Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 84 of 362
Found at i:26392124 original size:25 final size:25
Alignment explanation
Indices: 26392095--26392162 Score: 120
Period size: 25 Copynumber: 2.7 Consensus size: 25
26392085 TTTAATAACA
26392095 GGGGCAAAGCCCTTTTCGGTAAACT
1 GGGGCAAAGCCCTTTTCGGTAAACT
26392120 GGGGCAAAG-CCTTTCTCGGTAAACT
1 GGGGCAAAGCCCTTT-TCGGTAAACT
26392145 GGGGCAAAGCCCTTTTCG
1 GGGGCAAAGCCCTTTTCG
26392163 CAATTCCTCC
Statistics
Matches: 41, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
24 5 0.12
25 31 0.76
26 5 0.12
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (25 bp):
GGGGCAAAGCCCTTTTCGGTAAACT
Found at i:26392220 original size:10 final size:10
Alignment explanation
Indices: 26392207--26392245 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
26392197 ATATTTGAAT
26392207 ATATCATGGC
1 ATATCATGGC
26392217 ATATCATGTGC
1 ATATCATG-GC
26392228 ATATCATGGC
1 ATATCATGGC
26392238 ATATCATG
1 ATATCATG
26392246 TACAAAAGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (10 bp):
ATATCATGGC
Found at i:26392233 original size:21 final size:21
Alignment explanation
Indices: 26392207--26392246 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
26392197 ATATTTGAAT
26392207 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
26392228 ATATCATGGCATATCATGT
1 ATATCATGGCATATCATGT
26392247 ACAAAAGCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:26392314 original size:25 final size:25
Alignment explanation
Indices: 26392286--26392336 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
26392276 ATAACATAAC
* * *
26392286 CCTAGAGGTATAATGGTCATTTTCA
1 CCTAGAGGCAAAAAGGTCATTTTCA
*
26392311 CCTAGGGGCAAAAAGGTCATTTTCA
1 CCTAGAGGCAAAAAGGTCATTTTCA
26392336 C
1 C
26392337 ATTATAAGGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (25 bp):
CCTAGAGGCAAAAAGGTCATTTTCA
Found at i:26396608 original size:23 final size:25
Alignment explanation
Indices: 26396563--26396610 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 25
26396553 ACTTACCTTT
*
26396563 GCTTTTCTAGCATGAACTTGTCTTA
1 GCTTTTCTAGCATGAACTCGTCTTA
*
26396588 GCTTTT-TAGTAT-AACTCGTCTTA
1 GCTTTTCTAGCATGAACTCGTCTTA
26396611 CCTTACCTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 10 0.48
24 5 0.24
25 6 0.29
ACGTcount: A:0.21, C:0.19, G:0.15, T:0.46
Consensus pattern (25 bp):
GCTTTTCTAGCATGAACTCGTCTTA
Found at i:26396854 original size:55 final size:54
Alignment explanation
Indices: 26396681--26396938 Score: 181
Period size: 55 Copynumber: 4.8 Consensus size: 54
26396671 ATACATGGGT
* * * * *
26396681 ACCTTACCATTGCCATGACTTGTCATGGTTTTACATGGTATCCTT---TT-GAA
1 ACCTTACCAATGCCATGCCTTGGCATGGTCTTACATGGGATCCTTGCCTTAGAA
* * * *** * * *
26396731 A-CTTACCATTTCCATGTCTCAACATGGCTCTGACTTGGTATCCTTGCCTTATG-A
1 ACCTTACCAATGCCATGCCTTGGCATGG-TCTTACATGGGATCCTTGCCTTA-GAA
* * *
26396785 A-CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGT
1 ACCTTACCAATGCCATGCCTTGGCATGGTCTTACATGGGATCC-TTGCCTTAGA-A
* * * * * *
26396839 AGCTTATCAATGCCATGTCTTGACATGGTTTTACATGGTATCCTTGCCTTAGAA
1 ACCTTACCAATGCCATGCCTTGGCATGGTCTTACATGGGATCCTTGCCTTAGAA
** *
26396893 ACCTTACCAATTTTCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 ACCTTACCAA-TGCCATGCCTTGGCATGGTCTTACATGGGATCCTT
26396939 AAACCCTAAT
Statistics
Matches: 161, Mismatches: 35, Indels: 19
0.75 0.16 0.09
Matches are distributed among these distances:
49 21 0.13
50 15 0.09
52 2 0.01
53 19 0.12
54 30 0.19
55 72 0.45
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (54 bp):
ACCTTACCAATGCCATGCCTTGGCATGGTCTTACATGGGATCCTTGCCTTAGAA
Found at i:26399298 original size:32 final size:32
Alignment explanation
Indices: 26399254--26399319 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
26399244 AATTGAGCAT
*
26399254 ACGGGCGTGTGTCTTGGATGTGTAAATCCTAC
1 ACGGGCGCGTGTCTTGGATGTGTAAATCCTAC
*
26399286 ACGGGCGCGTGTCTTGGTTGTGTAAATCCTAC
1 ACGGGCGCGTGTCTTGGATGTGTAAATCCTAC
26399318 AC
1 AC
26399320 CTAATTTTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.18, C:0.21, G:0.30, T:0.30
Consensus pattern (32 bp):
ACGGGCGCGTGTCTTGGATGTGTAAATCCTAC
Found at i:26401208 original size:27 final size:27
Alignment explanation
Indices: 26401156--26401208 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
26401146 TTGAAATTAA
* **
26401156 AAGGTTAATTAAGTAAATTAACAAATT
1 AAGGTTAATTAAATAAAGCAACAAATT
26401183 AAGGTTAATTCAAATAAAGCAA-AAAT
1 AAGGTTAATT-AAATAAAGCAACAAAT
26401209 GATCATCATC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 14 0.64
28 8 0.36
ACGTcount: A:0.55, C:0.06, G:0.11, T:0.28
Consensus pattern (27 bp):
AAGGTTAATTAAATAAAGCAACAAATT
Found at i:26402405 original size:24 final size:24
Alignment explanation
Indices: 26402378--26402431 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
26402368 TAAATTGGTG
26402378 GAATTCATGT-TTAA-TCTTTGGATT
1 GAATT-ATGTGTTAAGT-TTTGGATT
26402402 GAATATATGTGTTAAGTTTTGGATT
1 GAAT-TATGTGTTAAGTTTTGGATT
*
26402427 AAATT
1 GAATT
26402432 TGAATTGCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
24 9 0.35
25 16 0.62
26 1 0.04
ACGTcount: A:0.30, C:0.04, G:0.19, T:0.48
Consensus pattern (24 bp):
GAATTATGTGTTAAGTTTTGGATT
Found at i:26403183 original size:13 final size:13
Alignment explanation
Indices: 26403165--26403203 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
26403155 TGGGTAGAGA
26403165 CACAGGCATGTGT
1 CACAGGCATGTGT
26403178 CACAGGCATGTGT
1 CACAGGCATGTGT
*
26403191 CACAGCCATGTGT
1 CACAGGCATGTGT
26403204 GACACACGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (13 bp):
CACAGGCATGTGT
Found at i:26406947 original size:15 final size:15
Alignment explanation
Indices: 26406927--26406964 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
26406917 TTAGCATTTA
*
26406927 AATTTTTTAATACTT
1 AATTTTTTAACACTT
*
26406942 AA-TTTTTAACATTT
1 AATTTTTTAACACTT
26406956 AATTTTTTA
1 AATTTTTTA
26406965 TTTTTCAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (15 bp):
AATTTTTTAACACTT
Found at i:26416279 original size:35 final size:35
Alignment explanation
Indices: 26416233--26416304 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
26416223 TTCTAAGATA
26416233 GGCGCATGGTAGTCCCTATGCTATGCATCCCGGTG
1 GGCGCATGGTAGTCCCTATGCTATGCATCCCGGTG
26416268 GGCGCATGGTAGTCCCTATGCTATGCATCCCGGTG
1 GGCGCATGGTAGTCCCTATGCTATGCATCCCGGTG
26416303 GG
1 GG
26416305 AACAAGATGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.14, C:0.28, G:0.33, T:0.25
Consensus pattern (35 bp):
GGCGCATGGTAGTCCCTATGCTATGCATCCCGGTG
Found at i:26421248 original size:14 final size:14
Alignment explanation
Indices: 26421229--26421263 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
26421219 TTAGCATTTA
*
26421229 AATTTTTAATACTT
1 AATTTTTAACACTT
*
26421243 AATTTTTAACATTT
1 AATTTTTAACACTT
26421257 AATTTTT
1 AATTTTT
26421264 TTATTTTTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (14 bp):
AATTTTTAACACTT
Found at i:26431352 original size:44 final size:44
Alignment explanation
Indices: 26431287--26431370 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
26431277 TTGATATCTC
* * *
26431287 AAAGTCCATGGTTGTACCATGGTAATTAAGGAAGAATTGACGGA
1 AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGACGGA
* *
26431331 AAAGTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGA
1 AAAGTCCATGGTT-ATAACATGGCAATTAAGGAAGAATTGA
26431371 TGGTTAAGGA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 3 0.09
44 31 0.91
ACGTcount: A:0.37, C:0.12, G:0.25, T:0.26
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGACGGA
Found at i:26431572 original size:47 final size:47
Alignment explanation
Indices: 26431510--26431631 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
26431500 GCATTGGCAC
*
26431510 TAAGACAAGGGTACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
26431557 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
26431604 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
26431632 CCAAGGCATG
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:26431739 original size:55 final size:54
Alignment explanation
Indices: 26431610--26431806 Score: 245
Period size: 54 Copynumber: 3.6 Consensus size: 54
26431600 TTGGTAAGAT
* * * *
26431610 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * *
26431664 AAGGAAATCATGTAAGACCATGTCAAGACATGTCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * *
26431719 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
26431772 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
26431807 ATGGTAAGTT
Statistics
Matches: 123, Mismatches: 17, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
52 4 0.03
53 33 0.27
54 41 0.33
55 41 0.33
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:26431792 original size:53 final size:53
Alignment explanation
Indices: 26431610--26431818 Score: 231
Period size: 53 Copynumber: 3.9 Consensus size: 53
26431600 TTGGTAAGAT
* * *
26431610 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAG-TTCATAAGGC
* * * * *
26431664 AAGGAAATCATGTAAGACCATGTCAAGACATGTCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-C-ATAAGGC
* * * *
26431719 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCATAAGGC
* * * *
26431772 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCA
26431819 AAAAGGAAAA
Statistics
Matches: 132, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
52 4 0.03
53 45 0.34
54 39 0.30
55 40 0.30
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCATAAGGC
Found at i:26433788 original size:20 final size:20
Alignment explanation
Indices: 26433763--26433826 Score: 74
Period size: 20 Copynumber: 3.1 Consensus size: 20
26433753 CACAAACGTG
26433763 CCCCTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTCGGTA
* * ** *
26433783 CCCCTGAATTGCACTTATGTG
1 CCCCTG-TTTGTACTTCGGTA
26433804 CCCCTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTCGGTA
26433824 CCC
1 CCC
26433827 TTGAATTGCA
Statistics
Matches: 33, Mismatches: 10, Indels: 2
0.73 0.22 0.04
Matches are distributed among these distances:
20 18 0.55
21 15 0.45
ACGTcount: A:0.12, C:0.33, G:0.19, T:0.36
Consensus pattern (20 bp):
CCCCTGTTTGTACTTCGGTA
Found at i:26433805 original size:41 final size:41
Alignment explanation
Indices: 26433746--26433902 Score: 215
Period size: 41 Copynumber: 3.8 Consensus size: 41
26433736 AGATTATTAT
*
26433746 TGAATTGCACAAACGTGCCCCTGTTTGTACTTCGGTACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * *
26433787 TGAATTGCACTTATGTGCCCCTGTTTGTACTTCGGTACCCT
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * *
26433828 TGAATTGCACATATGTGCCCCTGTTTATACTTCAGTTCCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * *
26433869 CGAATTGCACTTACGTGCCCTTGTTTGTACTTCG
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCG
26433903 ATGCCCTTGA
Statistics
Matches: 101, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 101 1.00
ACGTcount: A:0.17, C:0.29, G:0.18, T:0.36
Consensus pattern (41 bp):
TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
Found at i:26433807 original size:21 final size:21
Alignment explanation
Indices: 26433783--26433850 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 21
26433773 TACTTCGGTA
26433783 CCCCTGAATTGCACTTATGTG
1 CCCCTGAATTGCACTTATGTG
* * ** *
26433804 CCCCTG-TTTGTACTTCGGTA
1 CCCCTGAATTGCACTTATGTG
* *
26433824 CCCTTGAATTGCACATATGTG
1 CCCCTGAATTGCACTTATGTG
26433845 CCCCTG
1 CCCCTG
26433851 TTTATACTTC
Statistics
Matches: 33, Mismatches: 13, Indels: 2
0.69 0.27 0.04
Matches are distributed among these distances:
20 14 0.42
21 19 0.58
ACGTcount: A:0.16, C:0.31, G:0.19, T:0.34
Consensus pattern (21 bp):
CCCCTGAATTGCACTTATGTG
Found at i:26433887 original size:82 final size:82
Alignment explanation
Indices: 26433745--26433915 Score: 252
Period size: 82 Copynumber: 2.1 Consensus size: 82
26433735 AAGATTATTA
* * * *
26433745 TTGAATTGCACAAACGTGCCCCTGTTTGTACTTCGGTACCCCTGAATTGCACTTATGTGCCCCTG
1 TTGAATTGCACAAACGTGCCCCTGTTTATACTTCAGTACCCCCGAATTGCACTTACGTGCCCCTG
*
26433810 TTTGTACTTCGGTACCC
66 TTTGTACTTCGATACCC
* * * *
26433827 TTGAATTGCACATATGTGCCCCTGTTTATACTTCAGTTCCCCCGAATTGCACTTACGTGCCCTTG
1 TTGAATTGCACAAACGTGCCCCTGTTTATACTTCAGTACCCCCGAATTGCACTTACGTGCCCCTG
*
26433892 TTTGTACTTCGATGCCC
66 TTTGTACTTCGATACCC
26433909 TTGAATT
1 TTGAATT
26433916 TTTTTTGTGC
Statistics
Matches: 79, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
82 79 1.00
ACGTcount: A:0.18, C:0.28, G:0.18, T:0.36
Consensus pattern (82 bp):
TTGAATTGCACAAACGTGCCCCTGTTTATACTTCAGTACCCCCGAATTGCACTTACGTGCCCCTG
TTTGTACTTCGATACCC
Found at i:26434718 original size:13 final size:13
Alignment explanation
Indices: 26434700--26434724 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26434690 GCACACAAGT
26434700 GTGTGACTTGGCC
1 GTGTGACTTGGCC
26434713 GTGTGACTTGGC
1 GTGTGACTTGGC
26434725 TATGTAACCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.20, G:0.40, T:0.32
Consensus pattern (13 bp):
GTGTGACTTGGCC
Found at i:26438771 original size:17 final size:19
Alignment explanation
Indices: 26438749--26438783 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
26438739 CTAATTTAAC
26438749 CATTCTC-CAT-TTTCTCT
1 CATTCTCTCATCTTTCTCT
26438766 CATTCTCTCATCTTTCTC
1 CATTCTCTCATCTTTCTC
26438784 AAATTGTTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 3 0.19
19 6 0.38
ACGTcount: A:0.11, C:0.37, G:0.00, T:0.51
Consensus pattern (19 bp):
CATTCTCTCATCTTTCTCT
Found at i:26441114 original size:27 final size:27
Alignment explanation
Indices: 26440801--26441129 Score: 346
Period size: 27 Copynumber: 12.2 Consensus size: 27
26440791 AAAGTACTCC
*
26440801 CGATTTACAGAATTCCTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
26440828 C-AGTTTACAGAATTACTGTTTTAGCCT
1 CGA-TTTACAGAATTACTGTTTTACCCT
* *
26440855 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
** * *
26440882 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
26440909 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACTGTTTTACCCT
* * *
26440936 TGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
26440963 C-AGTTTACAGACTTACTGTTTTACCCT
1 CGA-TTTACAGAATTACTGTTTTACCCT
*
26440990 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
** *
26441017 CGATTTGTAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* *
26441044 TGATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* * *
26441071 C-AGTTTATAAAACTA-TCGTTTTACCCT
1 CGA-TTTACAGAATTACT-GTTTTACCCT
*
26441098 CGATTTACAGAATTA-TCATTTTACCCT
1 CGATTTACAGAATTACT-GTTTTACCCT
*
26441125 TGATT
1 CGATT
26441130 GTGAAATTAC
Statistics
Matches: 252, Mismatches: 41, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
26 5 0.02
27 243 0.96
28 4 0.02
ACGTcount: A:0.26, C:0.22, G:0.11, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACTGTTTTACCCT
Found at i:26441164 original size:27 final size:27
Alignment explanation
Indices: 26441134--26441328 Score: 212
Period size: 27 Copynumber: 7.2 Consensus size: 27
26441124 TTGATTGTGA
26441134 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
26441161 AATTTCTAAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
26441188 AATTACTGAAATACCCTTATAGGATAA
1 AATTACTGAAATACCCCTGTAGGGTAG
**
26441215 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
26441242 AATTA-TCGAAATACCCTTGTAGGGTAA
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
26441269 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
26441296 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
26441323 AATTAC
1 AATTAC
26441329 CATTTTGGCC
Statistics
Matches: 139, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
27 139 1.00
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:26441202 original size:54 final size:54
Alignment explanation
Indices: 26441134--26441330 Score: 270
Period size: 54 Copynumber: 3.6 Consensus size: 54
26441124 TTGATTGTGA
* * * * *
26441134 AATTACTGAAATACCCCTGTAGGGTAGAATTTCTAAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAG
* *
26441188 AATTACTGAAATACCCTTATAGGATAAAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAG
* *
26441242 AATTA-TCGAAATACCCTTGTAGGGTAAAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAG
* * *
26441296 AATTACCGAGATACCCTTGTGGGGTAAAATTACCA
1 AATTACTGAAATACCCTTGTAGGGTAAAATTACCA
26441331 TTTTGGCCCT
Statistics
Matches: 125, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 124 0.99
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAG
Found at i:26441571 original size:27 final size:27
Alignment explanation
Indices: 26441531--26441609 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 27
26441521 AGGAAGCGTT
*
26441531 CTGGTGGCTATGCCACAAATATCTGT-G
1 CTGGTGGCTCTGCCAC-AATATCTGTAG
*
26441558 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAG
* * *
26441585 TTGGTGACTCTGTCACAATATCTGT
1 CTGGTGGCTCTGCCACAATATCTGT
26441610 TGACCGATCG
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 9 0.20
27 37 0.80
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAG
Found at i:26441954 original size:27 final size:26
Alignment explanation
Indices: 26441924--26441989 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 26
26441914 GTGGGTTTGC
*
26441924 CACATTATCTG-ATTATGGTGGCTCTGT
1 CACA-TATCTGTA-TATGGTGACTCTGT
*
26441951 CACAATATCTGTATCTGGTGACTCTGT
1 CAC-ATATCTGTATATGGTGACTCTGT
26441978 CACGATATCTGT
1 CAC-ATATCTGT
26441990 TCTGGCAGCC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
27 32 0.94
28 2 0.06
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.38
Consensus pattern (26 bp):
CACATATCTGTATATGGTGACTCTGT
Found at i:26442146 original size:6 final size:6
Alignment explanation
Indices: 26442137--26442231 Score: 124
Period size: 6 Copynumber: 15.8 Consensus size: 6
26442127 CTGTCACGTA
* *
26442137 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
26442185 ATTCTG -TTACTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCT
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCT
26442232 CATTTTGGTT
Statistics
Matches: 79, Mismatches: 4, Indels: 12
0.83 0.04 0.13
Matches are distributed among these distances:
5 6 0.08
6 68 0.86
7 5 0.06
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:26442178 original size:24 final size:24
Alignment explanation
Indices: 26442146--26442231 Score: 138
Period size: 24 Copynumber: 3.6 Consensus size: 24
26442136 AATTCTGATT
**
26442146 CTGATTCTGATTCTG-TTACTAATA
1 CTGATTCTGATTCTGATT-CTGTTA
26442170 CTGATTCTGATTCTGATTCTGTTA
1 CTGATTCTGATTCTGATTCTGTTA
26442194 CTGATTCTGATTCTGATTCTGTTA
1 CTGATTCTGATTCTGATTCTGTTA
26442218 CTGATTCTGATTCT
1 CTGATTCTGATTCT
26442232 CATTTTGGTT
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
24 57 0.97
25 2 0.03
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (24 bp):
CTGATTCTGATTCTGATTCTGTTA
Found at i:26442231 original size:30 final size:30
Alignment explanation
Indices: 26442116--26442214 Score: 162
Period size: 30 Copynumber: 3.3 Consensus size: 30
26442106 ATTCACATTA
*
26442116 TGATTCTGATTCTGTCACGTAATTCTGATTC
1 TGATTCTGATTCTGTTAC-TAATTCTGATTC
*
26442147 TGATTCTGATTCTGTTACTAATACTGATTC
1 TGATTCTGATTCTGTTACTAATTCTGATTC
*
26442177 TGATTCTGATTCTGTTACTGATTCTGATTC
1 TGATTCTGATTCTGTTACTAATTCTGATTC
26442207 TGATTCTG
1 TGATTCTG
26442215 TTACTGATTC
Statistics
Matches: 64, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
30 47 0.73
31 17 0.27
ACGTcount: A:0.19, C:0.17, G:0.16, T:0.47
Consensus pattern (30 bp):
TGATTCTGATTCTGTTACTAATTCTGATTC
Found at i:26444305 original size:54 final size:54
Alignment explanation
Indices: 26444247--26444596 Score: 418
Period size: 54 Copynumber: 6.5 Consensus size: 54
26444237 AAGTACTCCT
* * * *
26444247 GATTTACAGAATTACCATTTTACCCCCAGTTTATAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACTGTTTTACCCTC
* * ** *
26444301 GATTTATAGAATTACCGTTTTACGCTC-GATTTGTAAAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTCAG-TTTACAAAATTACTGTTTTACCCTC
* * * *
26444355 AATTTATAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACTGTTTTACCCTC
* * *
26444409 GATTTACAGAATTACTGTTTTACTCTCAGTTTACAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACTGTTTTACCCTC
* * ** * *
26444463 GATTTACAGAATTATCGTTTTACCCT-TGATTTGTAAAATTACTATTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTCAG-TTTACAAAATTACTGTTTTACCCTC
* * *
26444517 GATTTATAGAATTACTGGTTTACCCTCAGTTTACAAAATTA-TCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACT-GTTTTACCCTC
*
26444571 GATTTACAGAATTATCGTTTTACCCT
1 GATTTACAGAATTACCGTTTTACCCT
26444597 TGATTGTGAA
Statistics
Matches: 250, Mismatches: 41, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
53 3 0.01
54 245 0.98
55 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.42
Consensus pattern (54 bp):
GATTTACAGAATTACCGTTTTACCCTCAGTTTACAAAATTACTGTTTTACCCTC
Found at i:26444341 original size:81 final size:81
Alignment explanation
Indices: 26444256--26444575 Score: 376
Period size: 81 Copynumber: 4.0 Consensus size: 81
26444246 TGATTTACAG
*
26444256 AATTACCATTTTACCCCCAGTTTATAGAATTACTGTTTTACCCTC-GATTTATAGAATTACCGTT
1 AATTACCATTTTACCCCCAGTTTATAGAATTACTGTTTTACCCTCAG-TTTACAGAATTACCGTT
*
26444320 TTACGCTCGATTTGTAA
65 TTACCCTCGATTTGTAA
* * * * **
26444337 AATTACCGTTTTACCCTCAATTTATAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTATTT
1 AATTACCATTTTACCCCCAGTTTATAGAATTACTGTTTTACCCTCAGTTTACAGAATTACCGTTT
** *
26444402 TACCCTCGATTTACAG
66 TACCCTCGATTTGTAA
** * * * *
26444418 AATTACTGTTTTACTCTCAGTTTACAGAATTACTGTTTTACCCTC-GATTTACAGAATTATCGTT
1 AATTACCATTTTACCCCCAGTTTATAGAATTACTGTTTTACCCTCAG-TTTACAGAATTACCGTT
*
26444482 TTACCCTTGATTTGTAA
65 TTACCCTCGATTTGTAA
* ** * * *
26444499 AATTACTATTTTA-CCCTTGATTTATAGAATTACTGGTTTACCCTCAGTTTACAAAATTATCGTT
1 AATTACCATTTTACCCCCAG-TTTATAGAATTACTGTTTTACCCTCAGTTTACAGAATTACCGTT
26444563 TTACCCTCGATTT
65 TTACCCTCGATTT
26444576 ACAGAATTAT
Statistics
Matches: 203, Mismatches: 32, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
80 3 0.01
81 198 0.98
82 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.42
Consensus pattern (81 bp):
AATTACCATTTTACCCCCAGTTTATAGAATTACTGTTTTACCCTCAGTTTACAGAATTACCGTTT
TACCCTCGATTTGTAA
Found at i:26444601 original size:27 final size:26
Alignment explanation
Indices: 26444247--26444601 Score: 331
Period size: 27 Copynumber: 13.2 Consensus size: 26
26444237 AAGTACTCCT
*
26444247 GATTTACAGAATTACCATTTTACCC-C
1 GATTTACAGAATTA-CGTTTTACCCTC
* *
26444273 CAGTTTATAGAATTACTGTTTTACCCTC
1 GA-TTTACAGAATTAC-GTTTTACCCTC
* *
26444301 GATTTATAGAATTACCGTTTTACGCTC
1 GATTTACAGAATTA-CGTTTTACCCTC
** *
26444328 GATTTGTAAAATTACCGTTTTACCCTC
1 GATTTACAGAATTA-CGTTTTACCCTC
* *
26444355 AATTTATAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTA-CGTTTTACCCTC
*
26444382 -AGTTTACAGAATTACTATTTTACCCTC
1 GA-TTTACAGAATTAC-GTTTTACCCTC
*
26444409 GATTTACAGAATTACTGTTTTACTCTC
1 GATTTACAGAATTAC-GTTTTACCCTC
26444436 -AGTTTACAGAATTACTGTTTTACCCTC
1 GA-TTTACAGAATTAC-GTTTTACCCTC
*
26444463 GATTTACAGAATTATCGTTTTACCCTT
1 GATTTACAGAATTA-CGTTTTACCCTC
** * * *
26444490 GATTTGTAAAATTACTATTTTACCCTT
1 GATTTACAGAATTAC-GTTTTACCCTC
* *
26444517 GATTTATAGAATTACTGGTTTACCCTC
1 GATTTACAGAATTAC-GTTTTACCCTC
*
26444544 -AGTTTACAAAATTATCGTTTTACCCTC
1 GA-TTTACAGAATTA-CGTTTTACCCTC
*
26444571 GATTTACAGAATTATCGTTTTACCCTT
1 GATTTACAGAATTA-CGTTTTACCCTC
26444598 GATT
1 GATT
26444602 GTGAAATTAC
Statistics
Matches: 284, Mismatches: 31, Indels: 27
0.83 0.09 0.08
Matches are distributed among these distances:
26 7 0.02
27 269 0.95
28 8 0.03
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.42
Consensus pattern (26 bp):
GATTTACAGAATTACGTTTTACCCTC
Found at i:26444636 original size:27 final size:27
Alignment explanation
Indices: 26444606--26444801 Score: 257
Period size: 27 Copynumber: 7.3 Consensus size: 27
26444596 TTGATTGTGA
*
26444606 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
26444633 AATTTCCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
26444660 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
26444687 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
26444714 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
26444741 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
26444768 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
26444795 AATTACC
1 AATTACC
26444802 ATTGTGGCCC
Statistics
Matches: 146, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:26445038 original size:27 final size:26
Alignment explanation
Indices: 26445000--26445082 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
26444990 CGGAGGAAGC
* *
26445000 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGTCAC-AATATCT
26445027 GTTCTGGTGGCTCTGTCACAATATCT
1 GTTCTGGTGGCTCTGTCACAATATCT
* *
26445053 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGTCACAATATCT
26445080 GTT
1 GTT
26445083 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGTCACAATATCT
Found at i:26445202 original size:22 final size:22
Alignment explanation
Indices: 26445170--26445228 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
26445160 CCCGTTATTA
*
26445170 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
26445192 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
26445214 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
26445229 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:26445618 original size:6 final size:6
Alignment explanation
Indices: 26445609--26445752 Score: 145
Period size: 6 Copynumber: 23.8 Consensus size: 6
26445599 CTGTCACGTA
* *
26445609 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
* * *
26445657 ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA
1 ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG
*
26445706 ATAT-TG ATTCTG ATTCTG ATTCTG -TTATTG ATTCTG ATTCTG ATTCT
1 AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
26445753 CATTTTGGTT
Statistics
Matches: 115, Mismatches: 12, Indels: 22
0.77 0.08 0.15
Matches are distributed among these distances:
5 8 0.07
6 99 0.86
7 6 0.05
8 2 0.02
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:26445692 original size:67 final size:67
Alignment explanation
Indices: 26445584--26445729 Score: 265
Period size: 67 Copynumber: 2.2 Consensus size: 67
26445574 TTGCATTCAC
* *
26445584 ATTCTGACTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
26445649 TG
66 TG
*
26445651 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
26445716 TG
66 TG
26445718 ATTCTGATTCTG
1 ATTCTGATTCTG
26445730 TTATTGATTC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 76 1.00
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.47
Consensus pattern (67 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
TG
Found at i:26445770 original size:30 final size:30
Alignment explanation
Indices: 26445584--26445773 Score: 177
Period size: 30 Copynumber: 6.1 Consensus size: 30
26445574 TTGCATTCAC
* * *
26445584 ATTCTGACTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-CAATTCTG
*
26445615 ATTCTGATTCTGATTCTGTTACTAATACTGATTCTG
1 ATTCTGATTCTGATTCTGTTAC-----C-AATTCTG
*
26445651 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACC-AATTCTG
*
26445682 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACCAAT-TCTG
***
26445712 ATTCTGATTCTGATTCTGTTATTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
* *
26445742 ATTCTGATTCTCATTTTGGTT-CCAATTCTG
1 ATTCTGATTCTGATTCT-GTTACCAATTCTG
26445772 AT
1 AT
26445774 AATGTTTCTT
Statistics
Matches: 135, Mismatches: 16, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
29 1 0.01
30 54 0.40
31 53 0.39
36 27 0.20
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACCAATTCTG
Found at i:26446813 original size:21 final size:21
Alignment explanation
Indices: 26446787--26446827 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
26446777 TTATCAACAT
26446787 AAATGGAAA-GATGGGAAGAGA
1 AAATGGAAAGGA-GGGAAGAGA
26446808 AAATGGAAAGGAGGGAAGAG
1 AAATGGAAAGGAGGGAAGAG
26446828 GGTGAAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.51, C:0.00, G:0.41, T:0.07
Consensus pattern (21 bp):
AAATGGAAAGGAGGGAAGAGA
Found at i:26447508 original size:132 final size:126
Alignment explanation
Indices: 26447325--26447635 Score: 309
Period size: 132 Copynumber: 2.4 Consensus size: 126
26447315 CACCGTTCGA
* *** * ** **
26447325 TGACGTAAGATCACGACCTATGTGGCTCATCGACCTAAGATCACAATCAAAATTATTCTCGTCCG
1 TGACATAAGATCACGACCTATGTGGCTTGCCAACCTAAGATCGTAGCCAAAATTATTCTCGTCCG
* * ** *
26447390 CTGACCTAAGATCACAACCGATAGAACTTGAC-GACCTAAGATTGCGATTGAAATTATTTGAGTC
66 CTGACCTAAGATCACAACCCATAGAAC-TCACTGACCTAAGATCACGACT-AAA--A-TT-A-TC
26447454 CGC
124 CGC
* * * * * **
26447457 TGACATAAGATCATGGCCTATGTGGCTTGCTAACCTAAGATCGTAGCCAAAATTATTTTGGTTTG
1 TGACATAAGATCACGACCTATGTGGCTTGCCAACCTAAGATCGTAGCCAAAATTATTCTCGTCCG
* * * * *
26447522 CTGACCTAAGATCACAACCCATATAGCTCACTTACCTAAGATCACGACTAAAATTATTCGT
66 CTGACCTAAGATCACAACCCATAGAACTCACTGACCTAAGATCACGACTAAAATTATCCGC
*
26447583 TGACATAAGATCACGACCTATGTGGCTTGCCGACCTAAGATCGTAGCCAAAAT
1 TGACATAAGATCACGACCTATGTGGCTTGCCAACCTAAGATCGTAGCCAAAAT
26447636 CCCATGGCTA
Statistics
Matches: 148, Mismatches: 30, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
126 52 0.35
127 1 0.01
128 2 0.01
129 1 0.01
131 6 0.04
132 86 0.58
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (126 bp):
TGACATAAGATCACGACCTATGTGGCTTGCCAACCTAAGATCGTAGCCAAAATTATTCTCGTCCG
CTGACCTAAGATCACAACCCATAGAACTCACTGACCTAAGATCACGACTAAAATTATCCGC
Found at i:26459247 original size:40 final size:40
Alignment explanation
Indices: 26459203--26459385 Score: 296
Period size: 40 Copynumber: 4.6 Consensus size: 40
26459193 GCCACTAGCT
* * *
26459203 CAAATGCCTTCGGGACTTAGCCCTGTTATAGTAGCTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
* *
26459243 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
26459282 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
*
26459322 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
*
26459362 CGAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
26459386 AAATTAGCCA
Statistics
Matches: 133, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
39 36 0.27
40 97 0.73
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
Found at i:26459301 original size:79 final size:80
Alignment explanation
Indices: 26459203--26459385 Score: 296
Period size: 79 Copynumber: 2.3 Consensus size: 80
26459193 GCCACTAGCT
* * * *
26459203 CAAATGCCTTCGGGACTTAGCCCTGTTATAGTAGCTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
26459268 -TATAATAACTCGCA
66 ATATAATAACTCGCA
26459282 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
* *
26459347 ATATAGTAGCTCGCA
66 ATATAATAACTCGCA
*
26459362 CGAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
26459386 AAATTAGCCA
Statistics
Matches: 96, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
79 61 0.64
80 35 0.36
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
ATATAATAACTCGCA
Found at i:26459408 original size:40 final size:39
Alignment explanation
Indices: 26459203--26459426 Score: 265
Period size: 40 Copynumber: 5.6 Consensus size: 39
26459193 GCCACTAGCT
* * *
26459203 CAAATGCCTTCGGGACTTAGCCCTGTTATAGTAGCTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAGCTCGCA
* *
26459243 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAGCTCGCA
26459282 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAGCTCGCA
*
26459322 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAGCTCGCA
* * * * *
26459362 CGAATGCCTTCGGGACTTAGCCCGAAATTAGCCA-CTAGCT
1 CAAATGCCTTCGGGACTTAGCCCG-GATTAG-TAGCTCGCA
26459402 CAAATG-CTCTCGGGACTTAGCCCGG
1 CAAATGCCT-TCGGGACTTAGCCCGG
26459427 TTATCATCCG
Statistics
Matches: 165, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
39 38 0.23
40 124 0.75
41 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAGCTCGCA
Found at i:26459415 original size:80 final size:79
Alignment explanation
Indices: 26459203--26459427 Score: 278
Period size: 79 Copynumber: 2.8 Consensus size: 79
26459193 GCCACTAGCT
* * *
26459203 CAAATGCCTTCGGGACTTAGCCCTG-TTATAGTAGCTTGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCC-GAATATAGCAGCTAGCACAAATGCCTTCGGGACTTAGCCCG
26459267 GTATAATAACTCGCA
65 GTATAATAACTCGCA
* * * *
26459282 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGAATATAGCAGCTAGCACAAATGCCTTCGGGACTTAGCCCGG
* *
26459347 ATATAGTAGCTCGCA
66 -TATAATAACTCGCA
* *
26459362 CGAATGCCTTCGGGACTTAGCCCGAA-ATTAGCCA-CTAGCTCAAATG-CTCTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCCCGAATA-TAG-CAGCTAGCACAAATGCCT-TCGGGACTTAGCC
26459424 CGGT
63 CGGT
26459428 TATCATCCGA
Statistics
Matches: 130, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 64 0.49
80 64 0.49
81 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGAATATAGCAGCTAGCACAAATGCCTTCGGGACTTAGCCCGG
TATAATAACTCGCA
Found at i:26467381 original size:48 final size:48
Alignment explanation
Indices: 26467295--26467515 Score: 279
Period size: 48 Copynumber: 4.7 Consensus size: 48
26467285 TATCATATCG
**
26467295 ATGCCATGTCCCAGACATGG---T-CATGAAATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
** * * * *
26467339 ACACCATATCTCAGATATGGTCTTACATGGGATCGCATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
26467387 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
** * * *
26467435 ATGCCATGTCTTAGACATGGTCTTACTTAGGATCACATATCAATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* *
26467483 GTGCCATGTCCCATACATGGTCTTACATGGGAT
1 ATGCCATGTCCCAGACATGGTCTTACATGGGAT
26467516 TTCAATGCCA
Statistics
Matches: 148, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
44 15 0.10
47 1 0.01
48 132 0.89
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
Found at i:26467540 original size:37 final size:37
Alignment explanation
Indices: 26467499--26467583 Score: 125
Period size: 37 Copynumber: 2.3 Consensus size: 37
26467489 TGTCCCATAC
* *
26467499 ATGGTCTTACATGGGATTTCAATGCCATAGCCCAGCT
1 ATGGTCTTACATGGCATTACAATGCCATAGCCCAGCT
* * *
26467536 ATGGTCTTACATGTCATTACGATGCCATAGCCTAGCT
1 ATGGTCTTACATGGCATTACAATGCCATAGCCCAGCT
26467573 ATGGTCTTACA
1 ATGGTCTTACA
26467584 CTTACTCAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.32
Consensus pattern (37 bp):
ATGGTCTTACATGGCATTACAATGCCATAGCCCAGCT
Found at i:26470077 original size:48 final size:48
Alignment explanation
Indices: 26470002--26470177 Score: 210
Period size: 48 Copynumber: 3.7 Consensus size: 48
26469992 CAGTTAATGA
*
26470002 GAGCCAATGTAAGACCATGTCTAGGACATGGCATCGGCGTTGATATGT
1 GAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGT
* * **
26470050 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCGTTGATACAT
1 GAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGT
* * * * *
26470098 GTGCCAATGTAAGACCATATCTGGGATATGGCATCGGCATCGATATGT
1 GAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGT
** * *
26470146 GATTTC-ATGTAAGACCATATCTGGGATATGGC
1 GA-GCCAATGTAAGACCATGTCTGGGACATGGC
26470178 GTTGATATGA
Statistics
Matches: 110, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
48 109 0.99
49 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (48 bp):
GAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGT
Found at i:26470171 original size:96 final size:96
Alignment explanation
Indices: 26470004--26470177 Score: 242
Period size: 96 Copynumber: 1.8 Consensus size: 96
26469994 GTTAATGAGA
* * * *
26470004 GCCAATGTAAGACCATGTCTAGGACATGGCATCGGCGTTGATATGTGAGCCAGTGTAAGACCATG
1 GCCAATGTAAGACCATATCTAGGACATGGCATCGGCATCGATATGTGAGCCAGTGTAAGACCATA
*
26470069 TTTGGGACATGGCATCGGCGTTGATACATGT
66 TCTGGGACATGGCATCGGCGTTGATACATGT
* * **
26470100 GCCAATGTAAGACCATATCTGGGATATGGCATCGGCATCGATATGTGATTTCA-TGTAAGACCAT
1 GCCAATGTAAGACCATATCTAGGACATGGCATCGGCATCGATATGTGA-GCCAGTGTAAGACCAT
*
26470164 ATCTGGGATATGGC
65 ATCTGGGACATGGC
26470178 GTTGATATGA
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
96 65 0.97
97 2 0.03
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.27
Consensus pattern (96 bp):
GCCAATGTAAGACCATATCTAGGACATGGCATCGGCATCGATATGTGAGCCAGTGTAAGACCATA
TCTGGGACATGGCATCGGCGTTGATACATGT
Found at i:26470186 original size:42 final size:45
Alignment explanation
Indices: 26470104--26470212 Score: 125
Period size: 42 Copynumber: 2.4 Consensus size: 45
26470094 ACATGTGCCA
*
26470104 ATGTAAGACCATATCTGGGATATGGCATCGGCATCGATATGTGATTTC
1 ATGTAAGACCATATCTGGGATATGG-A-CGG-ATCGATATGAGATTTC
* *
26470152 ATGTAAGACCATATCTGGGATATGG-C-G-TTGATATGAGATTTT
1 ATGTAAGACCATATCTGGGATATGGACGGATCGATATGAGATTTC
* *
26470194 GTGTAAGACCATGTCTGGG
1 ATGTAAGACCATATCTGGG
26470213 GCATGGCATC
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
42 29 0.52
44 1 0.02
45 1 0.02
48 25 0.45
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.32
Consensus pattern (45 bp):
ATGTAAGACCATATCTGGGATATGGACGGATCGATATGAGATTTC
Found at i:26472710 original size:40 final size:40
Alignment explanation
Indices: 26472616--26472840 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 40
26472606 TATTCGAATG
* *
26472616 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * * *
26472657 ATAACTGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* * *
26472697 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
26472737 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
26472777 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
26472817 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
26472841 CTTGCGCAAG
Statistics
Matches: 155, Mismatches: 27, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 126 0.81
41 28 0.18
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:26472800 original size:80 final size:80
Alignment explanation
Indices: 26472616--26472876 Score: 285
Period size: 80 Copynumber: 3.3 Consensus size: 80
26472606 TATTCGAATG
* * * * *
26472616 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACTGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
26472681 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * * *
26472697 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
26472762 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * *
26472777 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * * *
26472842 TT-GCGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
26472856 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
26472877 ATTACTTGAG
Statistics
Matches: 151, Mismatches: 27, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
78 14 0.09
79 13 0.09
80 93 0.62
81 31 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:26483080 original size:18 final size:18
Alignment explanation
Indices: 26483054--26483088 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
26483044 CTGATATCTT
26483054 TTTCAAAACTATTTTCAC
1 TTTCAAAACTATTTTCAC
*
26483072 TTTCTAAACTATTTTCA
1 TTTCAAAACTATTTTCA
26483089 TCTCTGTAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.20, G:0.00, T:0.49
Consensus pattern (18 bp):
TTTCAAAACTATTTTCAC
Found at i:26483379 original size:41 final size:42
Alignment explanation
Indices: 26483321--26483404 Score: 152
Period size: 41 Copynumber: 2.0 Consensus size: 42
26483311 ACACTTATTC
*
26483321 ATTTTACAAATGTTTTCTATCATCCATAATCTTAAATAATGA
1 ATTTTACAAATGTTTTCTATCATCCATAATCTTAAACAATGA
26483363 ATTTTA-AAATGTTTTCTATCATCCATAATCTTAAACAATGA
1 ATTTTACAAATGTTTTCTATCATCCATAATCTTAAACAATGA
26483404 A
1 A
26483405 ATTACTTACT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
41 35 0.85
42 6 0.15
ACGTcount: A:0.39, C:0.14, G:0.05, T:0.42
Consensus pattern (42 bp):
ATTTTACAAATGTTTTCTATCATCCATAATCTTAAACAATGA
Found at i:26487223 original size:27 final size:27
Alignment explanation
Indices: 26487193--26487505 Score: 428
Period size: 27 Copynumber: 11.6 Consensus size: 27
26487183 TTAGTTTACC
*
26487193 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
26487220 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
26487247 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
26487274 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
26487301 AAATTACCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
26487328 AAATTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
26487355 AAATCACCAACATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
26487382 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
26487409 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
26487436 AAATTACCAAAATACCACTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
26487463 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
26487490 AAATTACTGAAATACC
1 AAATTACCAAAATACC
26487506 TTTGACCTGT
Statistics
Matches: 251, Mismatches: 35, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 251 1.00
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:26487517 original size:54 final size:54
Alignment explanation
Indices: 26487193--26487560 Score: 420
Period size: 54 Copynumber: 6.8 Consensus size: 54
26487183 TTAGTTTACC
*
26487193 AAATTACCAAAATACCCCT-AGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
26487247 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
26487301 AAATTACCAAAATA-CCCTTAGTTTGTAAAATTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * * *
26487355 AAATCACCAACATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
26487409 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCAC-TAGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACC-CTTGGTTTATA
* ** * *** *
26487463 AAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCTTTGACCTGTA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTATA
*** * *
26487517 AAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCC
1 AAATTACCAAAATACCCCT-GATTTGTAAAATTACCAAAATACCC
26487561 CTAATTTACA
Statistics
Matches: 269, Mismatches: 39, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
53 8 0.03
54 256 0.95
55 5 0.02
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:26487517 original size:81 final size:80
Alignment explanation
Indices: 26487193--26487567 Score: 401
Period size: 81 Copynumber: 4.6 Consensus size: 80
26487183 TTAGTTTACC
* * * * *
26487193 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAA
1 AAATTACCAAAATA-CCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAA
26487258 ATACCCCTGGTTTGTA
65 ATACCCCTGGTTTGTA
* ** * * *
26487274 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATA-CCCTTAGTTTGTAAAATTACTAG
1 AAATTACCAAAATACCC-TAGTTTGTAAAATTACCAAAATACCCCTGA-TTTGTAAAATTACCAA
* *
26487338 AATACCCTTGGTTTATA
64 AATACCCCTGGTTTGTA
* * * *
26487355 AAATCACCAACATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAA
1 AAATTACCAAAATA-CCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAA
26487420 ATACCCCTGGTTTGTA
65 ATACCCCTGGTTTGTA
* **
26487436 AAATTACCAAAATACCACTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAA
1 AAATTACCAAAATACC-CTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAA
** ***
26487501 ATACCTTTGACCTGTA
65 ATACCCCTGGTTTGTA
*** * * * *
26487517 AAATTATTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCTAATTT
1 AAATTACCAAAATACCCTAG-TTTGTAAAATTACCAAAATACCCCTGATTT
26487568 ACAGAATTAC
Statistics
Matches: 246, Mismatches: 42, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
80 11 0.04
81 228 0.93
82 7 0.03
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (80 bp):
AAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAA
TACCCCTGGTTTGTA
Found at i:26487559 original size:27 final size:27
Alignment explanation
Indices: 26487193--26487560 Score: 336
Period size: 27 Copynumber: 13.6 Consensus size: 27
26487183 TTAGTTTACC
*
26487193 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTC-GGTTTGTA
* * *
26487220 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGGTTTGTA
*
26487247 AAATCACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GGTTTGTA
* **
26487274 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGGTTTGTA
**
26487301 AAATTACCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCTCGGTTTGTA
* * * *
26487328 AAATTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGGTTTGTA
* *
26487355 AAATCACCAACATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GGTTTGTA
26487382 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GGTTTGTA
26487409 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GGTTTGTA
*
26487436 AAATTACCAAAATACCACT-AGTTTGTA
1 AAATTACCAAAATACC-CTCGGTTTGTA
* *
26487463 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GGTTTGTA
** * * ***
26487490 AAATTACTGAAATACCTTTGACCTGTA
1 AAATTACCAAAATACCCTCGGTTTGTA
*** **
26487517 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGGTTTGTA
*
26487544 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
26487561 CTAATTTACA
Statistics
Matches: 286, Mismatches: 46, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
26 1 0.00
27 284 0.99
28 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGGTTTGTA
Found at i:26487632 original size:27 final size:27
Alignment explanation
Indices: 26487597--26488142 Score: 783
Period size: 27 Copynumber: 20.3 Consensus size: 27
26487587 CTCGATTTAC
*
26487597 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
26487624 AAATACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
26487651 AATTACCGAAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
26487678 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
26487705 AATTACCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
26487732 AATTATTGCAATACCCATGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
26487759 AATTACCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
26487786 AATTACC-AGAATACCCCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
26487813 AATTACC-AGAATACCCCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
*
26487840 AATTACAGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
26487867 AATTACCGGAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
26487894 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
26487921 AATTATCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
26487948 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
26487975 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
26488002 AATTATCGAAATACCCTTGCAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
26488029 AATTACCGAAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
26488056 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
26488083 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
26488110 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
26488136 AATTACC
1 AATTACC
26488143 ATTTTGCCCC
Statistics
Matches: 475, Mismatches: 42, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
26 16 0.03
27 458 0.96
28 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:26488621 original size:22 final size:22
Alignment explanation
Indices: 26488569--26488633 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
26488559 TTAAAGCTTT
* *
26488569 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTATGTGCCAAC
*
26488591 CT-ACATATGGCTATGTGCCAAC
1 CTGA-TTATGGCTATGTGCCAAC
*
26488613 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTATGTGCCAA
26488634 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.22, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTATGTGCCAAC
Found at i:26488822 original size:27 final size:27
Alignment explanation
Indices: 26488792--26488893 Score: 98
Period size: 27 Copynumber: 3.8 Consensus size: 27
26488782 ATTCTGTTAA
* * *
26488792 GTGGCTTTGCCATATTATCTGTTTCTG
1 GTGGCTATGCCAAAATATCTGTTTCTG
26488819 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCA-AAATATCTGTTTCTG
* * *
26488846 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCAAAATATCTGTTTCTG
* * * *
26488873 GTGACTCTGTCACAATATCTG
1 GTGGCTATGCCAAAATATCTG
26488894 ATAACTGAGC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 8 0.12
27 50 0.77
28 7 0.11
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (27 bp):
GTGGCTATGCCAAAATATCTGTTTCTG
Found at i:26488850 original size:54 final size:53
Alignment explanation
Indices: 26488792--26488893 Score: 132
Period size: 54 Copynumber: 1.9 Consensus size: 53
26488782 ATTCTGTTAA
* * * * *
26488792 GTGGCTTTGCCATATTATCTGTTTCTGGTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGTATCTGGTGACTATGCCAC-AATATCTGTTCTG
* *
26488846 GTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTGTATCTGGTGACTATGCCACAATATCTG
26488894 ATAACTGAGC
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 8 0.20
54 33 0.80
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATCTGTATCTGGTGACTATGCCACAATATCTGTTCTG
Found at i:26489084 original size:31 final size:31
Alignment explanation
Indices: 26489029--26489137 Score: 130
Period size: 31 Copynumber: 3.5 Consensus size: 31
26489019 TTGCATTCAC
* *
26489029 ATTCTGATTTTTTATTTTGTTACCTAATACT-
1 ATTCTGA-TTTTGATTCTGTTACCTAATACTG
*
26489060 AGTTCTGATTTTGATTCTGTTACCTGATACTG
1 A-TTCTGATTTTGATTCTGTTACCTAATACTG
* * * *
26489092 ATTCTTATTTCGATTCTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTTACCTAATACTG
26489123 ATTCTGATTTTGATT
1 ATTCTGATTTTGATT
26489138 TTGATTCTAG
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
31 59 0.89
32 7 0.11
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.52
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTAATACTG
Found at i:26499923 original size:57 final size:56
Alignment explanation
Indices: 26499819--26500066 Score: 196
Period size: 57 Copynumber: 4.3 Consensus size: 56
26499809 CCTCATTTCT
* * * * * *
26499819 AAAAGGATTTAGCCTAGACGGGTAATCCTAATATAAATCTC-TTGAGCATATGTTATG
1 AAAAGGATTTAGCCTGGACGGGTAATCC--AGATCAAGCTCTTTGAGCATATGTCATA
* *
26499876 GAATGGATTTAGCCTGGACGGGTAATCCAGATCAAGCTCTTTAGAGCATATGTCAT-
1 AAAAGGATTTAGCCTGGACGGGTAATCCAGATCAAGCTCTTT-GAGCATATGTCATA
* * * * * *
26499932 AAAAGGATTTAGCCTTGACTGGTAATCCTGA-CTAAGCTCTATTGAGTATAAATATTATA
1 AAAAGGATTTAGCCTGGACGGGTAATCCAGATC-AAGCTCT-TTGAGCAT--ATGTCATA
* * * * * * * *
26499991 GATAGGATTTAGCCCGAACAGGTAATCCAAATCAAGATCTTTAAAGCATATGTCATA
1 AAAAGGATTTAGCCTGGACGGGTAATCCAGATCAAGCTCTTT-GAGCATATGTCATA
*
26500048 AAAAGGATTTAGCTTGGAC
1 AAAAGGATTTAGCCTGGAC
26500067 TAATAATCCT
Statistics
Matches: 149, Mismatches: 33, Indels: 18
0.75 0.17 0.09
Matches are distributed among these distances:
55 9 0.06
56 40 0.27
57 59 0.40
58 7 0.05
59 33 0.22
60 1 0.01
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (56 bp):
AAAAGGATTTAGCCTGGACGGGTAATCCAGATCAAGCTCTTTGAGCATATGTCATA
Found at i:26500015 original size:59 final size:59
Alignment explanation
Indices: 26499820--26500136 Score: 194
Period size: 57 Copynumber: 5.5 Consensus size: 59
26499810 CTCATTTCTA
* * * ** * * * *
26499820 AAAGGATTTAGCCTAGACGGGTAATCCT-AATATAAATCTCTTGAGCAT--ATGTTATGG
1 AAAGGATTTAGCCTGGACAGGTAATCCTGACTA-AGCTCTATTGAGTATAAATATTATAG
* * * * * *
26499877 AATGGATTTAGCCTGGACGGGTAATCCAGA-TCAAGCTCT-TTAGAGCAT--ATGTCATA-
1 AAAGGATTTAGCCTGGACAGGTAATCCTGACT-AAGCTCTATT-GAGTATAAATATTATAG
* *
26499933 AAAGGATTTAGCCTTGACTGGTAATCCTGACTAAGCTCTATTGAGTATAAATATTATAG
1 AAAGGATTTAGCCTGGACAGGTAATCCTGACTAAGCTCTATTGAGTATAAATATTATAG
* * * * * * * * * * *
26499992 ATAGGATTTAGCCCGAACAGGTAATCC-AAATCAAGATCT-TTAAAGCAT--ATGTCATAA
1 AAAGGATTTAGCCTGGACAGGTAATCCTGACT-AAGCTCTATT-GAGTATAAATATTATAG
* *
26500049 AAAGGATTTAGCTTGGACTA-ATAATCCTGACTAAGCTCTATTGAGTATAAATATTATAG
1 AAAGGATTTAGCCTGGAC-AGGTAATCCTGACTAAGCTCTATTGAGTATAAATATTATAG
*
26500108 ACAA-GATTTAGCCTGGACTGGTAATCCTG
1 A-AAGGATTTAGCCTGGACAGGTAATCCTG
26500137 TTGTATATAT
Statistics
Matches: 200, Mismatches: 43, Indels: 32
0.73 0.16 0.12
Matches are distributed among these distances:
56 40 0.20
57 81 0.41
58 17 0.09
59 60 0.30
60 2 0.01
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (59 bp):
AAAGGATTTAGCCTGGACAGGTAATCCTGACTAAGCTCTATTGAGTATAAATATTATAG
Found at i:26500032 original size:115 final size:116
Alignment explanation
Indices: 26499880--26500134 Score: 388
Period size: 116 Copynumber: 2.2 Consensus size: 116
26499870 GTTATGGAAT
* * * *
26499880 GGATTTAGCCTGGACGGGTAATCCAGATCAAGCTCTTTAGAGCATATGTCAT-AAAAGGATTTAG
1 GGATTTAGCCTGGACAGGTAATCCAAATCAAGATCTTTAAAGCATATGTCATAAAAAGGATTTAG
** *
26499944 CCTT-GACTGGTAATCCTGACTAAGCTCTATTGAGTATAAATATTATAGATA
66 -CTTGGACTAATAATCCTGACTAAGCTCTATTGAGTATAAATATTATAGACA
* *
26499995 GGATTTAGCCCGAACAGGTAATCCAAATCAAGATCTTTAAAGCATATGTCATAAAAAGGATTTAG
1 GGATTTAGCCTGGACAGGTAATCCAAATCAAGATCTTTAAAGCATATGTCATAAAAAGGATTTAG
26500060 CTTGGACTAATAATCCTGACTAAGCTCTATTGAGTATAAATATTATAGACA
66 CTTGGACTAATAATCCTGACTAAGCTCTATTGAGTATAAATATTATAGACA
* *
26500111 AGATTTAGCCTGGACTGGTAATCC
1 GGATTTAGCCTGGACAGGTAATCC
26500135 TGTTGTATAT
Statistics
Matches: 125, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
115 49 0.39
116 76 0.61
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (116 bp):
GGATTTAGCCTGGACAGGTAATCCAAATCAAGATCTTTAAAGCATATGTCATAAAAAGGATTTAG
CTTGGACTAATAATCCTGACTAAGCTCTATTGAGTATAAATATTATAGACA
Found at i:26503303 original size:24 final size:24
Alignment explanation
Indices: 26503275--26503326 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
26503265 TTTCTAGAAG
*
26503275 ATTTAGTATTTATTAGTATAATCT
1 ATTTAGCATTTATTAGTATAATCT
*
26503299 ATTTAGCATTTATTAGTATAATTT
1 ATTTAGCATTTATTAGTATAATCT
26503323 ATTT
1 ATTT
26503327 GACCTACGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.33, C:0.04, G:0.08, T:0.56
Consensus pattern (24 bp):
ATTTAGCATTTATTAGTATAATCT
Found at i:26513348 original size:14 final size:15
Alignment explanation
Indices: 26513329--26513357 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26513319 AACATGCATA
26513329 AAATGACC-AATTTC
1 AAATGACCAAATTTC
26513343 AAATGACCAAATTTC
1 AAATGACCAAATTTC
26513358 CATTCAATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.45, C:0.21, G:0.07, T:0.28
Consensus pattern (15 bp):
AAATGACCAAATTTC
Found at i:26514620 original size:20 final size:20
Alignment explanation
Indices: 26514595--26514673 Score: 81
Period size: 20 Copynumber: 4.0 Consensus size: 20
26514585 GATGCATAAC
26514595 AGGGGCACAAAAGTGCAAAT
1 AGGGGCACAAAAGTGCAAAT
26514615 AGGGGCACAAATA-TGCAAAT
1 AGGGGCACAAA-AGTGCAAAT
***
26514635 AGGGGCACCTTAGTGTC-AAT
1 AGGGGCACAAAAGTG-CAAAT
* *
26514655 AGGGACACCAAAGTGCAAA
1 AGGGGCACAAAAGTGCAAA
26514674 CAGAGGCACC
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
19 2 0.04
20 45 0.92
21 2 0.04
ACGTcount: A:0.41, C:0.18, G:0.28, T:0.14
Consensus pattern (20 bp):
AGGGGCACAAAAGTGCAAAT
Found at i:26517752 original size:18 final size:18
Alignment explanation
Indices: 26517729--26517768 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
26517719 GCTTAATTGA
26517729 TATAATTGTGGTAAATGC
1 TATAATTGTGGTAAATGC
26517747 TATAATTGTGGTAAATGC
1 TATAATTGTGGTAAATGC
26517765 TATA
1 TATA
26517769 TTATTGAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.35, C:0.05, G:0.20, T:0.40
Consensus pattern (18 bp):
TATAATTGTGGTAAATGC
Found at i:26517957 original size:42 final size:41
Alignment explanation
Indices: 26517901--26518015 Score: 108
Period size: 43 Copynumber: 2.7 Consensus size: 41
26517891 AGGGTTACCA
* *
26517901 AGATTAC-GGTAAGACCATATATGGGATATGACATCAATTTG
1 AGATTACATGTAAGACCATAT-TGGGATATGACATCAATATG
* * * *
26517942 AGACTT-CGTGTAAGACCATAGTTGGGCTATTGGCATCGATATG
1 AGA-TTACATGTAAGACCATA-TTGGGATA-TGACATCAATATG
*
26517985 AGATTACATGTAAGACTATATCTGGGATATG
1 AGATTACATGTAAGACCATAT-TGGGATATG
26518016 GCATTGGTAC
Statistics
Matches: 60, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
41 4 0.07
42 24 0.40
43 32 0.53
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.30
Consensus pattern (41 bp):
AGATTACATGTAAGACCATATTGGGATATGACATCAATATG
Found at i:26525277 original size:46 final size:46
Alignment explanation
Indices: 26525224--26525352 Score: 147
Period size: 47 Copynumber: 2.8 Consensus size: 46
26525214 GTTATCGTTG
* *
26525224 GCTAGTGTAAGACATGTTTGGGACATGCATCAGCCACATT-ATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCC-CATTGACGAGA
*
26525270 GCTAGTGTAAGACCATGTCTGGGACATAGCATCAG--TATTGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCCATT--GACGAGA
**
26525318 GCTAGTGTAAGATGTGTCTGGGACATGCATCAGCC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCC
26525353 TAAAGACATA
Statistics
Matches: 71, Mismatches: 5, Indels: 12
0.81 0.06 0.14
Matches are distributed among these distances:
45 3 0.04
46 19 0.27
47 25 0.35
48 24 0.34
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCCATTGACGAGA
Found at i:26528529 original size:42 final size:43
Alignment explanation
Indices: 26528469--26528550 Score: 121
Period size: 42 Copynumber: 1.9 Consensus size: 43
26528459 TTAAGTTTAC
*
26528469 GTGTAAGACCATATCTGGGAT-ATGGCATCGATATGAGATTTT
1 GTGTAAGACCATAGCTGGGATGATGGCATCGATATGAGATTTT
* * *
26528511 GTGTAAGACCATAGCTGGGCTGTTGGCATCGATTTGAGAT
1 GTGTAAGACCATAGCTGGGATGATGGCATCGATATGAGAT
26528551 CCCAAGTAAG
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
42 19 0.54
43 16 0.46
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGATGATGGCATCGATATGAGATTTT
Found at i:26539263 original size:39 final size:40
Alignment explanation
Indices: 26539155--26539379 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
26539145 TTGAATGATG
* * * *
26539155 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
26539195 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
26539235 TCCGGGCTAAG-CCTGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
26539274 TCCGGGTTAAGTACGGATGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26539314 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26539355 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26539380 AATGAGGAGC
Statistics
Matches: 158, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
39 33 0.21
40 115 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26539296 original size:79 final size:80
Alignment explanation
Indices: 26539155--26539359 Score: 229
Period size: 79 Copynumber: 2.6 Consensus size: 80
26539145 TTGAATGATG
* * * * * ** * *
26539155 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAG-ATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGC-GAGTTACTATAACCGGGTTAAGTA-CGGATGGCAT
*
26539218 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
26539235 TCCGGGCTAAG-CCTGAAGGCATTGGTGCGAGTTACTA-AATCCGGGTTAAGTACGGATGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAA-CCGGGTTAAGTACGGATGGCATT
*
26539298 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* *
26539314 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGG
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAACCGGG
26539360 CTATGTCCCG
Statistics
Matches: 105, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
78 1 0.01
79 55 0.52
80 47 0.45
81 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAACCGGGTTAAGTACGGATGGCATTT
GTGCGAGATACTAAA
Found at i:26539397 original size:80 final size:80
Alignment explanation
Indices: 26539155--26539412 Score: 197
Period size: 80 Copynumber: 3.2 Consensus size: 80
26539145 TTGAATGATG
* * * * * * *
26539155 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAG-ATCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGCTAAGTA-CCGAAGGCAT
** *
26539218 TTGTGCGAGAT-ACTAAT
64 TTGAACGAG-TGACTAAA
* * * * *
26539235 TCCGGGCTAAG-CCTGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTACGGATGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTACCGAAGGCATTT
** *
26539299 GTGCGAGTTACTAAA
66 GAACGAGTGACTAAA
* * *
26539314 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGCTAAGTACCGAAGGCATT
* *
26539378 TGAATGAG-GAGCTATA
65 TGAACGAGTGA-CTAAA
* *
26539394 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
26539413 TACGTGATGT
Statistics
Matches: 146, Mismatches: 26, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
78 1 0.01
79 71 0.49
80 72 0.49
81 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTACCGAAGGCATTT
GAACGAGTGACTAAA
Found at i:26545097 original size:13 final size:14
Alignment explanation
Indices: 26545070--26545101 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
26545060 ACTTACCTTG
26545070 TACTCGGAGTTGTT
1 TACTCGGAGTTGTT
26545084 TACTCGGA-TTGTT
1 TACTCGGAGTTGTT
26545097 TACTC
1 TACTC
26545102 AATAACCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.16, C:0.19, G:0.22, T:0.44
Consensus pattern (14 bp):
TACTCGGAGTTGTT
Found at i:26548083 original size:27 final size:27
Alignment explanation
Indices: 26548053--26548230 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
26548043 ATATTAAGTC
* *
26548053 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
26548080 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
26548108 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
** ** *
26548135 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
26548162 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
26548189 CGCACAGTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
26548216 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26548231 GTATAATTTA
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 103 0.80
28 26 0.20
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:26548137 original size:55 final size:54
Alignment explanation
Indices: 26548053--26548230 Score: 223
Period size: 54 Copynumber: 3.3 Consensus size: 54
26548043 ATATTAAGTC
* * *
26548053 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAA-T
* * * *
26548108 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
* ** * *
26548162 CGCACACTTAGTGC-ATCATATTCATTTCGCACAGTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
26548216 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26548231 GTATAATTTA
Statistics
Matches: 106, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 59 0.56
55 46 0.43
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:26548219 original size:81 final size:82
Alignment explanation
Indices: 26548074--26548229 Score: 226
Period size: 81 Copynumber: 1.9 Consensus size: 82
26548064 TGCTATATAA
* *
26548074 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
26548139 CACTTAGTGCCGCATGG
66 CACTTAGTGCCGCATGG
* * ** *
26548156 TCAATTCGCACACTTAGTG-CATCATATTC-ATTTCGCACAGTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGC
26548219 ACACTTAGTGC
65 ACACTTAGTGC
26548230 TGTATAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 42 0.64
82 24 0.36
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATGG
Found at i:26554449 original size:25 final size:25
Alignment explanation
Indices: 26554397--26554455 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
26554387 ATAAAACCTA
*
26554397 AAAATGAAATAGTATTAAATGAAAAT
1 AAAAT-AAAAAGTATTAAATGAAAAT
*
26554423 AAAATAAAAAGTACTTAAA-GAAGAT
1 AAAATAAAAAGTA-TTAAATGAAAAT
26554448 -AAATAAAA
1 AAAATAAAA
26554456 GTGAAAATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 8 0.27
25 12 0.40
26 10 0.33
ACGTcount: A:0.66, C:0.02, G:0.10, T:0.22
Consensus pattern (25 bp):
AAAATAAAAAGTATTAAATGAAAAT
Found at i:26558407 original size:29 final size:29
Alignment explanation
Indices: 26558364--26558452 Score: 99
Period size: 29 Copynumber: 3.1 Consensus size: 29
26558354 GAAAGCGTGT
* **
26558364 ATATGAATGTGATTTAGGCCTGATGGGCC
1 ATATGAATTTGATTTAGGCCCAATGGGCC
*
26558393 GTATGAATTTGATTTAGGCCCAATGGGCC
1 ATATGAATTTGATTTAGGCCCAATGGGCC
* * * *
26558422 ATATGAATTAGA-TTGGGCCTAGTGGGCC
1 ATATGAATTTGATTTAGGCCCAATGGGCC
26558450 ATA
1 ATA
26558453 CGCATGTATG
Statistics
Matches: 51, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
28 16 0.31
29 35 0.69
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (29 bp):
ATATGAATTTGATTTAGGCCCAATGGGCC
Found at i:26562945 original size:28 final size:29
Alignment explanation
Indices: 26562865--26562957 Score: 143
Period size: 29 Copynumber: 3.2 Consensus size: 29
26562855 TGCATGTATT
*
26562865 TGAATGTGATTTGGGCCTAATGGGCCGTA
1 TGAATGTGATTTGGGCCTAATGGGCCATA
*
26562894 TGAATGTGATTTGGGCCTAGTGGGCCATA
1 TGAATGTGATTTGGGCCTAATGGGCCATA
*
26562923 TGAATGAGA-TTGGGCCTAATGGGCCATA
1 TGAATGTGATTTGGGCCTAATGGGCCATA
*
26562951 TGCATGT
1 TGAATGT
26562958 ATGTAGACTT
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 23 0.40
29 35 0.60
ACGTcount: A:0.23, C:0.14, G:0.33, T:0.30
Consensus pattern (29 bp):
TGAATGTGATTTGGGCCTAATGGGCCATA
Found at i:26570238 original size:25 final size:25
Alignment explanation
Indices: 26570210--26570266 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
26570200 AGCTTCTCCA
* **
26570210 AGCTGAATA-ACGGTAAGCTCATGTG
1 AGCTGAATATAC-GTAACCTCAAATG
*
26570235 AGCTGAGTATACGTAACCTCAAATG
1 AGCTGAATATACGTAACCTCAAATG
26570260 AGCTGAA
1 AGCTGAA
26570267 ATCAGTAACC
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 24 0.92
26 2 0.08
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.23
Consensus pattern (25 bp):
AGCTGAATATACGTAACCTCAAATG
Found at i:26573036 original size:27 final size:27
Alignment explanation
Indices: 26573006--26573075 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
26572996 TTTACCAAAG
26573006 TTACCAAAATACCCCTAGTTTGTAAAA
1 TTACCAAAATACCCCTAGTTTGTAAAA
* *
26573033 TTACCAAAATACCCTTGGTTTGTAAAA
1 TTACCAAAATACCCCTAGTTTGTAAAA
*
26573060 TTACGAAAATACCCCT
1 TTACCAAAATACCCCT
26573076 GTAGGGTAGA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.30
Consensus pattern (27 bp):
TTACCAAAATACCCCTAGTTTGTAAAA
Found at i:26573415 original size:27 final size:27
Alignment explanation
Indices: 26573058--26573415 Score: 421
Period size: 27 Copynumber: 13.3 Consensus size: 27
26573048 TGGTTTGTAA
26573058 AATTA-CGAAAATACCCCTGTAGGGTAG
1 AATTACCG-AAATACCCCTGTAGGGTAG
* *
26573085 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
26573112 AATTACTAAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
26573139 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
26573166 AATTACTGAAATACTCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
26573193 AATTACTGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
26573220 AATTACTAAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
26573247 AATCACCGAAATACCCCTATAGGGTAT
1 AATTACCGAAATACCCCTGTAGGGTAG
26573274 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
26573301 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
26573328 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
26573355 AAATATCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** * *
26573382 AATTACCGAGATAATCTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
26573409 AATTACC
1 AATTACC
26573416 ATTTTGCCCC
Statistics
Matches: 281, Mismatches: 49, Indels: 2
0.85 0.15 0.01
Matches are distributed among these distances:
27 280 1.00
28 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:26573676 original size:24 final size:24
Alignment explanation
Indices: 26573619--26573691 Score: 69
Period size: 25 Copynumber: 3.0 Consensus size: 24
26573609 AGGAAGTGCG
**
26573619 AAAAG-GGCTTTGCCCCAGATTACC
1 AAAAGAGGCTTTGCCCCAG-TTATT
26573643 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATT
**
26573667 AAAAGAGGCTAGGCCTCCAGTTATT
1 AAAAGAGGCTTTGCC-CCAGTTATT
26573692 TGATAAAGCA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
24 18 0.44
25 23 0.56
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATT
Found at i:26575887 original size:27 final size:27
Alignment explanation
Indices: 26575857--26575923 Score: 98
Period size: 27 Copynumber: 2.5 Consensus size: 27
26575847 ACCAAAGTTG
26575857 CCAAAATACCCCTAGTTTGTAAAATTA
1 CCAAAATACCCCTAGTTTGTAAAATTA
* *
26575884 CCAAAATACCCTTGGTTTGTAAAATTA
1 CCAAAATACCCCTAGTTTGTAAAATTA
**
26575911 TGAAAATACCCCT
1 CCAAAATACCCCT
26575924 GTAGGGTAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
CCAAAATACCCCTAGTTTGTAAAATTA
Found at i:26575936 original size:27 final size:27
Alignment explanation
Indices: 26575906--26576253 Score: 340
Period size: 27 Copynumber: 13.2 Consensus size: 27
26575896 TGGTTTGTAA
26575906 AATTA-TGAAAATACCCCTGTAGGGTAG
1 AATTACTG-AAATACCCCTGTAGGGTAG
*
26575933 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
26575960 AATTACTAAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
26575987 AATTA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* * * *
26576014 AATTACTGAAGTACTCCTATAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
26576041 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
26576068 AATTACTGAAATACCTCTATAAGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
26576095 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
26576122 AATTAC-CAAA-A------TA-CGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
26576140 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
26576167 AATTACCGAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
26576194 AAATACTGGAATACCCCTATATGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * * *
26576221 AATTACCGAGATAACCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
26576248 AATTAC
1 AATTAC
26576254 CATTTTGCCC
Statistics
Matches: 259, Mismatches: 50, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
18 10 0.04
19 5 0.02
20 1 0.00
25 1 0.00
26 6 0.02
27 233 0.90
28 3 0.01
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:26575937 original size:54 final size:54
Alignment explanation
Indices: 26575879--26576135 Score: 275
Period size: 54 Copynumber: 4.8 Consensus size: 54
26575869 TAGTTTGTAA
* ** * *
26575879 AATTACCAAAATACCCTTGGT-TTGTAAAATTA-TGAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTT-GTAGGGTAAAATTACT-AAAATACCCCTATAAGGTAG
* *
26575933 AATTACTGAAATACCCTTGTAGGGTAGAATTACTAAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAAAATTACTAAAATACCCCTATAAGGTAG
* * * * * *
26575987 AATTATCGAAATACCCCTGTAGGGTAGAATTACTGAAGTACTCCTATAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAAAATTACTAAAATACCCCTATAAGGTAG
* * * * *
26576041 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCTCTATAAGATAG
1 AATTACCGAAATACCCTTGTAGGGTAAAATTACTAAAATACCCCTATAAGGTAG
** * * *
26576095 AATTATTGAAATACCCCTGTAGGGTAGAATTACCAAAATAC
1 AATTACCGAAATACCCTTGTAGGGTAAAATTACTAAAATAC
26576136 GTAGAATTAC
Statistics
Matches: 179, Mismatches: 22, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
53 2 0.01
54 176 0.98
55 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (54 bp):
AATTACCGAAATACCCTTGTAGGGTAAAATTACTAAAATACCCCTATAAGGTAG
Found at i:26576156 original size:45 final size:45
Alignment explanation
Indices: 26576092--26576180 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
26576082 CTCTATAAGA
*
26576092 TAGAATTATTGAAATACCCCTGTAGGGTAGAATTACCAAAATACG
1 TAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCAAAATACG
*
26576137 TAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATAC
1 TAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCAAAATAC
26576181 CCTTATAGGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.39, C:0.17, G:0.18, T:0.26
Consensus pattern (45 bp):
TAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCAAAATACG
Found at i:26576207 original size:72 final size:72
Alignment explanation
Indices: 26576064--26576199 Score: 191
Period size: 72 Copynumber: 1.9 Consensus size: 72
26576054 CCCCTGTAGG
* ** * *
26576064 GTAGAATTACTGAAATACCTCTATAAGATAGAATTATTGAAATACCCCTGTAGGGTAGAATTACC
1 GTAGAATTACTGAAATACCCCTATAAGATAGAATTACCGAAATACCCCTATAGGGTAGAAATACC
26576129 AAAATAC
66 AAAATAC
* * * *
26576136 GTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTATAGGGTAGAAATAC
1 GTAGAATTACTGAAATACCCCTATAAGATAGAATTACCGAAATACCCCTATAGGGTAGAAATAC
26576200 TGGAATACCC
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
72 55 1.00
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.26
Consensus pattern (72 bp):
GTAGAATTACTGAAATACCCCTATAAGATAGAATTACCGAAATACCCCTATAGGGTAGAAATACC
AAAATAC
Found at i:26576208 original size:99 final size:99
Alignment explanation
Indices: 26576037--26576227 Score: 285
Period size: 99 Copynumber: 1.9 Consensus size: 99
26576027 CTCCTATAAG
* * *
26576037 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCTCTATAAGATAGAATTATT
1 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCTCTATAAGATAGAAATACT
*
26576102 GAAATACCCCTGTAGGGTAGAATTACCAAAATAC
66 GAAATACCCCTATAGGGTAGAATTACCAAAATAC
* * *
26576136 GTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACC-CTTATAGGGTAGAAATAC
1 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCTC-TATAAGATAGAAATAC
* *
26576200 TGGAATACCCCTATATGGTAGAATTACC
65 TGAAATACCCCTATAGGGTAGAATTACC
26576228 GAGATAACCT
Statistics
Matches: 82, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
98 1 0.01
99 81 0.99
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (99 bp):
GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCTCTATAAGATAGAAATACT
GAAATACCCCTATAGGGTAGAATTACCAAAATAC
Found at i:26576246 original size:126 final size:126
Alignment explanation
Indices: 26576010--26576255 Score: 330
Period size: 126 Copynumber: 2.0 Consensus size: 126
26576000 CCCCTGTAGG
* * * *
26576010 GTAGAATTACTGAAGTACTCCTATAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT
1 GTAGAATTACTGAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTATAGGGTAGAAATACT
* ** * *
26576075 GAAATACCTCTATAAGATAGAATTATTGAAATACCCCTGTAGGGTAGAATTACCAAAATAC
66 GAAATACCCCTATAAGATAGAATTACCGAAATAACCCTGTAGGGTAAAATTACCAAAATAC
* * *
26576136 GTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTATAGGGTAGAAATACT
1 GTAGAATTACTGAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTATAGGGTAGAAATACT
* * * * * *
26576201 GGAATACCCCTATATGGTAGAATTACCGAGATAACCTTGTGGGGTAAAATTACCA
66 GAAATACCCCTATAAGATAGAATTACCGAAATAACCCTGTAGGGTAAAATTACCA
26576256 TTTTGCCCCT
Statistics
Matches: 102, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
126 102 1.00
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.26
Consensus pattern (126 bp):
GTAGAATTACTGAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTATAGGGTAGAAATACT
GAAATACCCCTATAAGATAGAATTACCGAAATAACCCTGTAGGGTAAAATTACCAAAATAC
Found at i:26576515 original size:24 final size:24
Alignment explanation
Indices: 26576458--26576530 Score: 69
Period size: 25 Copynumber: 3.0 Consensus size: 24
26576448 AGGAAGTGCG
**
26576458 AAAAG-GGCTTTGCCCCAGATTACC
1 AAAAGAGGCTTTGCCCCAG-TTATT
26576482 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATT
**
26576506 AAAAGAGGCTAGGCCTCCAGTTATT
1 AAAAGAGGCTTTGCC-CCAGTTATT
26576531 TGATAAAGCA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
24 18 0.44
25 23 0.56
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATT
Found at i:26582052 original size:8 final size:8
Alignment explanation
Indices: 26582039--26582065 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
26582029 ACCTTGCAAG
26582039 TTGCCAAC
1 TTGCCAAC
26582047 TTGCCAAC
1 TTGCCAAC
26582055 TTGCCAAC
1 TTGCCAAC
26582063 TTG
1 TTG
26582066 TTTTGAAACG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.22, C:0.33, G:0.15, T:0.30
Consensus pattern (8 bp):
TTGCCAAC
Found at i:26592362 original size:30 final size:30
Alignment explanation
Indices: 26592328--26592388 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
26592318 TTCCCGATCC
26592328 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
26592358 TAGGGGCAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
26592388 T
1 T
26592389 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:26597733 original size:86 final size:86
Alignment explanation
Indices: 26597586--26597768 Score: 303
Period size: 86 Copynumber: 2.1 Consensus size: 86
26597576 TATAGGAAAC
* * *
26597586 GCCGCTAAAAGTCATGACCTTTAGCGGCGCTTCTCCCACAAACACCGCTAAAGGCCATGACCTTT
1 GCCGCTAAAGGCCATGACATTTAGCGGCGCTTCTCCCACAAACACCGCTAAAGGCCATGACCTTT
26597651 AGCGGCGCTTCTCCCAAAAAT
66 AGCGGCGCTTCTCCCAAAAAT
* * *
26597672 GTCGCTAAAGGCCATGACATTTAGCGGTGCTTCTCCCACAAACATCGCTAAAGGCCATGACCTTT
1 GCCGCTAAAGGCCATGACATTTAGCGGCGCTTCTCCCACAAACACCGCTAAAGGCCATGACCTTT
26597737 AGCGGCGCTTCTCCCAAAAAT
66 AGCGGCGCTTCTCCCAAAAAT
*
26597758 GCCTCTAAAGG
1 GCCGCTAAAGG
26597769 TCATAAAATT
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
86 89 1.00
ACGTcount: A:0.27, C:0.32, G:0.20, T:0.22
Consensus pattern (86 bp):
GCCGCTAAAGGCCATGACATTTAGCGGCGCTTCTCCCACAAACACCGCTAAAGGCCATGACCTTT
AGCGGCGCTTCTCCCAAAAAT
Found at i:26597766 original size:43 final size:43
Alignment explanation
Indices: 26597586--26597768 Score: 253
Period size: 43 Copynumber: 4.3 Consensus size: 43
26597576 TATAGGAAAC
* * * *
26597586 GCCGCTAAAAGTCATGACCTTTAGCGGCGCTTCTCCCACAAAC
1 GCCGCTAAAGGCCATGACCTTTAGCGGCGCTTCTCCCAAAAAT
*
26597629 ACCGCTAAAGGCCATGACCTTTAGCGGCGCTTCTCCCAAAAAT
1 GCCGCTAAAGGCCATGACCTTTAGCGGCGCTTCTCCCAAAAAT
* * *
26597672 GTCGCTAAAGGCCATGACATTTAGCGGTGCTTCTCCCACAAACAT
1 GCCGCTAAAGGCCATGACCTTTAGCGGCGCTTCTCCCA-AAA-AT
26597717 --CGCTAAAGGCCATGACCTTTAGCGGCGCTTCTCCCAAAAAT
1 GCCGCTAAAGGCCATGACCTTTAGCGGCGCTTCTCCCAAAAAT
*
26597758 GCCTCTAAAGG
1 GCCGCTAAAGG
26597769 TCATAAAATT
Statistics
Matches: 124, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
41 2 0.02
42 3 0.02
43 114 0.92
44 3 0.02
45 2 0.02
ACGTcount: A:0.27, C:0.32, G:0.20, T:0.22
Consensus pattern (43 bp):
GCCGCTAAAGGCCATGACCTTTAGCGGCGCTTCTCCCAAAAAT
Found at i:26598959 original size:22 final size:22
Alignment explanation
Indices: 26598934--26598977 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
26598924 TATTTATTGT
*
26598934 TATTTAAAAAAATTATATATAA
1 TATTTAAAAAAATTAAATATAA
* *
26598956 TATTTATAAATATTAAATATAA
1 TATTTAAAAAAATTAAATATAA
26598978 AATATTAATC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
TATTTAAAAAAATTAAATATAA
Found at i:26599524 original size:29 final size:30
Alignment explanation
Indices: 26599482--26599543 Score: 108
Period size: 29 Copynumber: 2.1 Consensus size: 30
26599472 TTTTATACTG
26599482 GAATAACATTGACTACATTAAAAAATT-CT
1 GAATAACATTGACTACATTAAAAAATTGCT
*
26599511 GAATAACATTGACTACATTTAAAAATTGCT
1 GAATAACATTGACTACATTAAAAAATTGCT
26599541 GAA
1 GAA
26599544 ATCCAGAATC
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 26 0.84
30 5 0.16
ACGTcount: A:0.47, C:0.13, G:0.10, T:0.31
Consensus pattern (30 bp):
GAATAACATTGACTACATTAAAAAATTGCT
Found at i:26604551 original size:7 final size:7
Alignment explanation
Indices: 26604539--26604645 Score: 51
Period size: 7 Copynumber: 15.1 Consensus size: 7
26604529 ACTAATTAAT
26604539 CTAAACC
1 CTAAACC
26604546 CTAAACC
1 CTAAACC
*
26604553 TCTTAACCC
1 -C-TAAACC
*
26604562 CT-ATCC
1 CTAAACC
*
26604568 CATAAACA
1 C-TAAACC
26604576 CTAAACC
1 CTAAACC
26604583 CTAAACC
1 CTAAACC
*
26604590 CTTAA-C
1 CTAAACC
* *
26604596 TTTAACC
1 CTAAACC
*
26604603 CCAAACC
1 CTAAACC
*
26604610 CTTACACC
1 C-TAAACC
*
26604618 TTAAACTC
1 CTAAAC-C
26604626 C--AACC
1 CTAAACC
*
26604631 CTAACCC
1 CTAAACC
26604638 CTAAACC
1 CTAAACC
26604645 C
1 C
26604646 ATAATTCATC
Statistics
Matches: 74, Mismatches: 17, Indels: 18
0.68 0.16 0.17
Matches are distributed among these distances:
5 2 0.03
6 12 0.16
7 45 0.61
8 10 0.14
9 5 0.07
ACGTcount: A:0.36, C:0.43, G:0.00, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:26605041 original size:41 final size:41
Alignment explanation
Indices: 26604888--26605055 Score: 221
Period size: 41 Copynumber: 4.1 Consensus size: 41
26604878 GTTATATGAC
* *
26604888 TTTTAGCGGCGTTTTACCAAAAGCGCTGCTAATGCTCTGGT
1 TTTTAACGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
*
26604929 TTTTAACGGCGTTTTACTAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAACGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* *
26604970 TTTTAACGGCGTTTTACCAAAAGCGTCGCTAATGCTC-CGT
1 TTTTAACGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* ** * *
26605010 TTTTAGCGGCGTTTTAGTAAAAAACGCCGCTATTGCTCTGTGT
1 TTTTAACGGCGTTTTA-CCAAAAGCGCCGCTAATGCTCTG-GT
26605053 TTT
1 TTT
26605056 ACAATTTTTG
Statistics
Matches: 111, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
40 17 0.15
41 89 0.80
43 5 0.05
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (41 bp):
TTTTAACGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:26606046 original size:30 final size:31
Alignment explanation
Indices: 26606012--26606074 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
26606002 ACTTATTTTA
26606012 TTGTTAA-TTTTGTTATTATTTTA-AAGGCAT
1 TTGTTAATTTTTGTTATTATTTTAGAA-GCAT
*
26606042 TTGTTAATTTTTTTTATTATTTTAGAAGCAT
1 TTGTTAATTTTTGTTATTATTTTAGAAGCAT
26606073 TT
1 TT
26606075 TCTTGATAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 7 0.23
31 21 0.70
32 2 0.07
ACGTcount: A:0.25, C:0.03, G:0.11, T:0.60
Consensus pattern (31 bp):
TTGTTAATTTTTGTTATTATTTTAGAAGCAT
Found at i:26609796 original size:42 final size:42
Alignment explanation
Indices: 26609748--26609944 Score: 166
Period size: 42 Copynumber: 4.7 Consensus size: 42
26609738 TATGAGTTTA
* * *
26609748 CATGTAAGACCATATCTGGGATATGACATCGTTATGAGATTT
1 CATGTAAGACCATATCTGGGATATGGCATCGATATGAGATAT
* * * * ** *
26609790 CGTGTAAGACCATGTCTAGGACATGGCATTAATATGATA-AT
1 CATGTAAGACCATATCTGGGATATGGCATCGATATGAGATAT
* * * * *
26609831 CGTGTAAGACCAGAGCTGGGTTATTGGCATCAATATGAGA-AT
1 CATGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATAT
* * **
26609873 CATGTAAGACCATCGT-TGGGCTATTGGCATCGATATGAGATCC
1 CATGTAAGACCAT-ATCTGGGATA-TGGCATCGATATGAGATAT
*
26609916 CATGTAAGACCATATCTAGGATATGGCAT
1 CATGTAAGACCATATCTGGGATATGGCAT
26609945 TGGTATGATT
Statistics
Matches: 122, Mismatches: 29, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
41 18 0.15
42 86 0.70
43 18 0.15
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (42 bp):
CATGTAAGACCATATCTGGGATATGGCATCGATATGAGATAT
Found at i:26623167 original size:25 final size:24
Alignment explanation
Indices: 26623133--26623184 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 24
26623123 ACAGACGCAA
26623133 CTCTTTATGAACGTCCTGATATAGG
1 CTCTTTATGAACGTCCTGATAT-GG
* *
26623158 CTCTTTATGAGCTTCCTGATATGG
1 CTCTTTATGAACGTCCTGATATGG
26623182 CTC
1 CTC
26623185 GCTTGAACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.38
Consensus pattern (24 bp):
CTCTTTATGAACGTCCTGATATGG
Found at i:26629017 original size:21 final size:21
Alignment explanation
Indices: 26628991--26629031 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
26628981 TTTCCAATAC
26628991 CAAATCA-TAGTCGAATCATTT
1 CAAATCACTA-TCGAATCATTT
26629012 CAAATCACTATCGAATCATT
1 CAAATCACTATCGAATCATT
26629032 GTCGAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.39, C:0.22, G:0.07, T:0.32
Consensus pattern (21 bp):
CAAATCACTATCGAATCATTT
Found at i:26635869 original size:13 final size:13
Alignment explanation
Indices: 26635851--26635875 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26635841 AACGAAGCAA
26635851 GACACGGCCGTGC
1 GACACGGCCGTGC
26635864 GACACGGCCGTG
1 GACACGGCCGTG
26635876 TGCACCCACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.36, G:0.40, T:0.08
Consensus pattern (13 bp):
GACACGGCCGTGC
Found at i:26640902 original size:32 final size:32
Alignment explanation
Indices: 26640861--26640924 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
26640851 TCATAAATCT
26640861 ATAAAACCTGTCGCGAATAGTATCAATTTTTC
1 ATAAAACCTGTCGCGAATAGTATCAATTTTTC
26640893 ATAAAACCTGTCGCGAATAGTATCAATTTTTC
1 ATAAAACCTGTCGCGAATAGTATCAATTTTTC
26640925 TTTGGATAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.34
Consensus pattern (32 bp):
ATAAAACCTGTCGCGAATAGTATCAATTTTTC
Found at i:26642203 original size:35 final size:34
Alignment explanation
Indices: 26642154--26642223 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 34
26642144 TATGGTAATT
26642154 AGACCATTAAGAAAAGTTAGTAGATATTTTTTATG
1 AGACCATTAAGAAAAGTTAGTAGATA-TTTTTATG
*
26642189 AGACCATTAGGAAAAGTTAGTAGATATTTTTATG
1 AGACCATTAAGAAAAGTTAGTAGATATTTTTATG
26642223 A
1 A
26642224 TTCATCCATG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 9 0.26
35 25 0.74
ACGTcount: A:0.40, C:0.06, G:0.19, T:0.36
Consensus pattern (34 bp):
AGACCATTAAGAAAAGTTAGTAGATATTTTTATG
Found at i:26663422 original size:30 final size:31
Alignment explanation
Indices: 26663387--26663444 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
26663377 TTTATTAGCC
26663387 TAGGGGC-AAATATGTAATTTT-GACAAAGTT
1 TAGGGGCAAAAT-TGTAATTTTGGACAAAGTT
*
26663417 TAGGGGTAAAATTGTAATTTTGGACAAA
1 TAGGGGCAAAATTGTAATTTTGGACAAA
26663445 TATGATTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.38, C:0.05, G:0.24, T:0.33
Consensus pattern (31 bp):
TAGGGGCAAAATTGTAATTTTGGACAAAGTT
Found at i:26663783 original size:27 final size:27
Alignment explanation
Indices: 26663742--26663795 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
26663732 TGTCATGTGA
* *
26663742 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
26663769 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
26663796 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:26664131 original size:49 final size:50
Alignment explanation
Indices: 26664049--26664286 Score: 264
Period size: 49 Copynumber: 4.8 Consensus size: 50
26664039 TGAGACCACG
* * *
26664049 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTAGGTCACA
* * * * *
26664098 TGTGCAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TTAGGTCACA
* * ** *
26664149 TGTGTAGTACTAAGTGCAGGCTACTCTGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTAGGTCACA
* * * * * *
26664199 TGTATAGTACTAAGTGCAAGCTACTACGTGTATCGGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTAGGTCACA
* *
26664248 TGTGTAGTTCTAAGTGCAAGCTACTATGTGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
26664287 GCCTTGTCTA
Statistics
Matches: 157, Mismatches: 30, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
49 75 0.48
50 44 0.28
51 38 0.24
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTAGGTCACA
Found at i:26664278 original size:99 final size:100
Alignment explanation
Indices: 26664049--26664286 Score: 282
Period size: 99 Copynumber: 2.4 Consensus size: 100
26664039 TGAGACCACG
* * * *
26664049 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGCAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACATGTACAGTACTAAGTG
* *
26664114 CAGGCTACTATGCGTACCCGATAACTTCGATCACA
66 CAAGCTACTACGCGTACCCGATAACTTCGATCACA
* * ** * *
26664149 TGTGTAGTACTAAGTGCAGGCTACTCTGTGTATCAGATGGTTAGGTCACGTGTATAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT-GGTCACATGTACAGTACTAAGT
* * * * *
26664214 GCAAGCTACTACGTGTATCGGATAA-TT-GGTCGCA
65 GCAAGCTACTACGCGTACCCGATAACTTCGATCACA
* *
26664248 TGTGTAGTTCTAAGTGCAAGCTACTATGTGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
26664287 GCCTTGTCTA
Statistics
Matches: 115, Mismatches: 22, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
99 39 0.34
100 38 0.33
101 38 0.33
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (100 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACATGTACAGTACTAAGTG
CAAGCTACTACGCGTACCCGATAACTTCGATCACA
Found at i:26664316 original size:150 final size:150
Alignment explanation
Indices: 26664045--26664319 Score: 385
Period size: 150 Copynumber: 1.8 Consensus size: 150
26664035 ATTGTGAGAC
* *
26664045 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGCAGTACTA
1 CACGTGTATAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCGCATGTGCAGTACTA
* * * * *
26664110 AGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACATGTGTAGTACTAAGTGCAGGCTACTC
66 AGTGCAAGCTACTATGCGTACCAGATAACTTCGATCACAAGTGTAGAAATAAGTGCAGGCTACTC
26664175 TGTGTATCAGATGGTTAGGT
131 TGTGTATCAGATGGTTAGGT
* * *
26664195 CACGTGTATAGTACTAAGTGCAAGCTACTACGTGTATCGGATAATTGGTCGCATGTGTAGTTCTA
1 CACGTGTATAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCGCATGTGCAGTACTA
* * *
26664260 AGTGCAAGCTACTATGTGTACCAGATAGCCTT-G-TCTACAAGTGT-GAAAATATGTGCAGGC
66 AGTGCAAGCTACTATGCGTACCAGATA-ACTTCGATC-ACAAGTGTAG-AAATAAGTGCAGGC
26664320 AACTGAGTAT
Statistics
Matches: 109, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
149 3 0.03
150 103 0.94
151 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (150 bp):
CACGTGTATAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCGCATGTGCAGTACTA
AGTGCAAGCTACTATGCGTACCAGATAACTTCGATCACAAGTGTAGAAATAAGTGCAGGCTACTC
TGTGTATCAGATGGTTAGGT
Found at i:26667710 original size:16 final size:16
Alignment explanation
Indices: 26667691--26667722 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26667681 AATTATTTTG
26667691 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
26667707 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
26667723 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:26668029 original size:50 final size:50
Alignment explanation
Indices: 26667922--26668315 Score: 309
Period size: 50 Copynumber: 7.9 Consensus size: 50
26667912 ACCGAAGCTC
* * ** * **
26667922 TCTGGTACATGTAGTAGCCTGCAC--AGTACTACACATATGACCTATGAA
1 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAA
* ** *
26667970 TCT-AGTACACATAGTAGTATGCACTTAGTACTACACACGTGACTTAACCA
1 TCTGA-TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAA
* * *
26668020 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACATGA-TCGAAGTTAA
1 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACT-TAA--CAA
* * * * * * * * *
26668072 -CGGGTACGCATAGTAGCCTGTACTTAGTACTACACATGCGACCTATCAA
1 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAA
* * *
26668121 TCTGGTACACGTAGTAGCCTGCACTTAGTACTATACACGTGACTTAACCA
1 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAA
* * * *
26668171 TCTGATACGCGTAGTAGCCTACACTTAGTACTACACACGTGA-TCGAAGTTAA
1 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACT-TAA--CAA
* * *** * *
26668223 -C-GAGTACACATAGTAGCTTGCACTTAGTACTACACATACGACCTATCAA
1 TCTGA-TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAA
* *
26668272 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACT
1 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACT
26668316 CACAACGAAT
Statistics
Matches: 266, Mismatches: 64, Indels: 30
0.74 0.18 0.08
Matches are distributed among these distances:
48 18 0.07
49 6 0.02
50 172 0.65
51 68 0.26
52 2 0.01
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAA
Found at i:26668104 original size:101 final size:101
Alignment explanation
Indices: 26667974--26668158 Score: 271
Period size: 101 Copynumber: 1.8 Consensus size: 101
26667964 TATGAATCTA
* * * *
26667974 GTACACATAGTAGTATGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCC
1 GTACACATAGTAGCATGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGCC
26668039 TGCACTTAGTACTACACACATGATCGAAGTTAACGG
66 TGCACTTAGTACTACACACATGATCGAAGTTAACGG
* * * * * *
26668075 GTACGCATAGTAGCCTGTACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
1 GTACACATAGTAGCATGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGCC
*
26668140 TGCACTTAGTACTATACAC
66 TGCACTTAGTACTACACAC
26668159 GTGACTTAAC
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
101 73 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (101 bp):
GTACACATAGTAGCATGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGCC
TGCACTTAGTACTACACACATGATCGAAGTTAACGG
Found at i:26668123 original size:151 final size:151
Alignment explanation
Indices: 26667933--26668315 Score: 608
Period size: 151 Copynumber: 2.5 Consensus size: 151
26667923 CTGGTACATG
* * * * **
26667933 TAGTAGCCTGCAC--AGTACTACACATATGACCTATGAATCTAGTACACATAGTAGTATGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATACGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT
*
26667996 AGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACATG
66 AGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTACACACATG
* *
26668061 ATCGAAGTTAACGGGTACGCA
131 ATCGAAGTTAACGAGTACACA
* *
26668082 TAGTAGCCTGTACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATACGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT
* * *
26668147 AGTACTATACACGTGACTTAACCATCTGATACGCGTAGTAGCCTACACTTAGTACTACACACGTG
66 AGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTACACACATG
26668212 ATCGAAGTTAACGAGTACACA
131 ATCGAAGTTAACGAGTACACA
*
26668233 TAGTAGCTTGCACTTAGTACTACACATACGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATACGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT
*
26668298 AGTACTACACACATGACT
66 AGTACTACACACGTGACT
26668316 CACAACGAAT
Statistics
Matches: 213, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
149 12 0.06
151 201 0.94
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (151 bp):
TAGTAGCCTGCACTTAGTACTACACATACGACCTATCAATCTGGTACACGTAGTAGCCTGCACTT
AGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTACACACATG
ATCGAAGTTAACGAGTACACA
Done.