Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 77 of 362
Found at i:24116377 original size:21 final size:22
Alignment explanation
Indices: 24116339--24116386 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
24116329 GATATTAAGG
* * *
24116339 AGTTTGTTTTTTTGTTAATTAA
1 AGTTTCTTTTATTGTTAAGTAA
*
24116361 AGTTTCTTTTATT-TTAAGTAG
1 AGTTTCTTTTATTGTTAAGTAA
24116382 AGTTT
1 AGTTT
24116387 TCAATGAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.23, C:0.02, G:0.15, T:0.60
Consensus pattern (22 bp):
AGTTTCTTTTATTGTTAAGTAA
Found at i:24121781 original size:14 final size:15
Alignment explanation
Indices: 24121754--24121782 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
24121744 AATTTTATGA
24121754 ATTTCATGATGTGTT
1 ATTTCATGATGTGTT
24121769 ATTTCAT-ATGTGTT
1 ATTTCATGATGTGTT
24121783 GATGATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.21, C:0.07, G:0.17, T:0.55
Consensus pattern (15 bp):
ATTTCATGATGTGTT
Found at i:24121975 original size:50 final size:51
Alignment explanation
Indices: 24121898--24122026 Score: 190
Period size: 50 Copynumber: 2.5 Consensus size: 51
24121888 GACCATGGCA
24121898 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAA-TG
* *
24121949 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAATGATAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAATG
* * *
24121999 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
24122027 CTGATCAGTG
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
50 44 0.62
51 27 0.38
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAATG
Found at i:24122040 original size:31 final size:31
Alignment explanation
Indices: 24122002--24122181 Score: 272
Period size: 31 Copynumber: 5.8 Consensus size: 31
24121992 ATAAATGACA
24122002 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
*
24122033 AGTGAAAAGTGGTAGCTTCCGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
24122064 AGTGAAAAGTGGTAG-TTCCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CAGCTACCTGATC
* *
24122095 AGTGAAAAGTGGTAGGTCCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
* * *
24122126 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
* *
24122157 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCAGCTAC
24122182 AAGTGACAAG
Statistics
Matches: 138, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
30 2 0.01
31 135 0.98
32 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
Found at i:24122276 original size:47 final size:48
Alignment explanation
Indices: 24122207--24122329 Score: 162
Period size: 47 Copynumber: 2.6 Consensus size: 48
24122197 AGTGATTTTC
* *
24122207 GTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTAC-T
1 GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATACAT
* * *
24122254 GTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATTCAT
1 GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATACAT
* *
24122302 G--TAAGACCATAGCTGGGCTATGGCATCG
1 GTATAAGACCATATCTGGGATATGGCATCG
24122330 ATATATGAAT
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
46 24 0.36
47 41 0.61
48 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.29
Consensus pattern (48 bp):
GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATACAT
Found at i:24122408 original size:42 final size:42
Alignment explanation
Indices: 24122301--24122414 Score: 142
Period size: 42 Copynumber: 2.7 Consensus size: 42
24122291 ATGTGATTCA
* *
24122301 TGTAAGACCATAGCTGGGCTATGGCATCGATATATGAATATG
1 TGTAAGACCATAGCTGAGCTATGGCATCGATATATGAAGATG
* *
24122343 TGTAAGACCATAGCT-AGGTTATGGCATC-ATTATGTGAAGATG
1 TGTAAGACCATAGCTGA-GCTATGGCATCGA-TATATGAAGATG
* *
24122385 TGTAAGACCATAGTTGAACTATGGCATCGA
1 TGTAAGACCATAGCTGAGCTATGGCATCGA
24122415 GAAAACGAAG
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
41 1 0.02
42 58 0.95
43 2 0.03
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATAGCTGAGCTATGGCATCGATATATGAAGATG
Found at i:24129324 original size:50 final size:49
Alignment explanation
Indices: 24129208--24129535 Score: 280
Period size: 50 Copynumber: 6.5 Consensus size: 49
24129198 TTAGGTCCTG
* * * * * * * *
24129208 TGTGTAGCACTAATTGCAGGCTACTATGTGTACCCGATAGTTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAGAT-GGTTAGGTCACA
* *
24129259 TGTATAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTAGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAGATGGTTAGGTCACA
* * * *
24129309 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGAAT-TTATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACAG-ATGGT-TAGGTCACA
* * * ** ** * * *
24129359 TGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCATTAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACAGA-T-GGTTAGGTCACA
* * * * *
24129410 TATGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGATAAGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAGATGGTTAGGTCACA
* * *
24129460 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-AGATGGTTAGGTCACA
24129510 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
24129536 TGCATACCAG
Statistics
Matches: 224, Mismatches: 46, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
49 5 0.02
50 152 0.68
51 64 0.29
52 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACAGATGGTTAGGTCACA
Found at i:24129340 original size:101 final size:98
Alignment explanation
Indices: 24129208--24129535 Score: 307
Period size: 101 Copynumber: 3.3 Consensus size: 98
24129198 TTAGGTCCTG
* * * * *
24129208 TGTGTAGCACTAATTGCAGGCTACTATGTGTACCCGATAGTTTCGATCACGTGTATAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCGATAGTTTAG-TCACGTGTGTAGTACTAAG
* *
24129273 TGCAGGCTACTACATGTATCAGATGGTTAGGTCACA
64 TGCAGGCTACTACGTGTA-CAGATAGTTAGGTCACA
* * * *
24129309 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGA-ATTTATAGGTCGCATGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGATAGTT-TA-GTCACGTGTGTAGTACTAAG
* * * ** * * * *
24129373 TGCAAGCTACTATGCGTACCCATTAACTTCGATCACG
64 TGCAGGCTACTACGTGTACAGA-T-AGTTAGGTCACA
* * * * * *
24129410 TATGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGATAAGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCGATAGTTTAGTCACGTGTGTAGTACTAAGT
* * *
24129475 GCAGGCTACTACGTGTACTAGATTGATAGGTCGCA
65 GCAGGCTACTACGTGTAC-AGATAGTTAGGTCACA
24129510 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
24129536 TGCATACCAG
Statistics
Matches: 178, Mismatches: 42, Indels: 15
0.76 0.18 0.06
Matches are distributed among these distances:
99 5 0.03
100 65 0.37
101 102 0.57
102 5 0.03
103 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (98 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGATAGTTTAGTCACGTGTGTAGTACTAAGTG
CAGGCTACTACGTGTACAGATAGTTAGGTCACA
Found at i:24129431 original size:151 final size:151
Alignment explanation
Indices: 24129208--24129543 Score: 487
Period size: 151 Copynumber: 2.2 Consensus size: 151
24129198 TTAGGTCCTG
* * * ** *
24129208 TGTGTAGCACTAATTGCAGGCTACTATGTGTACCCGATAGTTTCGATCACGTGTATAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTATATAGTACTAAG
* * *
24129273 TGCAGGCTACTACATGTATCAGATGGTTAGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGT
66 TGCAGGCTACTACATGTATCAGATGGATAAGTCACATGTGTAGTACTAAGTGCAGGCTACTACGT
*
24129338 GTACCGA-ATTTATAGGTCGCA
131 GTA-CGAGATTGATAGGTCGCA
* *
24129359 TGTGTAGTACTAAGTGCAAGCTACTATGCGTACCC-ATTAACTTCGATCACGTATGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGA-TAACTTCGATCACGTATATAGTACTAA
* * *
24129423 GTGTAGGCTACTACGTGTATCAGATGGATAAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACG
65 GTGCAGGCTACTACATGTATCAGATGGATAAGTCACATGTGTAGTACTAAGTGCAGGCTACTACG
*
24129488 TGTACTAGATTGATAGGTCGCA
130 TGTACGAGATTGATAGGTCGCA
*
24129510 TGTGTAGTACTAAGTGCAGGCTACTATGCATACC
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
24129544 AGAGAGCTTT
Statistics
Matches: 165, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
150 3 0.02
151 162 0.98
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (151 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTATATAGTACTAAG
TGCAGGCTACTACATGTATCAGATGGATAAGTCACATGTGTAGTACTAAGTGCAGGCTACTACGT
GTACGAGATTGATAGGTCGCA
Found at i:24129770 original size:16 final size:16
Alignment explanation
Indices: 24129749--24129780 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
24129739 ATGGAGTAAG
24129749 TGAAATTATGTAAAAA
1 TGAAATTATGTAAAAA
*
24129765 TGAAATTTTGTAAAAA
1 TGAAATTATGTAAAAA
24129781 AACAGTTTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.12, T:0.34
Consensus pattern (16 bp):
TGAAATTATGTAAAAA
Found at i:24130423 original size:180 final size:179
Alignment explanation
Indices: 24130104--24130454 Score: 524
Period size: 180 Copynumber: 2.0 Consensus size: 179
24130094 TCCGAGATCT
* * *
24130104 GTACCATGAGATAAATATTTTTTAGTGAAGAAAGATCGGAACTGTCAGACAGTGAAATAGGGTAT
1 GTACCATGAGATAAATAATTTTTAGTGAAGAAAGATCGGAACTATCAGACAGTGAAATAGGGTAA
* * * *
24130169 ATTTAATGAATAAATTGTACTAATTGGATATACAAAAAATTTTTAAAATTTTATTATAACAATAT
66 ATTTAATGAATAAACTGTACTAATTGGATAAACAAAAAATTCTAAAAATTTTATTATAACAATAT
* *
24130234 ATATGAGTCTAGTTTCTGGGAAAATTAGCGGTTCTTAATTTGGATTCTC
131 ATATGAGTCTAGTTTCTGGGAAAATTAACGGATCTTAATTTGGATTCTC
* * * **
24130283 GTACTATGAGATAAATAATTTTTAGTGAAGAGAGGTCGGAACTATTGGACAGTGAAATAGGGGTA
1 GTACCATGAGATAAATAATTTTTAGTGAAGAAAGATCGGAACTATCAGACAGTGAAATA-GGGTA
* *
24130348 AATTTAATGAATAAACTGTACTAATTGGCTAAACAAAAAATTCTAAAAATTTT-TTAGTAAGAAT
65 AATTTAATGAATAAACTGTACTAATTGGATAAACAAAAAATTCTAAAAATTTTATTA-TAACAAT
*
24130412 ATATGTGAGTCTAGTTTCTGGGAAAATTAACGGATCTTAATTT
129 ATATATGAGTCTAGTTTCTGGGAAAATTAACGGATCTTAATTT
24130455 TGAGTTCTGT
Statistics
Matches: 153, Mismatches: 17, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
179 55 0.36
180 98 0.64
ACGTcount: A:0.39, C:0.08, G:0.19, T:0.35
Consensus pattern (179 bp):
GTACCATGAGATAAATAATTTTTAGTGAAGAAAGATCGGAACTATCAGACAGTGAAATAGGGTAA
ATTTAATGAATAAACTGTACTAATTGGATAAACAAAAAATTCTAAAAATTTTATTATAACAATAT
ATATGAGTCTAGTTTCTGGGAAAATTAACGGATCTTAATTTGGATTCTC
Found at i:24133730 original size:42 final size:42
Alignment explanation
Indices: 24133683--24133800 Score: 112
Period size: 42 Copynumber: 2.8 Consensus size: 42
24133673 TATCGTTTCA
* ** *
24133683 ATGCCATATCC-CTGATATGGTCTTACATGAAATGTCATATCG
1 ATGCCATATCCTC-GATATGGTCTTACACGAAATCACATACCG
* * * *
24133725 ATGCCATGTCCTCGACATGGTCTTATACGAAGTCACATACCG
1 ATGCCATATCCTCGATATGGTCTTACACGAAATCACATACCG
* * * *
24133767 AGGCCATATCCTGGATATGGTCTTATACGGAATC
1 ATGCCATATCCTCGATATGGTCTTACACGAAATC
24133801 TTAATAACCT
Statistics
Matches: 61, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
42 60 0.98
43 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCTCGATATGGTCTTACACGAAATCACATACCG
Found at i:24139997 original size:13 final size:13
Alignment explanation
Indices: 24139979--24140005 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
24139969 TGATAAGTGG
24139979 AATATAAATTGTA
1 AATATAAATTGTA
24139992 AATATAAATTGTA
1 AATATAAATTGTA
24140005 A
1 A
24140006 GTATTTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (13 bp):
AATATAAATTGTA
Found at i:24166542 original size:46 final size:45
Alignment explanation
Indices: 24166474--24166607 Score: 155
Period size: 46 Copynumber: 2.9 Consensus size: 45
24166464 TATATCCCGA
* * *
24166474 GGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAA-T
1 GGCCGATGCATGTCCTAAACATGTCTTACACTGGCTCTC--AT-AAGT
*
24166521 -GCCGATGCATGTCCTATACATGTCTTACACTGGCTCTCATAATGT
1 GGCCGATGCATGTCCTAAACATGTCTTACACTGGCTCTCATAA-GT
* * *
24166566 GGCCGATGCATATCCTAGACATGTCTTACACTGGCTCACATA
1 GGCCGATGCATGTCCTAAACATGTCTTACACTGGCTCTCATA
24166608 CCACCCAATG
Statistics
Matches: 77, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
43 2 0.03
44 1 0.01
45 1 0.01
46 73 0.95
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (45 bp):
GGCCGATGCATGTCCTAAACATGTCTTACACTGGCTCTCATAAGT
Found at i:24175712 original size:49 final size:49
Alignment explanation
Indices: 24175448--24175805 Score: 162
Period size: 46 Copynumber: 7.6 Consensus size: 49
24175438 GTGGTATGTG
* * * *
24175448 AGCCAGTGTAAGACATGTCTGGGACAT-GCATCGACC---AAAACATGAG
1 AGCCAGTGTAAGACCTATCTGGGACATGGCATCGACCTTGATAA-ATGAA
* * * * * * * * *
24175494 TGCCGGTGTAAGACATGTCTAGAACAT-GCATCGACGTTG--AGATGAG
1 AGCCAGTGTAAGACCTATCTGGGACATGGCATCGACCTTGATAAATGAA
* * * * *
24175540 AGCTAGTGTAAGACATGTTTGGGACAT-GCATCGACCTCAGGAT--AT-ACA
1 AGCCAGTGTAAGACCTATCTGGGACATGGCATCGACCT--TGATAAATGA-A
* * * * *
24175588 AGCTAGTGTAAGACCTATCTGGGACATGGCTTC-AGCTTG-T-TA-G-G
1 AGCCAGTGTAAGACCTATCTGGGACATGGCATCGACCTTGATAAATGAA
* * * *
24175632 TGTCAGTTTAAGACCTATCTGGGACATGGCATCGACAC-TGATAAATGAG
1 AGCCAGTGTAAGACCTATCTGGGACATGGCATCGAC-CTTGATAAATGAA
* * * *
24175681 AGCCAGTGTAAGACCTATCTAGGACATGGCATTGGCCTTGATATATGAA
1 AGCCAGTGTAAGACCTATCTGGGACATGGCATCGACCTTGATAAATGAA
** * * * **
24175730 AGTTAGTGTAAGACCTGTCTGGGACACGGCATCGA-CTT--TAATGTGCT
1 AGCCAGTGTAAGACCTATCTGGGACATGGCATCGACCTTGATAA-ATGAA
*
24175777 AGCCAGTGTAAGACCATGTCTGGGACATG
1 AGCCAGTGTAAGACC-TATCTGGGACATG
24175806 ACGTCGATAT
Statistics
Matches: 241, Mismatches: 51, Indels: 38
0.73 0.15 0.12
Matches are distributed among these distances:
44 28 0.12
45 4 0.02
46 72 0.30
47 18 0.07
48 47 0.20
49 72 0.30
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (49 bp):
AGCCAGTGTAAGACCTATCTGGGACATGGCATCGACCTTGATAAATGAA
Found at i:24177019 original size:21 final size:22
Alignment explanation
Indices: 24176980--24177020 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
24176970 TTGAATTGGT
24176980 CACACGGGCGTGCTGCCCCTCC
1 CACACGGGCGTGCTGCCCCTCC
24177002 CACACGGGCGTG-TGCCCCT
1 CACACGGGCGTGCTGCCCCT
24177021 GTAGCTAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.10, C:0.46, G:0.29, T:0.15
Consensus pattern (22 bp):
CACACGGGCGTGCTGCCCCTCC
Found at i:24184197 original size:44 final size:44
Alignment explanation
Indices: 24184103--24184197 Score: 145
Period size: 44 Copynumber: 2.2 Consensus size: 44
24184093 CACTAGGAAT
* * * *
24184103 TATGAAATCTGAACTCATTGAGTTGTGTCTGAGTTCATGATATT
1 TATGACATCCGAAATCATTGAGTTGTGTCTGAGTTCATGATATG
*
24184147 TTTGACATCCGAAATCATTGAGTTGTGTCTGAGTTCATGATATG
1 TATGACATCCGAAATCATTGAGTTGTGTCTGAGTTCATGATATG
24184191 TATGACA
1 TATGACA
24184198 CATGTTTTGG
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.39
Consensus pattern (44 bp):
TATGACATCCGAAATCATTGAGTTGTGTCTGAGTTCATGATATG
Found at i:24190116 original size:20 final size:18
Alignment explanation
Indices: 24190082--24190118 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
24190072 CCTTAGCCTA
24190082 TAACAGTATCAGTAGCAG
1 TAACAGTATCAGTAGCAG
24190100 TAACAGTTATGCAGTAGCA
1 TAACAG-TAT-CAGTAGCA
24190119 AAATCCTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 3 0.18
20 8 0.47
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (18 bp):
TAACAGTATCAGTAGCAG
Found at i:24199523 original size:3 final size:3
Alignment explanation
Indices: 24199515--24199539 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
24199505 ATACATATAC
24199515 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
24199540 GTTTTAAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:24202196 original size:18 final size:19
Alignment explanation
Indices: 24202173--24202212 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
24202163 TAATACCTAT
* *
24202173 TAATATTAACA-TTACAAA
1 TAATATAAACAGTAACAAA
24202191 TAATATAAACAGTAACAAA
1 TAATATAAACAGTAACAAA
24202210 TAA
1 TAA
24202213 AAGTGAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.60, C:0.10, G:0.03, T:0.28
Consensus pattern (19 bp):
TAATATAAACAGTAACAAA
Found at i:24204942 original size:156 final size:159
Alignment explanation
Indices: 24204704--24205073 Score: 497
Period size: 156 Copynumber: 2.4 Consensus size: 159
24204694 ACAGTAGGGC
* * * * * *
24204704 ACGATTCTTCGAATTTCTAAACTTCGAACATTGCC-TCATTTT--AGAA--TTTAGAGAACATGA
1 ACGATTCCTCGAATTGCCAAACATCGAACATTACCTTCATTTTGAAGAATTTTTAAAG-ACATGA
* * *
24204764 GTGAAATTCTAAAGGGATATTCGATTATTTTGAATAAACGGGAAATTGCAACCCAGCACGATAGG
65 GTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGGAAATTGCAACCCAGCACGATAGG
* *
24204829 GCATGATTCCCCGAATTGCCAAACA-G-C-
130 GCACGATTCCCCAAATTGCCAAACACGACA
*
24204856 ACGATTTCC-CGAATTGCCAAACATCGAACATTACCTTCGTTTTGAAGAATTTTTAAAGACATGA
1 ACGA-TTCCTCGAATTGCCAAACATCGAACATTACCTTCATTTTGAAGAATTTTTAAAGACATGA
*
24204920 GTGAAATTCCAAAGGAATATTCGATTGTTTTGAACAAACGGGAAATTGCAACCCAGCACGATAGG
65 GTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGGAAATTGCAACCCAGCACGATAGG
*
24204985 GCACGATTCTCCAAATTGCCAAACATCGAACA
130 GCACGATTCCCCAAATTGCCAAACA-CG-ACA
* *
24205017 ACGATTCCTCGAATTGCCAAACATCGAACATTGCCTTCATTTTTAAGAATTTTTAAA
1 ACGATTCCTCGAATTGCCAAACATCGAACATTACCTTCATTTTGAAGAATTTTTAAA
24205074 TGAATAATTA
Statistics
Matches: 189, Mismatches: 17, Indels: 15
0.86 0.08 0.07
Matches are distributed among these distances:
152 26 0.14
153 9 0.05
155 4 0.02
156 89 0.47
157 6 0.03
158 1 0.01
160 5 0.03
161 49 0.26
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (159 bp):
ACGATTCCTCGAATTGCCAAACATCGAACATTACCTTCATTTTGAAGAATTTTTAAAGACATGAG
TGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGGAAATTGCAACCCAGCACGATAGGG
CACGATTCCCCAAATTGCCAAACACGACA
Found at i:24205023 original size:30 final size:30
Alignment explanation
Indices: 24204987--24205046 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
24204977 ACGATAGGGC
24204987 ACGATT-CTCCAAATTGCCAAACATCGAACA
1 ACGATTCCT-CAAATTGCCAAACATCGAACA
*
24205017 ACGATTCCTCGAATTGCCAAACATCGAACA
1 ACGATTCCTCAAATTGCCAAACATCGAACA
24205047 TTGCCTTCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 26 0.93
31 2 0.07
ACGTcount: A:0.38, C:0.30, G:0.12, T:0.20
Consensus pattern (30 bp):
ACGATTCCTCAAATTGCCAAACATCGAACA
Found at i:24207418 original size:12 final size:12
Alignment explanation
Indices: 24207403--24207442 Score: 55
Period size: 12 Copynumber: 3.2 Consensus size: 12
24207393 AATTGGACTT
24207403 TTTATTATTTAG
1 TTTATTATTTAG
24207415 TTTATTTATTTA-
1 TTTA-TTATTTAG
24207427 TTTATTATTTTAG
1 TTTATTA-TTTAG
24207440 TTT
1 TTT
24207443 TGATTTTCTG
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 3 0.12
12 12 0.48
13 10 0.40
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (12 bp):
TTTATTATTTAG
Found at i:24214839 original size:19 final size:20
Alignment explanation
Indices: 24214810--24214854 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
24214800 GTCAATTTAT
*
24214810 AAAAA-GAAAATGAAAGAAA
1 AAAAATGAAATTGAAAGAAA
* *
24214829 AAAAATGAAATTTATAGAAA
1 AAAAATGAAATTGAAAGAAA
24214849 AAAAAT
1 AAAAAT
24214855 CGTATAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.73, C:0.00, G:0.11, T:0.16
Consensus pattern (20 bp):
AAAAATGAAATTGAAAGAAA
Found at i:24216091 original size:15 final size:17
Alignment explanation
Indices: 24216071--24216103 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
24216061 TTATTTAATA
24216071 TTTAAAA-TAT-TATTT
1 TTTAAAAGTATATATTT
24216086 TTTAAAAGTATATATTT
1 TTTAAAAGTATATATTT
24216103 T
1 T
24216104 CATAATTAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 3 0.19
17 6 0.38
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (17 bp):
TTTAAAAGTATATATTT
Found at i:24218774 original size:16 final size:18
Alignment explanation
Indices: 24218746--24218782 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
24218736 ATCCACACCC
24218746 TTTAAAAATATAA-ATTT
1 TTTAAAAATATAATATTT
24218763 TTTAAAAA-ATAATATTT
1 TTTAAAAATATAATATTT
24218780 TTT
1 TTT
24218783 TCTTATTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTAAAAATATAATATTT
Found at i:24219050 original size:20 final size:21
Alignment explanation
Indices: 24219027--24219066 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
24219017 TCTGGTAAGT
24219027 TTAGGG-TTAGGGTTTTAAAA
1 TTAGGGTTTAGGGTTTTAAAA
24219047 TTAGGGTTTAGGGTTTTAAA
1 TTAGGGTTTAGGGTTTTAAA
24219067 TTTTAAATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.28, C:0.00, G:0.30, T:0.42
Consensus pattern (21 bp):
TTAGGGTTTAGGGTTTTAAAA
Found at i:24219366 original size:32 final size:32
Alignment explanation
Indices: 24219325--24219440 Score: 178
Period size: 32 Copynumber: 3.6 Consensus size: 32
24219315 TAAACGCGCG
* * *
24219325 ATTTTGTGAAATGATAACAAATATTATCTTTT
1 ATTTTGTGAAATGATAACAAATATCAACTTTA
*
24219357 ATTTTGTGAAATGCTAACAAATATCAACTTTA
1 ATTTTGTGAAATGATAACAAATATCAACTTTA
24219389 ATTTTGTGAAATGATAACAAATATCAACTTTA
1 ATTTTGTGAAATGATAACAAATATCAACTTTA
* *
24219421 AATTTGTTAAATGATAACAA
1 ATTTTGTGAAATGATAACAA
24219441 TTTTCCTCTA
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 77 1.00
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (32 bp):
ATTTTGTGAAATGATAACAAATATCAACTTTA
Found at i:24228554 original size:44 final size:46
Alignment explanation
Indices: 24228503--24228632 Score: 151
Period size: 44 Copynumber: 2.8 Consensus size: 46
24228493 CACATATATG
24228503 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCACATC-TCGT-A
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCACATCGTC-TAA
* * * *
24228548 -GGCGATGCATGTCCTAGACATCTCTTACACTAGCTC-TCGTCTCAA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCACATCGTCT-AA
*
24228593 TGCCGATGCCATGTCTCAGACATGGTCTTACACTAGCACA
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACA
24228633 CACACATCGC
Statistics
Matches: 69, Mismatches: 9, Indels: 10
0.78 0.10 0.11
Matches are distributed among these distances:
43 3 0.04
44 34 0.49
45 1 0.01
46 6 0.09
47 12 0.17
48 13 0.19
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (46 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTAGCACATCGTCTAA
Found at i:24232956 original size:48 final size:48
Alignment explanation
Indices: 24232895--24233209 Score: 255
Period size: 48 Copynumber: 6.5 Consensus size: 48
24232885 TGTCAGTGCT
* * * *
24232895 GATGCCATATCCCAGACATGGTCTTACACTAGCACACATATCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGCC
* * * *
24232943 GATACTATGTCCCAGACATGGTCTTACACTGGCTCAAATATCAACACC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGCC
*
24232991 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGCC
* * *
24233039 GATGCCATGT-CCAGACATGGTCTTACA-TAGGATCTCATATATCGATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACT-GG--CTCACATATCAACGCC
* * * * * * * * **
24233088 AATTCCCA-GTCCTAGACATGGTCTTATA-TGGGATCTCGTATTAGTGCC
1 GA-TGCCATGTCCCAGACATGGTCTTACACT-GGCTCACATATCAACGCC
* * * * * *
24233136 GATGCCATGTCCCAAACATGGTCTTATA-TGGGAC-CTCATCTCGATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACT-GG-CTCACATATCAACGCC
* *
24233184 GATGCCATATCCCAGATATGGTCTTA
1 GATGCCATGTCCCAGACATGGTCTTA
24233210 TACGGGACCT
Statistics
Matches: 218, Mismatches: 42, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
46 1 0.00
47 23 0.11
48 157 0.72
49 15 0.07
50 22 0.10
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGCC
Found at i:24233210 original size:48 final size:47
Alignment explanation
Indices: 24233103--24233225 Score: 149
Period size: 48 Copynumber: 2.6 Consensus size: 47
24233093 CCAGTCCTAG
* * *
24233103 ACATGGTCTTATATGGGATCTCGTAT-TAGTGCCGATGCCATGTCCCAA
1 ACATGGTCTTATATGGGACCTC--ATCTCGTGCCGATGCCATATCCCAA
*
24233151 ACATGGTCTTATATGGGACCTCATCTCGATGCCGATGCCATATCCCAG
1 ACATGGTCTTATATGGGACCTCATCTCG-TGCCGATGCCATATCCCAA
* * *
24233199 ATATGGTCTTATACGGGACCTTATCTC
1 ACATGGTCTTATATGGGACCTCATCTC
24233226 AAAATTTTGT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
46 2 0.03
47 2 0.03
48 62 0.94
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (47 bp):
ACATGGTCTTATATGGGACCTCATCTCGTGCCGATGCCATATCCCAA
Found at i:24233289 original size:6 final size:6
Alignment explanation
Indices: 24233278--24233307 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
24233268 ATAAAGACAA
24233278 ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT
24233308 TTCATGTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (6 bp):
ATACAT
Found at i:24240805 original size:14 final size:13
Alignment explanation
Indices: 24240786--24240815 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
24240776 TATTTAACTA
24240786 GTTCTTAATTATGT
1 GTTCTTAATTAT-T
24240800 GTTCTTAATTATT
1 GTTCTTAATTATT
24240813 GTT
1 GTT
24240816 TTGATATCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.20, C:0.07, G:0.13, T:0.60
Consensus pattern (13 bp):
GTTCTTAATTATT
Found at i:24250529 original size:14 final size:13
Alignment explanation
Indices: 24250510--24250539 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
24250500 TATTTAACTA
24250510 GTTCTTAATTATGT
1 GTTCTTAATTAT-T
24250524 GTTCTTAATTATT
1 GTTCTTAATTATT
24250537 GTT
1 GTT
24250540 TTGATATCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.20, C:0.07, G:0.13, T:0.60
Consensus pattern (13 bp):
GTTCTTAATTATT
Found at i:24255059 original size:10 final size:10
Alignment explanation
Indices: 24255044--24255069 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
24255034 AAATATCAAC
24255044 CACATATATG
1 CACATATATG
24255054 CACATATATG
1 CACATATATG
24255064 CACATA
1 CACATA
24255070 ACCAAATCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.42, C:0.23, G:0.08, T:0.27
Consensus pattern (10 bp):
CACATATATG
Found at i:24255692 original size:40 final size:40
Alignment explanation
Indices: 24255600--24255724 Score: 137
Period size: 40 Copynumber: 3.1 Consensus size: 40
24255590 GTGCCAAAAC
* *
24255600 ATAGCCAAAGCTAT-TTTAACCTCACACACTAAGTGCCATAC
1 ATAGCCAAAGCTATCTTGAA--TCACACACTAAGTGCCATAT
* * *
24255641 ATTGCCAAAGCTATCTTGAATCACGCACAAAGTGCCATAT
1 ATAGCCAAAGCTATCTTGAATCACACACTAAGTGCCATAT
* * *
24255681 ATAG-CAGAAGCTATGTTGAATCCCACACTAAGTGCCACAT
1 ATAGCCA-AAGCTATCTTGAATCACACACTAAGTGCCATAT
24255721 ATAG
1 ATAG
24255725 GCGATTTTGT
Statistics
Matches: 71, Mismatches: 11, Indels: 5
0.82 0.13 0.06
Matches are distributed among these distances:
39 2 0.03
40 52 0.73
41 13 0.18
42 4 0.06
ACGTcount: A:0.36, C:0.26, G:0.14, T:0.24
Consensus pattern (40 bp):
ATAGCCAAAGCTATCTTGAATCACACACTAAGTGCCATAT
Found at i:24257211 original size:42 final size:41
Alignment explanation
Indices: 24257164--24257242 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 41
24257154 AATACTTAAT
24257164 ATTTTGCACACTAAGTG-CTAATACATAACCGAAGCTATTATA
1 ATTTTGCACACTAAGTGCCT--TACATAACCGAAGCTATTATA
*
24257206 ATTTTGCACACTAAGTGCCTTACATAGCCGAAGCTAT
1 ATTTTGCACACTAAGTGCCTTACATAACCGAAGCTAT
24257243 CTTGGTCTCG
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
41 16 0.46
42 17 0.49
43 2 0.06
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (41 bp):
ATTTTGCACACTAAGTGCCTTACATAACCGAAGCTATTATA
Found at i:24257242 original size:41 final size:40
Alignment explanation
Indices: 24257164--24257321 Score: 147
Period size: 41 Copynumber: 3.9 Consensus size: 40
24257154 AATACTTAAT
* * *
24257164 ATTTTGCACACTAAGTGCTAATACATAACCGAAGCTATTATA
1 ATTTCGCACACTAAGTGC-CATACATAGCCGAAGCTATT-TA
* * *
24257206 ATTTTGCACACTAAGTGCCTTACATAGCCGAAGCTATCTTG
1 ATTTCGCACACTAAGTGCCATACATAGCCGAAGCTAT-TTA
* * * * *
24257247 GTCTCGCACACTAAGCGCCATATATAGCCGAAGCTATTCCA
1 ATTTCGCACACTAAGTGCCATACATAGCCGAAGCTATT-TA
* * *
24257288 A-ATCGCACACTAAGTGCCATATATAGCTGAAGCT
1 ATTTCGCACACTAAGTGCCATACATAGCCGAAGCT
24257322 TTCTTGAATC
Statistics
Matches: 98, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
40 31 0.32
41 48 0.49
42 19 0.19
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (40 bp):
ATTTCGCACACTAAGTGCCATACATAGCCGAAGCTATTTA
Found at i:24257307 original size:40 final size:40
Alignment explanation
Indices: 24257169--24257352 Score: 156
Period size: 40 Copynumber: 4.5 Consensus size: 40
24257159 TTAATATTTT
* * * * * *
24257169 GCACACTAAGTGCTAATACATAACCGAAGCTATTATAATTTT
1 GCACACTAAGTGC-CATATATAGCCGAAGCTATTCTAA-ATC
* * ***
24257211 GCACACTAAGTGCCTTACATAGCCGAAGCTA-TCTTGGTCTC
1 GCACACTAAGTGCCATATATAGCCGAAGCTATTC-T-AAATC
* *
24257252 GCACACTAAGCGCCATATATAGCCGAAGCTATTCCAAATC
1 GCACACTAAGTGCCATATATAGCCGAAGCTATTCTAAATC
* *
24257292 GCACACTAAGTGCCATATATAGCTGAAGCT-TTCTTGAATC
1 GCACACTAAGTGCCATATATAGCCGAAGCTATTC-TAAATC
* *
24257332 GCACACTAATTGCTATATATA
1 GCACACTAAGTGCCATATATA
24257353 TATCTGAATT
Statistics
Matches: 117, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
39 3 0.03
40 54 0.46
41 45 0.38
42 15 0.13
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (40 bp):
GCACACTAAGTGCCATATATAGCCGAAGCTATTCTAAATC
Found at i:24264613 original size:47 final size:47
Alignment explanation
Indices: 24264542--24265281 Score: 1246
Period size: 47 Copynumber: 15.6 Consensus size: 47
24264532 CCCTTCGGGA
* * * * * *
24264542 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
24264589 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24264636 ATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24264683 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24264730 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24264777 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24264826 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24264873 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24264920 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24264967 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24265016 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24265063 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24265110 CTTATCACATATATATACACTTTCACATTAATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24265159 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24265208 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24265255 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
24265282 TATTCAAATA
Statistics
Matches: 661, Mismatches: 26, Indels: 12
0.95 0.04 0.02
Matches are distributed among these distances:
47 479 0.72
49 182 0.28
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24264620 original size:25 final size:25
Alignment explanation
Indices: 24264592--24264670 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
24264582 ACTCGGCCCT
24264592 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * *
24264617 ATCACAT-T-GGC-CATTCGGCATT-
1 ATCACATATATACACTTTC-ACATTC
24264639 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
24264664 ATCACAT
1 ATCACAT
24264671 CGGCCATTAG
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 11 0.27
23 6 0.15
24 6 0.15
25 18 0.44
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:24264849 original size:143 final size:141
Alignment explanation
Indices: 24264542--24265281 Score: 1246
Period size: 143 Copynumber: 5.2 Consensus size: 141
24264532 CCCTTCGGGA
* * * * * * *
24264542 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * *
24264607 TTTCACATTCATCACATTGGCCATTCGGCATTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
24264672 GGCCATTAGGC
131 GGCCATTAGGC
*
24264683 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
24264748 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
* *
24264813 TTGGCCATTCGGC
129 TCGGCCATTAGGC
24264826 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
24264891 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
24264956 GGCCATTAGGC
131 GGCCATTAGGC
* *
24264967 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
24265032 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
24265097 TCGGCCATTAGGC
129 TCGGCCATTAGGC
*
24265110 CTTATCACATATATATACACTTTCACATTAATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
* *
24265175 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
62 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
24265240 CATCGGCCATTAGGC
127 CATCGGCCATTAGGC
24265255 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
24265282 TATTCAAATA
Statistics
Matches: 570, Mismatches: 23, Indels: 10
0.95 0.04 0.02
Matches are distributed among these distances:
141 136 0.24
143 342 0.60
145 92 0.16
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:24264863 original size:190 final size:190
Alignment explanation
Indices: 24264542--24265281 Score: 1358
Period size: 190 Copynumber: 3.9 Consensus size: 190
24264532 CCCTTCGGGA
* * * * * * *
24264542 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
24264605 ACTTTCACATTCATCACATTGGCCATTCGGCATTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
*
24264670 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24264730 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
24264795 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
24264860 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24264920 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
24264985 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
24265050 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24265110 CTTATCACATATATATACACTTTCACATTAATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
24265175 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
64 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
24265240 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
129 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
24265282 TATTCAAATA
Statistics
Matches: 538, Mismatches: 10, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
188 48 0.09
190 329 0.61
192 161 0.30
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (190 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24275277 original size:49 final size:48
Alignment explanation
Indices: 24275217--24275315 Score: 180
Period size: 49 Copynumber: 2.0 Consensus size: 48
24275207 CTTTCCTCAC
*
24275217 ATATTTCTGAGCTAACATCGAAGATATCACTGCTGGCAAACCATTCTAT
1 ATATTTCTGAGCTAACATCGAAGATATCACTACTGGCAAACCATTC-AT
24275266 ATATTTCTGAGCTAACATCGAAGATATCACTACTGGCAAACCATTCAT
1 ATATTTCTGAGCTAACATCGAAGATATCACTACTGGCAAACCATTCAT
24275314 AT
1 AT
24275316 CATTAGATTC
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
48 4 0.08
49 45 0.92
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.30
Consensus pattern (48 bp):
ATATTTCTGAGCTAACATCGAAGATATCACTACTGGCAAACCATTCAT
Found at i:24275292 original size:23 final size:23
Alignment explanation
Indices: 24275217--24275292 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
24275207 CTTTCCTCAC
24275217 ATATTTCTGAGCTAACATCGAAG
1 ATATTTCTGAGCTAACATCGAAG
* * * *
24275240 ATATCACTGCTG-GCAAACCATTC-TAT
1 ATAT---TTCTGAGCTAA-CA-TCGAAG
24275266 ATATTTCTGAGCTAACATCGAAG
1 ATATTTCTGAGCTAACATCGAAG
24275289 ATAT
1 ATAT
24275293 CACTACTGGC
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
22 2 0.05
23 15 0.39
24 4 0.11
25 4 0.11
26 11 0.29
27 2 0.05
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32
Consensus pattern (23 bp):
ATATTTCTGAGCTAACATCGAAG
Found at i:24278369 original size:14 final size:15
Alignment explanation
Indices: 24278342--24278370 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
24278332 TACTATTCAT
24278342 CCATAGCATAAAATA
1 CCATAGCATAAAATA
24278357 CCATAGC-TAAAATA
1 CCATAGCATAAAATA
24278371 GACTCAAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.52, C:0.21, G:0.07, T:0.21
Consensus pattern (15 bp):
CCATAGCATAAAATA
Found at i:24288989 original size:40 final size:40
Alignment explanation
Indices: 24288888--24289068 Score: 197
Period size: 40 Copynumber: 4.5 Consensus size: 40
24288878 TATTCGAATG
* * * *
24288888 ATATCCAGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * *
24288929 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
24288969 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* **
24289009 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
24289048 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
24289069 ATACTTGGGT
Statistics
Matches: 118, Mismatches: 21, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
37 1 0.01
38 13 0.11
39 16 0.14
40 61 0.52
41 27 0.23
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:24296466 original size:24 final size:25
Alignment explanation
Indices: 24296431--24296482 Score: 88
Period size: 24 Copynumber: 2.1 Consensus size: 25
24296421 GTCAACCCAC
*
24296431 TTTTTTGGCTTTTCAGCCTTT-CAG
1 TTTTTTGACTTTTCAGCCTTTACAG
24296455 TTTTTTGACTTTTCAGCCTTTACAG
1 TTTTTTGACTTTTCAGCCTTTACAG
24296480 TTT
1 TTT
24296483 CACATCCATT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 20 0.77
25 6 0.23
ACGTcount: A:0.12, C:0.19, G:0.13, T:0.56
Consensus pattern (25 bp):
TTTTTTGACTTTTCAGCCTTTACAG
Found at i:24299132 original size:43 final size:45
Alignment explanation
Indices: 24299012--24299132 Score: 133
Period size: 43 Copynumber: 2.8 Consensus size: 45
24299002 TCACATATCG
* * * * *
24299012 ATGCCACTATCCCAGACAGGGTCTTACATG-AA-ATCAATTAACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCTCAATTAACA
* **
24299055 ATGCCAATGTCCGAGACATGGTCTTACACATAATCTCAA-T-ACA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCTCAATTAACA
*
24299098 ATTCCAATGTCCCAGACATGGTCTTACATGTAATC
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATC
24299133 ATATCTCGAT
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
43 57 0.89
44 3 0.05
45 4 0.06
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (45 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCTCAATTAACA
Found at i:24299682 original size:28 final size:29
Alignment explanation
Indices: 24299618--24299682 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 29
24299608 TTTTCATTTA
* *
24299618 TTTCCCAATTTAACCCCTCAATTTACACT
1 TTTCTCAATTTAACCCCTCAATTAACACT
* *
24299647 TTTCTCAATTTAATCCCT-AATTAACATT
1 TTTCTCAATTTAACCCCTCAATTAACACT
*
24299675 TTTGTCAA
1 TTTCTCAA
24299683 AAATCACTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
28 15 0.48
29 16 0.52
ACGTcount: A:0.29, C:0.26, G:0.02, T:0.43
Consensus pattern (29 bp):
TTTCTCAATTTAACCCCTCAATTAACACT
Found at i:24307319 original size:60 final size:60
Alignment explanation
Indices: 24307252--24307371 Score: 179
Period size: 60 Copynumber: 2.0 Consensus size: 60
24307242 AATGGTAGAA
* * *
24307252 ATCTTATTGGGATCAACTTC-AATAACATTTCCTGAAACGATGTGGCCTAGGAATCCAACT
1 ATCTTATTAGAATCAAC-TCGAATAACATTGCCTGAAACGATGTGGCCTAGGAATCCAACT
* *
24307312 ATCTTATTAGAATCAACTCGAATACCATTGCCTGAAATGATGTGGCCTAGGAATCCAACT
1 ATCTTATTAGAATCAACTCGAATAACATTGCCTGAAACGATGTGGCCTAGGAATCCAACT
24307372 TCCCGAAGCC
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
59 2 0.04
60 52 0.96
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.29
Consensus pattern (60 bp):
ATCTTATTAGAATCAACTCGAATAACATTGCCTGAAACGATGTGGCCTAGGAATCCAACT
Found at i:24312625 original size:31 final size:31
Alignment explanation
Indices: 24312578--24312678 Score: 175
Period size: 31 Copynumber: 3.3 Consensus size: 31
24312568 CTTAAGTACC
* *
24312578 AAGCATTTCCATAAATCATATCACTGGGCCG
1 AAGCCTTTTCATAAATCATATCACTGGGCCG
*
24312609 AAGCCTTTTCATAAATCATATCACTGGGCCA
1 AAGCCTTTTCATAAATCATATCACTGGGCCG
24312640 AAGCCTTTTCATAAATCATATCACTGGGCCG
1 AAGCCTTTTCATAAATCATATCACTGGGCCG
24312671 AAGCCTTT
1 AAGCCTTT
24312679 ACTGTAAACG
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 66 1.00
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.29
Consensus pattern (31 bp):
AAGCCTTTTCATAAATCATATCACTGGGCCG
Found at i:24312749 original size:42 final size:42
Alignment explanation
Indices: 24312702--24312793 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
24312692 TGGCCCTTAG
*
24312702 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
24312744 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
24312786 GCTCATTT
1 GCCCATTT
24312794 GGGGAGACTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.33
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:24312955 original size:24 final size:25
Alignment explanation
Indices: 24312928--24312986 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 25
24312918 TTGGAGGCCT
*
24312928 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCCTCTTTTAATAAACTAGGGCAA
* *
24312952 AGCCT-TTTCTGATAAACTAGGGCAG
1 AGCCTCTTT-TAATAAACTAGGGCAA
24312977 AGCC-CTTTTA
1 AGCCTCTTTTA
24312987 GCACTTCCTC
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
23 3 0.11
24 9 0.32
25 16 0.57
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (25 bp):
AGCCTCTTTTAATAAACTAGGGCAA
Found at i:24314008 original size:27 final size:27
Alignment explanation
Indices: 24313983--24314081 Score: 155
Period size: 27 Copynumber: 3.7 Consensus size: 27
24313973 TTTGTAAATC
*
24313983 AGGGGTATTTTGGTAACTTTACAAA-T
1 AGGGGTATTTTGGTAATTTTACAAACT
* *
24314009 TGAGGGTATTTCGGTAATTTTACAAACT
1 AG-GGGTATTTTGGTAATTTTACAAACT
24314037 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
24314064 AGGGGTATTTTGGTAATT
1 AGGGGTATTTTGGTAATT
24314082 CTATCCTACA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
26 1 0.02
27 63 0.95
28 2 0.03
ACGTcount: A:0.28, C:0.07, G:0.24, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:24314095 original size:54 final size:53
Alignment explanation
Indices: 24313982--24314123 Score: 153
Period size: 54 Copynumber: 2.7 Consensus size: 53
24313972 TTTTGTAAAT
* * *
24313982 CAGGGGTATTTTGGTAACTTTACAAATTGAGGGTATTTCGGTAATTTTACAAA
1 CAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTCTACAAA
* **
24314035 CTAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTCTATCCTA
1 C-AGGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCGGTAATTCTA-CAAA
** * *
24314090 CAGGGGTATTTCAGTAATTTCAC-AATCGAGGGTA
1 CAGGGGTATTTTGGTAATTTTACAAATAGAGGGTA
24314124 AAACGGTAAT
Statistics
Matches: 75, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
52 2 0.03
53 8 0.11
54 60 0.80
55 5 0.07
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.37
Consensus pattern (53 bp):
CAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTCTACAAA
Found at i:24314121 original size:27 final size:26
Alignment explanation
Indices: 24313979--24314121 Score: 96
Period size: 27 Copynumber: 5.3 Consensus size: 26
24313969 TAATTTTGTA
24313979 AATCAGGGGTATTTTGGTAACTTT-AC
1 AATCAGGGGTATTTTGGTAA-TTTCAC
* * *
24314005 AAAT-TGAGGGTATTTCGGTAATTTTAC
1 -AATCAG-GGGTATTTTGGTAATTTCAC
* *
24314032 AAACTAGGGGTATTTTGGTAATTTTAC
1 AATC-AGGGGTATTTTGGTAATTTCAC
*
24314059 AAACTAGGGGTATTTTGGTAA-TTCTATC
1 AATC-AGGGGTATTTTGGTAATTTC-A-C
* **
24314087 -CTACAGGGGTATTTCAGTAATTTCAC
1 AAT-CAGGGGTATTTTGGTAATTTCAC
24314113 AATCGAGGG
1 AATC-AGGG
24314122 TAAAACGGTA
Statistics
Matches: 95, Mismatches: 11, Indels: 20
0.75 0.09 0.16
Matches are distributed among these distances:
26 10 0.11
27 79 0.83
28 6 0.06
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (26 bp):
AATCAGGGGTATTTTGGTAATTTCAC
Found at i:24314151 original size:27 final size:27
Alignment explanation
Indices: 24314113--24314310 Score: 245
Period size: 27 Copynumber: 7.3 Consensus size: 27
24314103 GTAATTTCAC
*
24314113 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
24314140 AA-CTAAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
24314167 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
24314194 AATCGAGGGTAAAATGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
24314221 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
24314248 AATCGAGGATGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
24314275 AATCGAGGGTAAAACGGTACTTCTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
24314302 AATCGAGGG
1 AATCGAGGG
24314311 CATTTCAGTA
Statistics
Matches: 149, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 147 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.10, G:0.24, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:24314230 original size:81 final size:81
Alignment explanation
Indices: 24314113--24314310 Score: 272
Period size: 81 Copynumber: 2.4 Consensus size: 81
24314103 GTAATTTCAC
* * * * *
24314113 AATCGAGGGTAAAACGGTAATTTTGTAAA-CTAAGGGTAAAATGGTAATTTTGTAAATCAAGGGT
1 AATCGAGGGTAAAACGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTTTGTAAATCAAGGAT
*
24314177 AAAACGGTAATTCTGTA
65 AAAACGGTAATTCTATA
* * * *
24314194 AATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGATG
1 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCAAGGATA
24314259 AAACGGTAATTCTATA
66 AAACGGTAATTCTATA
* *
24314275 AATCGAGGGTAAAACGGTACTTCTACAAATCGAGGG
1 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGG
24314311 CATTTCAGTA
Statistics
Matches: 102, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
81 101 0.99
82 1 0.01
ACGTcount: A:0.39, C:0.10, G:0.24, T:0.27
Consensus pattern (81 bp):
AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCAAGGATA
AAACGGTAATTCTATA
Found at i:24314322 original size:81 final size:81
Alignment explanation
Indices: 24314156--24314330 Score: 224
Period size: 81 Copynumber: 2.2 Consensus size: 81
24314146 GGGTAAAATG
* * * *
24314156 GTAATTTTGTAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGATAATTCTATA
1 GTAATTTTGTAAATCAAGGATAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTACA
* *
24314221 AATCGAGGGTAAAACG
66 AATCGAGGGCAAAACA
* * * *
24314237 GTAATTTTGTAAATCGAGGATGAAACGGTAATTCTATAAATCGAGGGTAAAACGGTACTTCTACA
1 GTAATTTTGTAAATCAAGGATAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTACA
***
24314302 AATCGAGGGCATTTCA
66 AATCGAGGGCAAAACA
*
24314318 GTAATTTGGTAAA
1 GTAATTTTGTAAA
24314331 CTAAAGTATT
Statistics
Matches: 80, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.38, C:0.10, G:0.22, T:0.29
Consensus pattern (81 bp):
GTAATTTTGTAAATCAAGGATAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTACA
AATCGAGGGCAAAACA
Found at i:24316605 original size:31 final size:31
Alignment explanation
Indices: 24316562--24316769 Score: 355
Period size: 31 Copynumber: 6.7 Consensus size: 31
24316552 TTAGTCTTGA
*
24316562 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
24316592 CATATCACTGGGCCAAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
24316623 CATATCACTGGGCCGAACCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
24316654 CATATCATTGGGCTGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
24316685 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
24316716 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
24316747 CATATCACTGGGCCTAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
24316770 ACTGTAAATG
Statistics
Matches: 167, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
30 5 0.03
31 162 0.97
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:24316840 original size:42 final size:42
Alignment explanation
Indices: 24316793--24316884 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
24316783 TGGCCCTTAG
* *
24316793 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTAAGCAA
* *
24316835 GCCCATTTCAATATCACATGTAGTGTCACTGAATGTAAGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTAAGCAA
24316877 GCCCATTT
1 GCCCATTT
24316885 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTAAGCAA
Found at i:24317060 original size:25 final size:25
Alignment explanation
Indices: 24317032--24317100 Score: 84
Period size: 25 Copynumber: 2.8 Consensus size: 25
24317022 CTCTTTTAAT
* * *
24317032 AACTGGGGTAAAGCCTTTTCTGATA
1 AACTGGGGCAAAGCCCTTTCCGATA
*
24317057 AACTGGGGCAAAGCCCTTTCCGGTA
1 AACTGGGGCAAAGCCCTTTCCGATA
* *
24317082 AACTAGGGCAGAGCCCTTT
1 AACTGGGGCAAAGCCCTTT
24317101 TAGCACTTCC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTCCGATA
Found at i:24317973 original size:27 final size:27
Alignment explanation
Indices: 24317912--24317975 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
24317902 GGTGTATTCA
24317912 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACCATACAAGGGTATTACGG
* * *
24317939 TCACTTTACCCTACAGGGGCT-TTACGG
1 TCATTTTACCATACAAGGG-TATTACGG
*
24317966 TCTTTTTACC
1 TCATTTTACC
24317976 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAAGGGTATTACGG
Found at i:24318062 original size:27 final size:25
Alignment explanation
Indices: 24318030--24318125 Score: 79
Period size: 27 Copynumber: 3.6 Consensus size: 25
24318020 TAAATCTACA
24318030 AACCAAGGGTATTTCAGTAATTTTGT
1 AACCAAGGGTATTTCA-TAATTTTGT
* *
24318056 AATCCAATGGTATTTGTATAATTTT-T
1 AA-CCAAGGGTATTT-CATAATTTTGT
24318082 AAAAAGCCAAGGGTATTTCTATAATTTTGT
1 ---AA-CCAAGGGTATTTC-ATAATTTTGT
24318112 AACTC-AGGGTATTT
1 AAC-CAAGGGTATTT
24318126 TGGTAATTTT
Statistics
Matches: 57, Mismatches: 5, Indels: 16
0.73 0.06 0.21
Matches are distributed among these distances:
26 13 0.23
27 21 0.37
28 1 0.02
29 21 0.37
30 1 0.02
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.41
Consensus pattern (25 bp):
AACCAAGGGTATTTCATAATTTTGT
Found at i:24318151 original size:27 final size:26
Alignment explanation
Indices: 24318112--24318240 Score: 177
Period size: 27 Copynumber: 4.8 Consensus size: 26
24318102 ATAATTTTGT
24318112 AACTCAGGGTATTTTGGTAATTTTACA
1 AACT-AGGGTATTTTGGTAATTTTACA
* *
24318139 AATTGAGGGTATTTTGGTAATTTCACA
1 AACT-AGGGTATTTTGGTAATTTTACA
* * *
24318166 AACTAGTGGTATATCGGTAATTTTGCA
1 AACTAG-GGTATTTTGGTAATTTTACA
24318193 AACTAGGGGTATTTTGGTAATTTTACA
1 AACTA-GGGTATTTTGGTAATTTTACA
24318220 AACTAGGGTATTTTGGTAATT
1 AACTAGGGTATTTTGGTAATT
24318241 CTATCCTATA
Statistics
Matches: 89, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
26 18 0.20
27 70 0.79
28 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (26 bp):
AACTAGGGTATTTTGGTAATTTTACA
Found at i:24318253 original size:53 final size:52
Alignment explanation
Indices: 24318112--24318282 Score: 177
Period size: 54 Copynumber: 3.2 Consensus size: 52
24318102 ATAATTTTGT
*
24318112 AACTCAGGGTATTTTGGTAATTT-TACAAATTGAGGGTATTTTGGTAATTTCACA
1 AACT-AGGGTATTTTGGTAATTTAT-CAAATAG-GGGTATTTTGGTAATTTCACA
* * *
24318166 AACTAGTGGTATATCGGTAATTT-TGCAAACTAGGGGTATTTTGGTAATTTTACA
1 AACTAG-GGTATTTTGGTAATTTAT-CAAA-TAGGGGTATTTTGGTAATTTCACA
**
24318220 AACTAGGGTATTTTGGTAATTCTATCCTATAGGGGTATTTCT-GTAATTTCACA
1 AACTAGGGTATTTTGGTAATT-TATCAAATAGGGGTATTT-TGGTAATTTCACA
* *
24318273 ATCGAGGGTA
1 AACTAGGGTA
24318283 AAATAGTAAT
Statistics
Matches: 100, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
53 44 0.44
54 53 0.53
55 3 0.03
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.39
Consensus pattern (52 bp):
AACTAGGGTATTTTGGTAATTTATCAAATAGGGGTATTTTGGTAATTTCACA
Found at i:24318266 original size:80 final size:80
Alignment explanation
Indices: 24318092--24318268 Score: 218
Period size: 80 Copynumber: 2.2 Consensus size: 80
24318082 AAAAAGCCAA
* * *
24318092 GGGTATTTCTATAATTTTGTAACTCAGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGT
1 GGGTATTTCTGTAATTTTGAAACTCAGGGTATTTTGGTAATTTTACAAACTGAGGGTATTTTGGT
24318157 AATTTCACAAACTAG
66 AATTTCACAAACTAG
* * *
24318172 TGGTATATCGGTAATTTTGCAAACT-AGGGGTATTTTGGTAATTTTACAAACT-AGGGTATTTTG
1 GGGTATTTCTGTAATTTTG-AAACTCA-GGGTATTTTGGTAATTTTACAAACTGAGGGTATTTTG
**
24318235 GTAA-TTCTATCCTA-TAG
64 GTAATTTC-A-CAAACTAG
24318252 GGGTATTTCTGTAATTT
1 GGGTATTTCTGTAATTT
24318269 CACAATCGAG
Statistics
Matches: 82, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
79 3 0.04
80 49 0.60
81 30 0.37
ACGTcount: A:0.27, C:0.09, G:0.21, T:0.43
Consensus pattern (80 bp):
GGGTATTTCTGTAATTTTGAAACTCAGGGTATTTTGGTAATTTTACAAACTGAGGGTATTTTGGT
AATTTCACAAACTAG
Found at i:24318306 original size:27 final size:27
Alignment explanation
Indices: 24318272--24318469 Score: 279
Period size: 27 Copynumber: 7.3 Consensus size: 27
24318262 GTAATTTCAC
* *
24318272 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
24318299 AATTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
24318326 AATCGAGGGTAAAATGATAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
24318353 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
24318380 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * *
24318407 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
**
24318434 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTGTA
24318461 AATCGAGGG
1 AATCGAGGG
24318470 CATTTCAGTA
Statistics
Matches: 155, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 155 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTGTA
Found at i:24328873 original size:23 final size:24
Alignment explanation
Indices: 24328846--24328890 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
24328836 TTTCACAAGC
*
24328846 TTATTCAATTCA-ATTTTCATACA
1 TTATTCAATTCACACTTTCATACA
*
24328869 TTATTCATTTCACACTTTCATA
1 TTATTCAATTCACACTTTCATA
24328891 TAATCAAATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.31, C:0.20, G:0.00, T:0.49
Consensus pattern (24 bp):
TTATTCAATTCACACTTTCATACA
Found at i:24329356 original size:42 final size:43
Alignment explanation
Indices: 24329296--24329410 Score: 153
Period size: 44 Copynumber: 2.7 Consensus size: 43
24329286 TTAATGCTAC
* *
24329296 TGTCCCAGATAGGGTCTTACACGAAATCA-AA-TACGATGCCAA
1 TGTCCCAGACATGGTCTTACACGAAATCATAAGT-CGATGCCAA
*
24329338 TGTCCCAGACATGATCTTACACGTAAATCATAAGTCGATGCCAA
1 TGTCCCAGACATGGTCTTACACG-AAATCATAAGTCGATGCCAA
* *
24329382 CGTCCCAGACATGGTCTTACATGAAATCA
1 TGTCCCAGACATGGTCTTACACGAAATCA
24329411 CATATTGGAT
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
42 20 0.31
43 12 0.19
44 31 0.48
45 1 0.02
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.23
Consensus pattern (43 bp):
TGTCCCAGACATGGTCTTACACGAAATCATAAGTCGATGCCAA
Found at i:24331933 original size:27 final size:27
Alignment explanation
Indices: 24331876--24331933 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
24331866 ATATCATAAG
* * * *
24331876 GGGTATATCAGTCATTTTACCTCGTAG
1 GGGTATAACAGTCATTTCACCTAGTAA
24331903 GGGTATAACAGTCATTTCACC-AGTATA
1 GGGTATAACAGTCATTTCACCTAGTA-A
24331930 GGGT
1 GGGT
24331934 CTAAGTGTAC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 3 0.12
27 23 0.88
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (27 bp):
GGGTATAACAGTCATTTCACCTAGTAA
Found at i:24361689 original size:34 final size:33
Alignment explanation
Indices: 24361651--24361715 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 33
24361641 GTAGCAGTAA
*
24361651 CAGTCTGGGCCTGAGCCCATTACAGTATCAGTGG
1 CAGTCTAGGCCTGAGCCCATTACAGTA-CAGTGG
* *
24361685 CAGTCTAGGCCTTAGCCCATTTCAGTACAGT
1 CAGTCTAGGCCTGAGCCCATTACAGTACAGT
24361716 ATGCAAACAC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 4 0.14
34 24 0.86
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.26
Consensus pattern (33 bp):
CAGTCTAGGCCTGAGCCCATTACAGTACAGTGG
Found at i:24362442 original size:8 final size:8
Alignment explanation
Indices: 24362420--24362453 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
24362410 CACTTTTCTG
24362420 GCTTTTCA
1 GCTTTTCA
* *
24362428 ACCTTTCA
1 GCTTTTCA
24362436 GCTTTTCA
1 GCTTTTCA
24362444 GCTTTTCA
1 GCTTTTCA
24362452 GC
1 GC
24362454 CTTCGCAGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.15, C:0.29, G:0.12, T:0.44
Consensus pattern (8 bp):
GCTTTTCA
Found at i:24364696 original size:18 final size:18
Alignment explanation
Indices: 24364673--24364735 Score: 58
Period size: 18 Copynumber: 3.4 Consensus size: 18
24364663 GAACACATAA
24364673 AGTAAGCTTTAAAAGCTT
1 AGTAAGCTTTAAAAGCTT
* *
24364691 AGTAAGCAATATACAAA--TAA
1 AGTAAGC--TTTA-AAAGCT-T
24364711 AGTAAGCTTTAAAAGCTT
1 AGTAAGCTTTAAAAGCTT
24364729 AGTAAGC
1 AGTAAGC
24364736 CATATACAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 12
0.69 0.08 0.24
Matches are distributed among these distances:
17 3 0.09
18 17 0.49
19 2 0.06
20 10 0.29
21 3 0.09
ACGTcount: A:0.46, C:0.11, G:0.16, T:0.27
Consensus pattern (18 bp):
AGTAAGCTTTAAAAGCTT
Found at i:24364711 original size:38 final size:38
Alignment explanation
Indices: 24364669--24364751 Score: 157
Period size: 38 Copynumber: 2.2 Consensus size: 38
24364659 GAAAGAACAC
24364669 ATAAAGTAAGCTTTAAAAGCTTAGTAAGCAATATACAA
1 ATAAAGTAAGCTTTAAAAGCTTAGTAAGCAATATACAA
*
24364707 ATAAAGTAAGCTTTAAAAGCTTAGTAAGCCATATACAA
1 ATAAAGTAAGCTTTAAAAGCTTAGTAAGCAATATACAA
24364745 ATAAAGT
1 ATAAAGT
24364752 CATCATATGA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 44 1.00
ACGTcount: A:0.49, C:0.11, G:0.13, T:0.27
Consensus pattern (38 bp):
ATAAAGTAAGCTTTAAAAGCTTAGTAAGCAATATACAA
Found at i:24365143 original size:43 final size:45
Alignment explanation
Indices: 24365057--24365168 Score: 142
Period size: 43 Copynumber: 2.6 Consensus size: 45
24365047 GATGCCACTA
* * * *
24365057 TCCCAGACAGGGTCTTACACG-AA-ATCAATTAACGATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCTCAATTAACAATGCAAATG
*
24365100 TCCCAGACATGGTCTTACACGTAATCTCAA-T-ACAATGGAAATG
1 TCCCAGACATGGTCTTACACGTAATCTCAATTAACAATGCAAATG
*
24365143 TCCCAGACATGGTCTTACATGTAATC
1 TCCCAGACATGGTCTTACACGTAATC
24365169 ATATCTCGAT
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
43 54 0.89
44 3 0.05
45 4 0.07
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (45 bp):
TCCCAGACATGGTCTTACACGTAATCTCAATTAACAATGCAAATG
Found at i:24365708 original size:28 final size:29
Alignment explanation
Indices: 24365658--24365712 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
24365648 ATTTATTTTA
*
24365658 CAATTTAACCCCTCAATTTACATTTTTCT
1 CAATTTAACCCCTCAATTGACATTTTTCT
*
24365687 CAATTTAATCCCT-AATTGACATTTTT
1 CAATTTAACCCCTCAATTGACATTTTT
24365713 GTGAAAAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.29, C:0.24, G:0.02, T:0.45
Consensus pattern (29 bp):
CAATTTAACCCCTCAATTGACATTTTTCT
Found at i:24379995 original size:27 final size:27
Alignment explanation
Indices: 24379965--24380130 Score: 163
Period size: 27 Copynumber: 6.1 Consensus size: 27
24379955 AAGTACTCCC
* *
24379965 GATTTATAGAATTACCGTTTTACCCTT
1 GATTTACAAAATTACCGTTTTACCCTT
** * * *
24379992 GATTTTTAAAATTACTGTTTTACCATC
1 GATTTACAAAATTACCGTTTTACCCTT
**
24380019 GATTTGTAAAATTACCGTTTTACCCTT
1 GATTTACAAAATTACCGTTTTACCCTT
* * *
24380046 GATTTACAGAATTACTGGTTTACCC-T
1 GATTTACAAAATTACCGTTTTACCCTT
* * *
24380072 CAGTTTACAAAATTATCGTTTTACCCTC
1 GA-TTTACAAAATTACCGTTTTACCCTT
* *
24380100 GATTTACAGAATTACCATTTTACCCTT
1 GATTTACAAAATTACCGTTTTACCCTT
24380127 GATT
1 GATT
24380131 GTGAAATTAC
Statistics
Matches: 112, Mismatches: 25, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
26 2 0.02
27 109 0.97
28 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.10, T:0.43
Consensus pattern (27 bp):
GATTTACAAAATTACCGTTTTACCCTT
Found at i:24380022 original size:54 final size:54
Alignment explanation
Indices: 24379964--24380114 Score: 187
Period size: 54 Copynumber: 2.8 Consensus size: 54
24379954 AAAGTACTCC
* ** *
24379964 CGATTTATAGAATTACCGTTTTACCCTTGATTTTTAAAATTACTGTTTTACCAT
1 CGATTTATAAAATTACCGTTTTACCCTTGATTTACAAAATTACTGGTTTACCAT
* * *
24380018 CGATTTGTAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGGTTTACCCT
1 CGATTTATAAAATTACCGTTTTACCCTTGATTTACAAAATTACTGGTTTACCAT
* * * *
24380072 C-AGTTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTAC
1 CGA-TTTATAAAATTACCGTTTTACCCTTGATTTACAAAATTAC
24380115 CATTTTACCC
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
53 1 0.01
54 84 0.99
ACGTcount: A:0.28, C:0.19, G:0.11, T:0.42
Consensus pattern (54 bp):
CGATTTATAAAATTACCGTTTTACCCTTGATTTACAAAATTACTGGTTTACCAT
Found at i:24380057 original size:81 final size:81
Alignment explanation
Indices: 24379965--24380130 Score: 201
Period size: 81 Copynumber: 2.0 Consensus size: 81
24379955 AAGTACTCCC
* * * ** **
24379965 GATTTATAGAATTACCGTTTTACCCT-TGATTTTTAAAATTA-CTGTTTTACCATCGATTTGTAA
1 GATTTACAGAATTACCGGTTTACCCTCAG-TTTACAAAATTATC-GTTTTACCATCGATTTACAA
*
24380028 AATTACCGTTTTACCCTT
64 AATTACCATTTTACCCTT
* * *
24380046 GATTTACAGAATTACTGGTTTACCCTCAGTTTACAAAATTATCGTTTTACCCTCGATTTACAGAA
1 GATTTACAGAATTACCGGTTTACCCTCAGTTTACAAAATTATCGTTTTACCATCGATTTACAAAA
24380111 TTACCATTTTACCCTT
66 TTACCATTTTACCCTT
24380127 GATT
1 GATT
24380131 GTGAAATTAC
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
81 70 0.97
82 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.10, T:0.43
Consensus pattern (81 bp):
GATTTACAGAATTACCGGTTTACCCTCAGTTTACAAAATTATCGTTTTACCATCGATTTACAAAA
TTACCATTTTACCCTT
Found at i:24380165 original size:27 final size:27
Alignment explanation
Indices: 24380135--24380330 Score: 239
Period size: 27 Copynumber: 7.3 Consensus size: 27
24380125 TTGATTGTGA
*
24380135 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
24380162 AATTATCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
24380189 AAATACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
24380216 AATTACCAAAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
24380243 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
24380270 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
24380297 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
24380324 AATTACC
1 AATTACC
24380331 ATTTTGCCCC
Statistics
Matches: 142, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 142 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:24380235 original size:81 final size:81
Alignment explanation
Indices: 24380135--24380328 Score: 280
Period size: 81 Copynumber: 2.4 Consensus size: 81
24380125 TTGATTGTGA
*
24380135 AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACTGAAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAA
*
24380200 TACCCTTATAGGATAG
66 TACCCCTATAGGATAG
* * *
24380216 AATTACCAAAATACCCCTGTATGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAA
* *
24380281 TACCCCTGTAGGGTAG
66 TACCCCTATAGGATAG
* * * * *
24380297 AATTACCGAGATACCCTTGTGGGGTAAAATTA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTA
24380329 CCATTTTGCC
Statistics
Matches: 100, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 100 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (81 bp):
AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAAA
TACCCCTATAGGATAG
Found at i:24380567 original size:27 final size:26
Alignment explanation
Indices: 24380529--24380611 Score: 96
Period size: 27 Copynumber: 3.1 Consensus size: 26
24380519 CGGAGGAAGC
24380529 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
24380556 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * *
24380582 GTATTTGGTGACTCA-GTCACAATATCT
1 GT-TCTGGTGGCT-ATGCCACAATATCT
24380609 GTT
1 GTT
24380612 GACCGATCGA
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
26 10 0.20
27 39 0.80
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:24380944 original size:27 final size:27
Alignment explanation
Indices: 24380922--24380995 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
24380912 TAGGTGGGTT
*
24380922 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
24380949 TGCCACAATATCTGTATCTGGTGAG-TC
1 TGCCACAATATCTGTATCTGGTG-GCTC
* *
24380976 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
24380996 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
26 5 0.12
27 35 0.83
28 2 0.05
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:24381149 original size:6 final size:6
Alignment explanation
Indices: 24381138--24381305 Score: 177
Period size: 6 Copynumber: 27.8 Consensus size: 6
24381128 TTATCACGTA
* *
24381138 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
* *
24381186 ATTCTG -TTACTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
24381235 ATTCTA ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATTCTG
24381283 -TTACTG ATTCTG ATTCTG ATTCT
1 ATT-CTG ATTCTG ATTCTG ATTCT
24381306 CATTTTGGTT
Statistics
Matches: 137, Mismatches: 12, Indels: 26
0.78 0.07 0.15
Matches are distributed among these distances:
5 10 0.07
6 117 0.85
7 8 0.06
8 2 0.01
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:24381177 original size:30 final size:30
Alignment explanation
Indices: 24381136--24381305 Score: 210
Period size: 30 Copynumber: 5.8 Consensus size: 30
24381126 TTTTATCACG
*
24381136 TAATTCTGATTCTGATTCTGATTCTGTTAC
1 TAATACTGATTCTGATTCTGATTCTGTTAC
24381166 TAATACTGATTCTGATTCTGATTCTG----
1 TAATACTGATTCTGATTCTGATTCTGTTAC
*
24381192 T--TACTGATTCTGATTCTGATTCTGTCACC
1 TAATACTGATTCTGATTCTGATTCTGTTA-C
* *
24381221 TAATTCTGATTCTGATTCTAATTCTGTTAC
1 TAATACTGATTCTGATTCTGATTCTGTTAC
*
24381251 TAATATTGATTCTGATTCTGATTCTGATT-C
1 TAATACTGATTCTGATTCTGATTCTG-TTAC
**
24381281 TGTTACTGATTCTGATTCTGATTCT
1 TAATACTGATTCTGATTCTGATTCT
24381306 CATTTTGGTT
Statistics
Matches: 122, Mismatches: 10, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
24 23 0.19
26 1 0.01
29 1 0.01
30 72 0.59
31 25 0.20
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.49
Consensus pattern (30 bp):
TAATACTGATTCTGATTCTGATTCTGTTAC
Found at i:24381261 original size:85 final size:84
Alignment explanation
Indices: 24381113--24381300 Score: 288
Period size: 85 Copynumber: 2.2 Consensus size: 84
24381103 TTGCATTCAC
* * * * *
24381113 GTTCTGGTTCTGATTTTATCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
1 GTTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTAATTCTGTTACTAATACTGATTC
24381178 TGATTCTGATTCTG-TTACT
66 TGATTCTGATTCTGATT-CT
*
24381197 GATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTAATTCTGTTACTAATATTGATT
1 G-TTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTAATTCTGTTACTAATACTGATT
24381262 CTGATTCTGATTCTGATTCT
65 CTGATTCTGATTCTGATTCT
24381282 GTTACTGATTCTGATTCTG
1 GTT-CTGATTCTGATTCTG
24381301 ATTCTCATTT
Statistics
Matches: 95, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
84 3 0.03
85 90 0.95
86 2 0.02
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.48
Consensus pattern (84 bp):
GTTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTAATTCTGTTACTAATACTGATTC
TGATTCTGATTCTGATTCT
Found at i:24383704 original size:23 final size:24
Alignment explanation
Indices: 24383677--24383721 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
24383667 TTTCACAAGC
*
24383677 TTATTCAATTCA-AGTTTCATACA
1 TTATTCAATTCACACTTTCATACA
24383700 TTATTCAATTCACACTTTCATA
1 TTATTCAATTCACACTTTCATA
24383722 TAATCAAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.33, C:0.20, G:0.02, T:0.44
Consensus pattern (24 bp):
TTATTCAATTCACACTTTCATACA
Found at i:24384166 original size:43 final size:42
Alignment explanation
Indices: 24384097--24384252 Score: 156
Period size: 42 Copynumber: 3.6 Consensus size: 42
24384087 AATGCCAACA
* * *
24384097 TCCCAGAC-GTGGTCATACATGTAATCAAACATCGATGCCACTG
1 TCCCAGACAG-GGTCTTACACGAAATCAAA-ATCGATGCCACTG
*
24384140 TCCCAGACAGGGTCTTACACGAAATC-AAATACGATGCCAATG
1 TCCCAGACAGGGTCTTACACGAAATCAAAAT-CGATGCCACTG
* *
24384182 TCCCAGACATGGTCTTACACGTAAATCATAAGTCGATGCCAAC-G
1 TCCCAGACAGGGTCTTACACG-AAATCA-AAATCGATGCC-ACTG
* **
24384226 TCCAAGACATAGTCTTACACGAAATCA
1 TCCCAGACAGGGTCTTACACGAAATCA
24384253 CATATTGGAT
Statistics
Matches: 98, Mismatches: 9, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
41 2 0.02
42 32 0.33
43 32 0.33
44 28 0.29
45 4 0.04
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.22
Consensus pattern (42 bp):
TCCCAGACAGGGTCTTACACGAAATCAAAATCGATGCCACTG
Found at i:24384186 original size:42 final size:42
Alignment explanation
Indices: 24384083--24384252 Score: 166
Period size: 43 Copynumber: 4.0 Consensus size: 42
24384073 CGGAAAGTAC
* * * * *
24384083 ATACAATGCCAACATCCCAGAC-GTGGTCATACATGTAATCAA
1 ATACGATGCCAACGTCCCAGACAG-GGTCTTACACGAAATCAA
*
24384125 ACATCGATGCC-ACTGTCCCAGACAGGGTCTTACACGAAATCAA
1 ATA-CGATGCCAAC-GTCCCAGACAGGGTCTTACACGAAATCAA
* *
24384168 ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCATA
1 ATACGATGCCAACGTCCCAGACAGGGTCTTACACG-AAATCA-A
* **
24384212 AGT-CGATGCCAACGTCCAAGACATAGTCTTACACGAAATCA
1 A-TACGATGCCAACGTCCCAGACAGGGTCTTACACGAAATCA
24384253 CATATTGGAT
Statistics
Matches: 109, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
42 32 0.29
43 44 0.40
44 32 0.29
45 1 0.01
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.21
Consensus pattern (42 bp):
ATACGATGCCAACGTCCCAGACAGGGTCTTACACGAAATCAA
Found at i:24384241 original size:86 final size:85
Alignment explanation
Indices: 24384083--24384252 Score: 209
Period size: 86 Copynumber: 2.0 Consensus size: 85
24384073 CGGAAAGTAC
* * *
24384083 ATACAATGCCAACATCCCAGACGTGGTCATACATGTAATCAAACATCGATGCCACTGTCCCAGAC
1 ATACAATGCCAACATCCCAGACATGGTCATACACGTAATCAAACATCGATGCCACTGTCCAAGAC
*
24384148 AGGGTCTTACACGAAATCAA
66 AGAGTCTTACACGAAATCAA
* ** * *
24384168 ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAAATCATAA-GTCGATGCCAAC-GTCCAA
1 ATACAATGCCAACATCCCAGACATGGTCATACACGT-AATCA-AACATCGATGCC-ACTGTCCAA
*
24384231 GACATAGTCTTACACGAAATCA
63 GACAGAGTCTTACACGAAATCA
24384253 CATATTGGAT
Statistics
Matches: 72, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
85 30 0.42
86 38 0.53
87 4 0.06
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.21
Consensus pattern (85 bp):
ATACAATGCCAACATCCCAGACATGGTCATACACGTAATCAAACATCGATGCCACTGTCCAAGAC
AGAGTCTTACACGAAATCAA
Found at i:24386749 original size:27 final size:27
Alignment explanation
Indices: 24386690--24386750 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
24386680 CATACATACA
* * *
24386690 TAGGGGTATATCAGTCATTTTACCTTG
1 TAGGGGTATAACAGTCATTTCACCTAG
24386717 TAGGGGTATAACAGTCATTTCACC-AG
1 TAGGGGTATAACAGTCATTTCACCTAG
24386743 TATGGGGT
1 TA-GGGGT
24386751 CTAAGTGTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 3 0.10
27 27 0.90
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (27 bp):
TAGGGGTATAACAGTCATTTCACCTAG
Found at i:24391656 original size:39 final size:40
Alignment explanation
Indices: 24391597--24391733 Score: 190
Period size: 39 Copynumber: 3.5 Consensus size: 40
24391587 TTCTGGAGTG
24391597 GTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAATT
1 GTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAATT
*
24391637 GTAT-CGGGTTTAAAAACCCGCAGGCTATATGCTGGAATT
1 GTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAATT
* * *
24391676 GTATCCAGGTTTAAAGACCCGCAGGCT-TCGTGCTGGAATG
1 GTATCCGGGTTTAAAGACCCGCAGGCTAT-ATGCTGGAATT
* *
24391716 GAATCTGGG-TTAAAGACC
1 GTATCCGGGTTTAAAGACC
24391734 TGTAGGCTCG
Statistics
Matches: 87, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
39 48 0.55
40 39 0.45
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (40 bp):
GTATCCGGGTTTAAAGACCCGCAGGCTATATGCTGGAATT
Found at i:24391741 original size:39 final size:39
Alignment explanation
Indices: 24391567--24391733 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 39
24391557 GTATCCGAGC
* * * *
24391567 TTAAAGAGCTGCAGGCTTCGTTCTGGAGTGGTATCCGGGT
1 TTAAAGACCCGCAGGCTTCGTGCTGGAATGGTAT-CGGGT
* *
24391607 TTAAAGACCCGCAGGCTAT-ATGCTGGAATTGTATCGGGT
1 TTAAAGACCCGCAGGCT-TCGTGCTGGAATGGTATCGGGT
* * * *
24391646 TTAAAAACCCGCAGGCTAT-ATGCTGGAATTGTATCCAGGT
1 TTAAAGACCCGCAGGCT-TCGTGCTGGAATGGTAT-CGGGT
*
24391686 TTAAAGACCCGCAGGCTTCGTGCTGGAATGGAATCTGGG-
1 TTAAAGACCCGCAGGCTTCGTGCTGGAATGGTATC-GGGT
24391725 TTAAAGACC
1 TTAAAGACC
24391734 TGTAGGCTCG
Statistics
Matches: 110, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
39 49 0.45
40 60 0.55
41 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (39 bp):
TTAAAGACCCGCAGGCTTCGTGCTGGAATGGTATCGGGT
Found at i:24395488 original size:30 final size:30
Alignment explanation
Indices: 24395452--24395511 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
24395442 CTTTAGCTCG
24395452 GATAGTCCCCACACGTAGTTATCGGGTCTT
1 GATAGTCCCCACACGTAGTTATCGGGTCTT
24395482 GATAGTCCCCACACGTAGTTATCGGGTCTT
1 GATAGTCCCCACACGTAGTTATCGGGTCTT
24395512 ACCCAGACAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.20, C:0.27, G:0.23, T:0.30
Consensus pattern (30 bp):
GATAGTCCCCACACGTAGTTATCGGGTCTT
Found at i:24395590 original size:37 final size:37
Alignment explanation
Indices: 24395490--24395592 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
24395480 TTGATAGTCC
* *
24395490 CCACACGTAGTTATCGGGTCTTACCCAGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* * *
24395527 TCATACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
24395564 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
24395593 ATATATTTCC
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:24395819 original size:48 final size:48
Alignment explanation
Indices: 24395765--24396073 Score: 555
Period size: 48 Copynumber: 6.4 Consensus size: 48
24395755 GCCGAATCAC
*
24395765 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * *
24395813 TAGCCATTCAGCTTTACCACATATACATATCTCATACATAGTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
24395861 TAACCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
24395909 TAGCTATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
24395957 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
24396005 TAGCCATTCGGCTTTACCACATATACATATCTCATACAAATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
24396053 TAGCCATTCGGCTTTACCACA
1 TAGCCATTCGGCTTTACCACA
24396074 CACATATATA
Statistics
Matches: 249, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 249 1.00
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:24400122 original size:40 final size:40
Alignment explanation
Indices: 24400073--24400281 Score: 137
Period size: 40 Copynumber: 5.2 Consensus size: 40
24400063 CGGAATTTAA
* *
24400073 CCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAGCTACTCGATCAAATGCCTTCGGGACTTAGC
* * * * *
24400113 CCGGTTATAGCCACTCGCA-CAAAGGCCTTCGGGTCTTAAC
1 CCGGATATAGCTACTCG-ATCAAATGCCTTCGGGACTTAGC
* *
24400153 CCGGATAT-GGTCACTAGCAT-AAATGCCTTCGGGACTTAGC
1 CCGGATATAGCT-ACTCG-ATCAAATGCCTTCGGGACTTAGC
* * *
24400193 CCGGATATAG-TCGCTAGCA-CAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGCT-ACTCG-ATCAAATGCCTTCGGGA-CTTAGC
* * * *
24400233 CCGGATGTAG-TCGCTTAGCA-CAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGCT-AC-TCG-ATCAAATGCCTTCGGGACTTAGC
24400274 CCGGATAT
1 CCGGATAT
24400282 CATTCGAGTA
Statistics
Matches: 141, Mismatches: 20, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
39 4 0.03
40 106 0.75
41 28 0.20
42 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAGCTACTCGATCAAATGCCTTCGGGACTTAGC
Found at i:24400213 original size:80 final size:81
Alignment explanation
Indices: 24400092--24400281 Score: 247
Period size: 80 Copynumber: 2.4 Consensus size: 81
24400082 GCTACTCGTT
* * * *
24400092 CAAATGCCTTCGGGACATAGCCCGGTTATAGCCACTCGCACAAAGGCCTTCGGGTCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGCCACTAGCACAAAGGCCTTCGGATCTTAACCCGG
*
24400157 ATATGGTCAC-TAGCA
66 ATATAGTCACTTAGCA
* * * * **
24400172 TAAATGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGCCACTAGCACAAAGGCCTTCGGATCTTAACCCGG
* *
24400237 ATGTAGTCGCTTAGCA
66 ATATAGTCACTTAGCA
*
24400253 CAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CAAATGCCTTCGGGACTTAGCCCGGATAT
24400282 CATTCGAGTA
Statistics
Matches: 94, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
80 62 0.66
81 32 0.34
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGCCACTAGCACAAAGGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGCA
Found at i:24408892 original size:46 final size:46
Alignment explanation
Indices: 24408730--24408899 Score: 179
Period size: 45 Copynumber: 3.7 Consensus size: 46
24408720 GGTTGAGCAT
* * *
24408730 CCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAATGT
1 CCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * *
24408775 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
24408820 ATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
**
24408868 CCGAGGTCATTGAGTTGAGTCCGAGTTCACTT
1 CCGAACTCATTGAGTTGAGTCCGAGTTCACTT
24408900 TGGGGCGGGT
Statistics
Matches: 104, Mismatches: 11, Indels: 19
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 30 0.29
46 30 0.29
47 27 0.26
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
CCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:24412794 original size:19 final size:19
Alignment explanation
Indices: 24412770--24412809 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
24412760 TGTGTTATCA
*
24412770 TAAATTCATAGGCATAACT
1 TAAATTCATAGACATAACT
**
24412789 TAAATTTGTAGACATAACT
1 TAAATTCATAGACATAACT
24412808 TA
1 TA
24412810 CACATTTTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.35
Consensus pattern (19 bp):
TAAATTCATAGACATAACT
Found at i:24414081 original size:64 final size:64
Alignment explanation
Indices: 24414002--24414130 Score: 222
Period size: 64 Copynumber: 2.0 Consensus size: 64
24413992 GGGGCTAGGA
* * *
24414002 TTGACTTACTTTCAAGCTTGAAAAGTTTAAAAACCCTAGCTATAGAGAGCTTGAGAATTTTGGC
1 TTGACTTACTTTCAAGCTTGAAAAGTTGAAAAACCCTAGCAATAGAGAGCTTGAGAATTTCGGC
*
24414066 TTGACTTACTTTCAAGCTTGAAAAGTTGAAAAACCCTAGCAATGGAGAGCTTGAGAATTTCGGC
1 TTGACTTACTTTCAAGCTTGAAAAGTTGAAAAACCCTAGCAATAGAGAGCTTGAGAATTTCGGC
24414130 T
1 T
24414131 ATTGCATGGA
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 61 1.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (64 bp):
TTGACTTACTTTCAAGCTTGAAAAGTTGAAAAACCCTAGCAATAGAGAGCTTGAGAATTTCGGC
Found at i:24426093 original size:47 final size:48
Alignment explanation
Indices: 24426024--24426207 Score: 158
Period size: 47 Copynumber: 3.8 Consensus size: 48
24426014 AGGATGTAAT
* * *
24426024 GTCGATGCAACGTCCCAGACATGGTCTTACACTGGCTCATC-CATCAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCACATCAA
* * *
24426071 GTCGATGCCATGTCCCAGACATGGTCTTACACTAACT-ATCAAAATCGA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATC-ACATCAA
* ** * ** * * *
24426119 GGCTGACACCATGTCCCATACATTTTCTTACACTGGTTC-TCACATCTCTAT
1 GTC-GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCACA--TC-AA
*
24426170 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC
24426208 TCATAATGTG
Statistics
Matches: 104, Mismatches: 26, Indels: 11
0.74 0.18 0.08
Matches are distributed among these distances:
46 3 0.03
47 33 0.32
48 8 0.08
49 28 0.27
50 30 0.29
51 2 0.02
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (48 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCACATCAA
Found at i:24427690 original size:46 final size:46
Alignment explanation
Indices: 24427533--24427704 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
24427523 ATTTGGGCAT
*
24427533 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A-GT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
24427577 CC-AACTCGTTGAGTTGAGTCCGAG-T---TTGTGAGAT-CTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAAC---GC
*
24427621 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
24427669 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
24427705 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 6, Indels: 26
0.77 0.04 0.19
Matches are distributed among these distances:
39 5 0.05
40 4 0.04
42 1 0.01
43 22 0.20
44 3 0.03
46 38 0.35
47 21 0.19
48 3 0.03
50 3 0.03
51 8 0.07
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:24430354 original size:10 final size:10
Alignment explanation
Indices: 24430339--24430368 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
24430329 AGATGAAAGC
24430339 ATTGATGAGA
1 ATTGATGAGA
*
24430349 ATTGATAAGA
1 ATTGATGAGA
24430359 ATTGATGAGA
1 ATTGATGAGA
24430369 GAATACGTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.27, T:0.30
Consensus pattern (10 bp):
ATTGATGAGA
Found at i:24430599 original size:15 final size:15
Alignment explanation
Indices: 24430579--24430647 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
24430569 GTATCTTGGG
24430579 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
24430594 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
24430609 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
24430624 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
24430639 TTTCTTTAT
1 TTTCTTTAT
24430648 TCAGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:24430648 original size:30 final size:30
Alignment explanation
Indices: 24430570--24430649 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
24430560 CATAGTATCG
* * *
24430570 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATCTCTC
* *
24430600 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATCTCTC
24430630 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
24430650 AGTTTTCTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
29 1 0.02
30 41 0.95
31 1 0.02
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATCTCTC
Found at i:24431720 original size:46 final size:46
Alignment explanation
Indices: 24431667--24431839 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
24431657 TTGGGCATCT
24431667 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCC
* * * * *
24431713 GAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--GATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCGTCC
* * *
24431760 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCC
* *
24431806 GAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
24431840 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 63 0.59
47 31 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCC
Found at i:24431798 original size:93 final size:93
Alignment explanation
Indices: 24431660--24431831 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
24431650 GGGATATTTG
* * * *
24431660 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
24431725 TTGAGTCCAAGTTCGTGAGATGTAACTA
66 TTGAGTCCAAGTTCGTGAGATGTAACTA
* *
24431753 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
*
24431818 TTGAGTCCGAGTTC
66 TTGAGTCCAAGTTC
24431832 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCAAGTTCGTGAGATGTAACTA
Found at i:24435846 original size:27 final size:27
Alignment explanation
Indices: 24435816--24435993 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
24435806 ATATTGAGTC
* * * *
24435816 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
24435843 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
24435870 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
24435898 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
24435925 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
24435952 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
24435979 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24435994 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:24435955 original size:82 final size:81
Alignment explanation
Indices: 24435837--24435992 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
24435827 TGCTATATAA
* *
24435837 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
24435902 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
24435919 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
24435983 CACTTAGTGC
65 CACTTAGTGC
24435993 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:24438627 original size:20 final size:19
Alignment explanation
Indices: 24438581--24438627 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 19
24438571 GTAATTCATG
24438581 TTTAATTGCTGAATGGAGT
1 TTTAATTGCTGAATGGAGT
* *
24438600 TTTGAATTGGTAGAATTGAGT
1 TTT-AATTGCT-GAATGGAGT
24438621 TTTAATT
1 TTTAATT
24438628 TTAAGAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 3 0.12
20 10 0.42
21 11 0.46
ACGTcount: A:0.28, C:0.02, G:0.23, T:0.47
Consensus pattern (19 bp):
TTTAATTGCTGAATGGAGT
Found at i:24453841 original size:15 final size:16
Alignment explanation
Indices: 24453813--24453842 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
24453803 GTTGGAATAA
24453813 ATTGAATGTGAGTTAT
1 ATTGAATGTGAGTTAT
24453829 ATTGAAT-TGAGTTA
1 ATTGAATGTGAGTTA
24453843 AATCCATTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.33, C:0.00, G:0.23, T:0.43
Consensus pattern (16 bp):
ATTGAATGTGAGTTAT
Found at i:24454180 original size:25 final size:25
Alignment explanation
Indices: 24454127--24454206 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
24454117 TACTGATTTT
* **
24454127 AGCTCTTATGAGCTTACCAATACTT-
1 AGCTCCTATGAGCTTACCGTTA-TTC
24454152 AGCTCCTATGAGCTTACCGTTATTC
1 AGCTCCTATGAGCTTACCGTTATTC
*** * *
24454177 AGCTTGGAGGAGCTTATCGTTATTC
1 AGCTCCTATGAGCTTACCGTTATTC
24454202 AGCTC
1 AGCTC
24454207 GGAGGTGTAA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
24 2 0.04
25 43 0.96
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.35
Consensus pattern (25 bp):
AGCTCCTATGAGCTTACCGTTATTC
Found at i:24454210 original size:25 final size:25
Alignment explanation
Indices: 24454161--24454211 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
24454151 TAGCTCCTAT
*
24454161 GAGCTTACCGTTATTCAGCTTGGAG
1 GAGCTTACCGTTATTCAGCTCGGAG
*
24454186 GAGCTTATCGTTATTCAGCTCGGAG
1 GAGCTTACCGTTATTCAGCTCGGAG
24454211 G
1 G
24454212 TGTAACATCC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.31
Consensus pattern (25 bp):
GAGCTTACCGTTATTCAGCTCGGAG
Found at i:24463402 original size:19 final size:19
Alignment explanation
Indices: 24463337--24463405 Score: 111
Period size: 19 Copynumber: 3.6 Consensus size: 19
24463327 CGGGTAAGGG
*
24463337 ACACAGGCGTGTCCCAAGC
1 ACACGGGCGTGTCCCAAGC
* *
24463356 ACATGGGCATGTCCCAAGC
1 ACACGGGCGTGTCCCAAGC
24463375 ACACGGGCGTGTCCCAAGC
1 ACACGGGCGTGTCCCAAGC
24463394 ACACGGGCGTGT
1 ACACGGGCGTGT
24463406 GCATTGCCTC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 45 1.00
ACGTcount: A:0.23, C:0.33, G:0.30, T:0.13
Consensus pattern (19 bp):
ACACGGGCGTGTCCCAAGC
Found at i:24465791 original size:16 final size:17
Alignment explanation
Indices: 24465769--24465812 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 17
24465759 CATCTCATAA
24465769 TCATTTCTCATATTTTC
1 TCATTTCTCATATTTTC
*
24465786 -CATTTC-AATATTTTC
1 TCATTTCTCATATTTTC
24465801 TCA--TCTCATATT
1 TCATTTCTCATATT
24465813 CATTTCTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
14 2 0.09
15 13 0.57
16 8 0.35
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.55
Consensus pattern (17 bp):
TCATTTCTCATATTTTC
Found at i:24465801 original size:43 final size:43
Alignment explanation
Indices: 24465754--24465839 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 43
24465744 TCATATTTCA
24465754 TTTCTCATCTCATAATCATTTCTCATATTT-TCCATTTCAATAT
1 TTTCTCATCTCATAATCATTTCTCATATTTGT-CATTTCAATAT
* * *
24465797 TTTCTCATCTCATATTCATTTCTTATCTTTGTCATTTCAATAT
1 TTTCTCATCTCATAATCATTTCTCATATTTGTCATTTCAATAT
24465840 CAATCACATA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
43 38 0.97
44 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.01, T:0.53
Consensus pattern (43 bp):
TTTCTCATCTCATAATCATTTCTCATATTTGTCATTTCAATAT
Found at i:24467043 original size:3 final size:3
Alignment explanation
Indices: 24467037--24467070 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
24467027 TTTTTTTCTT
* *
24467037 TTA TTA TAA CTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
24467071 AACATATAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Done.