Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 82 of 362
Found at i:25706089 original size:85 final size:86
Alignment explanation
Indices: 25705903--25706082 Score: 231
Period size: 85 Copynumber: 2.1 Consensus size: 86
25705893 TGTGTTTGCT
* * *
25705903 TGTAAGACCACATCTGGGA-TGTTGGCAT-AGATATATGTGGTTACGTGTAAGACCATGTCTGGG
1 TGTAAGACCACGTCTGAGACT-TTGTCATCA-ATATATGTGGTTACGTGTAAGACCATGTCTGGG
*
25705966 ACATCAAAATCATATTTGATTCA
64 AAATCAAAATCATATTTGATTCA
*
25705989 TGTAAGACCACGTCTGAGACTTTGTCATCAATATATGTGGTTA-GTGTAAGACCATGTTTGGGAA
1 TGTAAGACCACGTCTGAGACTTTGTCATCAATATATGTGGTTACGTGTAAGACCATGTCTGGGAA
**** *
25706053 ATTGGCATCATATTTGATTCG
66 ATCAAAATCATATTTGATTCA
25706074 TGTAAGACC
1 TGTAAGACC
25706083 CTGTCTGGGA
Statistics
Matches: 82, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
85 44 0.54
86 36 0.44
87 2 0.02
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (86 bp):
TGTAAGACCACGTCTGAGACTTTGTCATCAATATATGTGGTTACGTGTAAGACCATGTCTGGGAA
ATCAAAATCATATTTGATTCA
Found at i:25710000 original size:27 final size:26
Alignment explanation
Indices: 25709978--25710166 Score: 204
Period size: 27 Copynumber: 7.0 Consensus size: 26
25709968 TCATTTTGCC
25709978 CTACAGGGGTATTTCAATAATTTTACA
1 CTACAGGGGTATTTC-ATAATTTTACA
*
25710005 CTACAAGGGTATTTCGATAATTTTACA
1 CTACAGGGGTATTTC-ATAATTTTACA
25710032 CTACAGGGGTATTTCGATAATTTTACA
1 CTACAGGGGTATTTC-ATAATTTTACA
*
25710059 CTACAGGGGTATTTTCGTAATTTTACA
1 CTACAGGGGTA-TTTCATAATTTTACA
*
25710086 CTACAGGGTTATTTTCATAATTTTACA
1 CTACAGGGGTA-TTTCATAATTTTACA
* * *
25710113 -AACTGGGGGTATTTTGATAATTTTACA
1 CTAC-AGGGGTA-TTTCATAATTTTACA
*
25710140 --AGCTGGGGGTATTTCAGTAATTTTACA
1 CTA-C-AGGGGTATTTCA-TAATTTTACA
25710167 AATTGAGGGT
Statistics
Matches: 147, Mismatches: 11, Indels: 8
0.89 0.07 0.05
Matches are distributed among these distances:
26 7 0.05
27 136 0.93
28 4 0.03
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.39
Consensus pattern (26 bp):
CTACAGGGGTATTTCATAATTTTACA
Found at i:25710012 original size:54 final size:54
Alignment explanation
Indices: 25709953--25710112 Score: 146
Period size: 54 Copynumber: 3.0 Consensus size: 54
25709943 TCATTTACCC
* * *
25709953 ACAAGGGCAAAATAG-TCATTTTGCCCTACAGGGGTATTTCAATAATTTTACACT
1 ACAAGGG-AAAATAGATAATTTTACACTACAGGGGTATTTCAATAATTTTACACT
* ** * *
25710007 ACAAGGGTATTTCGATAATTTTACACTACAGGGGTATTTCGATAATTTTACACT
1 ACAAGGGAAAATAGATAATTTTACACTACAGGGGTATTTCAATAATTTTACACT
* *** * *
25710061 ACAGGGGTATTTTCG-TAATTTTACACTACAGGGTTATTTTC-ATAATTTTACA
1 ACAAGGG-AAAATAGATAATTTTACACTACAGGGGTA-TTTCAATAATTTTACA
25710113 AACTGGGGGT
Statistics
Matches: 91, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
53 3 0.03
54 79 0.87
55 9 0.10
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (54 bp):
ACAAGGGAAAATAGATAATTTTACACTACAGGGGTATTTCAATAATTTTACACT
Found at i:25710099 original size:81 final size:81
Alignment explanation
Indices: 25709978--25710220 Score: 248
Period size: 81 Copynumber: 3.0 Consensus size: 81
25709968 TCATTTTGCC
*
25709978 CTACAGGGGTATTTCAATAATTTTACACTACAAGGGTA-TTTCGATAATTTTACACTAC-AGGGG
1 CTACAGGGGTATTTCAATAATTTTACACTACAAGGGTATTTTC-ATAATTTTACA-AACTAGGGG
25710041 TATTTCGATAATTTTACA
64 TATTTCGATAATTTTACA
* *
25710059 CTACAGGGGTATTTTC-GTAATTTTACACTAC-AGGGTTATTTTCATAATTTTACAAACTGGGGG
1 CTACAGGGGTA-TTTCAATAATTTTACACTACAAGGG-TATTTTCATAATTTTACAAACTAGGGG
*
25710122 TATTTTGATAATTTTACA
64 TATTTCGATAATTTTACA
* * * ** ** *
25710140 --AGCTGGGGGTATTTCAGTAATTTTACA-AATTGAGGGTATTTTGGTAATTTTACAAACTGGGG
1 CTA-C-AGGGGTATTTCAATAATTTTACACTA-CAAGGGTATTTTCATAATTTTACAAACTAGGG
* *
25710202 GTATTTTGATAATATTACA
63 GTATTTCGATAATTTTACA
25710221 AATTGGAGTA
Statistics
Matches: 143, Mismatches: 10, Indels: 18
0.84 0.06 0.11
Matches are distributed among these distances:
79 1 0.01
80 12 0.08
81 118 0.83
82 12 0.08
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.40
Consensus pattern (81 bp):
CTACAGGGGTATTTCAATAATTTTACACTACAAGGGTATTTTCATAATTTTACAAACTAGGGGTA
TTTCGATAATTTTACA
Found at i:25710122 original size:54 final size:53
Alignment explanation
Indices: 25709982--25710246 Score: 206
Period size: 54 Copynumber: 4.9 Consensus size: 53
25709972 TTTGCCCTAC
* **
25709982 AGGGGTATTTCAATAATTTTACACTAC-AAGGGTA-TTTCGATAATTTTACACTAC-
1 AGGGGTATTTC-ATAATTTTACA-AACTGGGGGTATTTTCG-TAATTTTACA-TACT
* *
25710036 AGGGGTATTTCGATAATTTTACACTAC-AGGGGTATTTTCGTAATTTTACACTAC-
1 AGGGGTATTTC-ATAATTTTACA-AACTGGGGGTATTTTCGTAATTTTACA-TACT
*
25710090 AGGGTTATTTTCATAATTTTACAAACTGGGGGTATTTT-GATAATTTTACA-AGCT
1 AGGGGTA-TTTCATAATTTTACAAACTGGGGGTATTTTCG-TAATTTTACATA-CT
* * * * *
25710144 GGGGGTATTTCAGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTCA-TAATTTTACAAACTGGGGGTATTTTCGTAATTTTACATACT
* * * * *
25710198 GGGGGTATTTTGATAATATTACAAA-TTGGAGTA-TTTCGGTAATTTTACA
1 AGGGGTA-TTTCATAATTTTACAAACTGGGGGTATTTTC-GTAATTTTACA
25710247 ATCCGAGGTC
Statistics
Matches: 185, Mismatches: 15, Indels: 23
0.83 0.07 0.10
Matches are distributed among these distances:
52 4 0.02
53 25 0.14
54 141 0.76
55 15 0.08
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (53 bp):
AGGGGTATTTCATAATTTTACAAACTGGGGGTATTTTCGTAATTTTACATACT
Found at i:25710167 original size:27 final size:27
Alignment explanation
Indices: 25709983--25710247 Score: 165
Period size: 27 Copynumber: 9.9 Consensus size: 27
25709973 TTGCCCTACA
* * *
25709983 GGGGTATTTCAATAATTTTACACTAC-A
1 GGGGTATTTCAGTAATTTTACA-AACTG
* * *
25710010 AGGGTATTTC-GATAATTTTACACTAC-A
1 GGGGTATTTCAG-TAATTTTACA-AACTG
* *
25710037 GGGGTATTTC-GATAATTTTACACTAC-A
1 GGGGTATTTCAG-TAATTTTACA-AACTG
* *
25710064 GGGGTATTTTC-GTAATTTTACACTAC-A
1 GGGGTA-TTTCAGTAATTTTACA-AACTG
*
25710091 GGGTTATTTTCA-TAATTTTACAAACTG
1 GGGGTA-TTTCAGTAATTTTACAAACTG
* *
25710118 GGGGTATTT-TGATAATTTTACAAGCTG
1 GGGGTATTTCAG-TAATTTTACAAACTG
*
25710145 GGGGTATTTCAGTAATTTTACAAATTG
1 GGGGTATTTCAGTAATTTTACAAACTG
* **
25710172 AGGGTATTTTGGTAATTTTACAAACTG
1 GGGGTATTTCAGTAATTTTACAAACTG
* * *
25710199 GGGGTATTT-TGATAATATTACAAA-TT
1 GGGGTATTTCAG-TAATTTTACAAACTG
* *
25710225 GGAGTATTTCGGTAATTTTACAA
1 GGGGTATTTCAGTAATTTTACAA
25710248 TCCGAGGTCT
Statistics
Matches: 206, Mismatches: 23, Indels: 19
0.83 0.09 0.08
Matches are distributed among these distances:
26 25 0.12
27 175 0.85
28 6 0.03
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (27 bp):
GGGGTATTTCAGTAATTTTACAAACTG
Found at i:25710221 original size:81 final size:80
Alignment explanation
Indices: 25709983--25710247 Score: 245
Period size: 81 Copynumber: 3.3 Consensus size: 80
25709973 TTGCCCTACA
* * * *
25709983 GGGGTATTTCAATAATTTTAC-ACTACAAGGG-TA-TTTCGATAATTTTACACTAC-AGGGGTAT
1 GGGGTATTTC-GTAATTTTACAAATAC-AGGGTTATTTTC-ATAATTTTACA-AACTGGGGGTAT
* * * **
25710044 TTCGATAATTTTACACTACA
62 TTTGATAATATTACA-AATG
*
25710064 GGGGTATTTTCGTAATTTTAC-ACTACAGGGTTATTTTCATAATTTTACAAACTGGGGGTATTTT
1 GGGGTA-TTTCGTAATTTTACAAATACAGGGTTATTTTCATAATTTTACAAACTGGGGGTATTTT
* *
25710128 GATAATTTTACAAGCTG
65 GATAATATTACAA-ATG
** **
25710145 GGGGTATTTCAGTAATTTTACAAATTGAGGG-TATTTTGGTAATTTTACAAACTGGGGGTATTTT
1 GGGGTATTTC-GTAATTTTACAAATACAGGGTTATTTTCATAATTTTACAAACTGGGGGTATTTT
*
25710209 GATAATATTACAAATT
65 GATAATATTACAAATG
*
25710225 GGAGTATTTCGGTAATTTTACAA
1 GGGGTATTTC-GTAATTTTACAA
25710248 TCCGAGGTCT
Statistics
Matches: 159, Mismatches: 18, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
80 32 0.20
81 113 0.71
82 14 0.09
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (80 bp):
GGGGTATTTCGTAATTTTACAAATACAGGGTTATTTTCATAATTTTACAAACTGGGGGTATTTTG
ATAATATTACAAATG
Found at i:25716466 original size:15 final size:15
Alignment explanation
Indices: 25716434--25716462 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
25716424 ATTTTCTATG
25716434 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
25716449 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
25716463 ATTTTTGTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:25717000 original size:15 final size:15
Alignment explanation
Indices: 25716980--25717010 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
25716970 AAATATGAAA
25716980 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
25716995 GATATGTTTTGTATT
1 GATATGTTTTGGATT
25717010 G
1 G
25717011 GAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:25719196 original size:28 final size:28
Alignment explanation
Indices: 25719157--25719231 Score: 105
Period size: 28 Copynumber: 2.7 Consensus size: 28
25719147 TGGCCCCTTT
*
25719157 AGGCCCAATCACATTCATATGGCCTATC
1 AGGCCCAATCACATTCATATGGCCCATC
* * *
25719185 GGGCCCAATCACATTCGTATGGCCCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
*
25719213 AGGACCAATCACATTCATA
1 AGGCCCAATCACATTCATA
25719232 GTCATGTAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:25719470 original size:16 final size:16
Alignment explanation
Indices: 25719449--25719480 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
25719439 CCTAACTTCT
25719449 AGCTTTTCGGCATTTC
1 AGCTTTTCGGCATTTC
*
25719465 AGCTTTTCGGTATTTC
1 AGCTTTTCGGCATTTC
25719481 GAGATTTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.22, G:0.19, T:0.47
Consensus pattern (16 bp):
AGCTTTTCGGCATTTC
Found at i:25724271 original size:25 final size:25
Alignment explanation
Indices: 25724243--25724293 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
25724233 CCCTTATAAT
* * *
25724243 GTGAAAATAACCTTTTTGCCCCTAG
1 GTGAAAATAACCATTATACCCCTAG
*
25724268 GTGAAAATGACCATTATACCCCTAG
1 GTGAAAATAACCATTATACCCCTAG
25724293 G
1 G
25724294 GTTATGTTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (25 bp):
GTGAAAATAACCATTATACCCCTAG
Found at i:25724349 original size:10 final size:10
Alignment explanation
Indices: 25724334--25724372 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
25724324 TGCTTTTTTA
25724334 CATGATATGC
1 CATGATATGC
25724344 CATGATATGC
1 CATGATATGC
*
25724354 ACATAATATGC
1 -CATGATATGC
*
25724365 CATCATAT
1 CATGATAT
25724373 ATTCACATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.36, C:0.21, G:0.13, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:25724362 original size:21 final size:21
Alignment explanation
Indices: 25724333--25724372 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
25724323 CTGCTTTTTT
* *
25724333 ACATGATATGCCATGATATGC
1 ACATAATATGCCATCATATGC
25724354 ACATAATATGCCATCATAT
1 ACATAATATGCCATCATAT
25724373 ATTCACATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.30
Consensus pattern (21 bp):
ACATAATATGCCATCATATGC
Found at i:25724454 original size:25 final size:25
Alignment explanation
Indices: 25724419--25724489 Score: 115
Period size: 25 Copynumber: 2.8 Consensus size: 25
25724409 AGGGAGTGCT
*
25724419 AAAAGGTCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
25724444 AAAAGGGCTTTGCCCTAGTGTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
25724469 AAAAGGGCTTTGCCCCAGTTT
1 AAAAGGGCTTTGCCCCAGTTT
25724490 TTAAAAGAGG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:25732283 original size:10 final size:10
Alignment explanation
Indices: 25732268--25732306 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
25732258 TGCTTTTGTA
25732268 CATGATATGC
1 CATGATATGC
25732278 CATGATATGC
1 CATGATATGC
*
25732288 ACATGATATCC
1 -CATGATATGC
25732299 CATGATAT
1 CATGATAT
25732307 ATTCACATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:25732292 original size:21 final size:21
Alignment explanation
Indices: 25732267--25732306 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
25732257 CTGCTTTTGT
*
25732267 ACATGATATGCCATGATATGC
1 ACATGATATCCCATGATATGC
25732288 ACATGATATCCCATGATAT
1 ACATGATATCCCATGATAT
25732307 ATTCACATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (21 bp):
ACATGATATCCCATGATATGC
Found at i:25732363 original size:29 final size:25
Alignment explanation
Indices: 25732343--25732398 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
25732333 ATATGAACGG
25732343 AAGGGCTTTGCCCCAGTTTATTGAA
1 AAGGGCTTTGCCCCAGTTTATTGAA
*
25732368 AAGGGGTTTGCCCCAG-TTATT-AA
1 AAGGGCTTTGCCCCAGTTTATTGAA
25732391 AAGAGGCT
1 AAG-GGCT
25732399 AGGCCTCCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 5 0.18
24 8 0.29
25 15 0.54
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (25 bp):
AAGGGCTTTGCCCCAGTTTATTGAA
Found at i:25735808 original size:28 final size:26
Alignment explanation
Indices: 25735752--25735809 Score: 71
Period size: 28 Copynumber: 2.2 Consensus size: 26
25735742 AAAATTATAT
* *
25735752 TTAATAATTTATTTTAAAATATTTCA
1 TTAATAATTTATTTTAAAATAATTAA
*
25735778 TTAATAATTTAGGTTTTAAATTAATTAA
1 TTAATAATTTA--TTTTAAAATAATTAA
25735806 TTAA
1 TTAA
25735810 ATTGGATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 11 0.41
28 16 0.59
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (26 bp):
TTAATAATTTATTTTAAAATAATTAA
Found at i:25739272 original size:7 final size:7
Alignment explanation
Indices: 25739260--25739293 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
25739250 CATATTTCTA
25739260 CTCATCC
1 CTCATCC
25739267 CTCATCC
1 CTCATCC
25739274 CTCATCC
1 CTCATCC
25739281 CTCATCC
1 CTCATCC
25739288 CTCATC
1 CTCATC
25739294 ATTCATCATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.15, C:0.56, G:0.00, T:0.29
Consensus pattern (7 bp):
CTCATCC
Found at i:25739299 original size:14 final size:14
Alignment explanation
Indices: 25739260--25739300 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
25739250 CATATTTCTA
*
25739260 CTCATCCCTCATCC
1 CTCATCACTCATCC
*
25739274 CTCATCCCTCATCC
1 CTCATCACTCATCC
*
25739288 CTCATCATTCATC
1 CTCATCACTCATC
25739301 ATGCTCTCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.17, C:0.51, G:0.00, T:0.32
Consensus pattern (14 bp):
CTCATCACTCATCC
Found at i:25739299 original size:21 final size:21
Alignment explanation
Indices: 25739260--25739300 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
25739250 CATATTTCTA
*
25739260 CTCATCCCTCATCCCTCATCC
1 CTCATCCCTCATCACTCATCC
*
25739281 CTCATCCCTCATCATTCATC
1 CTCATCCCTCATCACTCATC
25739301 ATGCTCTCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.51, G:0.00, T:0.32
Consensus pattern (21 bp):
CTCATCCCTCATCACTCATCC
Found at i:25739814 original size:14 final size:14
Alignment explanation
Indices: 25739795--25739826 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
25739785 GGTACATGGC
25739795 TGTGTCATAGCCCA
1 TGTGTCATAGCCCA
*
25739809 TGTGTCATAGCCCG
1 TGTGTCATAGCCCA
25739823 TGTG
1 TGTG
25739827 GACAATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.16, C:0.25, G:0.28, T:0.31
Consensus pattern (14 bp):
TGTGTCATAGCCCA
Found at i:25745436 original size:43 final size:43
Alignment explanation
Indices: 25745387--25745488 Score: 116
Period size: 43 Copynumber: 2.4 Consensus size: 43
25745377 TCCTAGATAT
* * * *
25745387 GGTCTTACATGTTATCAC-ATATCGATGCCATTGTCCCACATAG
1 GGTCTTACATGTAATCACAATA-CAATGCCAATGTCCCACACAG
* * * *
25745430 GGTCTTACACGAAATCACAATACAATGCCAATGTCCCATACAT
1 GGTCTTACATGTAATCACAATACAATGCCAATGTCCCACACAG
25745473 GGTCTTACATGTAATC
1 GGTCTTACATGTAATC
25745489 CATGTCCCAG
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
43 45 0.94
44 3 0.06
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (43 bp):
GGTCTTACATGTAATCACAATACAATGCCAATGTCCCACACAG
Found at i:25745570 original size:50 final size:50
Alignment explanation
Indices: 25745488--25745663 Score: 177
Period size: 50 Copynumber: 3.6 Consensus size: 50
25745478 TACATGTAAT
* *
25745488 CCATGTCCCAGACATGGTCTTACACTAACTCTCTTATATCGAGGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCTTATATCGAAGCCGATG
* * * * * * *
25745538 ACATATCCCAGACATGGTCTTACACTGGCTCTCCTCT-TTTTG-TGCTGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCT-CT-TATATCGAAGCCGATG
* * *
25745588 CCATGTCCCAGACATGGTCTTACACT-G-ACAC--ATATC-AAGTCGATG
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCTTATATCGAAGCCGATG
25745633 CCATGTCCCAGACATGGTCTTACACTAGCTC
1 CCATGTCCCAGACATGGTCTTACACTAGCTC
25745664 ACATGTATTG
Statistics
Matches: 102, Mismatches: 18, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
45 33 0.32
46 1 0.01
47 2 0.02
48 1 0.01
49 1 0.01
50 58 0.57
51 5 0.05
52 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACACTAGCTCTCTTATATCGAAGCCGATG
Found at i:25748775 original size:28 final size:29
Alignment explanation
Indices: 25748702--25748789 Score: 94
Period size: 28 Copynumber: 3.1 Consensus size: 29
25748692 AGCATGGCTG
* * * *
25748702 CCAGATACAGA-AA-ATGTGACAGAGTCA
1 CCAGATACAGATAATTTGTGGCATAGCCA
*
25748729 CCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAATTTGTGGCA-TAGCCA
25748758 CCAGA-ACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAATTTGTGGCATAGCCA
25748786 CCAG
1 CCAG
25748790 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
27 12 0.24
28 25 0.49
29 14 0.27
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (29 bp):
CCAGATACAGATAATTTGTGGCATAGCCA
Found at i:25755018 original size:44 final size:43
Alignment explanation
Indices: 25754874--25755044 Score: 166
Period size: 43 Copynumber: 4.0 Consensus size: 43
25754864 AGCTCGTACA
* * ** * *
25754874 ATGCAAATGTCTCAGATGTGGTCTTACATGTAATCACATATCG
1 ATGCTAATGTCCCAGACATGGTCTTACACGAAATCACATATCG
* * * * *
25754917 ATGCCATTGTCCCAGACAGGGTCTTACAC-AAA-CTCATATACC
1 ATGCTAATGTCCCAGACATGGTCTTACACGAAATCACATAT-CG
* *
25754959 ATGCTGATGTCCCAGACATGGTCTTACACGTAAATCACAAATCG
1 ATGCTAATGTCCCAGACATGGTCTTACACG-AAATCACATATCG
* * *
25755003 ATGCTAACGTTCCAGACGTGGTCTTACACGAAATCACATATC
1 ATGCTAATGTCCCAGACATGGTCTTACACGAAATCACATATC
25755045 AGAATCCTAT
Statistics
Matches: 102, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
41 6 0.06
42 28 0.27
43 33 0.32
44 30 0.29
45 5 0.05
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (43 bp):
ATGCTAATGTCCCAGACATGGTCTTACACGAAATCACATATCG
Found at i:25758092 original size:31 final size:31
Alignment explanation
Indices: 25758052--25758134 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
25758042 TCAGTCTCGA
*
25758052 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCAAAAAT
*
25758082 CATATCACTGGGCTGAAGCCTTTTCAAAAAT
1 CATATCACTGGGCCGAAGCCTTTTCAAAAAT
25758113 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
25758135 ACTATAAGCG
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
30 17 0.35
31 32 0.65
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCAAAAAT
Found at i:25758382 original size:25 final size:25
Alignment explanation
Indices: 25758354--25758423 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
25758344 CTCTTTTAAT
*
25758354 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
25758379 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
25758404 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
25758424 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:25758658 original size:27 final size:27
Alignment explanation
Indices: 25758628--25758826 Score: 265
Period size: 27 Copynumber: 7.4 Consensus size: 27
25758618 GGGGTAAAAT
* * * *
25758628 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
25758655 GGTAATTCTACCCTAC-GGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
25758681 AGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
25758708 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
25758735 AATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
25758762 GGTAATTCTACCTTATAGGGTTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
25758789 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
25758816 GATAATTCTAC
1 GGTAATTCTAC
25758827 AAATCGAGAG
Statistics
Matches: 150, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 22 0.15
27 128 0.85
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:25758840 original size:81 final size:81
Alignment explanation
Indices: 25758674--25758849 Score: 230
Period size: 81 Copynumber: 2.2 Consensus size: 81
25758664 ACCCTACGGG
* *
25758674 GTATTTCAGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATA
1 GTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATA
** *
25758739 ATTCTACCCTATAGGG
66 ATTCTACCAAATAGGA
* * *
25758755 GTATTTCGGTAATTCTACCTTA-TAGGGTTATTTCGGTAATTCTACCCTACAGGGGTATTTCGAT
1 GTATTTCGGTAATTCTACCCTACAAGGG-TATTTCGGTAATTCTACCCTACAGGGGTATTTCAAT
*
25758819 AATTCTA-CAAATCGAGA
65 AATTCTACCAAATAG-GA
*
25758836 GTATTTCGATAATT
1 GTATTTCGGTAATT
25758850 TCACAAATCA
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
80 8 0.10
81 75 0.90
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.38
Consensus pattern (81 bp):
GTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATA
ATTCTACCAAATAGGA
Found at i:25758841 original size:54 final size:52
Alignment explanation
Indices: 25758630--25758849 Score: 190
Period size: 54 Copynumber: 4.1 Consensus size: 52
25758620 GGTAAAATGG
* * * * ** * *
25758630 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACAAT-CAGGGTATTTCAA
* * **
25758683 TATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACAAT-CA-GGGTATTTCAA
* * **
25758737 TAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCTTAT-AGGGTTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTA-C-AATCAGGG-TATTTCAA
* * *
25758791 TAATTCTACCCTACAGGGGTATTTCGATAATTCTACAAATCGAGAGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC-AATC-AGGGTATTTCAA
25758845 TAATT
1 TAATT
25758850 TCACAAATCA
Statistics
Matches: 142, Mismatches: 19, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
53 43 0.30
54 94 0.66
55 4 0.03
56 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (52 bp):
TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACAATCAGGGTATTTCAA
Found at i:25758866 original size:27 final size:27
Alignment explanation
Indices: 25758804--25759013 Score: 180
Period size: 27 Copynumber: 7.8 Consensus size: 27
25758794 TTCTACCCTA
* * *
25758804 CAGGGGTATTTCGATAATTCTACAAAT
1 CAGGGGTATTTTGATAATTTTACAAAG
* * * *
25758831 C-GAGAGTATTTCGATAATTTCACAAAT
1 CAG-GGGTATTTTGATAATTTTACAAAG
*
25758858 CAGGGGTATTTTGGTAATTTTAC-AAG
1 CAGGGGTATTTTGATAATTTTACAAAG
*
25758884 CTAGGGGTATTTTGTTAATTTTAC-AAG
1 C-AGGGGTATTTTGATAATTTTACAAAG
*
25758911 CTAGGGGTATTTTGGTAATTTTACAAA-
1 C-AGGGGTATTTTGATAATTTTACAAAG
*
25758938 CTAGGGGTATTTT-AGTAATTTTACAAAC
1 C-AGGGGTATTTTGA-TAATTTTACAAAG
* ** *
25758966 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAGGGGTATTTTGATAATTTTACAAAG
*
25758993 CAAGGGTATTTT-AGTAATTTT
1 CAGGGGTATTTTGA-TAATTTT
25759014 GTAAATCGAG
Statistics
Matches: 159, Mismatches: 16, Indels: 16
0.83 0.08 0.08
Matches are distributed among these distances:
26 4 0.03
27 151 0.95
28 4 0.03
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
CAGGGGTATTTTGATAATTTTACAAAG
Found at i:25758868 original size:81 final size:81
Alignment explanation
Indices: 25758699--25758876 Score: 218
Period size: 81 Copynumber: 2.2 Consensus size: 81
25758689 TACCCTACAA
** * *
25758699 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCGG
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCAAATAGGAGTATTTCGA
**
25758764 TAATTCTACCTTATAG
66 TAATTCTACCAAATAG
* * *
25758780 GGTTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTA-CAAATCGAGAGTATTTCG
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCAAATAG-GAGTATTTCG
25758844 ATAATT-T-CACAAATCAG
65 ATAATTCTAC-CAAAT-AG
*
25758861 GGGTATTTTGGTAATT
1 GGGTATTTCGGTAATT
25758877 TTACAAGCTA
Statistics
Matches: 83, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
79 1 0.01
80 8 0.10
81 74 0.89
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (81 bp):
GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCAAATAGGAGTATTTCGA
TAATTCTACCAAATAG
Found at i:25758977 original size:81 final size:81
Alignment explanation
Indices: 25758804--25759013 Score: 233
Period size: 81 Copynumber: 2.6 Consensus size: 81
25758794 TTCTACCCTA
* * * * * * * * *
25758804 CAGGGGTATTTCGATAATTCTACAAATCGAGAGTATTTCGATAATTTCACAAATCAGGGGTATTT
1 CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAATCAGGGGTATTT
* *
25758869 TGGTAATTTTACAAGC
66 TAGTAATTTTACAAAC
* * * * *
25758885 TAGGGGTATTTTGTTAATTTTACAAGCTAGGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATT
1 CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAATC-AGGGGTATT
25758949 TTAGTAATTTTACAAAC
65 TTAGTAATTTTACAAAC
** *
25758966 CAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
1 CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTT
25759014 GTAAATCGAG
Statistics
Matches: 105, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
80 1 0.01
81 104 0.99
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (81 bp):
CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAATCAGGGGTATTT
TAGTAATTTTACAAAC
Found at i:25759025 original size:27 final size:27
Alignment explanation
Indices: 25758915--25759120 Score: 132
Period size: 27 Copynumber: 7.6 Consensus size: 27
25758905 TACAAGCTAG
* * *
25758915 GGGTATTTTGGTAATTTTACAAA-CTA
1 GGGTATTTTAGTAATTTTATAAATCGA
* *
25758941 GGGGTATTTTAGTAATTTTACAAA-CCA
1 -GGGTATTTTAGTAATTTTATAAATCGA
* * * *
25758968 GGGGTATTTTGGTAATTTTGTAAACCAA
1 -GGGTATTTTAGTAATTTTATAAATCGA
*
25758996 GGGTATTTTAGTAATTTTGTAAATCGA
1 GGGTATTTTAGTAATTTTATAAATCGA
** *
25759023 GGGTA--AAACGATAATTCTATAAATCGA
1 GGGTATTTTA-G-TAATTTTATAAATCGA
*** * *
25759050 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTATTTTAGTAATTTTATAAATCGA
* * * *
25759077 GGGTACTTTGGTAATTTTATAATTTGA
1 GGGTATTTTAGTAATTTTATAAATCGA
* *
25759104 GGGCATTTCAGTAATTT
1 GGGTATTTTAGTAATTT
25759121 GGTAAACTAA
Statistics
Matches: 149, Mismatches: 25, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
25 1 0.01
26 1 0.01
27 143 0.96
28 3 0.02
29 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTATAAATCGA
Found at i:25759027 original size:54 final size:54
Alignment explanation
Indices: 25758804--25759013 Score: 226
Period size: 54 Copynumber: 3.9 Consensus size: 54
25758794 TTCTACCCTA
* * * * * * * * *
25758804 CAGGGGTATTTCGATAATTCTACAAATCGAGAGTA-TTTCGATAATTTCACAAAT
1 CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAG-TAATTTTACAAAC
* * * *
25758858 CAGGGGTATTTTGGTAATTTTACAAGCTAGGGGTATTTT-GTTAATTTTACAAGC
1 CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAG-TAATTTTACAAAC
* * *
25758912 TAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAAC
**
25758966 CAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
1 CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTT
25759014 GTAAATCGAG
Statistics
Matches: 133, Mismatches: 21, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
54 129 0.97
55 4 0.03
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTACAAAC
Found at i:25762063 original size:47 final size:47
Alignment explanation
Indices: 25762004--25762475 Score: 795
Period size: 47 Copynumber: 10.1 Consensus size: 47
25761994 GAAATGATAG
*
25762004 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
25762051 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
25762098 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
25762145 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
25762192 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
25762239 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
25762286 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGT-A
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
25762332 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
25762379 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
25762425 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
25762472 TAAG
1 TAAG
25762476 TCCCGAAGGG
Statistics
Matches: 409, Mismatches: 14, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
46 85 0.21
47 324 0.79
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:25762650 original size:37 final size:37
Alignment explanation
Indices: 25762594--25762672 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
25762584 CCGAGCTCTA
* * *
25762594 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
25762631 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
25762668 AAGAC
1 AAGAC
25762673 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:25764566 original size:43 final size:43
Alignment explanation
Indices: 25764519--25764707 Score: 369
Period size: 43 Copynumber: 4.4 Consensus size: 43
25764509 TTGGTTTTCA
25764519 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
25764562 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
25764605 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
25764648 GCACTAAGTGTGCGGGCGATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
25764691 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
25764708 TTGAAATGCA
Statistics
Matches: 145, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 145 1.00
ACGTcount: A:0.22, C:0.15, G:0.36, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:25764724 original size:29 final size:29
Alignment explanation
Indices: 25764689--25764760 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
25764679 GTTGTGAGAT
* * *
25764689 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGAGAG-TTGAAAGTACA
*
25764718 TGGCACTAAGTGTGAGAGTTTAAAGTACA
1 TGGCACTAAGTGTGAGAGTTGAAAGTACA
25764747 TGGCACTAAGTGTG
1 TGGCACTAAGTGTG
25764761 TGTGGTTGAT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 5 0.13
29 33 0.87
ACGTcount: A:0.28, C:0.14, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGAGAGTTGAAAGTACA
Found at i:25765195 original size:40 final size:40
Alignment explanation
Indices: 25765072--25765228 Score: 133
Period size: 40 Copynumber: 3.9 Consensus size: 40
25765062 TCGAATGATG
* *
25765072 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCT-AGTGACTATA
* * * *
25765112 TCCGGACTAAGAT-CCGAAGGCATTGGTGCGAGCT-ACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCTAG-TGACTATA
*
25765152 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-TATA
1 TCCGGGCTAAGTCCCGAAG-GCATTCGTGCTAGTGACTATA
* * * * *
25765192 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAG-GCATTCGTGCTAGTGAC
25765229 GTGTATTCGG
Statistics
Matches: 95, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
39 1 0.01
40 74 0.78
41 20 0.21
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGACTATA
Found at i:25768690 original size:47 final size:47
Alignment explanation
Indices: 25768627--25768911 Score: 437
Period size: 47 Copynumber: 6.1 Consensus size: 47
25768617 GAAATGATAG
* *
25768627 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
25768674 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
25768721 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
25768768 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
25768815 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
25768861 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
25768908 TAAG
1 TAAG
25768912 TCCCGAAGGG
Statistics
Matches: 220, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 40 0.18
47 180 0.82
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:25769088 original size:37 final size:37
Alignment explanation
Indices: 25769030--25769108 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
25769020 CCGAGCTCTA
* * *
25769030 AAGACCCGATGACTACATGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
* *
25769067 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
25769104 AAGAC
1 AAGAC
25769109 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
Found at i:25772944 original size:48 final size:48
Alignment explanation
Indices: 25772820--25772949 Score: 152
Period size: 48 Copynumber: 2.7 Consensus size: 48
25772810 CATATCGATG
* * ** * *
25772820 CCATGTCTTAGACATGGTCTTACACGAAATCATATATCGATGCCAACG
1 CCATGTCATAGACATGGTCTTACATGGGATCACATATCGATGCCAACA
* * * *
25772868 CCATATCATAGATATGGTCTTACTTGGGATCACATATCGATGCCAATA
1 CCATGTCATAGACATGGTCTTACATGGGATCACATATCGATGCCAACA
**
25772916 CCATGTCCCAGACATGGTCTTACATGGGATCACA
1 CCATGTCATAGACATGGTCTTACATGGGATCACA
25772950 CATAACCCTA
Statistics
Matches: 67, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 67 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.28
Consensus pattern (48 bp):
CCATGTCATAGACATGGTCTTACATGGGATCACATATCGATGCCAACA
Found at i:25783634 original size:44 final size:42
Alignment explanation
Indices: 25783571--25783727 Score: 154
Period size: 43 Copynumber: 3.7 Consensus size: 42
25783561 TGAGTTATCG
* * ** *
25783571 TGTAAGACCACGTCTGGGACGTTTTCTTCGAT-TTAAGATTTACA
1 TGTAAGACCATGTCTGGGACATTGGCATC-ATATT-AGATTT-CA
*
25783615 TGTAAGACCATGTCTGGGACATTGGCATCATATTTGATTTCA
1 TGTAAGACCATGTCTGGGACATTGGCATCATATTAGATTTCA
* * * *
25783657 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATTCGATTACA
1 TGTAAGACCATGTCTGGGACATTGGCATC-ATATTAGATTTCA
* * *
25783700 TATAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCATGTCTGGGACATTGGCAT
25783728 TGTACAAGCT
Statistics
Matches: 96, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
42 29 0.30
43 41 0.43
44 26 0.27
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATTGGCATCATATTAGATTTCA
Found at i:25783671 original size:42 final size:43
Alignment explanation
Indices: 25783607--25783727 Score: 156
Period size: 43 Copynumber: 2.8 Consensus size: 43
25783597 TTCGATTTAA
* *
25783607 GATTTACATGTAAGACCATGTCTGGGACATTGGCATC-ATATTT
1 GATTT-CATGTAAGACCCTGTCTGGGACATTGGCATCGATATTC
*
25783650 GATTTCATGTAAGACCCTGTCTGGGACAGTGGCATCGATATTC
1 GATTTCATGTAAGACCCTGTCTGGGACATTGGCATCGATATTC
* * *
25783693 GATTACATATAAGACCAC-GTCTGGGACGTTGGCAT
1 GATTTCATGTAAGACC-CTGTCTGGGACATTGGCAT
25783728 TGTACAAGCT
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
42 29 0.42
43 39 0.57
44 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (43 bp):
GATTTCATGTAAGACCCTGTCTGGGACATTGGCATCGATATTC
Found at i:25784874 original size:28 final size:29
Alignment explanation
Indices: 25784831--25784916 Score: 104
Period size: 29 Copynumber: 3.0 Consensus size: 29
25784821 TACATACTTA
* *
25784831 CATATGGCCCACTAGGCCC-AATCTCATT
1 CATATGGCCCATTAGGCCCAAATCACATT
25784859 CATATGGCCCATTAGGCCCAAATCACATT
1 CATATGGCCCATTAGGCCCAAATCACATT
* * * *
25784888 CATACGGCCCATCAGTCCCGAATCA-ATT
1 CATATGGCCCATTAGGCCCAAATCACATT
25784916 C
1 C
25784917 CAAGCCATGT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
28 22 0.43
29 29 0.57
ACGTcount: A:0.28, C:0.35, G:0.14, T:0.23
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAAATCACATT
Found at i:25785945 original size:13 final size:13
Alignment explanation
Indices: 25785910--25785934 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25785900 AAGTATTTGC
25785910 AAAAATAAAAAAT
1 AAAAATAAAAAAT
25785923 AAAAATAAAAAA
1 AAAAATAAAAAA
25785935 ACAAAACAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:25787741 original size:33 final size:33
Alignment explanation
Indices: 25787704--25787769 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
25787694 GAGGAAAGGC
*
25787704 CTTATTACACCCCAAATATAAAATAATAATTTA
1 CTTATTACACCCCAAATAAAAAATAATAATTTA
25787737 CTTATTACACCCCAAATAAAAAATAATAATTTA
1 CTTATTACACCCCAAATAAAAAATAATAATTTA
25787770 AAATCAAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.50, C:0.18, G:0.00, T:0.32
Consensus pattern (33 bp):
CTTATTACACCCCAAATAAAAAATAATAATTTA
Found at i:25788773 original size:28 final size:29
Alignment explanation
Indices: 25788736--25788826 Score: 107
Period size: 29 Copynumber: 3.2 Consensus size: 29
25788726 AAGTCTACAT
*
25788736 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
* * *
25788764 TCATTCATATGGCCCATTATGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
*
25788793 ACATTCATATGGCCCATCT-GGCCCTAATC
1 ACATTCATATGGCCCA-CTAGGCCCAAATC
25788822 A-ATTC
1 ACATTC
25788827 CAAGCCATGT
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
28 24 0.45
29 28 0.53
30 1 0.02
ACGTcount: A:0.27, C:0.33, G:0.13, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCACTAGGCCCAAATC
Found at i:25790998 original size:31 final size:31
Alignment explanation
Indices: 25790960--25791038 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
25790950 ATTTAAGGTT
*
25790960 ACTGGGCCAAAGCCTTTTCATAAATCAAATC
1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
* *
25790991 ACTGGGCCGAAGCTTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCAAATC
*
25791022 ACTAGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
25791039 ATTGTAAATG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.28
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCAAATC
Found at i:25791122 original size:42 final size:42
Alignment explanation
Indices: 25791062--25791153 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
25791052 TGGCCCATAG
*
25791062 GCCCATTTCAATAACACATGAAATATCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
*
25791104 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
25791146 GCCCATTT
1 GCCCATTT
25791154 GGGGAGACTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (42 bp):
GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
Found at i:25791343 original size:26 final size:26
Alignment explanation
Indices: 25791298--25791421 Score: 160
Period size: 26 Copynumber: 4.8 Consensus size: 26
25791288 CCTCTTTAAT
25791298 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* * ***
25791323 AACTAGGGCATAAGCCATTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
* **
25791349 AACTAGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
25791375 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
25791401 AACTGGGGCATAAGCCGTTTT
1 AACTGGGGCATAAGCCCTTTT
25791422 GCACTTCCTC
Statistics
Matches: 87, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
25 9 0.10
26 78 0.90
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:25791496 original size:20 final size:20
Alignment explanation
Indices: 25791471--25791545 Score: 111
Period size: 20 Copynumber: 3.9 Consensus size: 20
25791461 TTATGAATTC
*
25791471 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
25791491 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
25791511 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
25791531 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
25791546 TCCCACGTAT
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
18 8 0.15
20 43 0.81
21 2 0.04
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:25791502 original size:11 final size:11
Alignment explanation
Indices: 25791471--25791526 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
25791461 TTATGAATTC
25791471 ATCATGTGCAT
1 ATCATGTGCAT
* *
25791482 TTCA--TACAT
1 ATCATGTGCAT
25791491 ATCATGTGCAT
1 ATCATGTGCAT
*
25791502 ATCA--TACAT
1 ATCATGTGCAT
25791511 ATCATGTGCAT
1 ATCATGTGCAT
25791522 ATCAT
1 ATCAT
25791527 ATCAATCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:25791543 original size:9 final size:10
Alignment explanation
Indices: 25791488--25791544 Score: 57
Period size: 9 Copynumber: 5.8 Consensus size: 10
25791478 GCATTTCATA
25791488 CATATCATGT
1 CATATCATGT
*
25791498 GCATATCAT-A
1 -CATATCATGT
25791508 CATATCATGT
1 CATATCATGT
*
25791518 GCATATCATAT
1 -CATATCATGT
25791529 CA-ATCATGT
1 CATATCATGT
25791538 -ATATCAT
1 CATATCAT
25791545 ATCCCACGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 1 0.03
9 19 0.49
10 2 0.05
11 17 0.44
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (10 bp):
CATATCATGT
Found at i:25792280 original size:27 final size:26
Alignment explanation
Indices: 25792245--25792321 Score: 109
Period size: 27 Copynumber: 2.9 Consensus size: 26
25792235 GGGCATATTC
* *
25792245 GTCATTTTACCATACAGGGGTATTACG
1 GTCACTTTACCCTACAGGGGT-TTACG
25792272 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGG-TTTACG
*
25792299 GTCACTTTACCCTACAAGGGTTT
1 GTCACTTTACCCTACAGGGGTTT
25792322 TCCCGTCTTT
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
26 3 0.07
27 42 0.91
28 1 0.02
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.32
Consensus pattern (26 bp):
GTCACTTTACCCTACAGGGGTTTACG
Found at i:25792420 original size:27 final size:27
Alignment explanation
Indices: 25792390--25792475 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
25792380 GTAAATCTAC
25792390 AAACCAAGGGTATTT-TAGTAATTTTGT
1 AAACCAAGGGTATTTCTA-TAATTTTGT
*
25792417 AAACCAATGGTATTTCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
* *
25792443 AGAAAGTCAAGGGTATTTCTATAACTTTGT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
25792473 AAA
1 AAA
25792476 TAAGGGGTAT
Statistics
Matches: 50, Mismatches: 4, Indels: 9
0.79 0.06 0.14
Matches are distributed among these distances:
26 1 0.02
27 21 0.42
28 8 0.16
29 19 0.38
30 1 0.02
ACGTcount: A:0.36, C:0.09, G:0.15, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:25792503 original size:27 final size:27
Alignment explanation
Indices: 25792478--25792603 Score: 173
Period size: 27 Copynumber: 4.7 Consensus size: 27
25792468 TTTGTAAATA
25792478 AGGGGTATTTTGGTAATTTTACAAA-T
1 AGGGGTATTTTGGTAATTTTACAAACT
* * *
25792504 TGAGGGTATTTCGGTAATTTCACAAACT
1 AG-GGGTATTTTGGTAATTTTACAAACT
* *
25792532 AGTGGTATTTCGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
* *
25792559 ATGGGCATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
25792586 AGGGGTATTTTGGTAATT
1 AGGGGTATTTTGGTAATT
25792604 CTATCTTATA
Statistics
Matches: 86, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 83 0.97
28 2 0.02
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:25792539 original size:54 final size:54
Alignment explanation
Indices: 25792478--25792636 Score: 187
Period size: 54 Copynumber: 2.9 Consensus size: 54
25792468 TTTGTAAATA
25792478 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACT
* * * * * *
25792532 AGTGGTATTTCGGTAATTTTACAAACT-ATGGGCATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAATTGA-GGGTATTTCGGTAATTTCACAAACT
* ** * *
25792586 AGGGGTATTTTGGTAATTCTATCTTATAG-GGGTATTTCAGTAATTTCACAA
1 AGGGGTATTTTGGTAATTTTA-CAAATTGAGGGTATTTCGGTAATTTCACAA
25792637 TCGAGGGTAA
Statistics
Matches: 85, Mismatches: 17, Indels: 6
0.79 0.16 0.06
Matches are distributed among these distances:
53 1 0.01
54 82 0.96
55 2 0.02
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (54 bp):
AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACT
Found at i:25792620 original size:81 final size:81
Alignment explanation
Indices: 25792484--25792636 Score: 195
Period size: 81 Copynumber: 1.9 Consensus size: 81
25792474 AATAAGGGGT
* * *
25792484 ATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACTAGTGGTATTTCGGTAAT
1 ATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAACTAGGGGTATTTCAGTAAT
*
25792549 TTTACAAACTATGGGC
66 TTCACAAACTATGGGC
* **
25792565 ATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAA-TTCTATCTTA-TAGGGGTATTTCAGT
1 ATTTTGGTAATTTTACAAA-TAGAGGGTATTTCGGTAATTTC-A-CAAACTAGGGGTATTTCAGT
25792627 AATTTCACAA
63 AATTTCACAA
25792637 TCGAGGGTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
80 3 0.05
81 55 0.89
82 4 0.06
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.41
Consensus pattern (81 bp):
ATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAACTAGGGGTATTTCAGTAAT
TTCACAAACTATGGGC
Found at i:25792643 original size:27 final size:27
Alignment explanation
Indices: 25792478--25792636 Score: 153
Period size: 27 Copynumber: 5.9 Consensus size: 27
25792468 TTTGTAAATA
* *
25792478 AGGGGTATTTTGGTAATTTTACAAA-T
1 AGGGGTATTTCGGTAATTTCACAAACT
*
25792504 TGAGGGTATTTCGGTAATTTCACAAACT
1 AG-GGGTATTTCGGTAATTTCACAAACT
* *
25792532 AGTGGTATTTCGGTAATTTTACAAACT
1 AGGGGTATTTCGGTAATTTCACAAACT
* * * *
25792559 ATGGGCATTTTGGTAATTTTACAAACT
1 AGGGGTATTTCGGTAATTTCACAAACT
* **
25792586 AGGGGTATTTTGGTAA-TTCTATCTTA-T
1 AGGGGTATTTCGGTAATTTC-A-CAAACT
*
25792613 AGGGGTATTTCAGTAATTTCACAA
1 AGGGGTATTTCGGTAATTTCACAA
25792637 TCGAGGGTAA
Statistics
Matches: 109, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
26 4 0.04
27 98 0.90
28 7 0.06
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTCGGTAATTTCACAAACT
Found at i:25792680 original size:27 final size:27
Alignment explanation
Indices: 25792635--25792832 Score: 213
Period size: 27 Copynumber: 7.3 Consensus size: 27
25792625 GTAATTTCAC
25792635 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
25792662 AA-CTG-GGGATAAAATGGTAATTTTGTA
1 AATC-GAGGG-TAAAACGGTAATTTTGTA
*
25792689 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * * *
25792716 AATCAAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
25792743 AATCGAGGGTAAAACGGAAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * *
25792770 AATCGTGGGTGAAACGGTAATTCTAG-A
1 AATCGAGGGTAAAACGGTAATT-TTGTA
* * * **
25792797 AATCGATGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTTTGTA
25792824 AATCGAGGG
1 AATCGAGGG
25792833 CATTTCAGTA
Statistics
Matches: 142, Mismatches: 23, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
26 4 0.03
27 132 0.93
28 6 0.04
ACGTcount: A:0.38, C:0.09, G:0.25, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:25792756 original size:81 final size:82
Alignment explanation
Indices: 25792635--25792832 Score: 260
Period size: 81 Copynumber: 2.4 Consensus size: 82
25792625 GTAATTTCAC
* * * * *
25792635 AATCGAGGGTAAAACGGTAATTTTGTAAA-CTG-GGGATAAAATGGTAATTTTGTAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGATAAAACGGAAATTTTGTAAATCGAGGG
25792698 TAAAACGGTAATTCT-GTA
65 TAAAACGGTAATTCTAG-A
* *
25792716 AATCAAGGGTAAAATGGTAATTCTATAAATCGAGGG-TAAAACGGAAATTTTGTAAATCGTGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGATAAAACGGAAATTTTGTAAATCGAGGGT
*
25792780 GAAACGGTAATTCTAGA
66 AAAACGGTAATTCTAGA
* *
25792797 AATCGATGGTAAAATGGTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
25792833 CATTTCAGTA
Statistics
Matches: 103, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
81 98 0.95
82 5 0.05
ACGTcount: A:0.38, C:0.09, G:0.25, T:0.28
Consensus pattern (82 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGATAAAACGGAAATTTTGTAAATCGAGGGT
AAAACGGTAATTCTAGA
Found at i:25792846 original size:81 final size:81
Alignment explanation
Indices: 25792678--25792852 Score: 226
Period size: 81 Copynumber: 2.2 Consensus size: 81
25792668 GGATAAAATG
*
25792678 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAATGGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAATGGTAATTCTACA
* *
25792743 AATCGAGGGTAAAACG
66 AATCGAGGGCAAAACA
* * * * *
25792759 GAAATTTTGTAAATCGTGGGTGAAACGGTAATTCTAG-AAATCGATGGTAAAATGGTAATTCTAC
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCT-GTAAATCAAGGGTAAAATGGTAATTCTAC
***
25792823 AAATCGAGGGCATTTCA
65 AAATCGAGGGCAAAACA
*
25792840 GTAATTTGGTAAA
1 GTAATTTTGTAAA
25792853 CTAAAGTATT
Statistics
Matches: 80, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 79 0.99
82 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.30
Consensus pattern (81 bp):
GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAATGGTAATTCTACA
AATCGAGGGCAAAACA
Found at i:25797107 original size:20 final size:20
Alignment explanation
Indices: 25797060--25797129 Score: 79
Period size: 20 Copynumber: 3.5 Consensus size: 20
25797050 TATGGAAATT
* *
25797060 TAATTCTATTCATATAAACTG
1 TAATTC-ATTCATATAACCAG
25797081 TAATTCATTCATATAACCAG
1 TAATTCATTCATATAACCAG
* *
25797101 TAGTTCATAT-GTATAACCAG
1 TAATTCAT-TCATATAACCAG
25797121 TAATTCATT
1 TAATTCATT
25797130 AGTAATAACA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
19 1 0.02
20 35 0.81
21 7 0.16
ACGTcount: A:0.37, C:0.16, G:0.07, T:0.40
Consensus pattern (20 bp):
TAATTCATTCATATAACCAG
Found at i:25797141 original size:20 final size:20
Alignment explanation
Indices: 25797080--25797145 Score: 75
Period size: 20 Copynumber: 3.3 Consensus size: 20
25797070 CATATAAACT
25797080 GTAATTCATTCA-TATAACCA
1 GTAATTCATT-AGTATAACCA
*
25797100 GTAGTTCA-TATGTATAACCA
1 GTAATTCATTA-GTATAACCA
25797120 GTAATTCATTAGTAATAA-CA
1 GTAATTCATTAGT-ATAACCA
25797140 GTAATT
1 GTAATT
25797146 TATCCGTATC
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 32 0.80
21 6 0.15
ACGTcount: A:0.39, C:0.14, G:0.11, T:0.36
Consensus pattern (20 bp):
GTAATTCATTAGTATAACCA
Found at i:25797337 original size:24 final size:25
Alignment explanation
Indices: 25797302--25797358 Score: 82
Period size: 24 Copynumber: 2.3 Consensus size: 25
25797292 AACTCCTCCC
25797302 GAGCTGATAAAT-AGTAAGCTCTATT
1 GAGCTGATAAATGA-TAAGCTCTATT
*
25797327 GATCTGA-AAATGATAAGCTCTATT
1 GAGCTGATAAATGATAAGCTCTATT
25797351 GAGCTGAT
1 GAGCTGAT
25797359 TCAATAAGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 21 0.75
25 7 0.25
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (25 bp):
GAGCTGATAAATGATAAGCTCTATT
Found at i:25797389 original size:23 final size:23
Alignment explanation
Indices: 25797363--25797415 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
25797353 GCTGATTCAA
*
25797363 TAAGCTCCAATGAGCTGAAACGG
1 TAAGCTCCAACGAGCTGAAACGG
** * *
25797386 TAAGCTCTTACGAGCTTAATCGG
1 TAAGCTCCAACGAGCTGAAACGG
25797409 TAAGCTC
1 TAAGCTC
25797416 ATCCGAGCTG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (23 bp):
TAAGCTCCAACGAGCTGAAACGG
Found at i:25797422 original size:23 final size:23
Alignment explanation
Indices: 25797374--25797425 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
25797364 AAGCTCCAAT
*
25797374 GAGCTGAAACGGTAAGCTCTTAC
1 GAGCTGAAACGGTAAGCTCATAC
* * *
25797397 GAGCTTAATCGGTAAGCTCATCC
1 GAGCTGAAACGGTAAGCTCATAC
25797420 GAGCTG
1 GAGCTG
25797426 TGGTGAGTCT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (23 bp):
GAGCTGAAACGGTAAGCTCATAC
Found at i:25797909 original size:18 final size:18
Alignment explanation
Indices: 25797883--25797926 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
25797873 CAACTTCTCG
*
25797883 TAATTACAATGAAAATAA
1 TAATAACAATGAAAATAA
** *
25797901 TAATAACAATTCAAGTAA
1 TAATAACAATGAAAATAA
25797919 TAATAACA
1 TAATAACA
25797927 TAATGAAAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.59, C:0.09, G:0.05, T:0.27
Consensus pattern (18 bp):
TAATAACAATGAAAATAA
Found at i:25798856 original size:29 final size:29
Alignment explanation
Indices: 25798819--25798893 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
25798809 AATCATATTC
* *
25798819 ATATAGCCCATTAGGCCCAAACCACCTGT
1 ATATGGCCCATTAGGCCCAAACCACATGT
* * *
25798848 ATATGGCCCATTAAGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAACCACATGT
25798877 ATATGGCCCATTAGGCC
1 ATATGGCCCATTAGGCC
25798894 TAATCACATT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.31, C:0.31, G:0.15, T:0.24
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAACCACATGT
Found at i:25798908 original size:28 final size:28
Alignment explanation
Indices: 25798809--25798908 Score: 103
Period size: 29 Copynumber: 3.5 Consensus size: 28
25798799 CATCAAGCCC
* *
25798809 AATCATATTCATATAGCCCATTAGGCCCA
1 AATCACATTCATATGGCCCATTAGG-CCA
* * *
25798838 AACCACCTGT-ATATGGCCCATTAAGCCCA
1 AATCACAT-TCATATGGCCCATT-AGGCCA
* *
25798867 AATCACATTTATATGGCCCATTAGGCCT
1 AATCACATTCATATGGCCCATTAGGCCA
25798895 AATCACATTCATAT
1 AATCACATTCATAT
25798909 TCATGCTCAC
Statistics
Matches: 58, Mismatches: 10, Indels: 7
0.77 0.13 0.09
Matches are distributed among these distances:
28 18 0.31
29 37 0.64
30 3 0.05
ACGTcount: A:0.33, C:0.28, G:0.11, T:0.28
Consensus pattern (28 bp):
AATCACATTCATATGGCCCATTAGGCCA
Found at i:25799162 original size:16 final size:17
Alignment explanation
Indices: 25799119--25799167 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 17
25799109 GTAGCCAAAC
25799119 TTTCGGCATTTCGACAT
1 TTTCGGCATTTCGACAT
*
25799136 TTT-GGCTTTTCGAC-T
1 TTTCGGCATTTCGACAT
*
25799151 TTTCGGAATTTCG-CAT
1 TTTCGGCATTTCGACAT
25799167 T
1 T
25799168 CCAGCTTTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
15 5 0.19
16 19 0.70
17 3 0.11
ACGTcount: A:0.14, C:0.20, G:0.18, T:0.47
Consensus pattern (17 bp):
TTTCGGCATTTCGACAT
Found at i:25805674 original size:50 final size:49
Alignment explanation
Indices: 25805563--25805707 Score: 177
Period size: 50 Copynumber: 3.0 Consensus size: 49
25805553 TTGATGTTTT
* * *
25805563 CATATCGATGCCAATGCCAAGTCTCAGACATGGTTTTACATGGGAT-CA
1 CATATCGATGCCAATGCCAAGTCCCAAACATGGTCTTACATGGGATCCA
* * * *
25805611 CATAACGATGCCAATGTCATGTCCCAAACATAGTCTTACATGGGATCACA
1 CATATCGATGCCAATGCCAAGTCCCAAACATGGTCTTACATGGGATC-CA
* *
25805661 CATATCGATGCCAATGCCACA-TCCCAAATATGGTCTTATATGGGATC
1 CATATCGATGCCAATGCCA-AGTCCCAAACATGGTCTTACATGGGATC
25805708 TCATCAACCC
Statistics
Matches: 81, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
48 39 0.48
50 42 0.52
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (49 bp):
CATATCGATGCCAATGCCAAGTCCCAAACATGGTCTTACATGGGATCCA
Found at i:25806806 original size:8 final size:8
Alignment explanation
Indices: 25806793--25806817 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
25806783 AACCTTCACA
25806793 CAATCATG
1 CAATCATG
25806801 CAATCATG
1 CAATCATG
25806809 CAATCATG
1 CAATCATG
25806817 C
1 C
25806818 CATAGATCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.28, G:0.12, T:0.24
Consensus pattern (8 bp):
CAATCATG
Found at i:25808398 original size:30 final size:30
Alignment explanation
Indices: 25808363--25808426 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
25808353 CTTACACAAA
* *
25808363 GTCTCATATCGATGATATATCCTAGATATT
1 GTCTCATATCGATGACATATCCCAGATATT
*
25808393 GTCTCATATCGATGCCATATCCCAGATATT
1 GTCTCATATCGATGACATATCCCAGATATT
25808423 GTCT
1 GTCT
25808427 TATACATAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.38
Consensus pattern (30 bp):
GTCTCATATCGATGACATATCCCAGATATT
Found at i:25811682 original size:14 final size:14
Alignment explanation
Indices: 25811663--25811691 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
25811653 CAAGTAAACT
25811663 TATCATTTAATGCA
1 TATCATTTAATGCA
25811677 TATCATTTAATGCA
1 TATCATTTAATGCA
25811691 T
1 T
25811692 GTAAACGTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.45
Consensus pattern (14 bp):
TATCATTTAATGCA
Found at i:25822765 original size:10 final size:11
Alignment explanation
Indices: 25822737--25822767 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
25822727 AAACACAGAA
25822737 AATAATTTTTT
1 AATAATTTTTT
25822748 AATAATTTTTT
1 AATAATTTTTT
25822759 AAT-ATTTTT
1 AATAATTTTT
25822768 CTAACTCAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 6 0.30
11 14 0.70
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
AATAATTTTTT
Found at i:25826853 original size:19 final size:20
Alignment explanation
Indices: 25826829--25826866 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
25826819 TGGTACACCA
25826829 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
25826848 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
25826867 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:25827206 original size:93 final size:93
Alignment explanation
Indices: 25827096--25827266 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
25827086 GCCCCTAAGT
* *
25827096 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
25827161 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
25827189 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
25827254 CGAGTTCGGATGC
66 CGAGTTCGGATGC
25827267 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:25827263 original size:46 final size:46
Alignment explanation
Indices: 25827091--25827263 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
25827081 AACCCGCCCC
* * * *
25827091 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
25827137 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
25827185 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
25827230 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
25827264 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:25833406 original size:19 final size:20
Alignment explanation
Indices: 25833369--25833406 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
25833359 ATAAGGTGGT
25833369 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
25833389 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
25833407 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:25833597 original size:47 final size:48
Alignment explanation
Indices: 25833483--25833654 Score: 164
Period size: 46 Copynumber: 3.7 Consensus size: 48
25833473 CGCCCCTAAG
* * *
25833483 TGAACTCGGACTCAACTCAACGAGCTCGG--G-C-GTTCGCATCCATAAA
1 TGAACTCAGACTCAACTCAACGAGTTCGGATGCCAGTT-ACATCCAT-AA
* *
25833529 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-TCA
1 TGAACTCAGACTCAACTCAACGAGTTCGGATGCC-AGTTACATCCATAA
* * *
25833576 TGAACTCAGACTCAACTCAACGAGTTC--A-GACATTTGCATCCATAA
1 TGAACTCAGACTCAACTCAACGAGTTCGGATGCCAGTTACATCCATAA
*
25833621 GTGAACTCAGACTCAACTCAACGACTTCGGATGC
1 -TGAACTCAGACTCAACTCAACGAGTTCGGATGC
25833655 TCAACCATCC
Statistics
Matches: 105, Mismatches: 10, Indels: 19
0.78 0.07 0.14
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 3 0.03
46 54 0.51
47 27 0.26
48 3 0.03
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (48 bp):
TGAACTCAGACTCAACTCAACGAGTTCGGATGCCAGTTACATCCATAA
Found at i:25833642 original size:93 final size:93
Alignment explanation
Indices: 25833483--25833654 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
25833473 CGCCCCTAAG
* * * * *
25833483 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCA
1 TGAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCAGACTCAACTCA
*
25833548 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGACTTCGGATGCCTAGTTACATCTCA
* * *
25833576 TGAACTCAGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAACTCAGACTCAACTCA
1 TGAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCAGACTCAACTCA
25833641 ACGACTTCGGATGC
66 ACGACTTCGGATGC
25833655 TCAACCATCC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (93 bp):
TGAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCAGACTCAACTCA
ACGACTTCGGATGCCTAGTTACATCTCA
Found at i:25837122 original size:14 final size:14
Alignment explanation
Indices: 25837103--25837136 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
25837093 CACGCCTGTA
*
25837103 TGTCTATGCCCATG
1 TGTCTAAGCCCATG
*
25837117 TGTCTAAGCCCGTG
1 TGTCTAAGCCCATG
25837131 TGTCTA
1 TGTCTA
25837137 CATGGCCACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.15, C:0.26, G:0.24, T:0.35
Consensus pattern (14 bp):
TGTCTAAGCCCATG
Found at i:25843603 original size:40 final size:41
Alignment explanation
Indices: 25843551--25843647 Score: 119
Period size: 40 Copynumber: 2.4 Consensus size: 41
25843541 TATCTCGGTA
*
25843551 TCGCACACTTAGTGCC-TTATATAGCCGAAGCTA-TTCCAAC
1 TCGCACACTTAGTGCCATT-TATAGCCAAAGCTATTTCCAAC
* * **
25843591 TCGCACACTTAGTTCCATTTGTAGCCAAAGCTATTTTGAAC
1 TCGCACACTTAGTGCCATTTATAGCCAAAGCTATTTCCAAC
25843632 -CGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
25843648 AACATAGTCA
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
40 42 0.86
41 7 0.14
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (41 bp):
TCGCACACTTAGTGCCATTTATAGCCAAAGCTATTTCCAAC
Found at i:25853333 original size:15 final size:16
Alignment explanation
Indices: 25853315--25853344 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25853305 ATGGAAACTA
25853315 TGATAT-ATGAAATAT
1 TGATATAATGAAATAT
25853330 TGATATAATGAAATA
1 TGATATAATGAAATA
25853345 AATGATATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (16 bp):
TGATATAATGAAATAT
Found at i:25857317 original size:40 final size:39
Alignment explanation
Indices: 25857255--25857501 Score: 259
Period size: 40 Copynumber: 6.2 Consensus size: 39
25857245 CAGATGATAA
* * *
25857255 CCGGGCTAAGTCCC-AAGAGCATTTGAGCTAGTGGCTA-ACT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-ACTATA-T
*
25857295 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* * *
25857335 CCGGGCTAAGTCCTGAAGGCGTTTGTGCGAGCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
25857375 CCGGGCTAAGTCCCGAAGGCAGTTGTGCGAGTTATTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
25857414 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* * * *
25857454 CCGGACTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATAT
25857494 CC-GGCTAA
1 CCGGGCTAA
25857502 ACTCCGAAGG
Statistics
Matches: 181, Mismatches: 21, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
39 42 0.23
40 134 0.74
41 5 0.03
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:25857500 original size:79 final size:79
Alignment explanation
Indices: 25857295--25857501 Score: 256
Period size: 79 Copynumber: 2.6 Consensus size: 79
25857285 GTGGCTAACT
* * *
25857295 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCTGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* * *
25857360 TGCGAGCTATTATAT
65 TGCAAGCTACTATAA
* *
25857375 CCGGGCTAAGTCCCGAAGGCAGTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
25857439 TGCAAGTTACTATAA
65 TGCAAGCTACTATAA
* * * *
25857454 CCGGACTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATCCGGGCTAA
25857502 ACTCCGAAGG
Statistics
Matches: 109, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
78 1 0.01
79 71 0.65
80 37 0.34
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCAAGCTACTATAA
Found at i:25863595 original size:29 final size:29
Alignment explanation
Indices: 25863527--25863596 Score: 113
Period size: 29 Copynumber: 2.4 Consensus size: 29
25863517 AATCGTATTC
* * *
25863527 ATATGGCCCACTAGGCCCAAATCACCTGT
1 ATATGGCCCATTAGGCCCAAATCACATCT
25863556 ATATGGCCCATTAGGCCCAAATCACATCT
1 ATATGGCCCATTAGGCCCAAATCACATCT
25863585 ATATGGCCCATT
1 ATATGGCCCATT
25863597 TAGCCTAGTC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.24
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATCT
Found at i:25865152 original size:17 final size:17
Alignment explanation
Indices: 25865130--25865163 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
25865120 AAGTTCGAGA
*
25865130 TTTCGAGTTTTTTTGGG
1 TTTCGAGATTTTTTGGG
25865147 TTTCGAGATTTTTTGGG
1 TTTCGAGATTTTTTGGG
25865164 CGTTACAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.09, C:0.06, G:0.29, T:0.56
Consensus pattern (17 bp):
TTTCGAGATTTTTTGGG
Found at i:25876865 original size:180 final size:180
Alignment explanation
Indices: 25876594--25876950 Score: 475
Period size: 180 Copynumber: 2.0 Consensus size: 180
25876584 GAGCTATGGA
* * ** * * *
25876594 ACTCCAAATTAATATCCGTTAACTTTCTCAAAAACTGGACTCACATATATTCTTACCATAAAATT
1 ACTCCAAATTAAGAACCACTAACTTTCCCAAAAACTAGACTCACATATATTCTTACAATAAAATT
* * * * * * *
25876659 TTTAGAATTTTTTGTTTAGCCAATTAGTATAGTTTTTTCATTAAAGT-TACCCCTATTTCATTGT
66 TTCAGAATTTTTGGTATAGCCAATTAGTACAGTTTATTCATTAAA-TATACCACTATTTCACTGT
* *
25876723 CCAACAATTCTGAT-ATTTCTTCACTAACAATTATTTATCTCATGGTACGGG
130 CCAACAATTCTGATCA-TTCTTCACTAAAAATTATTCATCTCATGGTACGGG
*
25876774 ACTCCAAATTAAGAACCACTAATTTTCCCAAAAACTAGACTCACATATATTCTTACAATAAAATT
1 ACTCCAAATTAAGAACCACTAACTTTCCCAAAAACTAGACTCACATATATTCTTACAATAAAATT
* *
25876839 TTCAGAATTTTTGGTATAGCCAATTAGTACAGTTTATTCATTAAATATACCATTGTTTCACTGTC
66 TTCAGAATTTTTGGTATAGCCAATTAGTACAGTTTATTCATTAAATATACCACTATTTCACTGTC
** * *
25876904 TGATAGTTCTGATCATTCTTCACTAAAAATTATTCATCTCATGGTAC
131 CAACAATTCTGATCATTCTTCACTAAAAATTATTCATCTCATGGTAC
25876951 AGATCTCGGA
Statistics
Matches: 152, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
179 1 0.01
180 150 0.99
181 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.39
Consensus pattern (180 bp):
ACTCCAAATTAAGAACCACTAACTTTCCCAAAAACTAGACTCACATATATTCTTACAATAAAATT
TTCAGAATTTTTGGTATAGCCAATTAGTACAGTTTATTCATTAAATATACCACTATTTCACTGTC
CAACAATTCTGATCATTCTTCACTAAAAATTATTCATCTCATGGTACGGG
Found at i:25877795 original size:299 final size:299
Alignment explanation
Indices: 25877257--25877855 Score: 1108
Period size: 299 Copynumber: 2.0 Consensus size: 299
25877247 CACACAACTG
* *
25877257 CTGCTGTCCAAAACTGTTTTATTACAAAATTTCATTTTTACATAATTTCACTTACTCCATTCTAT
1 CTGCTGTCCAAAACTATTTTATTACAAAATTTCATTTTTACATAAATTCACTTACTCCATTCTAT
* *
25877322 CTTACTAAAAGATTCACTCAACTATCGAGCACATTGCTTACAACTTTTCACATTGATATACTTGC
66 CTTACTAAAAGATTCACTCAACTATCAAGCACATTGCTTACAACTTTTCACATCGATATACTTGC
*
25877387 ACTTATTCATCACATAGTCATGTACATATGTGTTTTCACTTAGTAAATTTCCCGCTGAACTCATT
131 ACTTATTCATCACATAGTCATGTACATATGTATTTTCACTTAGTAAATTTCCCGCTGAACTCATT
25877452 GAAATAATAACAAATACCCGGTGGCCTATGCATATACCACCCTTGTAACCGAAGCTCTCTGGTAT
196 GAAATAATAACAAATACCCGGTGGCCTATGCATATACCACCCTTGTAACCGAAGCTCTCTGGTAT
25877517 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAT
261 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAT
25877556 CTGCTGTCCAAAACTATTTTATTACAAAATTTCATTTTTACATAAATTCACTTACTCCATTCTAT
1 CTGCTGTCCAAAACTATTTTATTACAAAATTTCATTTTTACATAAATTCACTTACTCCATTCTAT
*
25877621 CTTACTAAAAGATTCACTCAACTATTAAGCACATTGCTTACAACTTTTCACATCGATATACTTGC
66 CTTACTAAAAGATTCACTCAACTATCAAGCACATTGCTTACAACTTTTCACATCGATATACTTGC
*
25877686 ACTTATTCATCACATAGTCATGTACATATGTATTTTCACTTAGTAAATTTCCTGCTGAACTCATT
131 ACTTATTCATCACATAGTCATGTACATATGTATTTTCACTTAGTAAATTTCCCGCTGAACTCATT
*
25877751 GAAATAATAACAAATACCCGGTGGCCTATGCATATACCACCCTTGTAACCTAAGCTCTCTGGTAT
196 GAAATAATAACAAATACCCGGTGGCCTATGCATATACCACCCTTGTAACCGAAGCTCTCTGGTAT
* *
25877816 GCGTAGTAGCCTGCACTTAGTACTACACATGCGACGTAT
261 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAT
25877855 C
1 C
25877856 AATCTGGAAC
Statistics
Matches: 290, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
299 290 1.00
ACGTcount: A:0.31, C:0.24, G:0.11, T:0.35
Consensus pattern (299 bp):
CTGCTGTCCAAAACTATTTTATTACAAAATTTCATTTTTACATAAATTCACTTACTCCATTCTAT
CTTACTAAAAGATTCACTCAACTATCAAGCACATTGCTTACAACTTTTCACATCGATATACTTGC
ACTTATTCATCACATAGTCATGTACATATGTATTTTCACTTAGTAAATTTCCCGCTGAACTCATT
GAAATAATAACAAATACCCGGTGGCCTATGCATATACCACCCTTGTAACCGAAGCTCTCTGGTAT
GCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAT
Found at i:25877905 original size:49 final size:50
Alignment explanation
Indices: 25877817--25877949 Score: 223
Period size: 49 Copynumber: 2.7 Consensus size: 50
25877807 CTCTGGTATG
* *
25877817 CGTAGTAGCCTGCACTTAGTACTACACATGCGACGTATCAATCTGGAACA
1 CGTAGTAGCCTGCACTTAGTACTACACACGTGACGTATCAATCTGGAACA
* *
25877867 CGTAGTAGCCTGCA-TTAGTACTACACACGTGACTTATCAATCTGGTACA
1 CGTAGTAGCCTGCACTTAGTACTACACACGTGACGTATCAATCTGGAACA
25877916 CGTAGTAGCCTGCACTTAGTACTACACACGTGAC
1 CGTAGTAGCCTGCACTTAGTACTACACACGTGAC
25877950 CTAACCATCT
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
49 45 0.58
50 33 0.42
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (50 bp):
CGTAGTAGCCTGCACTTAGTACTACACACGTGACGTATCAATCTGGAACA
Found at i:25877960 original size:50 final size:50
Alignment explanation
Indices: 25877808--25877972 Score: 224
Period size: 50 Copynumber: 3.3 Consensus size: 50
25877798 ACCTAAGCTC
** * * *
25877808 TCTGGTATGCGTAGTAGCCTGCACTTAGTACTACACATGCGACGTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* *
25877858 TCTGGAACACGTAGTAGCCTGCA-TTAGTACTACACACGTGACTTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* *
25877907 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* *
25877957 TCTGATACACTTAGTA
1 TCTGGTACACGTAGTA
25877973 CTACACACAT
Statistics
Matches: 102, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
49 45 0.44
50 57 0.56
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.27
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
Found at i:25879812 original size:41 final size:40
Alignment explanation
Indices: 25879748--25879934 Score: 232
Period size: 41 Copynumber: 4.6 Consensus size: 40
25879738 TACTCGAATG
*
25879748 ATATCCGGGCTAAGTCCCAAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCT-AGCGACT
*
25879789 ATATCCGGGCTAAGTCTCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCT-AGCGACT
* * *
25879830 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGCGACT
* * *
25879870 ATATCCGGGCTAAGTCCCGAAGGCATTTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGC-TTTTGTGCTAGCGACT
* * *
25879911 ATATCCGGGTTAAGACCAGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
25879935 CTTGTGCGAG
Statistics
Matches: 128, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
39 1 0.01
40 27 0.21
41 99 0.77
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGCGACT
Found at i:25879925 original size:81 final size:82
Alignment explanation
Indices: 25879748--25879934 Score: 238
Period size: 81 Copynumber: 2.3 Consensus size: 82
25879738 TACTCGAATG
* * *
25879748 ATATCCGGGCTAAG-TCCCAAAGGCTTTTGTGCTAAGCGACTATATCCGGGCTAAGTCTCGAAGG
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGG
* *
25879812 CTTTTGTGCTAAGCGACT
65 CTTTTATGCTAAGCGACC
* *
25879830 ACATCCGGACTAAGATCCGAAGGCATTTGTGCT-AGCGACTATATCCGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGC
*
25879894 ATTTTATGCT-AGTGACC
66 -TTTTATGCTAAGCGACC
*
25879911 ATATCCGGGTTAAGA-CCAGAAGGC
1 ATATCCGGGCTAAGATCC-GAAGGC
25879935 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
80 2 0.02
81 53 0.58
82 35 0.38
83 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (82 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGC
TTTTATGCTAAGCGACC
Found at i:25887800 original size:180 final size:180
Alignment explanation
Indices: 25887551--25887885 Score: 530
Period size: 180 Copynumber: 1.9 Consensus size: 180
25887541 ATCTGTTAAT
* * *
25887551 TTTTCCCAGAAACTAGATTCACATATATTCTTACCATAAAATTTTTAGAATTTTTGGTTTAGCCA
1 TTTTCCCAGAAACTAGACTCACATATATTCTTACCATAAAATGTTAAGAATTTTTGGTTTAGCCA
* * ** * *
25887616 ATTAGTACAGTTTATTCATTAAAGT-TACCTCTATTTCACTGTCCGACAGTTCCTATCTTTCTTC
66 ATTAGTACAGCTTATTCATTAAA-TATACCCCTATTTCACTACCCAACAGTTCCGATCTTTCTTC
25887680 ACTAAAAATTC-TTTATCTCATGGTACGGGACTCCAAATTAAGAACCGCTAA
130 ACTAAAAA-TCATTTATCTCATGGTACGGGACTCCAAATTAAGAACCGCTAA
*
25887731 TTTTCCCAGAAACTTGACTCACATATATTCTTACCATAAAATGTTAAGAATTTTTGGTTTAGCCA
1 TTTTCCCAGAAACTAGACTCACATATATTCTTACCATAAAATGTTAAGAATTTTTGGTTTAGCCA
* *
25887796 ATTAGTACCGCTTATTCATTAAATATACCCCTATTTCACTACCCAACAGTTTCGATCTTTCTTCA
66 ATTAGTACAGCTTATTCATTAAATATACCCCTATTTCACTACCCAACAGTTCCGATCTTTCTTCA
25887861 CTAAAAATCATTTATCTCATGGTAC
131 CTAAAAATCATTTATCTCATGGTAC
25887886 AGATCTCGGA
Statistics
Matches: 141, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
179 3 0.02
180 138 0.98
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (180 bp):
TTTTCCCAGAAACTAGACTCACATATATTCTTACCATAAAATGTTAAGAATTTTTGGTTTAGCCA
ATTAGTACAGCTTATTCATTAAATATACCCCTATTTCACTACCCAACAGTTCCGATCTTTCTTCA
CTAAAAATCATTTATCTCATGGTACGGGACTCCAAATTAAGAACCGCTAA
Found at i:25896923 original size:40 final size:40
Alignment explanation
Indices: 25896874--25896967 Score: 120
Period size: 40 Copynumber: 2.4 Consensus size: 40
25896864 TCTCGGTATT
* *
25896874 GCACACTTAGTGCC-TTATATAGCCGAAGCTA-TTCCAACAC
1 GCACACTTAGTGCCATT-TATAGCCAAAGCAATTTCCAAC-C
* *
25896914 GCACACTTAGTGCCATTTGTAGCCAAAGCAATTTCGAACC
1 GCACACTTAGTGCCATTTATAGCCAAAGCAATTTCCAACC
25896954 GCACACTTAGTGCC
1 GCACACTTAGTGCC
25896968 GAACATAGTC
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
40 40 0.83
41 8 0.17
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (40 bp):
GCACACTTAGTGCCATTTATAGCCAAAGCAATTTCCAACC
Found at i:25899585 original size:35 final size:34
Alignment explanation
Indices: 25899540--25899776 Score: 142
Period size: 35 Copynumber: 6.7 Consensus size: 34
25899530 CTCCCTAATT
*
25899540 ATTTCGTCAGTTTATCCGACTAGCGCT-GAGCACA
1 ATTTCATCAGTTTATCCGACTAGCGCTAG-GCACA
** * * *
25899574 ATTTCCATCAGTTTATCTAACTAGTGTTGGGCACA
1 ATTT-CATCAGTTTATCCGACTAGCGCTAGGCACA
* *
25899609 CATTTGC-T-AGTTTGTCCAACTAGCGCT-GAGCACAA
1 -ATTT-CATCAGTTTATCCGACTAGCGCTAG-GCAC-A
* ** * *
25899644 ATATCATTGGTTTATCCAACTAGAGCTAGGCTTACCAA
1 ATTTCATCAGTTTATCCGACTAGCGCTAGGC--A-C-A
** *
25899682 TTATTTCATCAGTTTATCCGACTAGTACTAGGCGCA
1 --ATTTCATCAGTTTATCCGACTAGCGCTAGGCACA
* * *
25899718 ACTTTCATCAGTATATCTGACTAGTGCTAGGCACA
1 A-TTTCATCAGTTTATCCGACTAGCGCTAGGCACA
25899753 TATTT-ATCAGTTTATCCGACTAGC
1 -ATTTCATCAGTTTATCCGACTAGC
25899777 ATTGGGTGCA
Statistics
Matches: 160, Mismatches: 28, Indels: 30
0.73 0.13 0.14
Matches are distributed among these distances:
33 2 0.01
34 44 0.28
35 75 0.47
36 9 0.06
37 2 0.01
38 3 0.02
40 25 0.16
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (34 bp):
ATTTCATCAGTTTATCCGACTAGCGCTAGGCACA
Found at i:25899743 original size:144 final size:144
Alignment explanation
Indices: 25899494--25899757 Score: 363
Period size: 144 Copynumber: 1.8 Consensus size: 144
25899484 CTAGCACTAG
* * * *
25899494 GCACAAATACCATTTGTTTATCCAACTAGAGCTGGGCTCCCTAATTATTTCGTCAGTTTATCCGA
1 GCACAAATACCATTGGTTTATCCAACTAGAGCTAGGCTACCTAATTATTTCATCAGTTTATCCGA
* * * *
25899559 CTAGCGCTGAGCACAATTTCCATCAGTTTATCTAACTAGTGTTGGGCACACATTTGCTAGTTTGT
66 CTAGCACTGAGCACAATTTCCATCAGTATATCTAACTAGTGCTAGGCACACATTTGCTAGTTTGT
25899624 CCAACTAGCGCTGA
131 CCAACTAGCGCTGA
*
25899638 GCACAAATATCATTGGTTTATCCAACTAGAGCTAGGCTTACC-AATTATTTCATCAGTTTATCCG
1 GCACAAATACCATTGGTTTATCCAACTAGAGCTAGGC-TACCTAATTATTTCATCAGTTTATCCG
* * * *
25899702 ACTAGTACT-AGGCGCAACTTT-CATCAGTATATCTGACTAGTGCTAGGCACATATTT
65 ACTAGCACTGA-GCACAA-TTTCCATCAGTATATCTAACTAGTGCTAGGCACACATTT
25899758 ATCAGTTTAT
Statistics
Matches: 104, Mismatches: 13, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
143 1 0.01
144 97 0.93
145 6 0.06
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (144 bp):
GCACAAATACCATTGGTTTATCCAACTAGAGCTAGGCTACCTAATTATTTCATCAGTTTATCCGA
CTAGCACTGAGCACAATTTCCATCAGTATATCTAACTAGTGCTAGGCACACATTTGCTAGTTTGT
CCAACTAGCGCTGA
Found at i:25901993 original size:47 final size:47
Alignment explanation
Indices: 25901895--25902022 Score: 139
Period size: 47 Copynumber: 2.7 Consensus size: 47
25901885 AATCAATAAG
* ** * * ** *
25901895 TACCTATACCATGACCTGTAGCCAAATCAATGTAACTTATCCCGGAG
1 TACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCCCAAAA
* *
25901942 TACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCCTCTCAAAA
1 TACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCCCAAAA
* * *
25901989 TACCTATATCATGGACCATTGCCAAATCAAGGTA
1 TACCTATACCATGGCCCATAGCCAAATCAAGGTA
25902023 TTATTCGCAC
Statistics
Matches: 68, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.24
Consensus pattern (47 bp):
TACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCCCAAAA
Found at i:25904672 original size:40 final size:40
Alignment explanation
Indices: 25904582--25904802 Score: 196
Period size: 40 Copynumber: 5.5 Consensus size: 40
25904572 ACCCAAGTAT
* * ** * *
25904582 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCAGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
25904620 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCAGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
25904660 CTTCAAGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCAGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
** * * * *
25904700 CTTCAGGTTTTGGCCCAGATATAGTAACTCGCACAAATGC
1 CTTCAGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
25904740 CTTC-GGATCCTAGTCCGGATATAGTCACTTAGCACAAAAGC
1 CTTCAGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAATGC
* *
25904781 GTTCGGGACTTAGCCCGGATAT
1 CTTCAGGACTTAGCCCGGATAT
25904803 CATTCGAATA
Statistics
Matches: 144, Mismatches: 34, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
38 11 0.08
39 17 0.12
40 88 0.61
41 25 0.17
42 3 0.02
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCAGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:25909138 original size:17 final size:17
Alignment explanation
Indices: 25909116--25909152 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
25909106 CGTGTAAGCT
25909116 GACCGTGTGTCATACAC
1 GACCGTGTGTCATACAC
25909133 GACCGTGTGTCATACAC
1 GACCGTGTGTCATACAC
25909150 GAC
1 GAC
25909153 TGAGACACAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (17 bp):
GACCGTGTGTCATACAC
Found at i:25911710 original size:34 final size:34
Alignment explanation
Indices: 25911672--25911750 Score: 104
Period size: 34 Copynumber: 2.3 Consensus size: 34
25911662 ATATCAGTTC
* * *
25911672 GGCCTTAGCCTATTTCAGTAATAGTAGCAGTCTG
1 GGCCTAAGCCCATTCCAGTAATAGTAGCAGTCTG
* * *
25911706 GGCCTGAGCCCGTTCCAGTAATAGTAGTAGTCTG
1 GGCCTAAGCCCATTCCAGTAATAGTAGCAGTCTG
25911740 GGCCTAAGCCC
1 GGCCTAAGCCC
25911751 GTTTAACATT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.27
Consensus pattern (34 bp):
GGCCTAAGCCCATTCCAGTAATAGTAGCAGTCTG
Found at i:25911751 original size:34 final size:34
Alignment explanation
Indices: 25911687--25911753 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
25911677 TAGCCTATTT
*
25911687 CAGTAATAGTAGCAGTCTGGGCCTGAGCCCGTTC
1 CAGTAATAGTAGCAGTCTGGGCCTAAGCCCGTTC
*
25911721 CAGTAATAGTAGTAGTCTGGGCCTAAGCCCGTT
1 CAGTAATAGTAGCAGTCTGGGCCTAAGCCCGTT
25911754 TAACATTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.25
Consensus pattern (34 bp):
CAGTAATAGTAGCAGTCTGGGCCTAAGCCCGTTC
Found at i:25918613 original size:34 final size:34
Alignment explanation
Indices: 25918575--25918657 Score: 130
Period size: 34 Copynumber: 2.4 Consensus size: 34
25918565 ATATCAGTTA
* *
25918575 GGCCTTAGCCTATTTCAGTAATAGTAGCAGTCTG
1 GGCCTAAGCCCATTTCAGTAATAGTAGCAGTCTG
* *
25918609 GGCCTAAGCCCATTCCAGTAATAGTAGCAGTCTT
1 GGCCTAAGCCCATTTCAGTAATAGTAGCAGTCTG
25918643 GGCCTAAGCCCATTT
1 GGCCTAAGCCCATTT
25918658 AACATTTCAG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 44 1.00
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (34 bp):
GGCCTAAGCCCATTTCAGTAATAGTAGCAGTCTG
Found at i:25933563 original size:40 final size:39
Alignment explanation
Indices: 25933505--25933722 Score: 287
Period size: 40 Copynumber: 5.5 Consensus size: 39
25933495 CGGATGATAA
*
25933505 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATA-T
* *
25933545 CCAGGCTAAGTCCCGAAGGAATTTGTGCGAGATACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
25933585 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
25933625 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* * *
25933665 CCGGGCTAAGTCCCGAAGGAATTTGAGCGAGTAGCTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATAT
*
25933705 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
25933723 TACTTGGTTG
Statistics
Matches: 161, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 17 0.11
40 142 0.88
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:25934667 original size:14 final size:14
Alignment explanation
Indices: 25934648--25934681 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
25934638 ATTCACTATA
25934648 AATTAACCAGAGAT
1 AATTAACCAGAGAT
25934662 AATTAACCAGAGAT
1 AATTAACCAGAGAT
25934676 AATTAA
1 AATTAA
25934682 AAACAAACGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.24
Consensus pattern (14 bp):
AATTAACCAGAGAT
Found at i:25941607 original size:40 final size:40
Alignment explanation
Indices: 25941552--25941769 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
25941542 CGGATGATAA
* *
25941552 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
25941592 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
25941632 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
25941672 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGATACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
25941712 CCGGGCTAAGTCCCGAAGGAATTTGAGCGAG-TAGCTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
25941752 CC-GGCTAAATCCTGAAGG
1 CCGGGCTAAGTCCCGAAGG
25941770 TACTTGGTTG
Statistics
Matches: 162, Mismatches: 14, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
39 16 0.10
40 145 0.90
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:25944028 original size:50 final size:49
Alignment explanation
Indices: 25943916--25944045 Score: 170
Period size: 50 Copynumber: 2.6 Consensus size: 49
25943906 CTGATACGCA
* * *
25943916 TAGTAGCCTGCACTTAGTACTACACAAGCGACCAACAATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATCCGATACACG
* * * * *
25943965 TAGTAGCCTGCACTTTGTACTACACACGTGACCTCACCATCTGATATACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACAATCCGATACACG
*
25944015 TAGTAGGCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
25944046 TCGAAGCCCT
Statistics
Matches: 70, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
49 30 0.43
50 40 0.57
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATCCGATACACG
Found at i:25950971 original size:101 final size:101
Alignment explanation
Indices: 25950817--25950999 Score: 260
Period size: 101 Copynumber: 1.8 Consensus size: 101
25950807 ATCCGGTATA
* * * * * *
25950817 CATAGTAGCCTGCACTTTGTACTACACACGTGACCTCACCATCTGATATATGTAGTAGGCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCTCAACATATGATACATGTAGTAGCCTGCAC
25950882 TTAGTACAACACACGTGATCGAAGTCATTGAGTACG
66 TTAGTACAACACACGTGATCGAAGTCATTGAGTACG
* * *
25950918 CATAGTAGCCTGCACTTAGTACTACACATGCGA-CTTAACAGTATGGTACATGTAGTAGCCTGCA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCTCAACA-TATGATACATGTAGTAGCCTGCA
*
25950982 CTTAGTACTACACACGTG
65 CTTAGTACAACACACGTG
25951000 TATTCACAAT
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
100 5 0.07
101 66 0.93
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (101 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCTCAACATATGATACATGTAGTAGCCTGCAC
TTAGTACAACACACGTGATCGAAGTCATTGAGTACG
Found at i:25950987 original size:50 final size:50
Alignment explanation
Indices: 25950768--25950997 Score: 189
Period size: 50 Copynumber: 4.6 Consensus size: 50
25950758 ATCTGATATG
* * * ** *
25950768 CATAGTAGCCTGCACTTAGTACTACACATGCGAC-CAGCAATCCGGTATA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACTCAACAGTATGGTACA
* * * * * *
25950817 CATAGTAGCCTGCACTTTGTACTACACACGTGACCTCACCA-TCTGATATA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGA-CTCAACAGTATGGTACA
** * * * * *
25950867 TGTAGTAGGCTGCACTTAGTACAACACACGTGA-TCGA-AGTCATTGAGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACTCAACAGT-A-TG-GTACA
* *
25950918 CATAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAGTATGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACTCAACAGTATGGTACA
**
25950968 TGTAGTAGCCTGCACTTAGTACTACACACG
1 CATAGTAGCCTGCACTTAGTACTACACACG
25950998 TGTATTCACA
Statistics
Matches: 144, Mismatches: 29, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
47 1 0.01
48 3 0.02
49 30 0.21
50 69 0.48
51 35 0.24
52 3 0.02
53 3 0.02
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACTCAACAGTATGGTACA
Found at i:25952320 original size:29 final size:29
Alignment explanation
Indices: 25952288--25952349 Score: 115
Period size: 29 Copynumber: 2.1 Consensus size: 29
25952278 TCCTCATAGC
25952288 TTCCTCAGGTTCCCACGTAGCCTCTTCTA
1 TTCCTCAGGTTCCCACGTAGCCTCTTCTA
*
25952317 TTCCTCAGGTTCCCACGTAGCCTTTTCTA
1 TTCCTCAGGTTCCCACGTAGCCTCTTCTA
25952346 TTCC
1 TTCC
25952350 ATTTTTGTGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.13, C:0.37, G:0.13, T:0.37
Consensus pattern (29 bp):
TTCCTCAGGTTCCCACGTAGCCTCTTCTA
Found at i:25957497 original size:52 final size:51
Alignment explanation
Indices: 25957379--25957548 Score: 229
Period size: 51 Copynumber: 3.4 Consensus size: 51
25957369 CGGATATCCG
* * * * *
25957379 GTGGCCTGCACATAGTACCACCCTTGT-AGTCAAAGCTACCTTCTTCATAAA
1 GTGGCCTTCACATAGTACCACACTTGTGA-CCAAAGCTATCTTCTTCACAAA
*
25957430 GTGGCCATCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATC-TTCTTCACAAA
* *
25957482 GTGGCCTTCACATAGTACTACACTTGTGACC-AAGCTATC-TCTTCTCAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCACAAA
25957531 GTGGCCTTCACATAGTAC
1 GTGGCCTTCACATAGTAC
25957549 TGCACTTAAG
Statistics
Matches: 108, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
49 27 0.25
51 41 0.38
52 40 0.37
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCACAAA
Found at i:25968637 original size:46 final size:44
Alignment explanation
Indices: 25968494--25968637 Score: 116
Period size: 46 Copynumber: 3.1 Consensus size: 44
25968484 CCCGCCCATA
* *
25968494 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * *
25968543 --CGAACTCGGACTCAACTCAACGAGTTCAGGCATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTC-GG-ATGCCCAAATCC-T
25968586 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
25968633 AGTGA
1 AGTGA
25968638 CATGTCACTT
Statistics
Matches: 77, Mismatches: 8, Indels: 23
0.71 0.07 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.05
44 4 0.05
45 2 0.03
46 31 0.40
47 26 0.34
48 6 0.08
49 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:25974588 original size:13 final size:13
Alignment explanation
Indices: 25974570--25974603 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
25974560 TAGGACACAC
25974570 CCGTGTGGGAAAG
1 CCGTGTGGGAAAG
*
25974583 CCGTGTGGGAAGG
1 CCGTGTGGGAAAG
25974596 CCGTGTGG
1 CCGTGTGG
25974604 TCAAACACAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.15, C:0.18, G:0.50, T:0.18
Consensus pattern (13 bp):
CCGTGTGGGAAAG
Found at i:25981140 original size:18 final size:18
Alignment explanation
Indices: 25981117--25981153 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
25981107 GGACTTGCAT
25981117 ATTGTTTACTGTTACTGC
1 ATTGTTTACTGTTACTGC
*
25981135 ATTGTTTACTGTTATTGC
1 ATTGTTTACTGTTACTGC
25981153 A
1 A
25981154 CTATTTTCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.19, C:0.14, G:0.16, T:0.51
Consensus pattern (18 bp):
ATTGTTTACTGTTACTGC
Done.