960781 Score: 1023
Period size: 48 Copynumber: 14.1 Consensus size: 48
23960077 ACACATCGCC
* **
23960087 TACATATTTCACACTAGCCATTCGGCTTTAGAACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
23960135 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
23960185 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
23960233 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC------A
* * *
23960287 TATATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* *
23960339 TATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
23960387 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
23960437 TATATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
23960487 TATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTGA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
23960535 TACATATTTCACATTAGTCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
23960583 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
23960633 TATATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
23960681 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
23960729 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
23960777 TACAT
1 TACAT
23960782 CAATTTCAGC
Statistics
Matches: 600, Mismatches: 33, Indels: 28
0.91 0.05 0.04
Matches are distributed among these distances:
48 325 0.54
49 2 0.00
50 179 0.30
52 49 0.08
54 45 0.08
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:23960269 original size:146 final size:146
Alignment explanation
Indices: 23960087--23960778 Score: 1134
Period size: 146 Copynumber: 4.7 Consensus size: 146
23960077 ACACATCGCC
* ** *
23960087 TACATATTTCACACTAGCCATTCGGCTTTAGAACATATACATATCTCATACATATTTCACACTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
*
23960152 CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT-GACCATTCGGCTTTAC
66 CCATTCAGCTTTACCACATATACATATCTCATATATATATTTCACATTAG-CCATTCGGCTTTAC
*
23960216 CACATATGCATATCTCA
130 CACATATACATATCTCA
*
23960233 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATATTTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC------ATACATATTTCA
* *
23960298 CATTAACCATTCAGCTTTACCACATATACATATCTCATATATATATATTTCGCATTAGCCATTCG
60 CATTAGCCATTCAGCTTTACCACATATACATATCTC--ATATATATATTTCACATTAGCCATTCG
23960363 GCTTTACCACATATACATATCTCA
123 GCTTTACCACATATACATATCTCA
*
23960387 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATT
* *
23960452 AACCATTCAGCTTTACCACATATACATATCTCATATATATATTTCGCATTAGCCATTCGGCTTTA
64 AGCCATTCAGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGCTTTA
*
23960517 CCACATATACATATCTGA
129 CCACATATACATATCTCA
*
23960535 TACATATTTCACATTAGTCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
*
23960600 CCATTCAGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATTCGGCTTTACC
66 CCATTCAGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGCTTTACC
23960665 ACATATACATATCTCA
131 ACATATACATATCTCA
23960681 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
*
23960746 CCATTCGGCTTTACCACATATACATATCTCATA
66 CCATTCAGCTTTACCACATATACATATCTCATA
23960779 CATCAATTTC
Statistics
Matches: 519, Mismatches: 18, Indels: 18
0.94 0.03 0.03
Matches are distributed among these distances:
146 234 0.45
148 96 0.18
150 50 0.10
152 44 0.08
154 94 0.18
155 1 0.00
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (146 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCAGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGCTTTACC
ACATATACATATCTCA
Found at i:23960788 original size:98 final size:97
Alignment explanation
Indices: 23960087--23960789 Score: 1029
Period size: 98 Copynumber: 7.1 Consensus size: 97
23960077 ACACATCGCC
* ** *
23960087 TACAT-ATTTCACACTAGCCATTCGGCTTTAGAACATATACATATCTCATACATATTTCACACTA
1 TACATAATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTA
23960151 GCCATTCGGCTTTACCACATATACATATCTCA
66 GCCATTCGGCTTTACCACATATACATATCTCA
* *
23960183 TATATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACAT
1 TACATA-ATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
23960247 TAGCCATTCGGCTTTACCACATATACATATCTCATATA
64 TAGCCATTCGGCTTTACCACATATACATATCTC----A
* * * * *
23960285 TATATATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTCATATATATATATTTCG
1 TACATA-ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----ATACATATTTCA
23960350 CATTAGCCATTCGGCTTTACCACATATACATATCTCA
61 CATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
23960387 TACAT-ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACAT
1 TACATAATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACAT
* *
23960451 TAACCATTCAGCTTTACCACATATACATATCTCA
64 TAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
23960485 TATATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTGATACATATTTCACATT
1 TACATA-ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
*
23960550 AGTCATTCGGCTTTACCACATATACATATCTCA
65 AGCCATTCGGCTTTACCACATATACATATCTCA
* *
23960583 TACAT-ATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATATATATATTTCACAT
1 TACATAATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACAT
*
23960647 TAACCATTCGGCTTTACCACATATACATATCTCA
64 TAGCCATTCGGCTTTACCACATATACATATCTCA
23960681 TACAT-ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTA
1 TACATAATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTA
23960745 GCCATTCGGCTTTACCACATATACATATCTCA
66 GCCATTCGGCTTTACCACATATACATATCTCA
23960777 TACATCAATTTCA
1 TACAT-AATTTCA
23960790 GCAATAGCTT
Statistics
Matches: 555, Mismatches: 34, Indels: 34
0.89 0.05 0.05
Matches are distributed among these distances:
96 95 0.17
97 1 0.00
98 282 0.51
100 80 0.14
102 51 0.09
106 46 0.08
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (97 bp):
TACATAATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTA
GCCATTCGGCTTTACCACATATACATATCTCA
Found at i:23964162 original size:16 final size:16
Alignment explanation
Indices: 23964141--23964181 Score: 82
Period size: 16 Copynumber: 2.6 Consensus size: 16
23964131 TCAAATTATC
23964141 GGCACGAAGCCTACTA
1 GGCACGAAGCCTACTA
23964157 GGCACGAAGCCTACTA
1 GGCACGAAGCCTACTA
23964173 GGCACGAAG
1 GGCACGAAG
23964182 GCCTGAATAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.32, C:0.29, G:0.29, T:0.10
Consensus pattern (16 bp):
GGCACGAAGCCTACTA
Found at i:23964590 original size:23 final size:23
Alignment explanation
Indices: 23964559--23964625 Score: 65
Period size: 23 Copynumber: 3.2 Consensus size: 23
23964549 GATACATCAC
23964559 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
* * *
23964582 TAGCCCGAAT-AT-ATC---AC-
1 TAGCACGAATGCTCTTCGGGACT
23964599 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
23964622 TAGC
1 TAGC
23964626 CCGGATATAT
Statistics
Matches: 32, Mismatches: 6, Indels: 12
0.64 0.12 0.24
Matches are distributed among these distances:
17 9 0.28
18 3 0.09
19 2 0.06
21 2 0.06
22 3 0.09
23 13 0.41
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (23 bp):
TAGCACGAATGCTCTTCGGGACT
Found at i:23964635 original size:40 final size:40
Alignment explanation
Indices: 23964208--23964634 Score: 595
Period size: 40 Copynumber: 10.7 Consensus size: 40
23964198 CCAGCATGAT
* * *
23964208 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* *
23964248 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* * *
23964288 TGCTCTTCGGGACTTAGCCCTGATATAACTCTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* * * *
23964328 TGCTCTTTGAGACTTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* * *
23964368 TGCTCTTCGGGACTTAGCCCAGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* *
23964408 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCAGGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* * *
23964448 TGCTCTTCGGGACTTAGCCCTGATATAACTCTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* * *
23964488 TGCTCTAT-GAGACTTAGCCCGGATATAACACCAGCACAAA
1 TGCTCT-TCGGGACTTAGCCCGGATATAACACTAGCACGAA
* *
23964528 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* *
23964568 TGCTCTTCGGGACTTAGCCCGAATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
23964608 TGCTCTTCGGGACTTAGCCCGGATATA
1 TGCTCTTCGGGACTTAGCCCGGATATA
23964635 TATAACTCTC
Statistics
Matches: 341, Mismatches: 44, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
39 1 0.00
40 339 0.99
41 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
Found at i:23965937 original size:37 final size:37
Alignment explanation
Indices: 23965887--23965996 Score: 184
Period size: 37 Copynumber: 3.0 Consensus size: 37
23965877 TAGCTCAGAT
* *
23965887 AAAATCTCCACACGAAGTTATCGGGTCTTACCCGGAC
1 AAAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
*
23965924 AAAATCTCCACACGTAGTCATCAGGTCTTACCCGGAC
1 AAAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
*
23965961 ATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
23965997 ATATATTTCC
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
Found at i:23966197 original size:48 final size:48
Alignment explanation
Indices: 23966143--23966799 Score: 884
Period size: 48 Copynumber: 13.1 Consensus size: 48
23966133 ACACATCGCC
*
23966143 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
23966191 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
23966241 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
23966289 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
23966339 TATATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
23966389 TATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* **
23966437 TACATATTTCACATTAACCATTCAACTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* *
23966489 TATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
23966537 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCAC--AT--ATA---CATATCTCA
*
23966592 TACATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* *
23966644 TATATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
23966692 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCAC--AT--ATA---CATATCTCA
23966747 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
23966795 TACAT
1 TACAT
23966800 CAATTTCAGC
Statistics
Matches: 550, Mismatches: 31, Indels: 56
0.86 0.05 0.09
Matches are distributed among these distances:
48 221 0.40
49 2 0.00
50 139 0.25
51 6 0.01
52 94 0.17
53 4 0.01
55 84 0.15
ACGTcount: A:0.32, C:0.26, G:0.05, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:23966641 original size:155 final size:153
Alignment explanation
Indices: 23966143--23966796 Score: 964
Period size: 155 Copynumber: 4.3 Consensus size: 153
23966133 ACACATCGCC
* *
23966143 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC----ATACATATTTCACA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATTTCACA
* * *
23966204 CTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT-GACCATTCGGCT
66 TTAACCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCACATTAG-CCATTCGGCT
*
23966268 TTA-C-C--ACATATGCATATCTCA
129 TTACCACATACATATTCATATCTCA
23966289 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATATATATATTTCACA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATTTCACA
* * *
23966352 TTAACCATTCAGCTTTACCACATATACATATCTCATATATATATTTCGCATTAGCCATTCGGCTT
66 TTAACCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCACATTAGCCATTCGGCTT
23966417 TACCACAT--ATA--CATATCTCA
130 TACCACATACATATTCATATCTCA
* ** *
23966437 TACATATTTCACATTAACCATTCAACTTTACCACATATACATATCTCATATATATATATTTCGCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATTTCACA
* *
23966502 TTAGCCATTCGGCTTTACCACATATACATATCTC-ATACATATTTCACATTAGCCATTCAGCTTT
66 TTAACCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTAGCCATTCGGCTTT
23966566 ACCACATATACATATCTCATATCTCA
131 ACCAC--ATACATAT-TCATATCTCA
*
23966592 TACATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTCATATATATATATTTCACA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATTTCACA
23966657 TTAACCATTCGGCTTTACCACATATACATATCTC-ATACATATTTCACATTAGCCATTCGGCTTT
66 TTAACCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTAGCCATTCGGCTTT
23966721 ACCACATATACATATCTCATATCTCA
131 ACCAC--ATACATAT-TCATATCTCA
23966747 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
23966797 CATCAATTTC
Statistics
Matches: 471, Mismatches: 21, Indels: 23
0.91 0.04 0.04
Matches are distributed among these distances:
146 46 0.10
148 159 0.34
149 2 0.00
150 53 0.11
152 3 0.01
155 208 0.44
ACGTcount: A:0.32, C:0.26, G:0.05, T:0.36
Consensus pattern (153 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATTTCACA
TTAACCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTAGCCATTCGGCTTT
ACCACATACATATTCATATCTCA
Found at i:23973121 original size:46 final size:45
Alignment explanation
Indices: 23973068--23973243 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 45
23973058 TATTTGGGCA
*
23973068 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACATATGGATGCGAA-G
* * *
23973114 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATAT-AACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC---ACATATGGA-T-GCGAAG
* * *
23973161 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACATATGGATGCGAA-G
* *
23973207 -CCCAAGCTCGTTGAGTTGTGTCCGAGTTCACATATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACATATGG
23973244 GCGGGTTATA
Statistics
Matches: 105, Mismatches: 15, Indels: 20
0.75 0.11 0.14
Matches are distributed among these distances:
43 1 0.01
44 7 0.07
45 4 0.04
46 57 0.54
47 27 0.26
48 1 0.01
49 7 0.07
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACATATGGATGCGAAG
Found at i:23973223 original size:93 final size:93
Alignment explanation
Indices: 23973064--23973235 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
23973054 AGGATATTTG
* *
23973064 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAG
23973129 TTGAGTCCGAGTTCGAGAGATATAACTA
66 TTGAGTCCGAGTTCGAGAGATATAACTA
* *
23973157 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG-CCCAAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAA-CTCGTTGA
*
23973221 GTTGTGTCCGAGTTC
65 GTTGAGTCCGAGTTC
23973236 ACATATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 4 0.05
93 69 0.95
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATATAACTA
Found at i:23977330 original size:26 final size:26
Alignment explanation
Indices: 23977301--23977354 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
23977291 TCAAACATGC
23977301 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGT-AATTTAACACCTAGGGGT
* **
23977327 ATTTTGGTAATTTTGCACCTAGGGGT
1 ATTTAGGTAATTTAACACCTAGGGGT
23977353 AT
1 AT
23977355 AACAGTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.24, C:0.13, G:0.24, T:0.39
Consensus pattern (26 bp):
ATTTAGGTAATTTAACACCTAGGGGT
Found at i:23978869 original size:26 final size:26
Alignment explanation
Indices: 23978838--23978945 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
23978828 TGAAATGCCC
*
23978838 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
23978864 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
23978890 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
23978916 ATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
23978942 ATCA
1 ATCA
23978946 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:23980433 original size:6 final size:6
Alignment explanation
Indices: 23980422--23980448 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
23980412 ACCACTTTTC
23980422 TTCCTT TTCCTT TTCCTT TTCCTT TTC
1 TTCCTT TTCCTT TTCCTT TTCCTT TTC
23980449 TCCACTTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (6 bp):
TTCCTT
Found at i:23980723 original size:13 final size:11
Alignment explanation
Indices: 23980691--23980733 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
23980681 CCATTTTCGA
*
23980691 AATAAAATAAT
1 AATAAAATATT
23980702 AAT-AAATATCT
1 AATAAAATAT-T
23980713 AAGTAAAATATT
1 AA-TAAAATATT
23980725 AATAAAATA
1 AATAAAATA
23980734 ATTTTTAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 5 0.18
11 13 0.46
12 4 0.14
13 6 0.21
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (11 bp):
AATAAAATATT
Found at i:23985214 original size:23 final size:24
Alignment explanation
Indices: 23985159--23985239 Score: 71
Period size: 23 Copynumber: 3.5 Consensus size: 24
23985149 TCAGCTTGTA
* *
23985159 AGAGCTTACT-ATTCTCAACT-AGT
1 AGAGCTTACTGATT-TCAGCTCAAT
**
23985182 ATGAGCTTACTGA-TTCAGCTCGTT
1 A-GAGCTTACTGATTTCAGCTCAAT
*
23985206 AGAGCTTAC-CATTTCAGCTCAAT
1 AGAGCTTACTGATTTCAGCTCAAT
23985229 AGAGCTTACTG
1 AGAGCTTACTG
23985240 TCCATCAGCT
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
22 1 0.02
23 32 0.70
24 12 0.26
25 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.33
Consensus pattern (24 bp):
AGAGCTTACTGATTTCAGCTCAAT
Found at i:23985214 original size:47 final size:49
Alignment explanation
Indices: 23985130--23985239 Score: 120
Period size: 47 Copynumber: 2.3 Consensus size: 49
23985120 ACCACAGCTC
* * *
23985130 GTATGAGCTAACTGATATATCAGCTTGTAAGAGCTTACTATTCTCAACT-A
1 GTATGAGCTTACTGA-ATATCAGCTCGTAAGAGCTTACCATT-TCAACTCA
* *
23985180 GTATGAGCTTACTG-AT-TCAGCTCGTTAGAGCTTACCATTTCAGCTCA
1 GTATGAGCTTACTGAATATCAGCTCGTAAGAGCTTACCATTTCAACTCA
*
23985227 ATA-GAGCTTACTG
1 GTATGAGCTTACTG
23985240 TCCATCAGCT
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
46 15 0.28
47 23 0.43
48 2 0.04
50 13 0.25
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (49 bp):
GTATGAGCTTACTGAATATCAGCTCGTAAGAGCTTACCATTTCAACTCA
Found at i:24004070 original size:42 final size:43
Alignment explanation
Indices: 24004008--24004115 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 43
24003998 AGATTCTGAA
** * * *
24004008 CTTGTTGAGTGGTCAAAGTTCGTGAAATATGTG-GCATCCAAG
1 CTTGTTGAGTGGTCTGAGTTCATGAAAGATGCGAGCATCCAAG
* ** *
24004050 CTTGTTGAGTGGTCTGAGTTCATTATGGATGCGAGCATCCGAG
1 CTTGTTGAGTGGTCTGAGTTCATGAAAGATGCGAGCATCCAAG
24004093 CTTGTTGAGTGGTCTGAGTTCAT
1 CTTGTTGAGTGGTCTGAGTTCAT
24004116 TGTGGATACG
Statistics
Matches: 56, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
42 25 0.45
43 31 0.55
ACGTcount: A:0.20, C:0.15, G:0.31, T:0.34
Consensus pattern (43 bp):
CTTGTTGAGTGGTCTGAGTTCATGAAAGATGCGAGCATCCAAG
Found at i:24004102 original size:43 final size:43
Alignment explanation
Indices: 24004041--24004122 Score: 146
Period size: 43 Copynumber: 1.9 Consensus size: 43
24004031 GAAATATGTG
24004041 GCATCCAAGCTTGTTGAGTGGTCTGAGTTCATTATGGATGCGA
1 GCATCCAAGCTTGTTGAGTGGTCTGAGTTCATTATGGATGCGA
* *
24004084 GCATCCGAGCTTGTTGAGTGGTCTGAGTTCATTGTGGAT
1 GCATCCAAGCTTGTTGAGTGGTCTGAGTTCATTATGGAT
24004123 ACGATACCTG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.18, C:0.16, G:0.32, T:0.34
Consensus pattern (43 bp):
GCATCCAAGCTTGTTGAGTGGTCTGAGTTCATTATGGATGCGA
Found at i:24012900 original size:23 final size:23
Alignment explanation
Indices: 24012851--24012897 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
24012841 TCAGCTAGTC
*
24012851 AGAGCTTACTGTTTCAGCTCAAT
1 AGAGCTTACTGTATCAGCTCAAT
24012874 AGAGCTTACTGTCCATCAGCTCAA
1 AGAGCTTACTGT--ATCAGCTCAA
24012898 GAGGAGTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 12 0.57
25 9 0.43
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.30
Consensus pattern (23 bp):
AGAGCTTACTGTATCAGCTCAAT
Found at i:24013078 original size:19 final size:19
Alignment explanation
Indices: 24013054--24013136 Score: 78
Period size: 19 Copynumber: 4.4 Consensus size: 19
24013044 AAATGTTATG
*
24013054 TGTTATACGGATAAATTAC
1 TGTTATACGGATGAATTAC
* *
24013073 TGTTATATGGATGAAGTAC
1 TGTTATACGGATGAATTAC
* * *
24013092 TATTTTAACGGATGAGTTAC
1 TGTTAT-ACGGATGAATTAC
* *
24013112 TGTTAT-CGAATGATTTAC
1 TGTTATACGGATGAATTAC
24013130 TGTTATA
1 TGTTATA
24013137 TGTACGTTAT
Statistics
Matches: 50, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
18 16 0.32
19 20 0.40
20 14 0.28
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.41
Consensus pattern (19 bp):
TGTTATACGGATGAATTAC
Found at i:24021612 original size:42 final size:42
Alignment explanation
Indices: 24021566--24021658 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 42
24021556 TGTGTCTCAA
* * * *
24021566 CCGTGTGGAGGGCACA-GCCTAGC-ACACGGGCGTGTGTTTTGG
1 CCGTGTGAAGGACACAGGCC-AGCGACACGGGCATGTG-CTTGG
*
24021608 CCGTGTGAAGGACACAGGCCAGCGACATGGGCATGTGCTTGG
1 CCGTGTGAAGGACACAGGCCAGCGACACGGGCATGTGCTTGG
24021650 CCGTGTGAA
1 CCGTGTGAA
24021659 AACCCATGTA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
42 30 0.68
43 14 0.32
ACGTcount: A:0.18, C:0.24, G:0.39, T:0.19
Consensus pattern (42 bp):
CCGTGTGAAGGACACAGGCCAGCGACACGGGCATGTGCTTGG
Found at i:24023915 original size:12 final size:12
Alignment explanation
Indices: 24023898--24023937 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
24023888 AATTTTACTT
24023898 AATTTTATAATA
1 AATTTTATAATA
*
24023910 AATTTT-T-ATT
1 AATTTTATAATA
24023920 AATTTTATAATA
1 AATTTTATAATA
24023932 AATTTT
1 AATTTT
24023938 GATTAATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
10 8 0.33
11 2 0.08
12 14 0.58
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
AATTTTATAATA
Found at i:24023921 original size:22 final size:22
Alignment explanation
Indices: 24023890--24023947 Score: 98
Period size: 22 Copynumber: 2.6 Consensus size: 22
24023880 GTAGTTTGAA
24023890 TTTTACTTAATTTTATAATAAAT
1 TTTTA-TTAATTTTATAATAAAT
24023913 TTTTATTAATTTTATAATAAAT
1 TTTTATTAATTTTATAATAAAT
*
24023935 TTTGATTAATTTT
1 TTTTATTAATTTT
24023948 GATCATTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 29 0.85
23 5 0.15
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (22 bp):
TTTTATTAATTTTATAATAAAT
Found at i:24027699 original size:40 final size:40
Alignment explanation
Indices: 24027644--24027867 Score: 297
Period size: 40 Copynumber: 5.5 Consensus size: 40
24027634 TATTCGGATG
24027644 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
24027684 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
24027727 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
24027767 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
24027807 ATATCCGGGCTAAGACCCGAAGGCATTTGCGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
24027847 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
24027868 ATACTTGGGT
Statistics
Matches: 164, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
39 13 0.08
40 113 0.69
41 1 0.01
43 37 0.23
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:24027787 original size:83 final size:80
Alignment explanation
Indices: 24027648--24027867 Score: 293
Period size: 83 Copynumber: 2.7 Consensus size: 80
24027638 CGGATGATAT
* **
24027648 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
24027713 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
*
24027731 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
24027796 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * * *
24027811 CCGGGCTAAGACCCGAAGGCATTTGCGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
24027868 ATACTTGGGT
Statistics
Matches: 126, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
79 16 0.13
80 44 0.35
81 2 0.02
83 64 0.51
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:24030590 original size:27 final size:27
Alignment explanation
Indices: 24030560--24030820 Score: 360
Period size: 27 Copynumber: 9.7 Consensus size: 27
24030550 TTTGTTTACC
24030560 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
24030587 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
24030614 AAATCACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
** **
24030641 AAATTACCAAAATACGATTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
24030668 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
24030695 AAATTACCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
24030722 AAACTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
24030749 AAATTATCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
24030776 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCTTGGTTTGTA
**
24030803 AAATTACTGAAATACCCT
1 AAATTACCAAAATACCCT
24030821 CGACCTGTAA
Statistics
Matches: 202, Mismatches: 32, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 202 1.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:24030830 original size:81 final size:81
Alignment explanation
Indices: 24030560--24030879 Score: 324
Period size: 81 Copynumber: 4.0 Consensus size: 81
24030550 TTTGTTTACC
* * * *
24030560 AAATTACCAAAATACCCTTGGTTTGTAAAATTA-CTAAAATACCCTTGGTTTATAAAATCACCAA
1 AAATTACCAAAATACCCTCGGTTTGTAAAATTATC-AAAATACCCTTAGTTTGTAAAATTACCAA
* *
24030624 AATACCCTTGGTTTGTA
65 AATACCCCTGATTTGTA
** * ** * * *
24030641 AAATTACCAAAATACGATTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCTCGGTTTGTAAAATTATCAAAATACCCTTAGTTTGTAAAATTACCAAA
*
24030706 ATA-CCCTTAGTTTGTA
66 ATACCCCTGA-TTTGTA
*
24030722 AAACTACCAAAATACCC-CTGGTTTGTAAAATTATCAAAATACCCTTAGTTTGTAAAATTACCAA
1 AAATTACCAAAATACCCTC-GGTTTGTAAAATTATCAAAATACCCTTAGTTTGTAAAATTACCAA
*
24030786 AATACCCCTGATTTGTG
65 AATACCCCTGATTTGTA
** *** ** * **
24030803 AAATTACTGAAATACCCTCGACCTGTAAAATTATTGAAAT-CCCTCAACTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCTCGGTTTGTAAAATTATCAAAATACCCTTAGTTTGTAAAATTACCAAA
* *
24030867 GTACCCTTGATTT
66 ATACCCCTGATTT
24030880 ACAGAATTAC
Statistics
Matches: 200, Mismatches: 34, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
80 35 0.17
81 158 0.79
82 7 0.04
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (81 bp):
AAATTACCAAAATACCCTCGGTTTGTAAAATTATCAAAATACCCTTAGTTTGTAAAATTACCAAA
ATACCCCTGATTTGTA
Found at i:24030833 original size:27 final size:27
Alignment explanation
Indices: 24030771--24030927 Score: 110
Period size: 27 Copynumber: 5.9 Consensus size: 27
24030761 TACCCTTAGT
** *
24030771 TTGTAAAATTACCAAAATACCC-CTGAT
1 TTGTAAAATTACTGAAATACCCTC-GAC
*
24030798 TTGTGAAATTACTGAAATACCCTCGAC
1 TTGTAAAATTACTGAAATACCCTCGAC
* * *
24030825 CTGTAAAATTATTGAAAT-CCCTCAAC
1 TTGTAAAATTACTGAAATACCCTCGAC
* *
24030851 TTGTAAAATTAC-CAAAGTACCCTTGA-
1 TTGTAAAATTACTGAAA-TACCCTCGAC
***
24030877 TT-TACAGAATTACTGTTTTACCCTCGA-
1 TTGTA-A-AATTACTGAAATACCCTCGAC
*
24030904 TTGACAAAATTACTGAAATACCCT
1 TTG-TAAAATTACTGAAATACCCT
24030928 TGTAGGGTAG
Statistics
Matches: 100, Mismatches: 22, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
25 5 0.05
26 21 0.21
27 71 0.71
28 2 0.02
29 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.10, T:0.32
Consensus pattern (27 bp):
TTGTAAAATTACTGAAATACCCTCGAC
Found at i:24030855 original size:26 final size:27
Alignment explanation
Indices: 24030744--24030862 Score: 91
Period size: 27 Copynumber: 4.4 Consensus size: 27
24030734 TACCCCTGGT
* * **
24030744 TTGTAAAATTA-TCAAAATACCCTTAGT
1 TTGTAAAATTACT-GAAATACCCTCAAC
** * *
24030771 TTGTAAAATTACCAAAATACCC-CTGAT
1 TTGTAAAATTACTGAAATACCCTC-AAC
* *
24030798 TTGTGAAATTACTGAAATACCCTCGAC
1 TTGTAAAATTACTGAAATACCCTCAAC
* *
24030825 CTGTAAAATTATTGAAAT-CCCTCAAC
1 TTGTAAAATTACTGAAATACCCTCAAC
24030851 TTGTAAAATTAC
1 TTGTAAAATTAC
24030863 CAAAGTACCC
Statistics
Matches: 75, Mismatches: 14, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
26 17 0.23
27 57 0.76
28 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
TTGTAAAATTACTGAAATACCCTCAAC
Found at i:24030913 original size:80 final size:81
Alignment explanation
Indices: 24030771--24030927 Score: 185
Period size: 80 Copynumber: 2.0 Consensus size: 81
24030761 TACCCTTAGT
** *
24030771 TTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACCTGTAAAATTA
1 TTGTAAAATTACCAAAATACCCCTGATTTCAGAAATTACTGAAATACCCTCGACCTGCAAAATTA
*
24030836 TTGAAAT-CCCTCAAC
66 CTGAAATACCCTCAAC
* * *** *
24030851 TTGTAAAATTACCAAAGTACCCTTGATTTACAG-AATTACTGTTTTACCCTCGA-TTGACAAAAT
1 TTGTAAAATTACCAAAATACCCCTGATTT-CAGAAATTACTGAAATACCCTCGACCTG-CAAAAT
24030914 TACTGAAATACCCT
64 TACTGAAATACCCT
24030928 TGTAGGGTAG
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
79 2 0.03
80 57 0.89
81 5 0.08
ACGTcount: A:0.36, C:0.22, G:0.10, T:0.32
Consensus pattern (81 bp):
TTGTAAAATTACCAAAATACCCCTGATTTCAGAAATTACTGAAATACCCTCGACCTGCAAAATTA
CTGAAATACCCTCAAC
Found at i:24030944 original size:27 final size:27
Alignment explanation
Indices: 24030914--24031129 Score: 242
Period size: 27 Copynumber: 8.0 Consensus size: 27
24030904 TTGACAAAAT
24030914 TACTGAAATACCCTTGTAGGGTAGAAA
1 TACTGAAATACCCTTGTAGGGTAGAAA
* *
24030941 TACTAAAATACCCCTGTAGGGTAGAAA
1 TACTGAAATACCCTTGTAGGGTAGAAA
* *
24030968 TACCGAAATACCCTTGTAGGGTAGAAT
1 TACTGAAATACCCTTGTAGGGTAGAAA
* *
24030995 TACTAAAATACCCTTGTATGGTA-AAA
1 TACTGAAATACCCTTGTAGGGTAGAAA
*
24031021 TTACTGAAATACCCTTGCAGGGTAGAAA
1 -TACTGAAATACCCTTGTAGGGTAGAAA
* * * *
24031049 TACCGAAATACCCCTGTGGGGTAGAAT
1 TACTGAAATACCCTTGTAGGGTAGAAA
* *
24031076 TACTGAAATACTCC-TGTAAGGTAGAAT
1 TACTGAAATAC-CCTTGTAGGGTAGAAA
* *
24031103 TA-TCGAGATACCCTTGTGGGGTA-AAA
1 TACT-GAAATACCCTTGTAGGGTAGAAA
24031129 T
1 T
24031130 TACCATTTTA
Statistics
Matches: 159, Mismatches: 25, Indels: 11
0.82 0.13 0.06
Matches are distributed among these distances:
26 8 0.05
27 146 0.92
28 5 0.03
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (27 bp):
TACTGAAATACCCTTGTAGGGTAGAAA
Found at i:24031125 original size:81 final size:81
Alignment explanation
Indices: 24030911--24031129 Score: 291
Period size: 81 Copynumber: 2.7 Consensus size: 81
24030901 CGATTGACAA
* * * *
24030911 AATTACTGAAATACCCTTGTAGGGTAGAAATACTAAAATACCCCTGTAGGGTAGAAATACCGAAA
1 AATTACTGAAATACCCTTGTAAGGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAA
*
24030976 TACCCTTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * * *
24030992 AATTACTAAAATACCCTTGTATGGTAAAATTACTGAAATACCCTTGCAGGGTAGAAATACCGAAA
1 AATTACTGAAATACCCTTGTAAGGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAA
*
24031057 TACCCCTGTGGGGTAG
66 TACCCCTGTAGGGTAG
* *
24031073 AATTACTGAAATACTCC-TGTAAGGTAGAATTA-TCGAGATACCCTTGTGGGGTA-AAAT
1 AATTACTGAAATAC-CCTTGTAAGGTAGAATTACT-GAAATACCCTTGTAGGGTAGAAAT
24031130 TACCATTTTA
Statistics
Matches: 121, Mismatches: 15, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
80 5 0.04
81 114 0.94
82 2 0.02
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (81 bp):
AATTACTGAAATACCCTTGTAAGGTAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCGAAA
TACCCCTGTAGGGTAG
Found at i:24031422 original size:27 final size:26
Alignment explanation
Indices: 24031378--24031428 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
24031368 CTCACTGTAA
*
24031378 TCTGGTGGCCTCGCCACATATATCTAT
1 TCTGGTGACCTCGCCACA-ATATCTAT
* *
24031405 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
24031429 GGCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTAT
Found at i:24031682 original size:6 final size:6
Alignment explanation
Indices: 24031646--24031720 Score: 73
Period size: 6 Copynumber: 12.3 Consensus size: 6
24031636 TTGCATTCAC
* *
24031646 ATTCTG ATTTTG ATTCTG -TTACCTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
24031695 ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
24031721 AATATTTCTT
Statistics
Matches: 56, Mismatches: 8, Indels: 10
0.76 0.11 0.14
Matches are distributed among these distances:
5 3 0.05
6 48 0.86
7 3 0.05
8 2 0.04
ACGTcount: A:0.19, C:0.16, G:0.13, T:0.52
Consensus pattern (6 bp):
ATTCTG
Found at i:24054542 original size:30 final size:30
Alignment explanation
Indices: 24054422--24054631 Score: 151
Period size: 30 Copynumber: 7.1 Consensus size: 30
24054412 TAAAATCACA
* * * *
24054422 ATGGTTGTCACCATCCATTTCCATAGTTTG
1 ATGGTCGTCACCATCCCTTTTCATAATTTG
* * * * *
24054452 ATAGTCG-AAGCTATCCCATTTCATATTTTG
1 ATGGTCGTCA-CCATCCCTTTTCATAATTTG
* * *
24054482 ATGGTCGTCACCATCCTTTTTCGT-AGTTG
1 ATGGTCGTCACCATCCCTTTTCATAATTTG
**
24054511 ATGAACGTCACCATCCCTTTTCATAATTTG
1 ATGGTCGTCACCATCCCTTTTCATAATTTG
* * * * *
24054541 ATAGCCG-AAGCTATCCCTTTTCATAGTTTG
1 ATGGTCGTCA-CCATCCCTTTTCATAATTTG
* * *
24054571 ATGGTCATTACCATCCCTTTTCGT--TGTTG
1 ATGGTCGTCACCATCCCTTTTCATAAT-TTG
*
24054600 ATGGTTGTCACCATCCCTTTTCATAATTTG
1 ATGGTCGTCACCATCCCTTTTCATAATTTG
24054630 AT
1 AT
24054632 AGCTGAAGCT
Statistics
Matches: 135, Mismatches: 37, Indels: 16
0.72 0.20 0.09
Matches are distributed among these distances:
28 1 0.01
29 48 0.36
30 83 0.61
31 3 0.02
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.40
Consensus pattern (30 bp):
ATGGTCGTCACCATCCCTTTTCATAATTTG
Found at i:24054584 original size:89 final size:89
Alignment explanation
Indices: 24054428--24054654 Score: 319
Period size: 89 Copynumber: 2.6 Consensus size: 89
24054418 CACAATGGTT
* * * * * * *
24054428 GTCACCATCCATTTCCATAGTTTGATAGTCGAAGCTATCCCATTTCATATTTTGATGGTCGTCAC
1 GTCACCATCCCTTTTCATAATTTGATAGCCGAAGCTATCCCTTTTCATAGTTTGATGGTCATCAC
*
24054493 CATCCTTTTTCGTAGTTGATGAAC
66 CATCCCTTTTCGTAGTTGATGAAC
*
24054517 GTCACCATCCCTTTTCATAATTTGATAGCCGAAGCTATCCCTTTTCATAGTTTGATGGTCATTAC
1 GTCACCATCCCTTTTCATAATTTGATAGCCGAAGCTATCCCTTTTCATAGTTTGATGGTCATCAC
* ***
24054582 CATCCCTTTTCGTTGTTGATGGTT
66 CATCCCTTTTCGTAGTTGATGAAC
* *
24054606 GTCACCATCCCTTTTCATAATTTGATAGCTGAAGCTATCCATTTTCATA
1 GTCACCATCCCTTTTCATAATTTGATAGCCGAAGCTATCCCTTTTCATA
24054655 ATTCGACAGT
Statistics
Matches: 123, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
89 123 1.00
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.40
Consensus pattern (89 bp):
GTCACCATCCCTTTTCATAATTTGATAGCCGAAGCTATCCCTTTTCATAGTTTGATGGTCATCAC
CATCCCTTTTCGTAGTTGATGAAC
Found at i:24054651 original size:30 final size:30
Alignment explanation
Indices: 24054612--24054714 Score: 136
Period size: 30 Copynumber: 3.4 Consensus size: 30
24054602 GGTTGTCACC
*
24054612 ATCCCTTTTCATAATTTGATAGCTGAAGCT
1 ATCCCTTTTCATAATTTGACAGCTGAAGCT
* *
24054642 ATCCATTTTCATAATTCGACAG-TGAAAGCT
1 ATCCCTTTTCATAATTTGACAGCTG-AAGCT
* **
24054672 ATCCCTTTTCATAATTTGACAACCAAAGCT
1 ATCCCTTTTCATAATTTGACAGCTGAAGCT
24054702 ATCCCTTTTCATA
1 ATCCCTTTTCATA
24054715 TTTCGATAAT
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
29 2 0.03
30 61 0.97
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGACAGCTGAAGCT
Found at i:24054676 original size:89 final size:88
Alignment explanation
Indices: 24054422--24054681 Score: 281
Period size: 89 Copynumber: 2.9 Consensus size: 88
24054412 TAAAATCACA
* * * *
24054422 ATGGTTGTCACCATCCATTTCCATAGTTTGATAG-TCGAAGCTATCCCA-TTTCATATTTTGATG
1 ATGGTTGTCACCATCCCTTTTCATAATTTGATAGCT-GAAGCTAT-CCATTTTCATAATTTGATG
** *
24054485 GTCGTCACCATCCTTTTTCGTAGTTG
64 GT-GAAACCATCCCTTTTCGTAGTTG
*** * * *
24054511 ATGAACGTCACCATCCCTTTTCATAATTTGATAGCCGAAGCTATCCCTTTTCATAGTTTGATGGT
1 ATGGTTGTCACCATCCCTTTTCATAATTTGATAGCTGAAGCTATCCATTTTCATAATTTGATGGT
* * *
24054576 CATTACCATCCCTTTTCGTTGTTG
66 GA-AACCATCCCTTTTCGTAGTTG
* **
24054600 ATGGTTGTCACCATCCCTTTTCATAATTTGATAGCTGAAGCTATCCATTTTCATAATTCGACAGT
1 ATGGTTGTCACCATCCCTTTTCATAATTTGATAGCTGAAGCTATCCATTTTCATAATTTGATGGT
*
24054665 GAAAGCTATCCCTTTTC
66 GAAA-CCATCCCTTTTC
24054682 ATAATTTGAC
Statistics
Matches: 141, Mismatches: 26, Indels: 8
0.81 0.15 0.05
Matches are distributed among these distances:
88 3 0.02
89 138 0.98
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.39
Consensus pattern (88 bp):
ATGGTTGTCACCATCCCTTTTCATAATTTGATAGCTGAAGCTATCCATTTTCATAATTTGATGGT
GAAACCATCCCTTTTCGTAGTTG
Found at i:24056852 original size:45 final size:44
Alignment explanation
Indices: 24056787--24056923 Score: 202
Period size: 45 Copynumber: 3.0 Consensus size: 44
24056777 AATATCGTAC
24056787 AATACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGA
1 AATACTATTCGGGCC-TTGAGCCTAGCAGGCTATGATGCCGGTGA
* *
24056832 AATACTATTCGAGCCATTGAGCCTAGTAGGCTATGATGCCGGTGA
1 AATACTATTCGGGCC-TTGAGCCTAGCAGGCTATGATGCCGGTGA
* * *
24056877 GATACTATTCGGGACTTCGAGCCTAGCAGGCTATAATGCCGGTGA
1 AATACTATTCGGGCCTT-GAGCCTAGCAGGCTATGATGCCGGTGA
24056922 AA
1 AA
24056924 CGATATCGGG
Statistics
Matches: 82, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
44 2 0.02
45 80 0.98
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (44 bp):
AATACTATTCGGGCCTTGAGCCTAGCAGGCTATGATGCCGGTGA
Found at i:24061392 original size:43 final size:43
Alignment explanation
Indices: 24061236--24061393 Score: 180
Period size: 43 Copynumber: 3.7 Consensus size: 43
24061226 ATGTGTTCTT
*
24061236 GTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTAC
1 GTGTAAGACCACGTCTGGGACATTGGCATTGATATGTGATTAC
* * * * * *
24061279 GTGTAAGACCATGTCTGGGATATCGACA-TCATATTTGATT-C
1 GTGTAAGACCACGTCTGGGACATTGGCATTGATATGTGATTAC
* *
24061320 GTGTAAGACC-CTGTCTGGGACAGTGGCATTGATATGTGATTAT
1 GTGTAAGACCAC-GTCTGGGACATTGGCATTGATATGTGATTAC
*
24061363 ATGTAAGACCACGTCTGGGA-AGTTGGCATTG
1 GTGTAAGACCACGTCTGGGACA-TTGGCATTG
24061394 TACGATATGT
Statistics
Matches: 93, Mismatches: 17, Indels: 10
0.77 0.14 0.08
Matches are distributed among these distances:
41 23 0.25
42 20 0.22
43 49 0.53
44 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCACGTCTGGGACATTGGCATTGATATGTGATTAC
Found at i:24063744 original size:133 final size:133
Alignment explanation
Indices: 24063506--24063772 Score: 507
Period size: 133 Copynumber: 2.0 Consensus size: 133
24063496 TAGGGTTATT
*
24063506 TATGCGCTATTCAAGATATATGTGATGGTACGGAGATATTACTGATTATACCAGAATCCAACATT
1 TATGCGCTATTCAAGATATATGTGATGGTACGGAGATATTACTGATTATACCAGAATCCAACAAT
*
24063571 TTTTTGCAGATTACTGAGTTATACTAGTGTGGTGGAGGCATATATTAATACTGATTATATGATGC
66 TTTTTGCAGATTACTGAGTTATACTAGTGTGGTGGAGGCATATATTAATACTAATTATATGATGC
24063636 CTA
131 CTA
24063639 TATGCGCTATTCAAGATATATGTGATGGTACGGAGATATTACTGATTATACCAGAATCCAACAAT
1 TATGCGCTATTCAAGATATATGTGATGGTACGGAGATATTACTGATTATACCAGAATCCAACAAT
*
24063704 TTTTTGCGGATTACTGAGTTATACTAGTGTGGTGGAGGCATATATTAATACTAATTATATGATGC
66 TTTTTGCAGATTACTGAGTTATACTAGTGTGGTGGAGGCATATATTAATACTAATTATATGATGC
24063769 CTA
131 CTA
24063772 T
1 T
24063773 GGGCTGTGCG
Statistics
Matches: 131, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
133 131 1.00
ACGTcount: A:0.31, C:0.13, G:0.20, T:0.36
Consensus pattern (133 bp):
TATGCGCTATTCAAGATATATGTGATGGTACGGAGATATTACTGATTATACCAGAATCCAACAAT
TTTTTGCAGATTACTGAGTTATACTAGTGTGGTGGAGGCATATATTAATACTAATTATATGATGC
CTA
Found at i:24069705 original size:31 final size:31
Alignment explanation
Indices: 24069667--24069729 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
24069657 TGTATATAAG
24069667 TTTGAAATGAACATGTACCTAAGATGTCATA
1 TTTGAAATGAACATGTACCTAAGATGTCATA
24069698 TTTGAAATGAACATGTACCTAAGATGTCATA
1 TTTGAAATGAACATGTACCTAAGATGTCATA
24069729 T
1 T
24069730 GGTAATGTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (31 bp):
TTTGAAATGAACATGTACCTAAGATGTCATA
Found at i:24072862 original size:65 final size:62
Alignment explanation
Indices: 24072786--24072926 Score: 246
Period size: 65 Copynumber: 2.2 Consensus size: 62
24072776 GTAGCAAATT
24072786 AACTAAGTTGGCCTCTAGAGATGACATCCTGGCATGAGCTAAAGTCCACCTTGCATAAAAAAAA
1 AACTAAGTTGGCCTCTAGAGATGACATCCTGGCATGAGCTAAAGTCCACCTTGCAT--AAAAAA
*
24072850 AACCTAAGTTGGCCTCTAGAGATGACATCCTGGCATGAGCTAAGGTCCACCTTGCATAAAAAA
1 AA-CTAAGTTGGCCTCTAGAGATGACATCCTGGCATGAGCTAAAGTCCACCTTGCATAAAAAA
24072913 AACTAAGTTGGCCT
1 AACTAAGTTGGCCT
24072927 TGAGAATGTT
Statistics
Matches: 75, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
62 12 0.16
63 8 0.11
64 2 0.03
65 53 0.71
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.23
Consensus pattern (62 bp):
AACTAAGTTGGCCTCTAGAGATGACATCCTGGCATGAGCTAAAGTCCACCTTGCATAAAAAA
Found at i:24074360 original size:41 final size:42
Alignment explanation
Indices: 24074303--24074423 Score: 138
Period size: 43 Copynumber: 2.9 Consensus size: 42
24074293 TAGGGTTAGT
*
24074303 TGAGATTACGTGTAAGACCATATCT-AGATATGGCATCAATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCAATA
* * *
24074344 TGAGATTTCGTGTAAGACCATAGT-TGGGCTATTGGCATCGATA
1 TGAGATTACGTGTAAGACCATA-TCTGGGATA-TGGCATCAATA
** * *
24074387 TGAGATCCCATGTAAGACCGTATCTGGGATATGGCAT
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCAT
24074424 TGGTATGGTA
Statistics
Matches: 67, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
41 22 0.33
42 11 0.16
43 34 0.51
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCAATA
Found at i:24075935 original size:12 final size:13
Alignment explanation
Indices: 24075918--24075949 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
24075908 ATAGCACATT
24075918 TCAAAAC-ATGCA
1 TCAAAACTATGCA
24075930 TCAAAACTATGCA
1 TCAAAACTATGCA
24075943 -CAAAACT
1 TCAAAACT
24075950 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:24076537 original size:44 final size:43
Alignment explanation
Indices: 24076405--24076551 Score: 147
Period size: 42 Copynumber: 3.4 Consensus size: 43
24076395 CAATGCAGAC
* * **
24076405 GTCCCAGACATGGTCTTACATGT-AATTCAGTATCGATGCCTCT
1 GTCCCAGACATGGTCTTACACGTAAATTCA-AATCGATGCCAAT
* * * *
24076448 GTCCCAGACAAGGTCTTATACG-AAA-ACAGATACGATGCCAAT
1 GTCCCAGACATGGTCTTACACGTAAATTCAAAT-CGATGCCAAT
* *
24076490 GTCCAAGACATGGTCTTACACGTAAATTTCAAATCGATGCCAGT
1 GTCCCAGACATGGTCTTACACGTAAA-TTCAAATCGATGCCAAT
*
24076534 GTCCCAGACACGGTCTTA
1 GTCCCAGACATGGTCTTA
24076552 TACGATAATT
Statistics
Matches: 84, Mismatches: 15, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
41 2 0.02
42 29 0.35
43 24 0.29
44 25 0.30
45 4 0.05
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGTAAATTCAAATCGATGCCAAT
Found at i:24076562 original size:44 final size:42
Alignment explanation
Indices: 24076405--24076561 Score: 145
Period size: 44 Copynumber: 3.6 Consensus size: 42
24076395 CAATGCAGAC
* * **
24076405 GTCCCAGACATGGTCTTACATGTAATTCAGTATCGATGCCTCT
1 GTCCCAGACATGGTCTTACACGTAATTCA-AATCGATGCCAAT
* * ** *
24076448 GTCCCAGACAAGGTCTTATACG-AAAACAGATACGATGCCAAT
1 GTCCCAGACATGGTCTTACACGTAATTCAAAT-CGATGCCAAT
* *
24076490 GTCCAAGACATGGTCTTACACGTAAATTTCAAATCGATGCCAGT
1 GTCCCAGACATGGTCTTACACGT-AA-TTCAAATCGATGCCAAT
* *
24076534 GTCCCAGACACGGTCTTATACGATAATT
1 GTCCCAGACATGGTCTTACACG-TAATT
24076562 TAGATCAATA
Statistics
Matches: 91, Mismatches: 18, Indels: 10
0.76 0.15 0.08
Matches are distributed among these distances:
41 2 0.02
42 31 0.34
43 21 0.23
44 32 0.35
45 5 0.05
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGTAATTCAAATCGATGCCAAT
Found at i:24085698 original size:62 final size:64
Alignment explanation
Indices: 24085626--24085748 Score: 178
Period size: 65 Copynumber: 1.9 Consensus size: 64
24085616 ATACATACTA
* *
24085626 AATTAATTTAATCAA-TTTAGTGA-ATGTATAAGACAGGGTGAAGTAAAAATATTCCTATGCTG
1 AATTAATTTAATCAATTTTAGTGAGAAGTATAAGACAGAGTGAAGTAAAAATATTCCTATGCTG
* * *
24085688 AATTAATTTAATCAATTTTTGTGAGTAAGTATAAGACAGAGTGAAGTAAATATATTTCTAT
1 AATTAATTTAATCAATTTTAGTGAG-AAGTATAAGACAGAGTGAAGTAAAAATATTCCTAT
24085749 AATTTAATCA
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
62 15 0.28
63 7 0.13
65 31 0.58
ACGTcount: A:0.41, C:0.07, G:0.16, T:0.37
Consensus pattern (64 bp):
AATTAATTTAATCAATTTTAGTGAGAAGTATAAGACAGAGTGAAGTAAAAATATTCCTATGCTG
Found at i:24100960 original size:18 final size:20
Alignment explanation
Indices: 24100918--24100954 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
24100908 ATATTTTATG
*
24100918 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATGAGATATAT
24100937 ATTATTTTAATGAGATAT
1 ATTATTTTAATGAGATAT
24100955 TTTATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (20 bp):
ATTATTTTAATGAGATATAT
Found at i:24103185 original size:46 final size:46
Alignment explanation
Indices: 24103119--24103426 Score: 422
Period size: 46 Copynumber: 6.7 Consensus size: 46
24103109 GTGTGCTCTC
*
24103119 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
*
24103165 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
* *
24103211 TGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGC-ACT
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
*
24103256 TGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
*** *** * *
24103302 TGACGGGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAGCG
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
* **
24103348 TGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * *
24103394 TGACA-GAAAATGAGTAAGACCATAGTTGAAAGA
1 TGATATG-AAATGTGTAAGACCATGGTTGAAAGA
24103427 CACTATTGCA
Statistics
Matches: 238, Mismatches: 22, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
45 44 0.18
46 194 0.82
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.21
Consensus pattern (46 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:24103366 original size:137 final size:138
Alignment explanation
Indices: 24103119--24103426 Score: 440
Period size: 137 Copynumber: 2.2 Consensus size: 138
24103109 GTGTGCTCTC
* * * ***
24103119 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAATAAGA
* **
24103184 CCATGGTTGAAAGATACCATGGCAGCATGATATGAAACGTGTAAGACCATGGTTGAAAGATACCA
66 CCATGGTTGAAAGATACCATGGCAGCATGACATGAAACGAATAAGACCATGGTTGAAAGATACCA
*
24103249 TGGC-ACT
131 TGGCAACA
* *
24103256 TGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATAAATAAGA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAATAAGA
* *
24103321 CCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGAATAAGACCATGGTTGAAAGATACCA
66 CCATGGTTGAAAGATACCATGGCAGCATGACATGAAACGAATAAGACCATGGTTGAAAGATACCA
24103386 TGGCAACA
131 TGGCAACA
* * *
24103394 TGACA-GAAAATGAGTAAGACCATAGTTGAAAGA
1 TGATATG-AAATGTGTAAGACCATGGTTGAAAGA
24103427 CACTATTGCA
Statistics
Matches: 151, Mismatches: 18, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
137 122 0.81
138 29 0.19
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.21
Consensus pattern (138 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAATAAGA
CCATGGTTGAAAGATACCATGGCAGCATGACATGAAACGAATAAGACCATGGTTGAAAGATACCA
TGGCAACA
Found at i:24108542 original size:48 final size:47
Alignment explanation
Indices: 24108464--24108689 Score: 172
Period size: 48 Copynumber: 4.7 Consensus size: 47
24108454 TTATATGTGT
* *
24108464 GCCAGTGTAAGACCAAGTCTGGGACATGGCATCTAAGATGTTGTGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-AACATGTTGTGAGA
* * * *
24108512 GCCAATGTAAGACCATGTCTGGGACGTGGCATCAATATTGATATGTG-CA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAACA-TG-T-TGTGAGA
* * ** * **
24108561 -CTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCATATCATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-AACATGTTGTGAGA
* * * **
24108608 GCCAGTGTAAGACCTTGTCTGGGACATGGCATCGGTA-ATG-AGACAAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC--AACATGTTG-TGAGA
* *
24108656 GCTAGCGTAAGACCATGTCTGGGACATGGCATCA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCA
24108690 GCCTCGACAT
Statistics
Matches: 140, Mismatches: 30, Indels: 18
0.74 0.16 0.10
Matches are distributed among these distances:
46 2 0.01
47 5 0.04
48 125 0.89
49 4 0.03
50 4 0.03
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (47 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATGTTGTGAGA
Found at i:24108666 original size:96 final size:96
Alignment explanation
Indices: 24108470--24108737 Score: 254
Period size: 96 Copynumber: 2.8 Consensus size: 96
24108460 GTGTGCCAGT
* **** * **
24108470 GTAAGACCAAGTCTGGGACATGGCATCTAAGATGTTGTGAGAGCCAATGTAAGACCATGTCTGGG
1 GTAAGACCATGTCTGGGACATGGCATCGGCCATATCATGAGAGCCAATGTAAGACCATGTCTGGG
* * * *** *
24108535 ACGTGGCATCAATATTGATATGTGCACTAGT
66 ACATGGCATCAATAATGAGACAAGCACTAGC
* * *
24108566 GTAAGACCATGTTTGGGACATGGCATCGGCCATATCATGAGAGCCAGTGTAAGACCTTGTCTGGG
1 GTAAGACCATGTCTGGGACATGGCATCGGCCATATCATGAGAGCCAATGTAAGACCATGTCTGGG
**
24108631 ACATGGCATCGGTAATGAGACAAG-AGCTAGC
66 ACATGGCATCAATAATGAGACAAGCA-CTAGC
* * * * *
24108662 GTAAGACCATGTCTGGGACATGGCATCAGCC-TCGA-CATGTGAGCCAATATCAGACCATGTTTG
1 GTAAGACCATGTCTGGGACATGGCATCGGCCAT--ATCATGAGAGCCAATGTAAGACCATGTCTG
*
24108725 GAACATGGCATCA
64 GGACATGGCATCA
24108738 GCAATTCACC
Statistics
Matches: 139, Mismatches: 30, Indels: 6
0.79 0.17 0.03
Matches are distributed among these distances:
95 2 0.01
96 136 0.98
97 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (96 bp):
GTAAGACCATGTCTGGGACATGGCATCGGCCATATCATGAGAGCCAATGTAAGACCATGTCTGGG
ACATGGCATCAATAATGAGACAAGCACTAGC
Found at i:24110952 original size:17 final size:17
Alignment explanation
Indices: 24110930--24110971 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
24110920 ATGGGCTAAA
*
24110930 TGGGCCCGATGGGCAGT
1 TGGGCCCAATGGGCAGT
24110947 TGGGCCCAATGGGCAGT
1 TGGGCCCAATGGGCAGT
24110964 TGGGCCCA
1 TGGGCCCA
24110972 TAATAGGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.14, C:0.26, G:0.43, T:0.17
Consensus pattern (17 bp):
TGGGCCCAATGGGCAGT
Found at i:24111085 original size:29 final size:28
Alignment explanation
Indices: 24111044--24111120 Score: 91
Period size: 29 Copynumber: 2.7 Consensus size: 28
24111034 AATGTGACTG
* * *
24111044 GGCCTAACGGGCCATATAAATGTGATTT
1 GGCCTAATGGGCCATATAAATATGATTA
*
24111072 GTGCCTAATGGGCCATATGAATATGATTA
1 G-GCCTAATGGGCCATATAAATATGATTA
* *
24111101 GGCTTAATGGGCCACATAAA
1 GGCCTAATGGGCCATATAAA
24111121 GGTATGTGAA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
28 17 0.41
29 24 0.59
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (28 bp):
GGCCTAATGGGCCATATAAATATGATTA
Found at i:24114964 original size:24 final size:24
Alignment explanation
Indices: 24114918--24114972 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
24114908 ATCGACAAAA
* *
24114918 GCCGAAATGCCGCAATGACGAAAT
1 GCCGAAATGCCGAAAAGACGAAAT
* *
24114942 GCCGAAATGCTGAAAAGATGAAAT
1 GCCGAAATGCCGAAAAGACGAAAT
*
24114966 GTCGAAA
1 GCCGAAA
24114973 AGCCTAAAGT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.42, C:0.18, G:0.25, T:0.15
Consensus pattern (24 bp):
GCCGAAATGCCGAAAAGACGAAAT
Found at i:24114972 original size:8 final size:8
Alignment explanation
Indices: 24114918--24114956 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
24114908 ATCGACAAAA
24114918 GCCGAAAT
1 GCCGAAAT
*
24114926 GCCGCAAT
1 GCCGAAAT
*
24114934 GACGAAAT
1 GCCGAAAT
24114942 GCCGAAAT
1 GCCGAAAT
*
24114950 GCTGAAA
1 GCCGAAA
24114957 AGATGAAATG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.38, C:0.23, G:0.26, T:0.13
Consensus pattern (8 bp):
GCCGAAAT
Found at i:24115248 original size:29 final size:28
Alignment explanation
Indices: 24115191--24115305 Score: 131
Period size: 29 Copynumber: 4.0 Consensus size: 28
24115181 GTGAGCATAA
* * *
24115191 ATATAAATGTGACTGGGCCTAACGAGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
24115219 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
24115248 ATATACAGGTGATTTGGGCCTGATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
24115277 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
24115305 A
1 A
24115306 AATACAGGTA
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 27 0.36
29 47 0.64
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Done.