Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 83 of 362
Found at i:25984845 original size:57 final size:57
Alignment explanation
Indices: 25984784--25984899 Score: 232
Period size: 57 Copynumber: 2.0 Consensus size: 57
25984774 CCAATTTTCC
25984784 TTTCCTCTCCTCTTTCCTACTATTTTTTTCTCTTTTAGTGCTGCCAAGAATCATTGA
1 TTTCCTCTCCTCTTTCCTACTATTTTTTTCTCTTTTAGTGCTGCCAAGAATCATTGA
25984841 TTTCCTCTCCTCTTTCCTACTATTTTTTTCTCTTTTAGTGCTGCCAAGAATCATTGA
1 TTTCCTCTCCTCTTTCCTACTATTTTTTTCTCTTTTAGTGCTGCCAAGAATCATTGA
25984898 TT
1 TT
25984900 ATTGCTAAGT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 59 1.00
ACGTcount: A:0.16, C:0.26, G:0.09, T:0.50
Consensus pattern (57 bp):
TTTCCTCTCCTCTTTCCTACTATTTTTTTCTCTTTTAGTGCTGCCAAGAATCATTGA
Found at i:25985868 original size:27 final size:27
Alignment explanation
Indices: 25985838--25985925 Score: 113
Period size: 27 Copynumber: 3.3 Consensus size: 27
25985828 TAAATGATAG
*
25985838 AATGACTGTTTTTCCCTTATGTGGTAA
1 AATGACTGTTTTGCCCTTATGTGGTAA
* * *
25985865 AATGACTATTTTGGCCTTATGTGGGAA
1 AATGACTGTTTTGCCCTTATGTGGTAA
* * *
25985892 AATAATTGTTTTGCCCTTATGAGGTAA
1 AATGACTGTTTTGCCCTTATGTGGTAA
25985919 AATGACT
1 AATGACT
25985926 AAAATGCCCC
Statistics
Matches: 49, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.27, C:0.12, G:0.20, T:0.40
Consensus pattern (27 bp):
AATGACTGTTTTGCCCTTATGTGGTAA
Found at i:26000898 original size:40 final size:40
Alignment explanation
Indices: 26000816--26001036 Score: 265
Period size: 40 Copynumber: 5.6 Consensus size: 40
26000806 TATTCGGATG
* * *
26000816 ATATCGGGGCTAAGTCCCGAAGGCA-TGGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
26000855 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
*
26000895 ATATCCGGGCTAAGTCCCAAAGGC-GTTTGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCAG-TTGTGCT-A-TTGACT
** *
26000935 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
* * *
26000975 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTA-TTGACT
*
26001015 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
26001037 TACTTGGGTT
Statistics
Matches: 161, Mismatches: 13, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
39 42 0.26
40 113 0.70
41 6 0.04
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
Found at i:26000954 original size:80 final size:80
Alignment explanation
Indices: 26000816--26001036 Score: 295
Period size: 80 Copynumber: 2.8 Consensus size: 80
26000806 TATTCGGATG
* * * * *
26000816 ATATCGGGGCTAAGTCCCGAAGGCA-TGGTGCTAG-TGACTATATCCGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTG-CTATATCCGGGCTAAGTCCCGAAGGC
*
26000879 AGTTGTGCTATTGACT
65 AGTTGTGCTAGTGACT
* * * *
26000895 ATATCCGGGCTAAGTCCCAAAGGCGTTTGTGTGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCT
1 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCA
*
26000960 TTTGTGCTAGTGACT
66 GTTGTGCTAGTGACT
* *
26000975 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGG
26001037 TACTTGGGTT
Statistics
Matches: 126, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
79 37 0.29
80 87 0.69
81 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCA
GTTGTGCTAGTGACT
Found at i:26020935 original size:16 final size:18
Alignment explanation
Indices: 26020898--26020945 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
26020888 AAGTAATTTC
26020898 AAAATATAAATAAAGATA
1 AAAATATAAATAAAGATA
26020916 AAAATAATAAA-AAAG-TA
1 AAAAT-ATAAATAAAGATA
26020933 AAAATATATAATA
1 AAAATATA-AATA
26020946 GGTGTTTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
16 3 0.11
17 9 0.33
18 10 0.37
19 5 0.19
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.23
Consensus pattern (18 bp):
AAAATATAAATAAAGATA
Found at i:26032813 original size:30 final size:30
Alignment explanation
Indices: 26032779--26032937 Score: 97
Period size: 30 Copynumber: 5.3 Consensus size: 30
26032769 TTGTTGACAC
** *
26032779 ATCCCTTTTTGTAATTTGATAACCGAAGTT
1 ATCCCTTTTCATAATTTGATAACCGAAGAT
* * * *
26032809 ATCCCTTTTCATAATTCGACAGCTGAAGAT
1 ATCCCTTTTCATAATTTGATAACCGAAGAT
*** * **
26032839 ATCCCTTTTCATAATTTGATGGTCGTCA-CC
1 ATCCCTTTTCATAATTTGATAACCG-AAGAT
*** * *
26032869 ATCCCTTTTCATAATTTGATGGTCGTCA-CT
1 ATCCCTTTTCATAATTTGATAACCG-AAGAT
** *
26032899 ATCCCTTTTCATAATTTGATAGTCGAAGCT
1 ATCCCTTTTCATAATTTGATAACCGAAGAT
26032929 ATCCCTTTT
1 ATCCCTTTT
26032938 TATTGACTGA
Statistics
Matches: 109, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
29 1 0.01
30 107 0.98
31 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.13, T:0.41
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATAACCGAAGAT
Found at i:26032902 original size:60 final size:58
Alignment explanation
Indices: 26032838--26033032 Score: 191
Period size: 60 Copynumber: 3.3 Consensus size: 58
26032828 CAGCTGAAGA
26032838 TATCCCTTTTCATAATTTGATGGTCGTCACCATCCCTTTTCATAATTTGATGGTCGTCAC
1 TATCCCTTTTCATAATTTGATGGTCG-CACCATCCCTTTTCAT-ATTTGATGGTCGTCAC
* * * * **
26032898 TATCCCTTTTCATAATTTGATAGTCGAAGCTATCCCTTTT--TATTGACTGATGGCCGAAGAC
1 TATCCCTTTTCATAATTTGATGGTCGCA-CCATCCCTTTTCATATT---TGATGGTCG-TCAC
* **
26032959 -ATCCCTTTTCATAGTTCAATGGTCGCCACCATCCCTTTTCAT-TGTTGATGGTCGTCAC
1 TATCCCTTTTCATAATTTGATGGTCG-CACCATCCCTTTTCATAT-TTGATGGTCGTCAC
*
26033017 CATCCCTTTTCATAAT
1 TATCCCTTTTCATAAT
26033033 CGATAACTGA
Statistics
Matches: 109, Mismatches: 16, Indels: 21
0.75 0.11 0.14
Matches are distributed among these distances:
57 3 0.03
58 3 0.03
59 23 0.21
60 74 0.68
61 4 0.04
62 2 0.02
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.39
Consensus pattern (58 bp):
TATCCCTTTTCATAATTTGATGGTCGCACCATCCCTTTTCATATTTGATGGTCGTCAC
Found at i:26032949 original size:90 final size:90
Alignment explanation
Indices: 26032808--26033000 Score: 212
Period size: 90 Copynumber: 2.1 Consensus size: 90
26032798 TAACCGAAGT
* * * *
26032808 TATCCCTTTTCATAATTCGACAGCTGAAGATATCCCTTTTCATAATTTGATGGTCGTCA-CCATC
1 TATCCCTTTTCATAATTCGACAGCTGAAGATATCCCTTTTCATAATCTGATGGCCG-AAGACATC
** *
26032872 CCTTTTCATAATTTGATGGTCGTCAC
65 CCTTTTCATAATTCAATGGTCGCCAC
* * * * *
26032898 TATCCCTTTTCATAATTTGATAG-TCGAAGCTATCCCTTTTTATTGA-CTGATGGCCGAAGACAT
1 TATCCCTTTTCATAATTCGACAGCT-GAAGATATCCCTTTTCA-TAATCTGATGGCCGAAGACAT
*
26032961 CCCTTTTCATAGTTCAATGGTCGCCAC
64 CCCTTTTCATAATTCAATGGTCGCCAC
*
26032988 CATCCCTTTTCAT
1 TATCCCTTTTCAT
26033001 TGTTGATGGT
Statistics
Matches: 86, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
89 2 0.02
90 82 0.95
91 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.38
Consensus pattern (90 bp):
TATCCCTTTTCATAATTCGACAGCTGAAGATATCCCTTTTCATAATCTGATGGCCGAAGACATCC
CTTTTCATAATTCAATGGTCGCCAC
Found at i:26032992 original size:30 final size:29
Alignment explanation
Indices: 26032958--26033030 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 29
26032948 TGGCCGAAGA
26032958 CATCCCTTTTCATAGTTCAATGGTCGCCAC
1 CATCCCTTTTCATAGTT-AATGGTCGCCAC
* * *
26032988 CATCCCTTTTCATTGTTGATGGTCGTCAC
1 CATCCCTTTTCATAGTTAATGGTCGCCAC
26033017 CATCCCTTTTCATA
1 CATCCCTTTTCATA
26033031 ATCGATAACT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 23 0.59
30 16 0.41
ACGTcount: A:0.18, C:0.32, G:0.12, T:0.38
Consensus pattern (29 bp):
CATCCCTTTTCATAGTTAATGGTCGCCAC
Found at i:26040465 original size:20 final size:20
Alignment explanation
Indices: 26040414--26040467 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
26040404 AACAAGGGTC
26040414 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
* *
26040434 ACACGTCTGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
26040454 ACACGCCCGTGTGG
1 ACACGCCCGTGTGG
26040468 GCAGGCCGGG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.11, C:0.28, G:0.39, T:0.22
Consensus pattern (20 bp):
ACACGCCCGTGTGGCTTGGG
Found at i:26041531 original size:24 final size:22
Alignment explanation
Indices: 26041480--26041523 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
26041470 TATGAGTATT
26041480 CACTTTTCAAGCATATATTCTA
1 CACTTTTCAAGCATATATTCTA
26041502 CACTTTTCAAGCATATATTCTA
1 CACTTTTCAAGCATATATTCTA
26041524 ACATCTTTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.23, G:0.05, T:0.41
Consensus pattern (22 bp):
CACTTTTCAAGCATATATTCTA
Found at i:26043744 original size:42 final size:43
Alignment explanation
Indices: 26043633--26043754 Score: 151
Period size: 43 Copynumber: 2.9 Consensus size: 43
26043623 TACCATACCA
* * *
26043633 ATGCCATATCCCAGATATAGTCTTACA-TGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACAGTAATCTCATATCG
* * * *
26043675 ATGCTAATAGCCCAGCTATGGTCTTACACAG-ATTCTCATATCG
1 ATGC-CATATCCCAGATATGGTCTTACACAGTAATCTCATATCG
26043718 ATGCCATATCCCAGATATGGTCTTACAC-GTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACAGTAATCTCA
26043755 GTAATCCTAA
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
41 1 0.02
42 31 0.47
43 33 0.50
44 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (43 bp):
ATGCCATATCCCAGATATGGTCTTACACAGTAATCTCATATCG
Found at i:26045301 original size:42 final size:43
Alignment explanation
Indices: 26045202--26045316 Score: 144
Period size: 43 Copynumber: 2.7 Consensus size: 43
26045192 ACCAATGCCA
* *
26045202 ATCCCAGATATGGTCTTACATGTAATCTCGTATCGATGCCAAT
1 ATCCCAGATATGGTCTTACACGTAATCTCATATCGATGCCAAT
* * * *
26045245 AGCCCAGCTATGGTCTTACACG-AATTCTCATATTGATTCC-AT
1 ATCCCAGATATGGTCTTACACGTAA-TCTCATATCGATGCCAAT
*
26045287 ATCCCAGATATGGTCTTATACGTAATCTCA
1 ATCCCAGATATGGTCTTACACGTAATCTCA
26045317 GTAACCCTAA
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
42 28 0.46
43 33 0.54
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (43 bp):
ATCCCAGATATGGTCTTACACGTAATCTCATATCGATGCCAAT
Found at i:26048727 original size:9 final size:9
Alignment explanation
Indices: 26048713--26048737 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
26048703 ATATACATGT
26048713 AACATAATG
1 AACATAATG
26048722 AACATAATG
1 AACATAATG
26048731 AACATAA
1 AACATAA
26048738 CTTATAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.60, C:0.12, G:0.08, T:0.20
Consensus pattern (9 bp):
AACATAATG
Found at i:26053536 original size:46 final size:45
Alignment explanation
Indices: 26053476--26053651 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 45
26053466 TGGTTGAGCA
*
26053476 TCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * * * *
26053522 TCCGAACTCGTTGAGTTAAGTCCGAGTTC-GTGAAATGTAACTAG-GCA-
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GCGAAG
*
26053569 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
26053615 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
26053652 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 64 0.60
47 31 0.29
48 2 0.02
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (45 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:26053637 original size:93 final size:93
Alignment explanation
Indices: 26053473--26053643 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
26053463 GGATGGTTGA
* * *
26053473 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCATTGAGT
26053538 TAAGTCCGAGTTCGTGAAATGTAACTAG
66 TAAGTCCGAGTTCGTGAAATGTAACTAG
* * *
26053566 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCATTGAGT
*
26053631 TGAGTCCGAGTTC
66 TAAGTCCGAGTTC
26053644 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCATTGAGT
TAAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:26057041 original size:11 final size:11
Alignment explanation
Indices: 26057009--26057040 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
26056999 CCAAGTTAGA
26057009 AAAATATTTTT
1 AAAATATTTTT
26057020 AAAATATTTTT
1 AAAATATTTTT
26057031 AAAAT-TTTTT
1 AAAATATTTTT
26057041 TTGGTGTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.24
11 16 0.76
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
AAAATATTTTT
Found at i:26058304 original size:42 final size:42
Alignment explanation
Indices: 26058258--26058412 Score: 156
Period size: 42 Copynumber: 3.7 Consensus size: 42
26058248 GCCTTGTGCT
26058258 GGTGTATTAAAT-AGGGCTTTATTGCCTAGCAGGCTTTATGCC
1 GGTGTATTAAATCA-GGCTTTATTGCCTAGCAGGCTTTATGCC
***
26058300 GGTGTATTTTTTCAGGCTTTATTGCCTAGCAGGCTTTATGCC
1 GGTGTATTAAATCAGGCTTTATTGCCTAGCAGGCTTTATGCC
* ** * * * *
26058342 AGTGTATTATGTCAGGC-CTATTGCTTAGCAGGTTTTGTGCC
1 GGTGTATTAAATCAGGCTTTATTGCCTAGCAGGCTTTATGCC
* *
26058383 GGTGTATTATA-CTAGGCTTTA-TGCCCAGCA
1 GGTGTATTAAATC-AGGCTTTATTGCCTAGCA
26058413 AATTTTATGT
Statistics
Matches: 95, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
40 1 0.01
41 40 0.42
42 53 0.56
43 1 0.01
ACGTcount: A:0.19, C:0.18, G:0.25, T:0.38
Consensus pattern (42 bp):
GGTGTATTAAATCAGGCTTTATTGCCTAGCAGGCTTTATGCC
Found at i:26058388 original size:41 final size:42
Alignment explanation
Indices: 26058272--26058392 Score: 163
Period size: 42 Copynumber: 2.9 Consensus size: 42
26058262 TATTAAATAG
* * *
26058272 GGCTTTATTGCCTAGCAGGCTTTATGCCGGTGTATTTTTTCA
1 GGCTCTATTGCCTAGCAGGCTTTATGCCGGTGTATTATGTCA
* *
26058314 GGCTTTATTGCCTAGCAGGCTTTATGCCAGTGTATTATGTCA
1 GGCTCTATTGCCTAGCAGGCTTTATGCCGGTGTATTATGTCA
* * *
26058356 GGC-CTATTGCTTAGCAGGTTTTGTGCCGGTGTATTAT
1 GGCTCTATTGCCTAGCAGGCTTTATGCCGGTGTATTAT
26058393 ACTAGGCTTT
Statistics
Matches: 71, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
41 29 0.41
42 42 0.59
ACGTcount: A:0.16, C:0.18, G:0.26, T:0.40
Consensus pattern (42 bp):
GGCTCTATTGCCTAGCAGGCTTTATGCCGGTGTATTATGTCA
Found at i:26066131 original size:79 final size:81
Alignment explanation
Indices: 26066007--26066190 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
26065997 GCTACTCGTT
* *
26066007 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATGCCTTC-GGATCTTAACCCG
* *
26066070 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
26066086 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCAC-AATGCCTTCGGATCTTAACCCG
* *
26066149 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
26066166 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26066191 CATCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 24 0.26
79 48 0.53
80 19 0.21
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:26066190 original size:40 final size:40
Alignment explanation
Indices: 26065988--26066190 Score: 229
Period size: 39 Copynumber: 5.1 Consensus size: 40
26065978 CGGAATTTAA
** *
26065988 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26066028 CCGGTTATAGTAACTCGCAC-AATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
26066067 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26066106 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
26066146 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
26066186 CCGGA
1 CCGGA
26066191 CATCATTCAA
Statistics
Matches: 139, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
38 2 0.01
39 68 0.49
40 57 0.41
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:26073770 original size:40 final size:40
Alignment explanation
Indices: 26073733--26073917 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
26073723 GCTACTCGTT
*
26073733 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
26073773 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
26073813 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
26073852 CAATTGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
26073893 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26073918 CATCATTCAA
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 77 0.63
41 12 0.10
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:26073844 original size:79 final size:82
Alignment explanation
Indices: 26073733--26073917 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
26073723 GCTACTCGTT
* *
26073733 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATTGCCTTC-GGATCTTAACCC
* *
26073796 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
26073813 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAATTGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATTGCCTTCGGATCTTAACCCG
* *
26073876 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
26073893 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26073918 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATTGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:26085474 original size:40 final size:41
Alignment explanation
Indices: 26085380--26085569 Score: 228
Period size: 40 Copynumber: 4.7 Consensus size: 41
26085370 TACTCGAATG
*
26085380 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCT-AGCGACT
* *
26085421 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGCGACT
* * *
26085461 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGCGACT
* * * * **
26085501 ATATCCGGGTTAAGA-CCCGAAGGCCTTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGCGACT
26085541 ATATCCGGGCTAA-ATCCCGAAGGCATTTG
1 ATATCCGGGCTAAGATCCCGAAGGCATTTG
26085570 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
39 2 0.02
40 97 0.76
41 28 0.22
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGCGACT
Found at i:26085585 original size:80 final size:79
Alignment explanation
Indices: 26085380--26085592 Score: 196
Period size: 80 Copynumber: 2.7 Consensus size: 79
26085370 TACTCGAATG
* * * * * * * * * *
26085380 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACTACATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAATCCCGAAGGCATTTATAC-GAGTGACCATATCCGG-TTAAGACCCGAAGGC
*
26085445 ATTTGTGCTAGCGACT
64 ATTTGTGCGAGCGACT
* * * *
26085461 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCATATCCGGGTTAAGACCCGAAGGCC
1 ATATCCGGGCTAAATCCCGAAGGCATTTATACGAGTGACCATATCC-GGTTAAGACCCGAAGGCA
* **
26085526 TTTGTGCGAGTGGTT
65 TTTGTGCGAGCGACT
*
26085541 ATATCCGGGCTAAATCCCGAAGGCATTTGA-ACGAGT-AGCTATATCCGGTTAA
1 ATATCCGGGCTAAATCCCGAAGGCATTT-ATACGAGTGA-CCATATCCGGTTAA
26085593 ATTCTGAAGG
Statistics
Matches: 112, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
79 7 0.06
80 72 0.64
81 33 0.29
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (79 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTATACGAGTGACCATATCCGGTTAAGACCCGAAGGCAT
TTGTGCGAGCGACT
Found at i:26117630 original size:39 final size:39
Alignment explanation
Indices: 26117535--26117672 Score: 186
Period size: 39 Copynumber: 3.5 Consensus size: 39
26117525 GCTTAAAGAC
* * **
26117535 CCGCAGGCTATATGCTGGAATTATATCCGGGCTTAAAGAC
1 CCGCAGGCTATATGCTGGAATTATAACCGGACTT-AAGGT
* *
26117575 CCGCAGGCTATATGCTGGAATTATACCCAGACTTAAGGT
1 CCGCAGGCTATATGCTGGAATTATAACCGGACTTAAGGT
*
26117614 CCGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGGT
1 CCGCAGGCTATATGCTGGAATTATAACCGGACTTAAGGT
**
26117653 CCGCAGGCTACGTGCTGGAA
1 CCGCAGGCTATATGCTGGAA
26117673 ATATGTCCGG
Statistics
Matches: 89, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 58 0.65
40 31 0.35
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
CCGCAGGCTATATGCTGGAATTATAACCGGACTTAAGGT
Found at i:26125422 original size:40 final size:40
Alignment explanation
Indices: 26125367--26125510 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
26125357 ATTTGATGTG
26125367 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
26125407 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
* * ** ** *
26125447 TACCCGGACTT-AAGGTCCGCAGGCTACGTGCTGGAAATA
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
* * * *
26125486 TGTCCTGGC-AAAAGTCCCGCAGGCT
1 TATCCGGGCTTAAAGACCCGCAGGCT
26125511 TCGAGCTGGT
Statistics
Matches: 89, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 40 0.45
40 49 0.55
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTA
Found at i:26128207 original size:69 final size:69
Alignment explanation
Indices: 26128096--26128231 Score: 263
Period size: 69 Copynumber: 2.0 Consensus size: 69
26128086 CAATGCCTCG
26128096 TAAGGTGCCATCTGTATGCTGGACTGGTAGCTATTATTGTACGCAAATTCTGCCAACGACAAGTA
1 TAAGGTGCCATCTGTATGCTGGACTGGTAGCTATTATTGTACGCAAATTCTGCCAACGACAAGTA
26128161 ATTT
66 ATTT
*
26128165 TAAGGTGCCATCTGTATGCTGGACTGGTAGCTATTATTGTACGCAAATTCTGCCAATGACAAGTA
1 TAAGGTGCCATCTGTATGCTGGACTGGTAGCTATTATTGTACGCAAATTCTGCCAACGACAAGTA
26128230 AT
66 AT
26128232 CCTCCCAACT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 66 1.00
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (69 bp):
TAAGGTGCCATCTGTATGCTGGACTGGTAGCTATTATTGTACGCAAATTCTGCCAACGACAAGTA
ATTT
Found at i:26129973 original size:23 final size:23
Alignment explanation
Indices: 26129943--26129986 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
26129933 GTCCTAAATG
*
26129943 TTGTCTTGTCAACATCAGTCTCC
1 TTGTCTTGTAAACATCAGTCTCC
26129966 TTGTCTTGTAAACATCAGTCT
1 TTGTCTTGTAAACATCAGTCT
26129987 TCTTAACCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.20, C:0.25, G:0.14, T:0.41
Consensus pattern (23 bp):
TTGTCTTGTAAACATCAGTCTCC
Found at i:26133084 original size:34 final size:34
Alignment explanation
Indices: 26133037--26133143 Score: 108
Period size: 34 Copynumber: 3.2 Consensus size: 34
26133027 TATAGTATTG
* * **
26133037 AACAGTCTCGGCCTAAGCCCAATTCAGTTGCAAT
1 AACAGTGTGGGCCTAAGCCCAATTCAGTAACAAT
* *
26133071 AACAGTGTGGGCCTCAGCCCAATACAGTAACAAT
1 AACAGTGTGGGCCTAAGCCCAATTCAGTAACAAT
* * * *
26133105 ATCAATGTGGGCCTTAGCCCATTTCAGT-ACAAT
1 AACAGTGTGGGCCTAAGCCCAATTCAGTAACAAT
*
26133138 ATCAGT
1 AACAGT
26133144 AATGCACACA
Statistics
Matches: 61, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
33 10 0.16
34 51 0.84
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (34 bp):
AACAGTGTGGGCCTAAGCCCAATTCAGTAACAAT
Found at i:26141020 original size:40 final size:40
Alignment explanation
Indices: 26140965--26141146 Score: 287
Period size: 40 Copynumber: 4.6 Consensus size: 40
26140955 TATTCGAATG
26140965 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
26141005 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
26141045 ATATCCGGGCCAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
26141085 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
26141125 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
26141147 TACTTGGGTT
Statistics
Matches: 131, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 13 0.10
40 116 0.89
41 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:26148599 original size:40 final size:40
Alignment explanation
Indices: 26148475--26148623 Score: 255
Period size: 40 Copynumber: 3.7 Consensus size: 40
26148465 TATTCGAATG
26148475 ATATCCGGGCTAAGTCCCGAA-GCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
26148514 ATATCCGGGCTAAGTCCCGAAGGCATTTGTTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTG-TGCTAGTGACT
* *
26148555 ATATCCGGGCCAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
26148595 ATATCCGGGCTAAGACCCGAAGGCATTTG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTG
26148624 CGAGTTGCTA
Statistics
Matches: 104, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
39 21 0.20
40 44 0.42
41 39 0.38
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:26148614 original size:81 final size:80
Alignment explanation
Indices: 26148475--26148623 Score: 262
Period size: 81 Copynumber: 1.9 Consensus size: 80
26148465 TATTCGAATG
* *
26148475 ATATCCGGGCTAAGTCCCGAAGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCAT
1 ATATCCGGGCCAAGTCCCGAAGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCAT
26148540 TTGTTGCTAGTGACT
66 TTGTTGCTAGTGACT
*
26148555 ATATCCGGGCCAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCCAAGTCCCGAA-GCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
26148620 TTTG
65 TTTG
26148624 CGAGTTGCTA
Statistics
Matches: 65, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
80 20 0.31
81 45 0.69
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCCAAGTCCCGAAGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCAT
TTGTTGCTAGTGACT
Found at i:26160906 original size:13 final size:13
Alignment explanation
Indices: 26160888--26160913 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26160878 TAAGCAATCC
26160888 CACACGGGCGTGT
1 CACACGGGCGTGT
26160901 CACACGGGCGTGT
1 CACACGGGCGTGT
26160914 TCCTGTCCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:26170818 original size:10 final size:10
Alignment explanation
Indices: 26170803--26170832 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
26170793 GTTTTATACT
26170803 TAGGAGAGCA
1 TAGGAGAGCA
26170813 TAGGAGAGCA
1 TAGGAGAGCA
26170823 TAGGAGAGCA
1 TAGGAGAGCA
26170833 AAAGCAACGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.40, C:0.10, G:0.40, T:0.10
Consensus pattern (10 bp):
TAGGAGAGCA
Found at i:26172305 original size:40 final size:41
Alignment explanation
Indices: 26172250--26172345 Score: 117
Period size: 40 Copynumber: 2.4 Consensus size: 41
26172240 TATCTCAGTA
*
26172250 TCGCACACTTAGTGCC-TCATGTAGCTGAAGCTA-TTCCAAC
1 TCGCACACTTAGTGCCAT-ATGTAGCCGAAGCTATTTCCAAC
* * *
26172290 TCGCACACTTAGTGCCATTTGTAGCCGAAGTTATTTCGAAC
1 TCGCACACTTAGTGCCATATGTAGCCGAAGCTATTTCCAAC
*
26172331 -CGCACACTTAATGCC
1 TCGCACACTTAGTGCC
26172346 GAACTTAATC
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
40 42 0.86
41 7 0.14
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (41 bp):
TCGCACACTTAGTGCCATATGTAGCCGAAGCTATTTCCAAC
Found at i:26175932 original size:47 final size:48
Alignment explanation
Indices: 26175861--26176033 Score: 223
Period size: 47 Copynumber: 3.7 Consensus size: 48
26175851 AGGTAAGGTA
26175861 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCAT-ATCTCATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCATG
** * *
26175908 TTGATGCCATGTCCCAAACATGGTCTTACACT-GACT-ATCATCTCGTAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCATCATCTCAT-G
* *
26175956 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCAC-TCGTCTCGATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTC-ATG
26176002 CCGATGCCATGTCCCAGACATGGTCTTACACT
1 CCGATGCCATGTCCCAGACATGGTCTTACACT
26176034 GGCTTAGTGG
Statistics
Matches: 108, Mismatches: 10, Indels: 15
0.81 0.08 0.11
Matches are distributed among these distances:
46 27 0.25
47 66 0.61
48 15 0.14
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCATG
Found at i:26176070 original size:88 final size:90
Alignment explanation
Indices: 26175861--26176076 Score: 269
Period size: 94 Copynumber: 2.4 Consensus size: 90
26175851 AGGTAAGGTA
* **
26175861 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCATGTTGATGCCATGTCCCAAA
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACATATCTCATGCCGATGCCATGTCCCAAA
26175926 CATGGTCTTACACTGACTATCATCTCGTAG
64 CATGGTCTTACACTGACTATCA---CGTAG
* *
26175956 CCGATGCATGTCCCAGACATGTCTTACACTAGCAC-TCGTCTCGATGCCGATGCCATGTCCCAGA
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCACAT-ATCTC-ATGCCGATGCCATGTCCCAAA
* *
26176020 CATGGTCTTACACTGGCT-T-A-GTGG
64 CATGGTCTTACACTGACTATCACGTAG
*
26176044 CTGATGCATGTCCCAGACATGTCTTACACTAGC
1 CCGATGCATGTCCCAGACATGTCTTACACTAGC
26176077 CCACAATGAC
Statistics
Matches: 111, Mismatches: 8, Indels: 11
0.85 0.06 0.08
Matches are distributed among these distances:
88 35 0.32
92 2 0.02
93 19 0.17
94 49 0.44
95 6 0.05
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (90 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCACATATCTCATGCCGATGCCATGTCCCAAACA
TGGTCTTACACTGACTATCACGTAG
Found at i:26180165 original size:29 final size:28
Alignment explanation
Indices: 26180133--26180187 Score: 101
Period size: 29 Copynumber: 1.9 Consensus size: 28
26180123 ACGAGATAAA
26180133 CTGATTTGGCTTCGGGCCATGCATATTGG
1 CTGATTTGGCTTCGGGCCATG-ATATTGG
26180162 CTGATTTGGCTTCGGGCCATGATATT
1 CTGATTTGGCTTCGGGCCATGATATT
26180188 AGTATTTTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
28 5 0.19
29 21 0.81
ACGTcount: A:0.15, C:0.20, G:0.29, T:0.36
Consensus pattern (28 bp):
CTGATTTGGCTTCGGGCCATGATATTGG
Found at i:26192202 original size:49 final size:49
Alignment explanation
Indices: 26192135--26192405 Score: 176
Period size: 49 Copynumber: 5.6 Consensus size: 49
26192125 ACATCAAAGT
26192135 CGATGCCATGTCCCAGACAGGTCTTACATTGACTTTCATATGTCGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACATTGACTTTCATATGTCGAGGC
* * * ** * * * *
26192184 CGATGCCATATCCTAGACATGGTCTTAC-TCTGGCTAGCACA--TCAAAGT
1 CGATGCCATGTCCCAGACA-GGTCTTACAT-TGACTTTCATATGTCGAGGC
* * * * *
26192232 CAATGCCATGTCCCAGATAGCTCTTACACTGAGTTTCATATGTCGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACATTGACTTTCATATGTCGAGGC
* * ** * * * * * *
26192281 CGATGCCGTGTCCTAGACAGGTCTTACACAGACTCTCATCTATTGATGT
1 CGATGCCATGTCCCAGACAGGTCTTACATTGACTTTCATATGTCGAGGC
* * * * *
26192330 CGATGCTATGTCCCAGACAAGTCTTACACT-AGCTTGT-ATATCTTGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACATTGA-CTT-TCATATGTCGAGGC
* * *
26192379 CAATG-CATGTCCCAGGCATGTCTTACA
1 CGATGCCATGTCCCAGACAGGTCTTACA
26192406 CTAGCTCTCA
Statistics
Matches: 165, Mismatches: 50, Indels: 15
0.72 0.22 0.07
Matches are distributed among these distances:
47 13 0.08
48 39 0.24
49 97 0.59
50 16 0.10
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACATTGACTTTCATATGTCGAGGC
Found at i:26192257 original size:97 final size:97
Alignment explanation
Indices: 26192089--26192309 Score: 345
Period size: 97 Copynumber: 2.3 Consensus size: 97
26192079 TAAGATTCCA
* * *
26192089 ATGCCATGTCCCAGACATGGTCTTACACTGGGTAGCACATCAAAGTCGATGCCATGTCCCAGACA
1 ATGCCATGTCCTAGACATGGTCTTACACTGGCTAGCACATCAAAGTCAATGCCATGTCCCAGACA
* *
26192154 GGTCTTACATTGACTTTCATATGTCGAGGCCG
66 GCTCTTACACTGACTTTCATATGTCGAGGCCG
* * *
26192186 ATGCCATATCCTAGACATGGTCTTACTCTGGCTAGCACATCAAAGTCAATGCCATGTCCCAGATA
1 ATGCCATGTCCTAGACATGGTCTTACACTGGCTAGCACATCAAAGTCAATGCCATGTCCCAGACA
*
26192251 GCTCTTACACTGAGTTTCATATGTCGAGGCCG
66 GCTCTTACACTGACTTTCATATGTCGAGGCCG
*
26192283 ATGCCGTGTCCTAGACA-GGTCTTACAC
1 ATGCCATGTCCTAGACATGGTCTTACAC
26192310 AGACTCTCAT
Statistics
Matches: 112, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
96 9 0.08
97 103 0.92
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (97 bp):
ATGCCATGTCCTAGACATGGTCTTACACTGGCTAGCACATCAAAGTCAATGCCATGTCCCAGACA
GCTCTTACACTGACTTTCATATGTCGAGGCCG
Found at i:26192448 original size:46 final size:45
Alignment explanation
Indices: 26192289--26192456 Score: 131
Period size: 46 Copynumber: 3.6 Consensus size: 45
26192279 GCCGATGCCG
* * *
26192289 TGTCCTAGACAGGTCTTACAC-AGACTCTCATCTATTGATGTCGATGCTA
1 TGTCCCAGACATGTCTTACACTAG-CTCTCATCTA---ATGCCGATG-TA
* * * * * * *
26192338 TGTCCCAGACAAGTCTTACACTAGCTTGTATATCTTGAGGCCAATGCA
1 TGTCCCAGACATGTCTTACACTAGC-TCT-CATC-TAATGCCGATGTA
*
26192386 TGTCCCAGGCATGTCTTACACTAGCTCTCATCTCAATGCCGATGTA
1 TGTCCCAGACATGTCTTACACTAGCTCTCATCT-AATGCCGATGTA
* *
26192432 TGTCCTAGACATGTCTTACATTAGC
1 TGTCCCAGACATGTCTTACACTAGC
26192457 ACACATATCA
Statistics
Matches: 94, Mismatches: 20, Indels: 13
0.74 0.16 0.10
Matches are distributed among these distances:
45 1 0.01
46 33 0.35
47 2 0.02
48 24 0.26
49 26 0.28
50 4 0.04
51 3 0.03
52 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (45 bp):
TGTCCCAGACATGTCTTACACTAGCTCTCATCTAATGCCGATGTA
Found at i:26194905 original size:27 final size:27
Alignment explanation
Indices: 26194875--26194981 Score: 128
Period size: 27 Copynumber: 3.9 Consensus size: 27
26194865 GGCTGCGAGA
* *
26194875 ACAGATAATGTGACAGAGTCACCAGAT
1 ACAGATAATGTGGCAGAGCCACCAGAT
* *
26194902 ACAGATAATCGTGGCAGAGCCACTA-AA
1 ACAGATAAT-GTGGCAGAGCCACCAGAT
26194929 ACAGATATATGTGGCAGAGCCACCAGAT
1 ACAGATA-ATGTGGCAGAGCCACCAGAT
*
26194957 -CAGATAATTGTGGCATAGCCACCAG
1 ACAGATAA-TGTGGCAGAGCCACCAG
26194982 GACGCTTCCT
Statistics
Matches: 69, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
26 1 0.01
27 53 0.77
28 15 0.22
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.18
Consensus pattern (27 bp):
ACAGATAATGTGGCAGAGCCACCAGAT
Found at i:26194964 original size:54 final size:54
Alignment explanation
Indices: 26194874--26194978 Score: 158
Period size: 54 Copynumber: 1.9 Consensus size: 54
26194864 TGGCTGCGAG
*
26194874 AACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCACTAA
1 AACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACTAA
* * *
26194928 AACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCAC
1 AACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCAC
26194979 CAGGACGCTT
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
54 28 0.61
55 18 0.39
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (54 bp):
AACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACTAA
Found at i:26201446 original size:46 final size:46
Alignment explanation
Indices: 26201379--26201550 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
26201369 AACCCGCCCC
* *
26201379 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGTGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCATCCA
*
26201425 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G--T-GTTCGCATCCA
* * * ***
26201473 TCA-CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCATCCA
*
26201518 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
26201551 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 1 0.01
46 58 0.56
47 27 0.26
48 3 0.03
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCATCCA
Found at i:26201492 original size:93 final size:93
Alignment explanation
Indices: 26201384--26201554 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
26201374 GCCCCTAAGT
***
26201384 GAACTCAGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
26201449 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
26201477 GAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
26201542 CGAGTTCGGATGC
66 CGAGTTCGGATGC
26201555 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:26202008 original size:30 final size:30
Alignment explanation
Indices: 26201974--26202033 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
26201964 ATTTAATATG
26201974 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
26202004 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
26202034 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:26204508 original size:16 final size:16
Alignment explanation
Indices: 26204483--26204514 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26204473 CAATCTTTAT
*
26204483 AAAATTTTTGTTTTCG
1 AAAATCTTTGTTTTCG
26204499 AAAATCTTTGTTTTCG
1 AAAATCTTTGTTTTCG
26204515 TAAACCCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.09, G:0.12, T:0.53
Consensus pattern (16 bp):
AAAATCTTTGTTTTCG
Found at i:26205549 original size:27 final size:27
Alignment explanation
Indices: 26205475--26205581 Score: 110
Period size: 27 Copynumber: 4.0 Consensus size: 27
26205465 TGGCTGCCAT
* * *
26205475 AACAGATAA-TGTGACAGAGTCACCAA
1 AACAGATAATTGTGGCAGAGCCACCAG
* *
26205501 ATACAAATAATCGTGGCAGAGCCACCAG
1 A-ACAGATAATTGTGGCAGAGCCACCAG
*
26205529 AACATAT-ATATGTGGCAGAGCCACCAG
1 AACAGATAAT-TGTGGCAGAGCCACCAG
* *
26205556 ATCAGATAATTGTGGCATAGCCACCA
1 AACAGATAATTGTGGCAGAGCCACCA
26205582 AGACGCTTCC
Statistics
Matches: 67, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 3 0.04
27 48 0.72
28 16 0.24
ACGTcount: A:0.39, C:0.22, G:0.21, T:0.18
Consensus pattern (27 bp):
AACAGATAATTGTGGCAGAGCCACCAG
Found at i:26205578 original size:54 final size:54
Alignment explanation
Indices: 26205475--26205581 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 54
26205465 TGGCTGCCAT
*
26205475 AACAGATAATGTGACAGAGTCACCAAATACAAATAATCGTGGCAGAGCCACCAG
1 AACAGATAATGTGACAGAGCCACCAAATACAAATAATCGTGGCAGAGCCACCAG
* * * * * *
26205529 AACATATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCA
1 AACAGATA-ATGTGACAGAGCCACCAAATACAAATAATCGTGGCAGAGCCACCA
26205582 AGACGCTTCC
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
54 28 0.62
55 17 0.38
ACGTcount: A:0.39, C:0.22, G:0.21, T:0.18
Consensus pattern (54 bp):
AACAGATAATGTGACAGAGCCACCAAATACAAATAATCGTGGCAGAGCCACCAG
Found at i:26208640 original size:13 final size:13
Alignment explanation
Indices: 26208622--26208647 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26208612 TGGCATCATT
26208622 ACTTGTAACACCC
1 ACTTGTAACACCC
26208635 ACTTGTAACACCC
1 ACTTGTAACACCC
26208648 CTTACACGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.38, G:0.08, T:0.23
Consensus pattern (13 bp):
ACTTGTAACACCC
Found at i:26210203 original size:54 final size:54
Alignment explanation
Indices: 26210017--26210213 Score: 204
Period size: 55 Copynumber: 3.6 Consensus size: 54
26210007 GAATTACCAT
* * * *
26210017 TGCCATGTCTTGAG-ATGGTCTTACGTGGTATT-CTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTG-GCATGGTCTTACATGAT-TTCCTTGCCTTATAGAACTCATCAA
* *** *
26210070 TGCGATGCCTTGGCATGGTCTTACATG-GGACCTTTGCATTATAGTAACTCATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATTTCC-TTGCCTTATAG-AACTCATCAA
* * * *
26210125 TGCCATGTCTTGACATGGTTTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATAGAACTCATCAA
*
26210179 TGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 TGCCATGCCTTGGCATGGTCTTACATGATTTCCTT
26210214 ATCTTACCAA
Statistics
Matches: 117, Mismatches: 21, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
52 2 0.02
53 30 0.26
54 41 0.35
55 42 0.36
56 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (54 bp):
TGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATAGAACTCATCAA
Found at i:26210247 original size:47 final size:47
Alignment explanation
Indices: 26210192--26210312 Score: 215
Period size: 47 Copynumber: 2.6 Consensus size: 47
26210182 CATGCCTTGG
* *
26210192 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
26210239 CATGGTCTTACATGGTATCCTTGTCTTACCAAATTCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
26210286 CATGGTCTTACATGGTATCCTTGTCTT
1 CATGGTCTTACATGGTATCCTTGTCTT
26210313 GTGCCAATGC
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:26211053 original size:30 final size:31
Alignment explanation
Indices: 26211010--26211067 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
26211000 CTAACTCAAA
*
26211010 CTTTGGCAAAATTACAATTTTGTCCCTAAAC
1 CTTTGGCAAAATTACAATTTTGCCCCTAAAC
*
26211041 CTTT-GCAGAATTACAATTTTGCCCCTA
1 CTTTGGCAAAATTACAATTTTGCCCCTA
26211068 GGCTCAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.36
Consensus pattern (31 bp):
CTTTGGCAAAATTACAATTTTGCCCCTAAAC
Found at i:26222511 original size:22 final size:23
Alignment explanation
Indices: 26222473--26222515 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
26222463 ACACACGCTC
*
26222473 GTGTCTCTACCCGTGTGGACAGT
1 GTGTCTCTAACCGTGTGGACAGT
26222496 GTGTCTC-AACCGTGTGGACA
1 GTGTCTCTAACCGTGTGGACA
26222516 AAAATAGGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.16, C:0.26, G:0.30, T:0.28
Consensus pattern (23 bp):
GTGTCTCTAACCGTGTGGACAGT
Found at i:26223574 original size:43 final size:43
Alignment explanation
Indices: 26223470--26223576 Score: 108
Period size: 43 Copynumber: 2.5 Consensus size: 43
26223460 TATTTTAGAT
* * * *
26223470 ATGGTCTTACATGTTATCACATATCGATGCCACTATCCCAGAC
1 ATGGTCTTACATGTAATCACATAACAATGCCAATATCCCAGAC
* *** * *
26223513 AGGGTCTTACAAAAAATCA-ATTAACAATGCCAATGTCCCAGCC
1 ATGGTCTTACATGTAATCACA-TAACAATGCCAATATCCCAGAC
26223556 ATGGTCTTACATGTAATCACA
1 ATGGTCTTACATGTAATCACA
26223577 ATACAATAAC
Statistics
Matches: 48, Mismatches: 14, Indels: 3
0.74 0.22 0.05
Matches are distributed among these distances:
42 1 0.02
43 46 0.96
44 1 0.02
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCACATAACAATGCCAATATCCCAGAC
Found at i:26235198 original size:42 final size:43
Alignment explanation
Indices: 26235090--26235203 Score: 142
Period size: 43 Copynumber: 2.7 Consensus size: 43
26235080 AGCTCGTACA
* * * *
26235090 ATGCCAATGTCCTAAACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCTAGACGTGGTCTTACACGAAATAAAATATCG
* *
26235133 ATGCCACTATCCTAGACAG-GGTCTTACACGAAATAAAATA-CG
1 ATGCCAATGTCCTAGAC-GTGGTCTTACACGAAATAAAATATCG
*
26235175 ATGCCAATGTCCCAGACGTGGTCTTACAC
1 ATGCCAATGTCCTAGACGTGGTCTTACAC
26235204 AATAACACAT
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
41 1 0.02
42 26 0.43
43 32 0.53
44 1 0.02
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCTAGACGTGGTCTTACACGAAATAAAATATCG
Found at i:26239818 original size:25 final size:25
Alignment explanation
Indices: 26239800--26239883 Score: 77
Period size: 23 Copynumber: 3.4 Consensus size: 25
26239790 GAGCTATGAT
26239800 CAGTAAGCTCCTATTGAGCTGATAGA
1 CAGTAAGCT-CTATTGAGCTGATAGA
* *
26239826 CAGTAAGCTTTATTGAGTTGA-A-A
1 CAGTAAGCTCTATTGAGCTGATAGA
* * *
26239849 CGGTAAGCTCTGA-CGAGCTGA-AAA
1 CAGTAAGCTCT-ATTGAGCTGATAGA
26239873 CAGTAAGCTCT
1 CAGTAAGCTCT
26239884 TACAAGCTAA
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
23 17 0.35
24 13 0.27
25 10 0.20
26 9 0.18
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (25 bp):
CAGTAAGCTCTATTGAGCTGATAGA
Found at i:26239891 original size:24 final size:24
Alignment explanation
Indices: 26239846--26239891 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
26239836 TATTGAGTTG
* *
26239846 AAACGGTAAGCTCTGACGAGCTGA
1 AAACAGTAAGCTCTGACAAGCTGA
*
26239870 AAACAGTAAGCTCTTACAAGCT
1 AAACAGTAAGCTCTGACAAGCT
26239892 AATATATAGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (24 bp):
AAACAGTAAGCTCTGACAAGCTGA
Found at i:26243427 original size:46 final size:46
Alignment explanation
Indices: 26243358--26243481 Score: 180
Period size: 46 Copynumber: 2.7 Consensus size: 46
26243348 TGGGCATCCG
*
26243358 AGCTCGTTGAGTCGAGTCCGAGTTCACTTAT-AGATGCAAATG-TCCA
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGA-ATGCAAATGCT-CA
* *
26243404 AGCTCGTTGGGTTGAGTCTGAGTTCACTTATGAATGCAAATGCTCA
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAATGCTCA
*
26243450 AGCTCGTTGAGTTGAGTCCAAGTTCACTTATG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATG
26243482 GGCGGGTTAC
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
46 68 0.97
47 2 0.03
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (46 bp):
AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAATGCTCA
Found at i:26248997 original size:25 final size:24
Alignment explanation
Indices: 26248953--26249004 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
26248943 CACAAACGCA
26248953 GCTCTTTATGAGAATCCTGATATAG
1 GCTCTTTATGAGAATCCTGATAT-G
** *
26248978 GCTCTTTATGAGCTTTCTGATATG
1 GCTCTTTATGAGAATCCTGATATG
26249002 GCT
1 GCT
26249005 TGCTTGAACA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 4 0.17
25 20 0.83
ACGTcount: A:0.21, C:0.17, G:0.21, T:0.40
Consensus pattern (24 bp):
GCTCTTTATGAGAATCCTGATATG
Found at i:26250681 original size:37 final size:37
Alignment explanation
Indices: 26250631--26250703 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
26250621 ATAAAGTTTG
* *
26250631 GTAATGCTCTGTAACCCTGTTCTGATGACGGATATGA
1 GTAATGCTCTGTAACCCTGTTCTGACGACAGATATGA
26250668 GTAATGCTCTGTAACCCTGTTCTGACGACAGATATG
1 GTAATGCTCTGTAACCCTGTTCTGACGACAGATATG
26250704 GGTTAGGGTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (37 bp):
GTAATGCTCTGTAACCCTGTTCTGACGACAGATATGA
Found at i:26252034 original size:22 final size:22
Alignment explanation
Indices: 26252004--26252047 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
26251994 CATCCATTTA
*
26252004 GCATACATTTTCTCAA-TTCAAT
1 GCATACATTAT-TCAATTTCAAT
*
26252026 GCATTCATTATTCAATTTCAAT
1 GCATACATTATTCAATTTCAAT
26252048 CAATTTGTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.32, C:0.20, G:0.05, T:0.43
Consensus pattern (22 bp):
GCATACATTATTCAATTTCAAT
Found at i:26253104 original size:21 final size:21
Alignment explanation
Indices: 26253063--26253127 Score: 51
Period size: 24 Copynumber: 2.9 Consensus size: 21
26253053 GCTGATGGAT
* *
26253063 GGTAAGCTCTATTGAGATGAA-
1 GGTAAGCTCTA-CGAGCTGAAC
26253084 GGTAAGCTCTGACGAGCTGAAAAC
1 GGTAAGCTCT-ACGAGCTG--AAC
*
26253108 AGTAAGCTCTTACGAGCTGA
1 GGTAAGCTC-TACGAGCTGA
26253128 TATATTGGTA
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
21 15 0.42
22 2 0.06
23 2 0.06
24 16 0.44
25 1 0.03
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (21 bp):
GGTAAGCTCTACGAGCTGAAC
Found at i:26262289 original size:44 final size:45
Alignment explanation
Indices: 26262238--26262336 Score: 112
Period size: 46 Copynumber: 2.2 Consensus size: 45
26262228 CCAGGCATGG
*
26262238 TCTTACACTGAC-ACATCTCGTA-ACCGATGCATGTCTCAAACATC
1 TCTTACACTGACTACATCTCG-AGACCGATGCATGTCACAAACATC
* * * * *
26262282 TCTTACACTGGCTTACATCTCGAGGCTGATGCATGTCACAGACATG
1 TCTTACACTGAC-TACATCTCGAGACCGATGCATGTCACAAACATC
26262328 TCTTACACT
1 TCTTACACT
26262337 AGCTCTCGTC
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
44 11 0.24
45 1 0.02
46 34 0.74
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.29
Consensus pattern (45 bp):
TCTTACACTGACTACATCTCGAGACCGATGCATGTCACAAACATC
Found at i:26262356 original size:46 final size:45
Alignment explanation
Indices: 26262263--26262430 Score: 151
Period size: 46 Copynumber: 3.6 Consensus size: 45
26262253 TCTCGTAACC
* *
26262263 GATGCATGTCTCAAACATCTCTTACACTGGCT-TACATCTCGAGGCT
1 GATGCATGTC-CAAACATGTCTTACACTGGCTCT-CATCTCAAGGCT
* * * *
26262309 GATGCATGTCACAGACATGTCTTACACTAGCTCTCGTCTCAATGCT
1 GATGCATGTC-CAAACATGTCTTACACTGGCTCTCATCTCAAGGCT
* ** *
26262355 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAAT-GTGGCC
1 GATG-CATG-TCCAAACAT-GTCTTACACTGGCTCTCAT-CTCAAGGCT
*
26262403 GATGCATGTCTCAAACATGTCTTGCACT
1 GATGCATGTC-CAAACATGTCTTACACT
26262431 AGCACACAAA
Statistics
Matches: 100, Mismatches: 16, Indels: 12
0.78 0.12 0.09
Matches are distributed among these distances:
46 52 0.52
47 22 0.22
48 25 0.25
49 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (45 bp):
GATGCATGTCCAAACATGTCTTACACTGGCTCTCATCTCAAGGCT
Found at i:26268125 original size:23 final size:24
Alignment explanation
Indices: 26268099--26268148 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
26268089 ATATTCTTAA
26268099 AAATATTTTGAATTTTGA-ATTTT
1 AAATATTTTGAATTTTGATATTTT
** *
26268122 AAATATTTTTCATTTTTATATTTT
1 AAATATTTTGAATTTTGATATTTT
26268146 AAA
1 AAA
26268149 AAATTATATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 15 0.65
24 8 0.35
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (24 bp):
AAATATTTTGAATTTTGATATTTT
Found at i:26268842 original size:28 final size:29
Alignment explanation
Indices: 26268773--26268842 Score: 74
Period size: 28 Copynumber: 2.5 Consensus size: 29
26268763 GATAAATATT
**
26268773 TTTAAATAAAAAAATACAAAAATTTAATG
1 TTTAAATTTAAAAATACAAAAATTTAATG
* *
26268802 TCTCAAA-TT-AAAATATAAAAATTTAA-G
1 T-TTAAATTTAAAAATACAAAAATTTAATG
26268829 TTTAAATTTAAAAA
1 TTTAAATTTAAAAA
26268843 GAATATAAAC
Statistics
Matches: 33, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
26 4 0.12
27 4 0.12
28 20 0.61
29 1 0.03
30 4 0.12
ACGTcount: A:0.59, C:0.04, G:0.03, T:0.34
Consensus pattern (29 bp):
TTTAAATTTAAAAATACAAAAATTTAATG
Found at i:26270831 original size:48 final size:48
Alignment explanation
Indices: 26270774--26270875 Score: 159
Period size: 48 Copynumber: 2.1 Consensus size: 48
26270764 CACATGGTAG
* *
26270774 GATGCCAATGCCATATCCTGGATATGGTCTTAAATGGGATCACATATC
1 GATGCCAATGCCATATCCTAGACATGGTCTTAAATGGGATCACATATC
* *
26270822 GATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCTAGACATGGTCTTAAATGGGATCACATATC
*
26270870 AATGCC
1 GATGCC
26270876 GATAGCCCAG
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATATCCTAGACATGGTCTTAAATGGGATCACATATC
Found at i:26270894 original size:43 final size:47
Alignment explanation
Indices: 26270796--26270953 Score: 132
Period size: 48 Copynumber: 3.4 Consensus size: 47
26270786 ATATCCTGGA
* * *
26270796 TATGGTCTTAAATGGGATCACATATCGATGCCAATGCCATGTCCTAGAC
1 TATGGTCTTACATGGGATCACATATCAATGCCAAT--CATGTCCCAGAC
*
26270845 -ATGGTCTTACATGGGATCACATATCAATGCCGAT-A-G-CCCAG-C
1 TATGGTCTTACATGGGATCACATATCAATGCCAATCATGTCCCAGAC
* * * * *
26270887 TATGGTCTTACA-CGAAGTTACATATCAATGCCAAAGCCATGTCCTAGAC
1 TATGGTCTTACATGGGA-TCACATATCAATGCC-AA-TCATGTCCCAGAC
*
26270936 -ATGGTCTTACATAGGATC
1 TATGGTCTTACATGGGATC
26270954 GCACATAACC
Statistics
Matches: 87, Mismatches: 13, Indels: 19
0.73 0.11 0.16
Matches are distributed among these distances:
42 3 0.03
43 29 0.33
44 2 0.02
45 1 0.01
46 1 0.01
47 1 0.01
48 47 0.54
49 3 0.03
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (47 bp):
TATGGTCTTACATGGGATCACATATCAATGCCAATCATGTCCCAGAC
Found at i:26282230 original size:40 final size:40
Alignment explanation
Indices: 26282136--26282326 Score: 244
Period size: 40 Copynumber: 4.8 Consensus size: 40
26282126 TGGATGAAAA
** * *
26282136 CCGGGCTAAGTCCCGAAGGCATCTGCACTAGTGACT-AAT
1 CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAAT
*
26282175 CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAAC
1 CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAAT
*
26282215 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAAT
* *
26282255 CCGGGCTAAGTCCCGAAGGAAAT-TGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGG-CATCTGTGCGAGTTACT-AAAT
* * *
26282295 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGT
26282327 AGTTATATCC
Statistics
Matches: 136, Mismatches: 12, Indels: 7
0.88 0.08 0.05
Matches are distributed among these distances:
39 34 0.25
40 98 0.72
41 4 0.03
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAAT
Found at i:26290442 original size:40 final size:40
Alignment explanation
Indices: 26290351--26290538 Score: 231
Period size: 40 Copynumber: 4.7 Consensus size: 40
26290341 ATGAAAACCA
** * *
26290351 GGCTAAGTCCCGAAGGCATCTGCACTAGTGACT-AATCCG
1 GGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAATCCG
*
26290390 GGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAACCCG
1 GGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAATCCG
*
26290430 GGCTAAGTCCCGAAGGCA-CTTGTGTGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATC-TGTGCGAGTTACTAAATCCG
*
26290470 GGCTAAGTCCCGAAGGCAAT-TGTGCGAGTTACTCTAA-CCG
1 GGCTAAGTCCCGAAGGC-ATCTGTGCGAGTTACT-AAATCCG
* * *
26290510 GGCTATGTCCCGAAGGCATTTGAGCGAGT
1 GGCTAAGTCCCGAAGGCATCTGTGCGAGT
26290539 AGTTATATCC
Statistics
Matches: 132, Mismatches: 11, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
39 32 0.24
40 97 0.73
41 3 0.02
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAATCCG
Found at i:26301075 original size:48 final size:48
Alignment explanation
Indices: 26301023--26301146 Score: 176
Period size: 48 Copynumber: 2.6 Consensus size: 48
26301013 TCTTGAATAT
*
26301023 GGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCATACAA
1 GGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACAA
** * * *
26301071 GGTCTTACATGGGATCGTAGATCGATGCCAATGCCATGTCCTAGACAT
1 GGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACAA
**
26301119 GGTCTTGTATGGGATCACATATCGATGC
1 GGTCTTACATGGGATCACATATCGATGC
26301147 TGATAGCCAA
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 65 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (48 bp):
GGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACAA
Found at i:26303958 original size:19 final size:18
Alignment explanation
Indices: 26303936--26304022 Score: 50
Period size: 19 Copynumber: 4.6 Consensus size: 18
26303926 TTTTACGAAA
*
26303936 TTTATATTTCTTTACATTT
1 TTTATATTT-TATACATTT
*
26303955 TTTATAATTTTCTTACGACTTT
1 TTTAT-ATTTT-ATAC-A-TTT
* * * *
26303977 ATAAAATTTTATAAATTT
1 TTTATATTTTATACATTT
*
26303995 TTTATATTTCTATATATTT
1 TTTATATTT-TATACATTT
26304014 TTTA-ATTTT
1 TTTATATTTT
26304023 TATGATTTTT
Statistics
Matches: 54, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
17 1 0.02
18 13 0.24
19 19 0.35
20 10 0.19
21 6 0.11
22 5 0.09
ACGTcount: A:0.29, C:0.07, G:0.01, T:0.63
Consensus pattern (18 bp):
TTTATATTTTATACATTT
Found at i:26304032 original size:18 final size:19
Alignment explanation
Indices: 26303982--26304021 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
26303972 ACTTTATAAA
*
26303982 ATTT-TATAAATTTTTTAT
1 ATTTCTATATATTTTTTAT
26304000 ATTTCTATATATTTTTTA-
1 ATTTCTATATATTTTTTAT
26304018 ATTT
1 ATTT
26304022 TTATGATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.68
Consensus pattern (19 bp):
ATTTCTATATATTTTTTAT
Found at i:26304062 original size:10 final size:10
Alignment explanation
Indices: 26304047--26304107 Score: 54
Period size: 10 Copynumber: 6.3 Consensus size: 10
26304037 AAATTACAAT
26304047 TTTTTATATA
1 TTTTTATATA
*
26304057 TTTTTACA-A
1 TTTTTATATA
*
26304066 TTTTTATATT
1 TTTTTATATA
* *
26304076 TTTTTCTAAA
1 TTTTTATATA
* *
26304086 TTTTAATAAA
1 TTTTTATATA
26304096 TTTTTA-ATA
1 TTTTTATATA
26304105 TTT
1 TTT
26304108 GAATTTTTTA
Statistics
Matches: 40, Mismatches: 10, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
9 13 0.32
10 27 0.68
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (10 bp):
TTTTTATATA
Found at i:26304080 original size:20 final size:20
Alignment explanation
Indices: 26304040--26304079 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
26304030 TTTAAAAAAA
26304040 TTACAATTTTTTATATATTT
1 TTACAATTTTTTATATATTT
26304060 TTACAA-TTTTTATAT-TTT
1 TTACAATTTTTTATATATTT
26304078 TT
1 TT
26304080 TCTAAATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 5 0.25
19 9 0.45
20 6 0.30
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.68
Consensus pattern (20 bp):
TTACAATTTTTTATATATTT
Found at i:26304089 original size:19 final size:19
Alignment explanation
Indices: 26304048--26304101 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
26304038 AATTACAATT
*
26304048 TTTTATATATTTTTACAAT
1 TTTTATATATTTTTACAAA
*
26304067 TTTTATAT-TTTTTTCTAAA
1 TTTTATATATTTTTAC-AAA
*
26304086 TTTTAATAAATTTTTA
1 TTTT-ATATATTTTTA
26304102 ATATTTGAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 6 0.21
19 14 0.50
20 3 0.11
21 5 0.18
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTTATATATTTTTACAAA
Found at i:26304116 original size:37 final size:37
Alignment explanation
Indices: 26304073--26304144 Score: 94
Period size: 37 Copynumber: 1.9 Consensus size: 37
26304063 CAATTTTTAT
* *
26304073 ATTTTTT-TCTAAATTTTAATAA-ATTTTTAATATTTGA
1 ATTTTTTAT-TAAAATTTAATAATATTTATAA-ATTTGA
26304110 ATTTTTTATTAAAATTTAATAATATTTATAAATTT
1 ATTTTTTATTAAAATTTAATAATATTTATAAATTT
26304145 TATTTATTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
37 23 0.74
38 8 0.26
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.58
Consensus pattern (37 bp):
ATTTTTTATTAAAATTTAATAATATTTATAAATTTGA
Found at i:26304164 original size:10 final size:9
Alignment explanation
Indices: 26304142--26304181 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
26304132 TATTTATAAA
26304142 TTTTATTTAT
1 TTTTATTT-T
*
26304152 TTTAATTTT
1 TTTTATTTT
26304161 TTTTATTTT
1 TTTTATTTT
*
26304170 TTTTCTTTT
1 TTTTATTTT
26304179 TTT
1 TTT
26304182 AATAAAAGCA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
9 20 0.74
10 7 0.26
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.85
Consensus pattern (9 bp):
TTTTATTTT
Found at i:26304179 original size:15 final size:15
Alignment explanation
Indices: 26304140--26304169 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26304130 AATATTTATA
*
26304140 AATTTTATTTATTTT
1 AATTTTTTTTATTTT
26304155 AATTTTTTTTATTTT
1 AATTTTTTTTATTTT
26304170 TTTTCTTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (15 bp):
AATTTTTTTTATTTT
Found at i:26304361 original size:88 final size:87
Alignment explanation
Indices: 26304212--26304412 Score: 235
Period size: 88 Copynumber: 2.3 Consensus size: 87
26304202 TGCTTTTTTC
* * * * *
26304212 TTGAAAACGTTTGAGGTTCTTTTTGATGCATTCTGAAAGTTTAAGTACCCAATTGAGTGCAA-AA
1 TTGAAAAAGTTTGAGG-GCTTTTTGATGCATTCTAAAAGTTCAAGTACCCAAATGAGTGCAACAA
* *
26304276 AAGATAG-GAGCTTAGTTGCTTCTT
65 AA-ATAGAG-GCTTAATTACTTCTT
* * *
26304300 TTGAAAAAGTTTGAGGGCCTTTTTGATGTATTTTAAAAGTTCAAGTATCCAAATGAGTGCAACAA
1 TTGAAAAAGTTTGAGGG-CTTTTTGATGCATTCTAAAAGTTCAAGTACCCAAATGAGTGCAACAA
*
26304365 AAATAGAGGCTTAATTACTTTTT
65 AAATAGAGGCTTAATTACTTCTT
*
26304388 TTGAAAAAAATTTGAGGGCTTTTTG
1 TTG-AAAAAGTTTGAGGGCTTTTTG
26304413 CACCCTTAAG
Statistics
Matches: 97, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
88 79 0.81
89 18 0.19
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.37
Consensus pattern (87 bp):
TTGAAAAAGTTTGAGGGCTTTTTGATGCATTCTAAAAGTTCAAGTACCCAAATGAGTGCAACAAA
AATAGAGGCTTAATTACTTCTT
Found at i:26309098 original size:54 final size:54
Alignment explanation
Indices: 26309025--26309161 Score: 265
Period size: 54 Copynumber: 2.5 Consensus size: 54
26309015 ATTGTCGTTG
26309025 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
*
26309079 CAGGGGATTTAGCCTGGACTGGTAATCCTGACAATACTCTATGAGTTTATATTA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
26309133 CAGGGGATTTAGCCTGGACTGGTAATCCC
1 CAGGGGATTTAGCCTGGACTGGTAATCCC
26309162 ACTGTAAGGA
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 81 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (54 bp):
CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
Found at i:26309311 original size:46 final size:46
Alignment explanation
Indices: 26309244--26309552 Score: 476
Period size: 46 Copynumber: 6.7 Consensus size: 46
26309234 TGGCAACCTG
*
26309244 TGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
26309290 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
26309336 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
26309382 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
26309428 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* ** * *
26309474 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAA
* * * *
26309520 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
26309553 TCACGTCAAA
Statistics
Matches: 247, Mismatches: 15, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
45 1 0.00
46 246 1.00
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:26309438 original size:138 final size:137
Alignment explanation
Indices: 26309198--26309552 Score: 510
Period size: 138 Copynumber: 2.6 Consensus size: 137
26309188 GTGCTCTCTT
26309198 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC----TG---TGTGTAAGACCA
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAATGAAATGTGTAAGACCA
*
26309256 TGGTTGAAAGATACCATGACAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG
66 TGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG
*
26309321 CAACCTG
131 CAACATG
*
26309328 ATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACC
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA-ATGAAATGTGTAAGACC
*
26309393 ATGGTTGAAAGATACCATGGCAACCTGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATG
65 ATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATG
26309458 GCAACATG
130 GCAACATG
* * ** * *
26309466 ACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGAC
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA-ATG-AAATGTGTAAGAC
* * *
26309530 CATAGTTGAAAGACACTATGGCA
64 CATGGTTGAAAGATACCATGGCA
26309553 TCACGTCAAA
Statistics
Matches: 201, Mismatches: 15, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
130 43 0.21
135 2 0.01
137 1 0.00
138 155 0.77
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (137 bp):
ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAATGAAATGTGTAAGACCA
TGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG
CAACATG
Found at i:26316202 original size:26 final size:26
Alignment explanation
Indices: 26316160--26316236 Score: 91
Period size: 26 Copynumber: 3.0 Consensus size: 26
26316150 TTGCCATATA
*
26316160 TACTGATACTGGTAGCTTTGCTGCGT
1 TACTGATACTGGCAGCTTTGCTGCGT
* * *
26316186 TACTGATACTAGCAGCTTTGCTACAT
1 TACTGATACTGGCAGCTTTGCTGCGT
* * *
26316212 TGCTGTTACTGGCAGCTTTACTGCG
1 TACTGATACTGGCAGCTTTGCTGCG
26316237 ATATTGGTGT
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.36
Consensus pattern (26 bp):
TACTGATACTGGCAGCTTTGCTGCGT
Found at i:26317982 original size:19 final size:19
Alignment explanation
Indices: 26317958--26317994 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
26317948 AGGTTCAACA
26317958 CCTAAGCCTATGAAATTGT
1 CCTAAGCCTATGAAATTGT
26317977 CCTAAGCCTATGAAATTG
1 CCTAAGCCTATGAAATTG
26317995 CTCTTGGTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (19 bp):
CCTAAGCCTATGAAATTGT
Found at i:26318530 original size:3 final size:3
Alignment explanation
Indices: 26318522--26318548 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
26318512 AGAACCGCCA
26318522 AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG
26318549 TATTCGGCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:26324461 original size:27 final size:27
Alignment explanation
Indices: 26324389--26324490 Score: 100
Period size: 27 Copynumber: 3.8 Consensus size: 27
26324379 TATACGTCAC
* *
26324389 ATAAGGATAAAA-AAGTCATCTTACCAT
1 ATAAGGGTAAAACAA-TCATTTTACCAT
* * *
26324416 AAAAGGGAAAAATAATCATTTTACCAT
1 ATAAGGGTAAAACAATCATTTTACCAT
*
26324443 ATAAGGGTAAAACAGTCATTTTACC-T
1 ATAAGGGTAAAACAATCATTTTACCAT
**
26324469 CATAAGGCCAAAACAATCATTT
1 -ATAAGGGTAAAACAATCATTT
26324491 CATCAAATTG
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 1 0.02
27 59 0.95
28 2 0.03
ACGTcount: A:0.46, C:0.16, G:0.12, T:0.26
Consensus pattern (27 bp):
ATAAGGGTAAAACAATCATTTTACCAT
Found at i:26333115 original size:20 final size:20
Alignment explanation
Indices: 26333079--26333116 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
26333069 ATGTTAATAT
*
26333079 TATGTTAAAATATTAAACTA
1 TATGTTAAAATAATAAACTA
26333099 TATGTTAATAA-AATAAAC
1 TATGTTAA-AATAATAAAC
26333117 AAAACAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.88
21 2 0.12
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.37
Consensus pattern (20 bp):
TATGTTAAAATAATAAACTA
Found at i:26334761 original size:55 final size:54
Alignment explanation
Indices: 26334668--26334841 Score: 163
Period size: 55 Copynumber: 3.2 Consensus size: 54
26334658 AATACTTTAG
* ** * * *
26334668 TTTACCAAATTACTGAAATACCC-CCAGTTGTAAAATTACCAAAGTACCCCCGA
1 TTTACAAAATTACCCAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGA
* * * * *
26334721 TTTATAAAATTACCCAAATATTCCTTGATTTGTAAAATTACCAAAATACCCTC-A
1 TTTACAAAATTACCCAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCTCGA
* ** * *
26334775 GTTTGCAAAATTACTGAAATACCCTCGACATGTAAAATTATCAAAGTACCCTCGA
1 -TTTACAAAATTACCCAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGA
*
26334830 ATTACAAAATTA
1 TTTACAAAATTA
26334842 TTGTTTTACC
Statistics
Matches: 95, Mismatches: 22, Indels: 7
0.77 0.18 0.06
Matches are distributed among these distances:
53 16 0.17
54 39 0.41
55 40 0.42
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.29
Consensus pattern (54 bp):
TTTACAAAATTACCCAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGA
Found at i:26334779 original size:27 final size:28
Alignment explanation
Indices: 26334674--26334827 Score: 113
Period size: 27 Copynumber: 5.7 Consensus size: 28
26334664 TTAGTTTACC
** *
26334674 AAATTACTGAAATACCCCCAG--TTGTA
1 AAATTACCAAAATACCCTCAGATTTGTA
* * *
26334700 AAATTACCAAAGTACCC-CCGATTTATA
1 AAATTACCAAAATACCCTCAGATTTGTA
* * *
26334727 AAATTACCCAAATATTCCT-TGATTTGTA
1 AAATTACCAAAATA-CCCTCAGATTTGTA
*
26334755 AAATTACCAAAATACCCTCAG-TTTGCA
1 AAATTACCAAAATACCCTCAGATTTGTA
** **
26334782 AAATTACTGAAATACCCTC-GACATGTA
1 AAATTACCAAAATACCCTCAGATTTGTA
* *
26334809 AAATTATCAAAGTACCCTC
1 AAATTACCAAAATACCCTC
26334828 GAATTACAAA
Statistics
Matches: 99, Mismatches: 23, Indels: 11
0.74 0.17 0.08
Matches are distributed among these distances:
25 2 0.02
26 15 0.15
27 59 0.60
28 23 0.23
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (28 bp):
AAATTACCAAAATACCCTCAGATTTGTA
Found at i:26334826 original size:54 final size:55
Alignment explanation
Indices: 26334668--26334841 Score: 176
Period size: 54 Copynumber: 3.2 Consensus size: 55
26334658 AATACTTTAG
* * * *
26334668 TTTACCAAATTACTGAAATACCC-CCAGTTGTAAAATTACCAAAGTACCC-CCGA
1 TTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCAGA
* ** * * * *
26334721 TTTATAAAATTACCCAAATATTCCTTGATTTGTAAAATTACCAAAATACCCTCAG-
1 TTTACAAAATTACTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCTCAGA
* * *
26334776 TTTGCAAAATTACTGAAATACCCTCGACATGTAAAATTATCAAAGTACCCTC-GA
1 TTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCAGA
*
26334830 ATTACAAAATTA
1 TTTACAAAATTA
26334842 TTGTTTTACC
Statistics
Matches: 95, Mismatches: 22, Indels: 7
0.77 0.18 0.06
Matches are distributed among these distances:
53 17 0.18
54 38 0.40
55 38 0.40
56 2 0.02
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.29
Consensus pattern (55 bp):
TTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCAGA
Found at i:26334851 original size:27 final size:27
Alignment explanation
Indices: 26334821--26335716 Score: 1121
Period size: 27 Copynumber: 33.2 Consensus size: 27
26334811 ATTATCAAAG
* * *
26334821 TACCCTCGAATTACAAAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
26334848 TACCCTCGATTTACAGAATTATTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* **
26334875 TACCCTCGATTTACGAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
*
26334902 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
*
26334929 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
26334956 TACCCTTGATTTATAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
26334983 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
**
26335010 TACCCTCGATTTACTGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
26335037 TACCCTCGATTTACAGAATTACTATCT
1 TACCCTCGATTTACAAAATTACTATTT
26335064 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
26335091 TACCCTCAATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
26335118 TACCTTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* ** *
26335145 TACCCTCGTTTTACTGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
26335172 TGCCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * **
26335199 TACCTTTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
26335226 TACCCTCGATTGATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
26335253 TACCCTCGATTTACAGAATTACTATCT
1 TACCCTCGATTTACAAAATTACTATTT
*
26335280 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
** *
26335307 TACCCTC-ATTTTACTGAATTACCATTT
1 TACCCTCGA-TTTACAAAATTACTATTT
*
26335334 TGCCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* **
26335361 TACCCTTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
26335388 TACCCTCGATTGATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
26335415 TACCCTCGATTTACAAAATTACTATCT
1 TACCCTCGATTTACAAAATTACTATTT
26335442 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * **
26335469 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
26335496 TACCCTCGACTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
** *
26335523 TACCCTC-ATTTTACTGAATTACCATTT
1 TACCCTCGA-TTTACAAAATTACTATTT
*
26335550 TGCCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
26335577 TACCCTTGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
26335604 TACCCTCGATTGATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
26335631 TACCCTCAATTTACAAAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* * **
26335658 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
26335685 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
26335712 TACCC
1 TACCC
26335717 CTAGGGTGTT
Statistics
Matches: 744, Mismatches: 121, Indels: 8
0.85 0.14 0.01
Matches are distributed among these distances:
26 2 0.00
27 740 0.99
28 2 0.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:26335997 original size:27 final size:26
Alignment explanation
Indices: 26335953--26336003 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
26335943 CTCGCTGCAA
*
26335953 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
26335980 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
26336004 AGCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:26336266 original size:6 final size:6
Alignment explanation
Indices: 26336227--26336357 Score: 54
Period size: 6 Copynumber: 21.3 Consensus size: 6
26336217 TTGCATTCAC
* * * *
26336227 ATTCTG ATTTTG ATTCTG -TCACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * * * * *
26336276 -TCACCTA ATTTTG ATTCTG ATTCTG ATTTTG ATTCTG -TCACCCG ATCCTA
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
*
26336326 ATTCTG ATTCTC ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
26336358 AATGTTTCTT
Statistics
Matches: 91, Mismatches: 23, Indels: 22
0.67 0.17 0.16
Matches are distributed among these distances:
5 4 0.04
6 76 0.84
7 8 0.09
8 3 0.03
ACGTcount: A:0.20, C:0.21, G:0.13, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:26336330 original size:37 final size:34
Alignment explanation
Indices: 26336227--26336348 Score: 115
Period size: 37 Copynumber: 3.5 Consensus size: 34
26336217 TTGCATTCAC
*
26336227 ATTCTGATTTTGATTCTGTCACCTGA-TA--CTG
1 ATTCTGATTCTGATTCTGTCACCTGATTATTCTG
* *
26336258 ATTCTGATTCTAATTCTGTCACCTAATTTTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGA--TT-ATTCTG
* *
26336295 ATTCTGATTTTGATTCTGTCACCCGATCCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGAT--T-ATTCTG
*
26336332 ATTCTCATTCTGATTCT
1 ATTCTGATTCTGATTCT
26336349 AGTTCTGATA
Statistics
Matches: 73, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
31 23 0.32
34 1 0.01
35 2 0.03
37 47 0.64
ACGTcount: A:0.20, C:0.21, G:0.12, T:0.47
Consensus pattern (34 bp):
ATTCTGATTCTGATTCTGTCACCTGATTATTCTG
Found at i:26336343 original size:31 final size:31
Alignment explanation
Indices: 26336227--26336303 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
26336217 TTGCATTCAC
*
26336227 ATTCTGATTTTGATTCTGTCACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
* * **
26336258 ATTCTGATTCTAATTCTGTCACCTAATTTTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
26336289 ATTCTGATTCTGATT
1 ATTCTGATTCTGATT
26336304 TTGATTCTGT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:26337172 original size:18 final size:17
Alignment explanation
Indices: 26337132--26337165 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
26337122 TATATGTTGC
26337132 TAATATGAATGGTTATA
1 TAATATGAATGGTTATA
*
26337149 TGATATGGAATGGTTAT
1 TAATAT-GAATGGTTAT
26337166 GAAATATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.35, C:0.00, G:0.24, T:0.41
Consensus pattern (17 bp):
TAATATGAATGGTTATA
Found at i:26339545 original size:25 final size:25
Alignment explanation
Indices: 26339516--26339563 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
26339506 TTATAACGTG
* *
26339516 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
26339541 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
26339564 GTTTATGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:26339630 original size:20 final size:20
Alignment explanation
Indices: 26339607--26339664 Score: 107
Period size: 20 Copynumber: 2.9 Consensus size: 20
26339597 TAAACATGGT
26339607 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
26339627 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
26339647 ATGTATGATATGCACATG
1 ATGTATGATATGCACATG
26339665 CTGTATTCAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:26339647 original size:11 final size:11
Alignment explanation
Indices: 26339611--26339664 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
26339601 CATGGTATGT
26339611 ATGATATGCAC
1 ATGATATGCAC
* *
26339622 ATGACATG--T
1 ATGATATGCAC
26339631 ATGATATGCAC
1 ATGATATGCAC
*
26339642 ATGATATG--T
1 ATGATATGCAC
26339651 ATGATATGCAC
1 ATGATATGCAC
26339662 ATG
1 ATG
26339665 CTGTATTCAT
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.45
11 18 0.55
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:26339747 original size:23 final size:23
Alignment explanation
Indices: 26339717--26339789 Score: 128
Period size: 23 Copynumber: 3.1 Consensus size: 23
26339707 AGGAAGTGAA
26339717 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
26339740 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
26339763 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
26339787 AAA
1 AAA
26339790 AGAGGCTAGG
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
23 26 0.54
24 22 0.46
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:26339806 original size:25 final size:24
Alignment explanation
Indices: 26339716--26339810 Score: 140
Period size: 24 Copynumber: 4.0 Consensus size: 24
26339706 GAGGAAGTGA
26339716 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
26339740 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
26339763 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
26339787 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
26339811 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
23 23 0.35
24 31 0.48
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:26340039 original size:31 final size:31
Alignment explanation
Indices: 26340004--26340067 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
26339994 CATTTACAGT
*
26340004 AAAGGCTTTGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
26340035 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
26340066 AA
1 AA
26340068 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:26341465 original size:39 final size:39
Alignment explanation
Indices: 26341422--26341555 Score: 216
Period size: 39 Copynumber: 3.4 Consensus size: 39
26341412 TACAATTTAG
26341422 TATTGTGATATATGCTTGAATGTTATGTGATTATATGAT
1 TATTGTGATATATGCTTGAATGTTATGTGATTATATGAT
*
26341461 TATTGTGATATATGCTTGAATGTTATGTGATTATATGAG
1 TATTGTGATATATGCTTGAATGTTATGTGATTATATGAT
*
26341500 TATTGTGATATATGCTTGAACGTTATGTGATTATATG-T
1 TATTGTGATATATGCTTGAATGTTATGTGATTATATGAT
* *
26341538 GTAATGTGATACATGCTT
1 -TATTGTGATATATGCTT
26341556 AAAAGTGAAT
Statistics
Matches: 89, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
39 89 1.00
ACGTcount: A:0.28, C:0.04, G:0.22, T:0.46
Consensus pattern (39 bp):
TATTGTGATATATGCTTGAATGTTATGTGATTATATGAT
Found at i:26341884 original size:12 final size:12
Alignment explanation
Indices: 26341867--26341892 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
26341857 TTTTTTGTGC
26341867 AAACGCCGCTAA
1 AAACGCCGCTAA
26341879 AAACGCCGCTAA
1 AAACGCCGCTAA
26341891 AA
1 AA
26341893 CCTGTTTTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:26343294 original size:40 final size:40
Alignment explanation
Indices: 26343250--26343344 Score: 131
Period size: 40 Copynumber: 2.4 Consensus size: 40
26343240 GACTACGACT
*
26343250 GCACTAAGTGTGCG-GTTTAATATAGCTTCAGCTATA-AATG
1 GCACTAAGTGTGCGAG-TTAACATAGCTTCAGCTATATAA-G
**
26343290 GCACTAAGTGTGCGAGTTGGCATAGCTTCAGCTATATAAG
1 GCACTAAGTGTGCGAGTTAACATAGCTTCAGCTATATAAG
26343330 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
26343345 TACTGACTTA
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
40 47 0.94
41 3 0.06
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (40 bp):
GCACTAAGTGTGCGAGTTAACATAGCTTCAGCTATATAAG
Found at i:26346167 original size:22 final size:22
Alignment explanation
Indices: 26346142--26346186 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
26346132 AGATATGTTA
*
26346142 CACATAGGATATCTAATGCTTG
1 CACATAAGATATCTAATGCTTG
*
26346164 CACATAAGATGTCTAATGCTTG
1 CACATAAGATATCTAATGCTTG
26346186 C
1 C
26346187 CACCATGACT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (22 bp):
CACATAAGATATCTAATGCTTG
Found at i:26350694 original size:27 final size:27
Alignment explanation
Indices: 26350610--26350688 Score: 140
Period size: 27 Copynumber: 2.9 Consensus size: 27
26350600 ACGCCCTATT
26350610 TGATAAAATGACTGTTTTGCCCCTACA
1 TGATAAAATGACTGTTTTGCCCCTACA
* *
26350637 TGATAAAATGATTGTTTTGCCCTTACA
1 TGATAAAATGACTGTTTTGCCCCTACA
26350664 TGATAAAATGACTGTTTTGCCCCTA
1 TGATAAAATGACTGTTTTGCCCCTA
26350689 TGTGATGTAT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (27 bp):
TGATAAAATGACTGTTTTGCCCCTACA
Found at i:26350935 original size:23 final size:24
Alignment explanation
Indices: 26350909--26350953 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
26350899 ATATCCCCAC
*
26350909 ATGGAGTGTAG-GGTTGGATGGAG
1 ATGGAGTGTAGAGGCTGGATGGAG
26350932 ATGGAGTGTAGAGGCTGGATGG
1 ATGGAGTGTAGAGGCTGGATGG
26350954 GTAGGACTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.22, C:0.02, G:0.51, T:0.24
Consensus pattern (24 bp):
ATGGAGTGTAGAGGCTGGATGGAG
Found at i:26357787 original size:17 final size:15
Alignment explanation
Indices: 26357722--26357797 Score: 73
Period size: 15 Copynumber: 5.0 Consensus size: 15
26357712 TAAAAATGAC
*
26357722 AAGAAAACCAA-ATA
1 AAGAAATCCAAGATA
* *
26357736 AAGAAGTCCAAGACA
1 AAGAAATCCAAGATA
*
26357751 GAGAAATCCAAGATA
1 AAGAAATCCAAGATA
*
26357766 AAGAAACTTCCAAGATT
1 AAGAAA--TCCAAGATA
*
26357783 TAGAAATCCAAGATA
1 AAGAAATCCAAGATA
26357798 CAATACCATA
Statistics
Matches: 49, Mismatches: 10, Indels: 5
0.77 0.16 0.08
Matches are distributed among these distances:
14 9 0.18
15 27 0.55
17 13 0.27
ACGTcount: A:0.55, C:0.16, G:0.14, T:0.14
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:26367671 original size:31 final size:31
Alignment explanation
Indices: 26367636--26367697 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
26367626 ATTTTTCATA
26367636 AACATATACCTACACTTATTCATCATATAAT
1 AACATATACCTACACTTATTCATCATATAAT
26367667 AACATATACCTACACTTATTCATCATATAAT
1 AACATATACCTACACTTATTCATCATATAAT
26367698 CATGTTCAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (31 bp):
AACATATACCTACACTTATTCATCATATAAT
Found at i:26367867 original size:49 final size:49
Alignment explanation
Indices: 26367802--26368039 Score: 271
Period size: 49 Copynumber: 4.8 Consensus size: 49
26367792 TAGCCAAAGC
* * * * *
26367802 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
26367851 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
** *
26367900 TATCCGGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * * * * *
26367950 CATCTC-ATACACGTATTAGCCTACACTTAGTACTACACACATGATCACAGT
1 TATC-CGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* * *
26368001 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACA
26368040 TGCGACCTCA
Statistics
Matches: 160, Mismatches: 24, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
49 88 0.55
50 38 0.24
51 33 0.21
52 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:26368047 original size:101 final size:99
Alignment explanation
Indices: 26367802--26368047 Score: 298
Period size: 101 Copynumber: 2.5 Consensus size: 99
26367792 TAGCCAAAGC
* * ** *
26367802 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACC-AATTATCCGGTACACATA
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCCGATACACATA
* *
26367866 GTAGCCTGCACTTAGTACTACACACGTGACCAAT
66 GTAGCCTACACTTAGTACTACACACATGACCAAT
*** * * *
26367900 TATCCGGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTC-ATACACGT
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATC-CGATACACAT
* *
26367964 ATTAGCCTACACTTAGTACTACACACATGATCACAGT
65 AGTAGCCTACACTTAGTACTACACACATGA-C-CAAT
* *
26368001 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCT
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCT
26368048 CACAACAGAT
Statistics
Matches: 122, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
98 39 0.32
99 38 0.31
100 2 0.02
101 43 0.35
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (99 bp):
TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCCGATACACATA
GTAGCCTACACTTAGTACTACACACATGACCAAT
Found at i:26371514 original size:24 final size:24
Alignment explanation
Indices: 26371485--26371539 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
26371475 TTTGTGGTCC
26371485 CAAAACCACTAGTTCGACTAGGGT
1 CAAAACCACTAGTTCGACTAGGGT
*
26371509 CAAAACCACTATTTCGACTAGGGT
1 CAAAACCACTAGTTCGACTAGGGT
*
26371533 CTAAACC
1 CAAAACC
26371540 GGACTGTTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.22
Consensus pattern (24 bp):
CAAAACCACTAGTTCGACTAGGGT
Found at i:26381736 original size:28 final size:28
Alignment explanation
Indices: 26381696--26381749 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
26381686 ATATATACGA
26381696 ATGTGTTGATCCAGGATCTATCAAAGAT
1 ATGTGTTGATCCAGGATCTATCAAAGAT
26381724 ATGTGTTGATCCAGGATCTATCAAAG
1 ATGTGTTGATCCAGGATCTATCAAAG
26381750 CAATCACATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.31
Consensus pattern (28 bp):
ATGTGTTGATCCAGGATCTATCAAAGAT
Found at i:26384299 original size:10 final size:10
Alignment explanation
Indices: 26384286--26384324 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
26384276 ATATGTGAAT
26384286 ATATCATGGC
1 ATATCATGGC
26384296 ATATCATGTGC
1 ATATCATG-GC
26384307 ATATCATGGC
1 ATATCATGGC
26384317 ATATCATG
1 ATATCATG
26384325 TACAAAAGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (10 bp):
ATATCATGGC
Found at i:26384312 original size:21 final size:21
Alignment explanation
Indices: 26384286--26384325 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
26384276 ATATGTGAAT
26384286 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
26384307 ATATCATGGCATATCATGT
1 ATATCATGGCATATCATGT
26384326 ACAAAAGCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:26384393 original size:25 final size:25
Alignment explanation
Indices: 26384365--26384415 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
26384355 ATAACATAAC
* * *
26384365 CCTAGAGGTATAATGGTCATTTTCA
1 CCTAGAGGCAAAAAGGTCATTTTCA
*
26384390 CCTAGGGGCAAAAAGGTCATTTTCA
1 CCTAGAGGCAAAAAGGTCATTTTCA
26384415 C
1 C
26384416 ATTATAAGGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (25 bp):
CCTAGAGGCAAAAAGGTCATTTTCA
Done.