Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 85 of 362
Found at i:26668230 original size:101 final size:101
Alignment explanation
Indices: 26668125--26668309 Score: 262
Period size: 101 Copynumber: 1.8 Consensus size: 101
26668115 TATCAATCTG
* * ** * * *
26668125 GTACACGTAGTAGCCTGCACTTAGTACTATACACGTGACTTAACCATCTGATACGCGTAGTAGCC
1 GTACACATAGTAGCCTGCACTTAGTACTACACACACGACCTAACAATCTGATACACGTAGTAGCC
26668190 TACACTTAGTACTACACACGTGATCGAAGTTAACGA
66 TACACTTAGTACTACACACGTGATCGAAGTTAACGA
* * * *
26668226 GTACACATAGTAGCTTGCACTTAGTACTACACATACGACCTATCAATCTGGTACACGTAGTAGCC
1 GTACACATAGTAGCCTGCACTTAGTACTACACACACGACCTAACAATCTGATACACGTAGTAGCC
*
26668291 TGCACTTAGTACTACACAC
66 TACACTTAGTACTACACAC
26668310 ATGACTCACA
Statistics
Matches: 72, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
101 72 1.00
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (101 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACACACGACCTAACAATCTGATACACGTAGTAGCC
TACACTTAGTACTACACACGTGATCGAAGTTAACGA
Found at i:26672927 original size:28 final size:28
Alignment explanation
Indices: 26672887--26672942 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
26672877 TACTTAGCCA
26672887 GATTTAATACATTACTCACTCAAAACTT
1 GATTTAATACATTACTCACTCAAAACTT
26672915 GATTTAATACATTACTCACTCAAAACTT
1 GATTTAATACATTACTCACTCAAAACTT
26672943 ACTCTACGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.21, G:0.04, T:0.36
Consensus pattern (28 bp):
GATTTAATACATTACTCACTCAAAACTT
Found at i:26675889 original size:39 final size:39
Alignment explanation
Indices: 26675778--26675907 Score: 179
Period size: 40 Copynumber: 3.3 Consensus size: 39
26675768 GGACTAAGAT
* *
26675778 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTAAGTC
*
26675818 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTAAGTC
* * * *
26675858 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTC
26675897 CCGAAGGCATT
1 CCGAAGGCATT
26675908 TGAACGAGGA
Statistics
Matches: 81, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.46
40 44 0.54
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:26681224 original size:18 final size:17
Alignment explanation
Indices: 26681190--26681240 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 17
26681180 ATTAATTTAA
*
26681190 TTAAAAAATTATTAAATT
1 TTAAAAAATTA-AAAATT
26681208 TTAAAAAAGTTAAAAATT
1 TTAAAAAA-TTAAAAATT
* *
26681226 ATAATAAATTAAAAA
1 TTAAAAAATTAAAAA
26681241 CTTAATTCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
17 7 0.24
18 19 0.66
19 3 0.10
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (17 bp):
TTAAAAAATTAAAAATT
Found at i:26682028 original size:15 final size:15
Alignment explanation
Indices: 26682008--26682042 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
26681998 TTAAATTATG
26682008 AATTTATATATTTTT
1 AATTTATATATTTTT
26682023 AATTTATATATTTTT
1 AATTTATATATTTTT
26682038 AATTT
1 AATTT
26682043 TTTAAAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
AATTTATATATTTTT
Found at i:26685467 original size:16 final size:16
Alignment explanation
Indices: 26685434--26685467 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
26685424 ATATTATAAT
26685434 AATAATAATAAAATGA
1 AATAATAATAAAATGA
26685450 AATATATAATAAAA-GA
1 AATA-ATAATAAAATGA
26685466 AA
1 AA
26685468 AGAAAGTGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.24
Consensus pattern (16 bp):
AATAATAATAAAATGA
Found at i:26686261 original size:25 final size:25
Alignment explanation
Indices: 26686213--26686261 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
26686203 CTTAATTGAA
* *
26686213 ATGAAATAGATTGATTTTGTATATT
1 ATGAAATAGATTGATTATGAATATT
*
26686238 ATGAAATATATTGATTATGAATAT
1 ATGAAATAGATTGATTATGAATAT
26686262 ATGTGTATTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.45
Consensus pattern (25 bp):
ATGAAATAGATTGATTATGAATATT
Found at i:26687661 original size:24 final size:24
Alignment explanation
Indices: 26687634--26687693 Score: 93
Period size: 24 Copynumber: 2.5 Consensus size: 24
26687624 AGCTCTTATA
* * *
26687634 AGCTTACCGATTTTAGTTCTTGAG
1 AGCTTACTGATTTTAGCTCGTGAG
26687658 AGCTTACTGATTTTAGCTCGTGAG
1 AGCTTACTGATTTTAGCTCGTGAG
26687682 AGCTTACTGATT
1 AGCTTACTGATT
26687694 CTCAGCTCAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.40
Consensus pattern (24 bp):
AGCTTACTGATTTTAGCTCGTGAG
Found at i:26688782 original size:20 final size:18
Alignment explanation
Indices: 26688749--26688785 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
26688739 TGTGATGTTG
26688749 ATATGTTTAATTTAATTA
1 ATATGTTTAATTTAATTA
26688767 ATATGGTTTAAATTTAATT
1 ATAT-GTTT-AATTTAATT
26688786 CATGTTAGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 4 0.24
20 9 0.53
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (18 bp):
ATATGTTTAATTTAATTA
Found at i:26695322 original size:43 final size:44
Alignment explanation
Indices: 26695259--26695553 Score: 345
Period size: 43 Copynumber: 6.9 Consensus size: 44
26695249 CTTACAATGG
* * * * *
26695259 CAACGTCCCATA-TGTGGTCTTACATGTAACCTCATATCGATGC
1 CAACGTCCCAGACAGTGGTCTTACACGTAATCACATATCGATGC
* * * *
26695302 C-ACTGTCCTAGACAG-GGTCTTACTCATAAACACATATCGATGC
1 CAAC-GTCCCAGACAGTGGTCTTACACGTAATCACATATCGATGC
* *
26695345 CAACATCCTAGAC-GTGGTCTTACACGTAATCACATATCGATGC
1 CAACGTCCCAGACAGTGGTCTTACACGTAATCACATATCGATGC
*
26695388 CAACGTCCCAGACA-TGGTCTTACACATAATCACATATCGATGC
1 CAACGTCCCAGACAGTGGTCTTACACGTAATCACATATCGATGC
* *
26695431 CAACGTCCCAGA-TGTGGTCTTACACGTAATCACATATTGATGC
1 CAACGTCCCAGACAGTGGTCTTACACGTAATCACATATCGATGC
* *
26695474 CAACGTCCCAGA-TGTGGTCTTACACGTAATCACATATTGATGC
1 CAACGTCCCAGACAGTGGTCTTACACGTAATCACATATCGATGC
* ***
26695517 CAACATCCCAGAC-GTGGTCTTATGTGTAATCACATAT
1 CAACGTCCCAGACAGTGGTCTTACACGTAATCACATAT
26695554 ACATCCATGT
Statistics
Matches: 223, Mismatches: 22, Indels: 14
0.86 0.08 0.05
Matches are distributed among these distances:
42 3 0.01
43 217 0.97
44 3 0.01
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (44 bp):
CAACGTCCCAGACAGTGGTCTTACACGTAATCACATATCGATGC
Found at i:26695422 original size:86 final size:86
Alignment explanation
Indices: 26695272--26695553 Score: 386
Period size: 86 Copynumber: 3.3 Consensus size: 86
26695262 CGTCCCATAT
* * * * * * *
26695272 GTGGTCTTACATGTAACCTCATATCGATGCC-ACTGTCCTAGACAGGGTCTTACTCATAAACACA
1 GTGGTCTTACACGTAATCACATATCGATGCCAAC-GTCCCAGACATGGTCTTACACATAATCACA
*
26695336 TATCGATGCCAACATCCTAGAC
65 TATCGATGCCAACATCCCAGAC
26695358 GTGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACATGGTCTTACACATAATCACAT
1 GTGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACATGGTCTTACACATAATCACAT
* *
26695423 ATCGATGCCAACGTCCCAGAT
66 ATCGATGCCAACATCCCAGAC
* ** *
26695444 GTGGTCTTACACGTAATCACATATTGATGCCAACGTCCCAGATGTGGTCTTACACGTAATCACAT
1 GTGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACATGGTCTTACACATAATCACAT
*
26695509 ATTGATGCCAACATCCCAGAC
66 ATCGATGCCAACATCCCAGAC
***
26695530 GTGGTCTTATGTGTAATCACATAT
1 GTGGTCTTACACGTAATCACATAT
26695554 ACATCCATGT
Statistics
Matches: 175, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
86 173 0.99
87 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (86 bp):
GTGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACATGGTCTTACACATAATCACAT
ATCGATGCCAACATCCCAGAC
Found at i:26696866 original size:14 final size:15
Alignment explanation
Indices: 26696849--26696877 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26696839 ACACGAAAAT
26696849 TTCACACA-TATAAA
1 TTCACACATTATAAA
26696863 TTCACACATTATAAA
1 TTCACACATTATAAA
26696878 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (15 bp):
TTCACACATTATAAA
Found at i:26703101 original size:26 final size:28
Alignment explanation
Indices: 26703072--26703127 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 28
26703062 AATTTTAAAT
* *
26703072 TACATAGTTTATGA-ATAAT-AAAATAA
1 TACATAATTTATGATAAAATAAAAATAA
26703098 TACATAATTTATGATAAAATAAAAATAA
1 TACATAATTTATGATAAAATAAAAATAA
26703126 TA
1 TA
26703128 TATGGAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 13 0.50
27 4 0.15
28 9 0.35
ACGTcount: A:0.57, C:0.04, G:0.05, T:0.34
Consensus pattern (28 bp):
TACATAATTTATGATAAAATAAAAATAA
Found at i:26703156 original size:17 final size:18
Alignment explanation
Indices: 26703134--26703218 Score: 84
Period size: 17 Copynumber: 4.6 Consensus size: 18
26703124 AATATATGGA
*
26703134 ATAATATATAAA-AATGT
1 ATAATATATAAATAATAT
26703151 ATAATATATAATATAATAT
1 ATAATATATAA-ATAATAT
26703170 ATAATAGTATATAATAATAT
1 ATAATA-TATA-AATAATAT
* *
26703190 AAATAATATATAAAGAA-AA
1 --ATAATATATAAATAATAT
26703209 ATAATATATA
1 ATAATATATA
26703219 CTATTTTACA
Statistics
Matches: 59, Mismatches: 3, Indels: 12
0.80 0.04 0.16
Matches are distributed among these distances:
17 21 0.36
18 1 0.02
19 11 0.19
20 15 0.25
21 5 0.08
22 6 0.10
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (18 bp):
ATAATATATAAATAATAT
Found at i:26703156 original size:29 final size:28
Alignment explanation
Indices: 26703122--26703218 Score: 106
Period size: 29 Copynumber: 3.4 Consensus size: 28
26703112 TAAAATAAAA
* *
26703122 ATAATATATGGAATAATATATAAAAATGT
1 ATAATATAT-AAATAATATATAAAAATAT
* *
26703151 ATAATATATAATATAATATATAATAGTAT
1 ATAATATATAA-ATAATATATAAAAATAT
*
26703180 ATAATAATATAAATAATATATAAAGAA-AA
1 ATAAT-ATATAAATAATATATAAA-AATAT
26703209 ATAATATATA
1 ATAATATATA
26703219 CTATTTTACA
Statistics
Matches: 58, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
28 6 0.10
29 45 0.78
30 7 0.12
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (28 bp):
ATAATATATAAATAATATATAAAAATAT
Found at i:26703160 original size:7 final size:7
Alignment explanation
Indices: 26703150--26703202 Score: 51
Period size: 7 Copynumber: 7.7 Consensus size: 7
26703140 TATAAAAATG
26703150 TATAATA
1 TATAATA
26703157 TAT-A-A
1 TATAATA
26703162 TATAATA
1 TATAATA
26703169 TATAATA
1 TATAATA
26703176 GTAT-ATA
1 -TATAATA
26703183 -ATAATA
1 TATAATA
26703189 TAAATAATA
1 T--ATAATA
26703198 TATAA
1 TATAA
26703203 AGAAAAATAA
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
5 6 0.15
6 5 0.13
7 18 0.46
8 3 0.08
9 7 0.18
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (7 bp):
TATAATA
Found at i:26703165 original size:12 final size:12
Alignment explanation
Indices: 26703150--26703191 Score: 59
Period size: 12 Copynumber: 3.4 Consensus size: 12
26703140 TATAAAAATG
26703150 TATAATATATAA
1 TATAATATATAA
26703162 TATAATATATAA
1 TATAATATATAA
26703174 TAGT-ATATAATAA
1 TA-TAATAT-ATAA
26703187 TATAA
1 TATAA
26703192 ATAATATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
12 19 0.70
13 8 0.30
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (12 bp):
TATAATATATAA
Found at i:26703169 original size:41 final size:41
Alignment explanation
Indices: 26703122--26703202 Score: 103
Period size: 41 Copynumber: 2.0 Consensus size: 41
26703112 TAAAATAAAA
**
26703122 ATAATATATGGAATAATATATAA-AA-ATGTATAATATATAAT
1 ATAATATAT--AATAATATATAATAATATAAATAATATATAAT
*
26703163 ATAATATATAATAGTATATAATAATATAAATAATATATAA
1 ATAATATATAATAATATATAATAATATAAATAATATATAA
26703203 AGAAAAATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
39 11 0.31
40 2 0.06
41 22 0.63
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (41 bp):
ATAATATATAATAATATATAATAATATAAATAATATATAAT
Found at i:26703180 original size:22 final size:20
Alignment explanation
Indices: 26703133--26703203 Score: 78
Period size: 19 Copynumber: 3.6 Consensus size: 20
26703123 TAATATATGG
*
26703133 AATAATATATAAA-AATGT-
1 AATAATATATAAATAATATA
26703151 -ATAATATATAATATAATATA
1 AATAATATATAA-ATAATATA
*
26703171 TAATAGTATAT-AATAATATA
1 -AATAATATATAAATAATATA
26703191 AATAATATATAAA
1 AATAATATATAAA
26703204 GAAAAATAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
17 11 0.25
18 1 0.02
19 13 0.30
20 10 0.23
21 1 0.02
22 8 0.18
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (20 bp):
AATAATATATAAATAATATA
Found at i:26703195 original size:12 final size:11
Alignment explanation
Indices: 26703120--26703203 Score: 67
Period size: 10 Copynumber: 8.3 Consensus size: 11
26703110 GATAAAATAA
26703120 AAATAATATAT
1 AAATAATATAT
*
26703131 GGAATAATATAT
1 -AAATAATATAT
*
26703143 AAA-AATGTAT
1 AAATAATATAT
26703153 -AAT-ATATA-
1 AAATAATATAT
*
26703161 ATATAATATAT
1 AAATAATATAT
*
26703172 -AATAGTATAT
1 AAATAATATAT
26703182 -AAT-A-ATAT
1 AAATAATATAT
26703190 AAATAATATAT
1 AAATAATATAT
26703201 AAA
1 AAA
26703204 GAAAAATAAT
Statistics
Matches: 57, Mismatches: 8, Indels: 15
0.71 0.10 0.19
Matches are distributed among these distances:
8 4 0.07
9 11 0.19
10 23 0.40
11 9 0.16
12 10 0.18
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.36
Consensus pattern (11 bp):
AAATAATATAT
Found at i:26705413 original size:44 final size:44
Alignment explanation
Indices: 26704780--26705405 Score: 766
Period size: 44 Copynumber: 14.2 Consensus size: 44
26704770 CAAATGTCAG
* * *
26704780 ATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAAATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAA
* * *
26704824 ATCTGCTATCTTCTATCTGCTCTCTGACAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAA
* * *
26704868 ATCTGCTATCTGCGATCTGCTCTCTGACAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAA
* * * * *
26704912 ATTTGCTATCTTCGATCTGCTATCTAACAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAA
* * *
26704956 ATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGAAGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAA
* * * * *
26705000 ATCTATCATCTTCGATCTACTCTCTGTCAATATAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAA
* * * * * *
26705044 ATCTGTCATCTTCGATCTACTCTCAGTCAATACAGAGATGACAA
1 ATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAA
* * * * *
26705088 ATCTGTCATCTTCAATCTGCTCTCAGTCAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAA
* * *
26705132 ATCTGTCATCTTCAATCTGCTCTCTGTCAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAA
* * * **
26705176 ACCTGTTATCTTCGATCTACTCTCTAACAATACAGAGACGTTAA
1 ATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAA
* *
26705220 ACCTATTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAA
* * * *
26705264 ACCTGTTATCTTCGATTTTCTCTCTGACAATACAGAGACACCAA
1 ATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAA
* * *
26705308 ACCTGTTATCTTCGATTTGCTCTCTGACAATACAGAGACACCAA
1 ATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAA
* * *
26705352 ACCTATTATCTTTGATCTGCTCTCTGACAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAA
*
26705396 ATCTGCTATC
1 ATCTGTTATC
26705406 AGTGATCTAT
Statistics
Matches: 526, Mismatches: 56, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 526 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.31
Consensus pattern (44 bp):
ATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAA
Found at i:26706338 original size:53 final size:53
Alignment explanation
Indices: 26706236--26706340 Score: 122
Period size: 53 Copynumber: 2.0 Consensus size: 53
26706226 AAACCCCTTG
* * * *
26706236 GTCTCAAAGCGCCCTTTACGGGTTTTCAATTTGGCCTCACCATTTTTTTAGAA
1 GTCTCAAAGCACCCTTTACAGGTTTTCAATTTGGACTCACCATTCTTTTAGAA
* * * *
26706289 GTCTCAAAGCACCCTTTGCAGGTTTTCACTTTGGATTC-CCCTCTCTTTTAGA
1 GTCTCAAAGCACCCTTTACAGGTTTTCAATTTGGACTCACCAT-TCTTTTAGA
26706341 CAAAGTATTT
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
52 3 0.07
53 40 0.93
ACGTcount: A:0.19, C:0.27, G:0.16, T:0.38
Consensus pattern (53 bp):
GTCTCAAAGCACCCTTTACAGGTTTTCAATTTGGACTCACCATTCTTTTAGAA
Found at i:26717426 original size:17 final size:18
Alignment explanation
Indices: 26717404--26717488 Score: 93
Period size: 17 Copynumber: 4.6 Consensus size: 18
26717394 AATATATGGA
*
26717404 ATAATATATAAA-AATGT
1 ATAATATATAAATAATAT
26717421 ATAATATATAATATAATAT
1 ATAATATATAA-ATAATAT
26717440 ATAATAGTATATAATAATAT
1 ATAATA-TATA-AATAATAT
*
26717460 AAATAATATATAAATAA-AA
1 --ATAATATATAAATAATAT
26717479 ATAATATATA
1 ATAATATATA
26717489 CTATTTTACA
Statistics
Matches: 60, Mismatches: 2, Indels: 12
0.81 0.03 0.16
Matches are distributed among these distances:
17 21 0.35
18 1 0.02
19 11 0.18
20 16 0.27
21 5 0.08
22 6 0.10
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (18 bp):
ATAATATATAAATAATAT
Found at i:26717426 original size:29 final size:28
Alignment explanation
Indices: 26717392--26717488 Score: 106
Period size: 29 Copynumber: 3.4 Consensus size: 28
26717382 TAAAATAAAA
* *
26717392 ATAATATATGGAATAATATATAAAAATGT
1 ATAATATAT-AAATAATATATAAAAATAT
* *
26717421 ATAATATATAATATAATATATAATAGTAT
1 ATAATATATAA-ATAATATATAAAAATAT
*
26717450 ATAATAATATAAATAATATATAAATAA-AA
1 ATAAT-ATATAAATAATATATAAA-AATAT
26717479 ATAATATATA
1 ATAATATATA
26717489 CTATTTTACA
Statistics
Matches: 58, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
28 6 0.10
29 45 0.78
30 7 0.12
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (28 bp):
ATAATATATAAATAATATATAAAAATAT
Found at i:26717435 original size:12 final size:12
Alignment explanation
Indices: 26717420--26717488 Score: 67
Period size: 12 Copynumber: 5.9 Consensus size: 12
26717410 TATAAAAATG
26717420 TATAATATATAA
1 TATAATATATAA
26717432 TATAATATATAA
1 TATAATATATAA
26717444 TAGT-ATATAATAA
1 TA-TAATAT-ATAA
26717457 TATAA-ATA-ATA
1 TATAATATATA-A
26717468 TATAA-ATA-AA
1 TATAATATATAA
*
26717478 AATAATATATA
1 TATAATATATA
26717489 CTATTTTACA
Statistics
Matches: 50, Mismatches: 1, Indels: 12
0.79 0.02 0.19
Matches are distributed among these distances:
10 6 0.12
11 14 0.28
12 22 0.44
13 8 0.16
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (12 bp):
TATAATATATAA
Found at i:26729967 original size:47 final size:47
Alignment explanation
Indices: 26729898--26730070 Score: 185
Period size: 47 Copynumber: 3.7 Consensus size: 47
26729888 ATCCATAAGT
* *
26729898 GAACTCGGACTCAACTTAACGAGTTCGGATGCCTATTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTATTTACATCTCAA
* **
26729945 GAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTCGCATC-CATAA
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTATTTACATCTC--AA
** * *
26729989 GTGAACTCGGGTTCAACTCAATGAGTTCGGATGCCTAGTTACATCTCAA
1 --GAACTCGGACTCAACTCAACGAGTTCGGATGCCTATTTACATCTCAA
*
26730038 AAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC
26730071 CAAATATCCT
Statistics
Matches: 101, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 1 0.01
43 7 0.07
44 2 0.02
46 25 0.25
47 56 0.55
49 3 0.03
50 6 0.06
51 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.24
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTATTTACATCTCAA
Found at i:26729971 original size:93 final size:93
Alignment explanation
Indices: 26729851--26730066 Score: 324
Period size: 93 Copynumber: 2.3 Consensus size: 93
26729841 CGCCCATAAG
* * * * *
26729851 CGAACTCGGACTCAACTCAATGGGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTTA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
26729916 ACGAGTTCGGATGCCTATTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
**
26729944 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGGTTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
26730009 ATGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
** *
26730037 AAAACTCGGACTCAACTCAACGAGTTCGGA
1 CGAACTCGGACTCAACTCAACGAGCTCGGA
26730067 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 111 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:26730019 original size:46 final size:46
Alignment explanation
Indices: 26729844--26730019 Score: 160
Period size: 46 Copynumber: 3.8 Consensus size: 46
26729834 TGTAACCCGC
* * * *
26729844 CCATAAGCGAACTCGGACTCAACTCAATGGGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * * **
26729890 CCATAAGTGAACTCGGACTCAACTTAACGAGTTCGGATGCCTATTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTCGCAT
*
26729940 -C-TCA-CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* ** * *
26729983 CCATAAGTGAACTCGGGTTCAACTCAATGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
26730020 TGCCTAGTTA
Statistics
Matches: 102, Mismatches: 21, Indels: 14
0.74 0.15 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 56 0.55
47 27 0.26
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:26736359 original size:47 final size:47
Alignment explanation
Indices: 26736299--26736465 Score: 164
Period size: 47 Copynumber: 3.6 Consensus size: 47
26736289 CATCCATAAG
* *
26736299 TGAACTTGAACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
* * * * *
26736346 CGAACTCGGACTCAACTCAACGAGTT--TA-GAC-A-TTCGCATCCATAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA
*
26736391 GTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
1 -TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
* * *
26736439 TGAACTCGGATTCAACTGAATGAGTTC
1 TGAACTCGGACTCAACTCAACGAGTTC
26736466 AAATGCCCAA
Statistics
Matches: 94, Mismatches: 17, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 3 0.03
46 24 0.26
47 46 0.49
48 3 0.03
49 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (47 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:26736363 original size:93 final size:93
Alignment explanation
Indices: 26736253--26736462 Score: 312
Period size: 93 Copynumber: 2.3 Consensus size: 93
26736243 CGCCCATAAG
* * * * *
26736253 CGAACTCGAACACAACTCAATGAGATCGGGCATTTGCATCCATAAGTGAACTTGAACTCAACTCA
1 CGAACTCGGACTCAACTCAATGAGATCAGACATTCGCATCCATAAGTGAACTTGAACTCAACTCA
26736318 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * * *
26736346 CGAACTCGGACTCAACTCAACGAGTTTAGACATTCGCATCCATAAGTGAACTTGGACTCAACTCA
1 CGAACTCGGACTCAACTCAATGAGATCAGACATTCGCATCCATAAGTGAACTTGAACTCAACTCA
26736411 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
26736439 TGAACTCGGATTCAACTGAATGAG
1 CGAACTCGGACTCAACTCAATGAG
26736463 TTCAAATGCC
Statistics
Matches: 104, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 104 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAATGAGATCAGACATTCGCATCCATAAGTGAACTTGAACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:26742253 original size:43 final size:43
Alignment explanation
Indices: 26742205--26742292 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
26742195 CCAAACACTA
26742205 GACTCAGTACTATTCAAAATATTCTTTGAAAATAAGTTCAGGG
1 GACTCAGTACTATTCAAAATATTCTTTGAAAATAAGTTCAGGG
26742248 GACTCAGTACTATTCAAAATATTCTTTGAAAATAAGTTCAGGG
1 GACTCAGTACTATTCAAAATATTCTTTGAAAATAAGTTCAGGG
26742291 GA
1 GA
26742293 GTTAAAAAGA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.32
Consensus pattern (43 bp):
GACTCAGTACTATTCAAAATATTCTTTGAAAATAAGTTCAGGG
Found at i:26742370 original size:11 final size:10
Alignment explanation
Indices: 26742351--26742395 Score: 54
Period size: 11 Copynumber: 4.2 Consensus size: 10
26742341 AAATGCTCGT
26742351 GAAAAAAAAA
1 GAAAAAAAAA
26742361 GAAGAAAAAAA
1 GAA-AAAAAAA
*
26742372 TAAAATAAAAA
1 GAAAA-AAAAA
26742383 GAACAAAAAAA
1 GAA-AAAAAAA
26742394 GA
1 GA
26742396 GAGCATATGT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
10 5 0.17
11 23 0.77
12 2 0.07
ACGTcount: A:0.82, C:0.02, G:0.11, T:0.04
Consensus pattern (10 bp):
GAAAAAAAAA
Found at i:26742384 original size:22 final size:21
Alignment explanation
Indices: 26742352--26742393 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
26742342 AATGCTCGTG
*
26742352 AAAAAAAAAGAAGAAAAAAAT
1 AAAAAAAAAGAACAAAAAAAT
26742373 AAAATAAAAAGAACAAAAAAA
1 AAAA-AAAAAGAACAAAAAAA
26742394 GAGAGCATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.86, C:0.02, G:0.07, T:0.05
Consensus pattern (21 bp):
AAAAAAAAAGAACAAAAAAAT
Found at i:26746761 original size:43 final size:43
Alignment explanation
Indices: 26746700--26746785 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
26746690 TATGTGATTG
26746700 ATATTGAAATGACAAAGATGAGAAATGAATATGAGATGAGAAA
1 ATATTGAAATGACAAAGATGAGAAATGAATATGAGATGAGAAA
* *
26746743 ATATTGAAATGACAAAGATGATAAATGAATATGAGATGTGAAA
1 ATATTGAAATGACAAAGATGAGAAATGAATATGAGATGAGAAA
26746786 CTTGAATGAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.52, C:0.02, G:0.22, T:0.23
Consensus pattern (43 bp):
ATATTGAAATGACAAAGATGAGAAATGAATATGAGATGAGAAA
Found at i:26751237 original size:49 final size:49
Alignment explanation
Indices: 26751181--26751277 Score: 158
Period size: 49 Copynumber: 2.0 Consensus size: 49
26751171 TCTAGGAGGG
* *
26751181 ATAAATAGTGATAAGAGTGCAAACAGTGGAAGACTAAATTTAGCAATGT
1 ATAAATAGTGATAAGAGTGCAAACAGTGGAAGACCAAATTTAGAAATGT
* *
26751230 ATAAATAGTGATAAGAGTGTATACAGTGGAAGACCAAATTTAGAAATG
1 ATAAATAGTGATAAGAGTGCAAACAGTGGAAGACCAAATTTAGAAATG
26751278 CATAGCATAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.45, C:0.07, G:0.23, T:0.25
Consensus pattern (49 bp):
ATAAATAGTGATAAGAGTGCAAACAGTGGAAGACCAAATTTAGAAATGT
Found at i:26762245 original size:30 final size:30
Alignment explanation
Indices: 26762211--26762268 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
26762201 CCGAGCCTAG
*
26762211 GGGCAAAAGTGTAAATATGCAAAAGTTTAT
1 GGGCAAAAGTGTAAATATGAAAAAGTTTAT
* * *
26762241 GGGCAAAATTGTAATTTTGAAAAAGTTT
1 GGGCAAAAGTGTAAATATGAAAAAGTTT
26762269 GAGTTAAGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.41, C:0.05, G:0.22, T:0.31
Consensus pattern (30 bp):
GGGCAAAAGTGTAAATATGAAAAAGTTTAT
Found at i:26763051 original size:68 final size:66
Alignment explanation
Indices: 26762979--26763154 Score: 178
Period size: 67 Copynumber: 2.6 Consensus size: 66
26762969 CATCATGTGT
* *
26762979 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTG-T-ACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGGGTGATACCAGGTGATGACACCA
26763042 TGTAG
62 TGTAG
** * * *
26763047 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGTGTGGTTCCAGGTGAATGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGGGTGATACCAGGTG-ATGACACCATGT
26763112 AG
65 AG
* * * * *
26763114 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATAGGTG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGGGTG
26763155 GTACTGAGTG
Statistics
Matches: 92, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
64 27 0.29
65 3 0.03
66 18 0.20
67 31 0.34
68 13 0.14
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.23
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGGGTGATACCAGGTGATGACACCATGTA
G
Found at i:26763084 original size:64 final size:63
Alignment explanation
Indices: 26763003--26763187 Score: 194
Period size: 67 Copynumber: 2.9 Consensus size: 63
26762993 AGACATTATG
* * *
26763003 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA-GTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * *
26763067 ATGTAGCTAGGTCGCATGTGTGGTTCCAGGTGAATGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA-GTG--T-ACACCATGTAGACAAGAGAGCTACGAGAT
26763132 AA
62 AA
* * * * *
26763134 AT-TGGCTAGGTCACATAGGTGGTACTGAGTGTTCACCATGT-GTACAAGAAAGCT
1 ATGTAGCTAGGTCGCATGGGTGGTACT-AGTGTACACCATGTAG-ACAAGAGAGCT
26763188 GAACTATATG
Statistics
Matches: 101, Mismatches: 15, Indels: 11
0.80 0.12 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 28 0.28
66 22 0.22
67 32 0.32
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:26799124 original size:39 final size:39
Alignment explanation
Indices: 26799081--26799194 Score: 192
Period size: 39 Copynumber: 2.9 Consensus size: 39
26799071 TCGAACATAT
* * *
26799081 TTCCAGCACGTAGCCTACGGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
26799120 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
*
26799159 TTCCAGCACATAGCTTGCGGACCCTAAGTCCGGATA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATA
26799195 CACATCAAAT
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 71 1.00
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
Found at i:26802322 original size:21 final size:20
Alignment explanation
Indices: 26802298--26802340 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
26802288 CAGCCTCTAG
* *
26802298 CACAGGCGTGTCCTAGGGTCA
1 CACAAGCGTGT-CTAGAGTCA
*
26802319 CACAAGTGTGTCTAGAGTCA
1 CACAAGCGTGTCTAGAGTCA
26802339 CA
1 CA
26802341 GGGCATGTCC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.26, C:0.26, G:0.28, T:0.21
Consensus pattern (20 bp):
CACAAGCGTGTCTAGAGTCA
Found at i:26809088 original size:51 final size:51
Alignment explanation
Indices: 26809007--26809148 Score: 160
Period size: 50 Copynumber: 2.8 Consensus size: 51
26808997 AAGGTCGCAT
* * * *
26809007 GTGTAGTACTATGTGCAGGCTACTATGTGTACCCGATAATTTCGATCACGC
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTTAGATCACGC
* ** * * *
26809058 GTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GGTTAGGTCATGT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTTAGATCACGC
* **
26809108 GTGTAGTACTAAGTGCAAGCTACTACGTGTACTGGATAATT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
26809149 GGTCGCATGT
Statistics
Matches: 74, Mismatches: 16, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
50 40 0.54
51 34 0.46
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (51 bp):
GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTTAGATCACGC
Found at i:26812221 original size:15 final size:16
Alignment explanation
Indices: 26812198--26812245 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 16
26812188 TAGTATCGTA
26812198 TCTTGGGTTTCTTTAT
1 TCTTGGGTTTCTTTAT
26812214 TC-TGGGTTT-TTCTA-
1 TCTTGGGTTTCTT-TAT
*
26812228 TCTTGGATTTCTTTAT
1 TCTTGGGTTTCTTTAT
26812244 TC
1 TC
26812246 GATTTTCTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
14 4 0.15
15 17 0.63
16 6 0.22
ACGTcount: A:0.08, C:0.15, G:0.17, T:0.60
Consensus pattern (16 bp):
TCTTGGGTTTCTTTAT
Found at i:26814537 original size:99 final size:101
Alignment explanation
Indices: 26814350--26814537 Score: 245
Period size: 99 Copynumber: 1.9 Consensus size: 101
26814340 TGAGGTCGCA
* * * *
26814350 TGTGTAGTACTATGTGTAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAACTTCGATCACATGTGTAGTACTAAG
* * *
26814415 TGCAGTCTACTACGTGTATCAGATGGTTAGGTCATG
66 TGCAGGCTACTACGCGTACCAGATGGTTAGGTCATG
* * * * *
26814451 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT-GGTCGCATGTGTAGTACTATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAACTTCGATCACATGTGTAGTACTAAG
*
26814514 TGCAGGCTACTATGCGTACCAGAT
66 TGCAGGCTACTACGCGTACCAGAT
26814538 AGCTTTGGCT
Statistics
Matches: 74, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
99 37 0.50
100 2 0.03
101 35 0.47
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (101 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAACTTCGATCACATGTGTAGTACTAAG
TGCAGGCTACTACGCGTACCAGATGGTTAGGTCATG
Found at i:26826472 original size:13 final size:12
Alignment explanation
Indices: 26826454--26826503 Score: 55
Period size: 13 Copynumber: 3.9 Consensus size: 12
26826444 AAACCAAATT
26826454 TTTCAAAAGCAC
1 TTTCAAAAGCAC
26826466 TTCTCAAAAGCATC
1 TT-TCAAAAGCA-C
* *
26826480 TTTCCACAGCAC
1 TTTCAAAAGCAC
26826492 TTTTCAAAAGCA
1 -TTTCAAAAGCA
26826504 TTGCCAAACT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
12 3 0.10
13 25 0.81
14 3 0.10
ACGTcount: A:0.36, C:0.28, G:0.08, T:0.28
Consensus pattern (12 bp):
TTTCAAAAGCAC
Found at i:26829751 original size:50 final size:49
Alignment explanation
Indices: 26829632--26829818 Score: 207
Period size: 50 Copynumber: 3.8 Consensus size: 49
26829622 TGAGGTCGCA
* * * *
26829632 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT-GATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGACTGTAGGTCACG
* **
26829683 TGCGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT-AGGTCACG
* * *
26829733 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
* *
26829782 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
26829819 TAGCTTCGGC
Statistics
Matches: 117, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
47 1 0.01
48 4 0.03
49 40 0.34
50 42 0.36
51 30 0.26
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.27
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
Found at i:26831291 original size:13 final size:13
Alignment explanation
Indices: 26831273--26831305 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
26831263 TGAGCCCCTT
26831273 CACACGGGCGTGG
1 CACACGGGCGTGG
26831286 CACACGGGCGTGG
1 CACACGGGCGTGG
26831299 CACACGG
1 CACACGG
26831306 CCATTCCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.18, C:0.33, G:0.42, T:0.06
Consensus pattern (13 bp):
CACACGGGCGTGG
Found at i:26836651 original size:72 final size:72
Alignment explanation
Indices: 26836566--26836705 Score: 253
Period size: 72 Copynumber: 1.9 Consensus size: 72
26836556 AGGAGGATCC
*
26836566 AATAATCTTGGGACAACCATTTTTAGGCACTGGACGAACGCTTATTGATGTTTACAAAGGTGAAC
1 AATAATCTTGGGACAACCATTTTTAGGCACCGGACGAACGCTTATTGATGTTTACAAAGGTGAAC
26836631 TAATTCT
66 TAATTCT
* *
26836638 AATAATCTTGGGACGACCATTTTTAGGCACCGGACGAACTCTTATTGATGTTTACAAAGGTGAAC
1 AATAATCTTGGGACAACCATTTTTAGGCACCGGACGAACGCTTATTGATGTTTACAAAGGTGAAC
26836703 TAA
66 TAA
26836706 CCATGTGACT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 65 1.00
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (72 bp):
AATAATCTTGGGACAACCATTTTTAGGCACCGGACGAACGCTTATTGATGTTTACAAAGGTGAAC
TAATTCT
Found at i:26848849 original size:19 final size:19
Alignment explanation
Indices: 26848825--26848873 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
26848815 AGGCTAGGGG
*
26848825 CACGGGTGTGTCCCACGCA
1 CACGGGTGTGTCCCACACA
26848844 CACGGGCT-TGTCCCACACA
1 CACGGG-TGTGTCCCACACA
*
26848863 CACGGGCGTGT
1 CACGGGTGTGT
26848874 GGTGTACCTC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 25 0.96
20 1 0.04
ACGTcount: A:0.16, C:0.37, G:0.31, T:0.16
Consensus pattern (19 bp):
CACGGGTGTGTCCCACACA
Found at i:26861049 original size:45 final size:46
Alignment explanation
Indices: 26860997--26861086 Score: 121
Period size: 46 Copynumber: 2.0 Consensus size: 46
26860987 ATCCCTCCTC
*
26860997 CTCTCTCTCAAATGATT-TCTCCTTAACCAATTGCTTCTT-CTTCTT
1 CTCTCTCTCAAATGATTATATCCTTAACCAATTGCTT-TTACTTCTT
* * *
26861042 CTCTCTCTCGAATGGTTATATCCTTAACCGATTGCTTTTACTTCT
1 CTCTCTCTCAAATGATTATATCCTTAACCAATTGCTTTTACTTCT
26861087 ATTGCCCTCA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
45 17 0.44
46 22 0.56
ACGTcount: A:0.18, C:0.29, G:0.08, T:0.46
Consensus pattern (46 bp):
CTCTCTCTCAAATGATTATATCCTTAACCAATTGCTTTTACTTCTT
Found at i:26867217 original size:68 final size:67
Alignment explanation
Indices: 26867015--26867210 Score: 208
Period size: 67 Copynumber: 3.0 Consensus size: 67
26867005 TCGATTGTAC
* * * *
26867015 ACATGGTGAACACTTAGTACCACCCATGTGACCTAGCCAG-T--T-TATCTCGTAGCTCTCTTGT
1 ACATGGTGTACACATAGTACCACCCATGCGACCTAGCTAGATCATATATCTCGTAGCTCTCTTGT
26867076 CT
66 CT
* * * * * *
26867078 AGATGGTGTCCTTCACCTGGAACCACGCATGCGACCTAGCT--A-CATATATCTCGTAGCTCTCT
1 ACATGGTG---TACACATAGTACCACCCATGCGACCTAGCTAGATCATATATCTCGTAGCTCTCT
26867140 TGTCT
63 TGTCT
*
26867145 ACATGGTGTACACATAGTACCACCCATGCGACCTAGCTAGATCATAATGTCTCGTAGCTCTCTTG
1 ACATGGTGTACACATAGTACCACCCATGCGACCTAGCTAGATCAT-ATATCTCGTAGCTCTCTTG
26867210 T
65 T
26867211 ACACATGATG
Statistics
Matches: 106, Mismatches: 16, Indels: 17
0.76 0.12 0.12
Matches are distributed among these distances:
63 7 0.07
64 25 0.24
66 24 0.23
67 31 0.29
68 19 0.18
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.30
Consensus pattern (67 bp):
ACATGGTGTACACATAGTACCACCCATGCGACCTAGCTAGATCATATATCTCGTAGCTCTCTTGT
CT
Found at i:26877911 original size:49 final size:50
Alignment explanation
Indices: 26877831--26878076 Score: 289
Period size: 49 Copynumber: 4.9 Consensus size: 50
26877821 ATCTATTGTG
* * *
26877831 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATT
* *
26877881 -GGTCCCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA-TT
* * ** * * * * **
26877931 CGATCATGTGTGTAGTACTAAGTGGAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATT
** *
26877981 AGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATT
* *
26878031 -GGTCGCATGTGTAGTACTAAGTCCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
26878077 GCTTTGGCTA
Statistics
Matches: 167, Mismatches: 27, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
49 84 0.50
50 47 0.28
51 36 0.22
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATT
Found at i:26878020 original size:101 final size:98
Alignment explanation
Indices: 26877834--26878076 Score: 297
Period size: 100 Copynumber: 2.4 Consensus size: 98
26877824 TATTGTGAGG
* * *
26877834 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCCCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
* *
26877899 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTACGCGTACCAGATAA-TT-GA
* * * ** **
26877934 TCATGTGTGTAGTACTAAGTGGAGGCTACTACGTGTATCAGATGGTTAGGTCATGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTAC
*
26877999 TAAGTGCAGGCTACTACGCGTACCAGATAATTGG
65 TAAGTGCAGGCTACTACGCGTACCAGATAATTGA
* * * * *
26878033 TCGCATGTGTAGTACTAAGTCCAGGCTACTATGCGTACCAGATA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
26878077 GCTTTGGCTA
Statistics
Matches: 120, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
99 36 0.30
100 42 0.35
101 42 0.35
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCAGATAATTGA
Found at i:26882704 original size:101 final size:99
Alignment explanation
Indices: 26882586--26882769 Score: 262
Period size: 101 Copynumber: 1.8 Consensus size: 99
26882576 ATGTATAGTG
* *
26882586 AGGTCATGTGTGTAGTACTAAGTGCAGGCTACTATGC-ATACCCGATAATTTCGATCACGTGTGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTAT-CTATACCCGATAA-TT-GATCACATGTGT
26882650 AGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTT
63 AGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTT
* ** * *
26882687 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATCTGTACTGGATAATTGGTCGCATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATCTATACCCGATAATTGATCACATGTGTAGT
*
26882752 ACTAAGTGCAGGCTACTA
66 ACTAAGTGCAAGCTACTA
26882770 TGCGTACCAA
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
99 29 0.39
100 3 0.04
101 42 0.57
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (99 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATCTATACCCGATAATTGATCACATGTGTAGT
ACTAAGTGCAAGCTACTACGTGTATCAGATGGTT
Found at i:26882718 original size:50 final size:49
Alignment explanation
Indices: 26882586--26882769 Score: 192
Period size: 50 Copynumber: 3.7 Consensus size: 49
26882576 ATGTATAGTG
* * ** *
26882586 AGGTCATGTGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAATTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAGATAA-TT
* * * **
26882637 CGATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAGATAATT
*
26882687 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATC-TGTACTGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA-CGTGTAC-AGATAATT
* *
26882737 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
26882770 TGCGTACCAA
Statistics
Matches: 112, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
49 32 0.29
50 42 0.38
51 38 0.34
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (49 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACAGATAATT
Found at i:26883891 original size:26 final size:26
Alignment explanation
Indices: 26883855--26883906 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
26883845 TGGCCAAATA
26883855 TATTGGTCTTTAGTGAGCTAATGATT
1 TATTGGTCTTTAGTGAGCTAATGATT
26883881 TATTGGTCTTTAGTGAGCTAATGATT
1 TATTGGTCTTTAGTGAGCTAATGATT
26883907 CTAACTTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (26 bp):
TATTGGTCTTTAGTGAGCTAATGATT
Found at i:26884760 original size:22 final size:21
Alignment explanation
Indices: 26884720--26884760 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
26884710 TACTAGCCAC
* *
26884720 AGGGGCACACTCCCTTGTGGG
1 AGGGGCACACGCCCGTGTGGG
26884741 AGGGGCAACACGCCCGTGTG
1 AGGGGC-ACACGCCCGTGTG
26884761 ACCAATTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.17, C:0.29, G:0.39, T:0.15
Consensus pattern (21 bp):
AGGGGCACACGCCCGTGTGGG
Found at i:26888871 original size:47 final size:50
Alignment explanation
Indices: 26888798--26888929 Score: 193
Period size: 47 Copynumber: 2.7 Consensus size: 50
26888788 TAAGGTGTAA
* *
26888798 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-CATCA-A-G
1 TGCTGATGCCATGTCCCAAACATGGTCTTACACTAGCTC-TCACAT-ATACG
26888847 T-C-GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATATACG
1 TGCTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATATACG
26888895 TGCTGATGCCATGTCCCAAACATGGTCTTACACTA
1 TGCTGATGCCATGTCCCAAACATGGTCTTACACTA
26888930 ACATATCTTG
Statistics
Matches: 76, Mismatches: 2, Indels: 9
0.87 0.02 0.10
Matches are distributed among these distances:
46 3 0.04
47 37 0.49
48 3 0.04
49 2 0.03
50 31 0.41
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.27
Consensus pattern (50 bp):
TGCTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATATACG
Found at i:26888967 original size:44 final size:45
Alignment explanation
Indices: 26888899--26889015 Score: 139
Period size: 46 Copynumber: 2.6 Consensus size: 45
26888889 TATACGTGCT
* *
26888899 GATGCCATGTCCCAAACATGGTCTTACACTAAC-ATATCTTGTA-GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAACTACATCTTG-AGGCC
* * *
26888945 GATGCATGTGCCAGCCATGTCTTACACTAGCTTACATCTTGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAAC-TACATCTTGAGGCC
26888991 GATGCATGTCCCAGACATGTCTTAC
1 GATGCATGTCCCAGACATGTCTTAC
26889016 TCTGGCACAC
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
44 12 0.20
45 12 0.20
46 37 0.61
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAACTACATCTTGAGGCC
Found at i:26890754 original size:46 final size:46
Alignment explanation
Indices: 26890668--26890785 Score: 152
Period size: 46 Copynumber: 2.6 Consensus size: 46
26890658 TTATTTGTGT
26890668 GCCAGTGTAAGACATGTCTAGGACATGCATCAACCTCGAGATGTAA
1 GCCAGTGTAAGACATGTCTAGGACATGCATCAACCTCGAGATGTAA
* *
26890714 GCCAGTGTAAGACATGTCTTGGACATGCATC-AGCTACGAGATGT--
1 GCCAGTGTAAGACATGTCTAGGACATGCATCAACCT-CGAGATGTAA
* * *
26890758 GTCAATCTAAGACCATGTCTAGGACATG
1 GCCAGTGTAAGA-CATGTCTAGGACATG
26890786 GCATTGGCAT
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
44 9 0.14
45 17 0.27
46 38 0.59
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.24
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTAGGACATGCATCAACCTCGAGATGTAA
Found at i:26898580 original size:41 final size:41
Alignment explanation
Indices: 26898519--26898601 Score: 139
Period size: 41 Copynumber: 2.0 Consensus size: 41
26898509 TTCCAAAGGA
26898519 AGGGACTATTACGTCAGGAAACCAAAACCATAACTTAGTTT
1 AGGGACTATTACGTCAGGAAACCAAAACCATAACTTAGTTT
** *
26898560 AGGGACTATTGGGTCGGGAAACCAAAACCATAACTTAGTTT
1 AGGGACTATTACGTCAGGAAACCAAAACCATAACTTAGTTT
26898601 A
1 A
26898602 CTGACCACCC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.24
Consensus pattern (41 bp):
AGGGACTATTACGTCAGGAAACCAAAACCATAACTTAGTTT
Found at i:26907301 original size:43 final size:42
Alignment explanation
Indices: 26907221--26907376 Score: 102
Period size: 43 Copynumber: 3.7 Consensus size: 42
26907211 GATTTCATTA
* *
26907221 TGTGATTCGTGTAAGACCACATCTGGGACGTTGGCATCAATT
1 TGTGATTCGTGTAAGACCACATCTGGGACATCGGCATCAATT
** * *
26907263 TGTGATTTACGTGTAAGACCATGT-TGGGACATCGGCATC-GTA
1 TGTGA-TT-CGTGTAAGACCACATCTGGGACATCGGCATCAATT
* ** * ** *
26907305 TATGAGTTCGTGTAAGACCTTATTTGGGACAGT-GGCATTGATA
1 TGTGA-TTCGTGTAAGACCACATCTGGGACA-TCGGCATCAATT
* * *
26907348 TGTGATTACATGTAAGGCCACGTCTGGGA
1 TGTGATT-CGTGTAAGACCACATCTGGGA
26907377 TGTTAGCGTT
Statistics
Matches: 89, Mismatches: 19, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
41 13 0.15
42 26 0.29
43 37 0.42
44 13 0.15
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.31
Consensus pattern (42 bp):
TGTGATTCGTGTAAGACCACATCTGGGACATCGGCATCAATT
Found at i:26914088 original size:13 final size:13
Alignment explanation
Indices: 26914070--26914094 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26914060 TACTTTATAT
26914070 GTGTGAAAATTTC
1 GTGTGAAAATTTC
26914083 GTGTGAAAATTT
1 GTGTGAAAATTT
26914095 TATCGTTTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:26915319 original size:42 final size:43
Alignment explanation
Indices: 26915206--26915372 Score: 214
Period size: 43 Copynumber: 3.9 Consensus size: 43
26915196 TAGGATTCCA
* *
26915206 ATATATGATT-CGTGTAAGACCACGTCTGGGACGTTGGCATCG
1 ATATATGATTACGTGTAAGACCATGTCTGGGACATTGGCATCG
* *
26915248 ATTTGTGATTTACGTGTAAGACCATGTCTGGGACATTGGCATC-
1 ATATATGA-TTACGTGTAAGACCATGTCTGGGACATTGGCATCG
* *
26915291 ATATATGAGTT-CGTGTAAGACCCTGTCTGGGACAGTGGCATCG
1 ATATATGA-TTACGTGTAAGACCATGTCTGGGACATTGGCATCG
* * *
26915334 ATATGTGATTACATGTAAGACCATGTCTGGGACGTTGGC
1 ATATATGATTACGTGTAAGACCATGTCTGGGACATTGGC
26915373 GTTGTACGAG
Statistics
Matches: 107, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
42 37 0.35
43 41 0.38
44 29 0.27
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (43 bp):
ATATATGATTACGTGTAAGACCATGTCTGGGACATTGGCATCG
Found at i:26915372 original size:85 final size:85
Alignment explanation
Indices: 26915206--26915372 Score: 259
Period size: 85 Copynumber: 2.0 Consensus size: 85
26915196 TAGGATTCCA
* *
26915206 ATATATGATTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTGTGATTTACGTGTAAGACC
1 ATATATGATTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTTACATGTAAGACC
26915271 ATGTCTGGGACATTGGCATC
66 ATGTCTGGGACATTGGCATC
26915291 ATATATGAGTTCGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATGTGA-TTACATGTAAG
1 ATATATGA-TTCGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATGTGATTTACATGTAAG
*
26915353 ACCATGTCTGGGACGTTGGC
63 ACCATGTCTGGGACATTGGC
26915373 GTTGTACGAG
Statistics
Matches: 76, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
85 38 0.50
86 37 0.49
87 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (85 bp):
ATATATGATTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTTACATGTAAGACC
ATGTCTGGGACATTGGCATC
Found at i:26923417 original size:15 final size:15
Alignment explanation
Indices: 26923397--26923449 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
26923387 CGTATCTTGG
26923397 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
26923412 TTTCTTTATTTTGGG
1 TTTCTTTATTCTGGA
* *
26923427 TTTCTCTA-CCTTGGA
1 TTTCTTTATTC-TGGA
26923442 TTTCTTTA
1 TTTCTTTA
26923450 CTCGGTTTTC
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.11, C:0.15, G:0.13, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:26946601 original size:46 final size:46
Alignment explanation
Indices: 26946534--26946711 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
26946524 TGTAACCCGC
* *
26946534 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCAGG-TGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTC-GGATGTTCGCAT
* * *
26946580 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATG-TTCGCAT
* *** * **
26946626 ACATCTCTCGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCAGACTCAACTCAACGAGCTCGGATGTTCGCAT
* *
26946673 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATG
26946712 CCCAAATATC
Statistics
Matches: 106, Mismatches: 22, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
45 2 0.02
46 69 0.65
47 35 0.33
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGTTCGCAT
Found at i:26946651 original size:93 final size:93
Alignment explanation
Indices: 26946542--26946713 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
26946532 GCCCATAAGT
* * **
26946542 GAACTCGGACTCAACTCAATGAGCTCAGG-TGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
26946606 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
* *
26946635 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
26946700 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
26946714 CAAATATCCT
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:26946728 original size:46 final size:44
Alignment explanation
Indices: 26946585--26946728 Score: 107
Period size: 46 Copynumber: 3.1 Consensus size: 44
26946575 CGCATCCATA
* *
26946585 AGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * *
26946634 --CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCAGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
*
26946677 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
26946724 AGTGA
1 AGTGA
26946729 CATGTCACTT
Statistics
Matches: 76, Mismatches: 9, Indels: 23
0.70 0.08 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.05
44 4 0.05
46 32 0.42
47 28 0.37
48 4 0.05
49 3 0.04
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (44 bp):
AGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:26948156 original size:42 final size:42
Alignment explanation
Indices: 26948096--26948212 Score: 130
Period size: 42 Copynumber: 2.8 Consensus size: 42
26948086 ATCGAGACTA
* *
26948096 CGTGTAAGACCATATCTGGGATATGGCATC-ATTATGAGATTT
1 CGTGTAAGACCATGTCTGGGATATGGCATCGA-TATAAGATTT
* *
26948138 CGTGTAAGACCATGTCTGGGATATGACGTCGATATAAGATTT
1 CGTGTAAGACCATGTCTGGGATATGGCATCGATATAAGATTT
* * *
26948180 TGTGTAAAACCATAG-CTGGGCTATTGGCATCGA
1 CGTGTAAGACCAT-GTCTGGGATA-TGGCATCGA
26948213 AACGAGATCC
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
42 54 0.86
43 9 0.14
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGATATGGCATCGATATAAGATTT
Found at i:26949091 original size:26 final size:26
Alignment explanation
Indices: 26949062--26949111 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
26949052 ATAGACACAC
26949062 GGGCATGT-GTCTAGGCCGTGTGTCAT
1 GGGCATGTAGTCT-GGCCGTGTGTCAT
* *
26949088 GGGCGTGTATTCTGGCCGTGTGTC
1 GGGCATGTAGTCTGGCCGTGTGTC
26949112 CCCTGCACCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.86
27 3 0.14
ACGTcount: A:0.08, C:0.20, G:0.40, T:0.32
Consensus pattern (26 bp):
GGGCATGTAGTCTGGCCGTGTGTCAT
Found at i:26953137 original size:46 final size:46
Alignment explanation
Indices: 26953079--26953346 Score: 213
Period size: 47 Copynumber: 5.7 Consensus size: 46
26953069 GGTTTATTGT
* *
26953079 GAGCAAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGA-GATGA
*
26953125 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGG-CATCGAGATGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CGAGATGA
* * * * * *
26953173 GTGCTAGTGTATGACATGTCTGGGACATGCATTGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATG-A
* * * *
26953220 -AGCCAGTGTAAGATATGTTTGGGATATGCATCGGCTACGAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGA
* * * * * * **
26953265 TAGTCTGTGTAAAACCATGTTTGGGACATGGCATC-GACTTGAGAT-A
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACGAGATGA
*
26953311 TGAGCCAGTGTAAGACCATGTCTGAGACATGGCATC
1 -GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
26953347 TGCACCTTAT
Statistics
Matches: 177, Mismatches: 35, Indels: 19
0.77 0.15 0.08
Matches are distributed among these distances:
45 1 0.01
46 70 0.40
47 77 0.44
48 28 0.16
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGA
Found at i:26953340 original size:140 final size:140
Alignment explanation
Indices: 26953084--26953341 Score: 315
Period size: 140 Copynumber: 1.8 Consensus size: 140
26953074 ATTGTGAGCA
* *
26953084 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTAG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAAACCATGTCTAG
* * * * *
26953149 GACATGGCATCGGCATCGAGATGAGTGCTAGTGTATGACATGTCTGGGACATGCATTGGCCTCGA
66 GACATGGCATCGACATCGAGATGAGAGCCAGTGTAAGACATGTCTGAGACATGCATTGGCCTCGA
26953214 GACGTAAGCC
131 GACGTAAGCC
* * * * * * * * *
26953224 AGTGTAAGATATGTTTGGGATATGCATCGGCTACGA-GATGATAGTCTGTGTAAAACCATGTTTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGAGAGCCAGTGTAAAACCATGTCTA
*
26953288 GGACATGGCATCGAC-TTGAGAT-ATGAGCCAGTGTAAGACCATGTCTGAGACATG
65 GGACATGGCATCGACATCGAGATGA-GAGCCAGTGTAAGA-CATGTCTGAGACATG
26953342 GCATCTGCAC
Statistics
Matches: 98, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
138 1 0.01
139 17 0.17
140 79 0.81
141 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAAACCATGTCTAG
GACATGGCATCGACATCGAGATGAGAGCCAGTGTAAGACATGTCTGAGACATGCATTGGCCTCGA
GACGTAAGCC
Found at i:26958880 original size:18 final size:18
Alignment explanation
Indices: 26958853--26958890 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
26958843 AGGTTAGCTT
* *
26958853 GAAAAGTGAAAAATAAAA
1 GAAAAATGAAAAAAAAAA
26958871 GAAAAATGAAAAAAAAAA
1 GAAAAATGAAAAAAAAAA
26958889 GA
1 GA
26958891 GCAAAGTAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (18 bp):
GAAAAATGAAAAAAAAAA
Found at i:26961290 original size:7 final size:7
Alignment explanation
Indices: 26961278--26961315 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
26961268 AAAATTTATA
26961278 AAAGAAG
1 AAAGAAG
26961285 AAAGAAG
1 AAAGAAG
*
26961292 AAAAAAG
1 AAAGAAG
*
26961299 AAAGACG
1 AAAGAAG
26961306 AAAGAAG
1 AAAGAAG
26961313 AAA
1 AAA
26961316 AGAATTACGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.74, C:0.03, G:0.24, T:0.00
Consensus pattern (7 bp):
AAAGAAG
Found at i:26968758 original size:46 final size:46
Alignment explanation
Indices: 26968708--26968883 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
26968698 TGGTTGAGCA
26968708 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
26968754 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
26968799 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
26968847 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26968884 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:26968864 original size:93 final size:93
Alignment explanation
Indices: 26968705--26968876 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
26968695 GGATGGTTGA
* * *
26968705 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
26968770 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
26968798 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
26968863 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
26968877 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:26984761 original size:17 final size:17
Alignment explanation
Indices: 26984723--26984759 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
26984713 TTTTATTTTA
26984723 ATTTACATTATTAAGCC
1 ATTTACATTATTAAGCC
*
26984740 ATTTACATTTTTAA-CC
1 ATTTACATTATTAAGCC
26984756 ATTT
1 ATTT
26984760 TATTTTCATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.32, C:0.16, G:0.03, T:0.49
Consensus pattern (17 bp):
ATTTACATTATTAAGCC
Found at i:26990900 original size:46 final size:44
Alignment explanation
Indices: 26990757--26990900 Score: 107
Period size: 46 Copynumber: 3.1 Consensus size: 44
26990747 CCCGCCCCTA
* *
26990757 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * * *
26990806 --CGAAGTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
26990849 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
26990896 AGTGA
1 AGTGA
26990901 CATGTCACTT
Statistics
Matches: 75, Mismatches: 10, Indels: 23
0.69 0.09 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.05
44 4 0.05
46 32 0.43
47 27 0.36
48 4 0.05
49 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:26993307 original size:15 final size:15
Alignment explanation
Indices: 26993252--26993332 Score: 98
Period size: 15 Copynumber: 5.6 Consensus size: 15
26993242 ATGAACAAAG
26993252 ATAAAGAAA-CC-GA
1 ATAAAGAAATCCAGA
26993265 ATAAAGAAATCCA-A
1 ATAAAGAAATCCAGA
*
26993279 GATAGAGAAA-CCAGA
1 -ATAAAGAAATCCAGA
26993294 ATAAAGAAATCCAGA
1 ATAAAGAAATCCAGA
* *
26993309 ATAAAGAGATCCAGG
1 ATAAAGAAATCCAGA
26993324 ATAAAGAAA
1 ATAAAGAAA
26993333 CCCAAGATAC
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
13 9 0.16
14 14 0.24
15 35 0.60
ACGTcount: A:0.59, C:0.12, G:0.17, T:0.11
Consensus pattern (15 bp):
ATAAAGAAATCCAGA
Found at i:26993315 original size:44 final size:42
Alignment explanation
Indices: 26993252--26993334 Score: 121
Period size: 44 Copynumber: 1.9 Consensus size: 42
26993242 ATGAACAAAG
*
26993252 ATAAAGAAACCGAATAAAGAAATCCAAGATAGAGAAACCAGA
1 ATAAAGAAACCGAATAAAGAAATCCAAGATAAAGAAACCAGA
* *
26993294 ATAAAGAAATCCAGAATAAAGAGATCCAGGATAAAGAAACC
1 ATAAAGAAA-CC-GAATAAAGAAATCCAAGATAAAGAAACC
26993335 CAAGATACGA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
42 9 0.25
43 2 0.06
44 25 0.69
ACGTcount: A:0.58, C:0.14, G:0.17, T:0.11
Consensus pattern (42 bp):
ATAAAGAAACCGAATAAAGAAATCCAAGATAAAGAAACCAGA
Found at i:26993341 original size:15 final size:15
Alignment explanation
Indices: 26993249--26993341 Score: 88
Period size: 15 Copynumber: 6.4 Consensus size: 15
26993239 ATTATGAACA
26993249 AAGATAAAGAAA-CC
1 AAGATAAAGAAATCC
*
26993263 GA-ATAAAGAAATCC
1 AAGATAAAGAAATCC
*
26993277 AAGATAGAGAAA-CC
1 AAGATAAAGAAATCC
26993291 -AGAATAAAGAAATCC
1 AAG-ATAAAGAAATCC
*
26993306 -AGAATAAAGAGATCC
1 AAG-ATAAAGAAATCC
* *
26993321 AGGATAAAGAAACCC
1 AAGATAAAGAAATCC
26993336 AAGATA
1 AAGATA
26993342 CGATATATGC
Statistics
Matches: 65, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
13 11 0.17
14 14 0.22
15 39 0.60
16 1 0.02
ACGTcount: A:0.58, C:0.14, G:0.17, T:0.11
Consensus pattern (15 bp):
AAGATAAAGAAATCC
Found at i:26998207 original size:19 final size:20
Alignment explanation
Indices: 26998183--26998223 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
26998173 TGTTTTACAG
26998183 AAGAAAAAA-AAACTTGCAT
1 AAGAAAAAACAAACTTGCAT
26998202 AAGAAAAAACAAACTTGCAT
1 AAGAAAAAACAAACTTGCAT
26998222 AA
1 AA
26998224 TGTTCAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.63, C:0.12, G:0.10, T:0.15
Consensus pattern (20 bp):
AAGAAAAAACAAACTTGCAT
Found at i:27003710 original size:26 final size:26
Alignment explanation
Indices: 27003681--27003730 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
27003671 ACAGTTTAAT
27003681 CCCTAGGAGATAAATT-ACCGAAATAC
1 CCCTAGG-GATAAATTGACCGAAATAC
* *
27003707 CCCTAGGGTTAAATTGACCTAAAT
1 CCCTAGGGATAAATTGACCGAAAT
27003731 GCATGTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.24
Consensus pattern (26 bp):
CCCTAGGGATAAATTGACCGAAATAC
Found at i:27009679 original size:26 final size:26
Alignment explanation
Indices: 27009650--27009705 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
27009640 TGATAAGAAT
27009650 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
27009676 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
27009702 TGAT
1 TGAT
27009706 GGGCATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:27013403 original size:40 final size:40
Alignment explanation
Indices: 27013348--27013528 Score: 249
Period size: 40 Copynumber: 4.5 Consensus size: 40
27013338 TATTCGGATA
* * * * *
27013348 ATATCTGGGCTAAGTCTCGAAGGTATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
27013388 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
**
27013428 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
27013468 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
27013508 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
27013529 ATACTTGTGT
Statistics
Matches: 127, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 13 0.10
40 112 0.88
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:27016121 original size:15 final size:15
Alignment explanation
Indices: 27016101--27016130 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
27016091 TATAACAAGT
*
27016101 TAAATAACAATAAGC
1 TAAATAACAAGAAGC
27016116 TAAATAACAAGAAGC
1 TAAATAACAAGAAGC
27016131 ACATAAATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.60, C:0.13, G:0.10, T:0.17
Consensus pattern (15 bp):
TAAATAACAAGAAGC
Found at i:27016913 original size:13 final size:13
Alignment explanation
Indices: 27016895--27016921 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
27016885 TAGTATATTG
27016895 ATATTTTTTAATA
1 ATATTTTTTAATA
27016908 ATATTTTTTAATA
1 ATATTTTTTAATA
27016921 A
1 A
27016922 ATGATTAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
ATATTTTTTAATA
Found at i:27021361 original size:27 final size:27
Alignment explanation
Indices: 27021323--27021436 Score: 160
Period size: 27 Copynumber: 4.2 Consensus size: 27
27021313 AGGAAGCGTC
27021323 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
27021350 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
* *
27021377 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGAT
* *
27021404 CTGGTAGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTATGCCACAATTATCTG-AT
27021431 CTGGTG
1 CTGGTG
27021437 ACTTCGTCAC
Statistics
Matches: 79, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
26 8 0.10
27 70 0.89
28 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGAT
Found at i:27021447 original size:27 final size:26
Alignment explanation
Indices: 27021323--27021454 Score: 133
Period size: 27 Copynumber: 4.9 Consensus size: 26
27021313 AGGAAGCGTC
* *
27021323 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCACAA-TATCTGAT
* *
27021350 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCACAA-TATCTGAT
* *
27021377 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGACTCTGCCACA-ATATCTGAT
27021404 CTGGT-AGCTCTGCCACAATATCTGTAT
1 CTGGTGA-CTCTGCCACAATATCTG-AT
*
27021431 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGACTCT-GCCACAATATCTG
27021455 GCAGCCTCGC
Statistics
Matches: 95, Mismatches: 5, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
26 8 0.08
27 85 0.89
28 2 0.02
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.34
Consensus pattern (26 bp):
CTGGTGACTCTGCCACAATATCTGAT
Found at i:27023845 original size:39 final size:39
Alignment explanation
Indices: 27023781--27023954 Score: 269
Period size: 39 Copynumber: 4.5 Consensus size: 39
27023771 TAATTGTATG
*
27023781 TGCTGGAATTATATCCGGACATCAGGTCCGCAGGCTATA
1 TGCTGGAATTATATCCGGACTTCAGGTCCGCAGGCTATA
* * * *
27023820 TGCTGGAATTATATCTGAACTTCAGGTCCGTAGGCTATG
1 TGCTGGAATTATATCCGGACTTCAGGTCCGCAGGCTATA
*
27023859 TGCTGGAATTATATCCGGACTTCAGGTCCGCAGGCTATG
1 TGCTGGAATTATATCCGGACTTCAGGTCCGCAGGCTATA
*
27023898 TGCTGGAATTTTATCCGGACTTCAGGTCCGCAGGCTATGA
1 TGCTGGAATTATATCCGGACTTCAGGTCCGCAGGCTAT-A
27023938 -GCTGGAATTATATCCGG
1 TGCTGGAATTATATCCGG
27023955 GCTTAAATTC
Statistics
Matches: 123, Mismatches: 11, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
39 123 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (39 bp):
TGCTGGAATTATATCCGGACTTCAGGTCCGCAGGCTATA
Found at i:27023978 original size:78 final size:78
Alignment explanation
Indices: 27023777--27023979 Score: 235
Period size: 78 Copynumber: 2.6 Consensus size: 78
27023767 ATCATAATTG
* * * * * * * *
27023777 TATGTGCTGGAATTATATCCGGACATCAGGTCCGCAGGCTATATGCTGGAATTATATCTGAACTT
1 TATGAGCTGGAATTATATCCGGACTTAAAGTCCGAAGACTATGTGCTGGAATTATATCCGAACTT
*
27023842 CAGGTCCGTAGGC
66 CAGGTCCGCAGGC
* * * * * * *
27023855 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGCTATGTGCTGGAATTTTATCCGGACTT
1 TATGAGCTGGAATTATATCCGGACTTAAAGTCCGAAGACTATGTGCTGGAATTATATCCGAACTT
27023920 CAGGTCCGCAGGC
66 CAGGTCCGCAGGC
* * *
27023933 TATGAGCTGGAATTATATCCGGGCTTAAATTCCGAAGACTTTGTGCT
1 TATGAGCTGGAATTATATCCGGACTTAAAGTCCGAAGACTATGTGCT
27023980 AGTGACTGGA
Statistics
Matches: 111, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
78 111 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.31
Consensus pattern (78 bp):
TATGAGCTGGAATTATATCCGGACTTAAAGTCCGAAGACTATGTGCTGGAATTATATCCGAACTT
CAGGTCCGCAGGC
Found at i:27031618 original size:39 final size:39
Alignment explanation
Indices: 27031564--27031777 Score: 340
Period size: 39 Copynumber: 5.5 Consensus size: 39
27031554 ATCATAATTG
* * *
27031564 TATGTGCTAGAATTATATTCGGACTTCAGGTCTGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
27031603 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
27031642 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
27031681 TATGTGCTGGAATTTTATCCGGACTTCA-GTTCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
27031719 TATGTGCTGGAATTTTATCTGGACTTCAGGTCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
27031758 TATGAGTTGGAATTATATCC
1 TATGTGCTGGAATTATATCC
27031778 TGGCTTAAAT
Statistics
Matches: 163, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
38 36 0.22
39 127 0.78
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.32
Consensus pattern (39 bp):
TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:27031693 original size:78 final size:77
Alignment explanation
Indices: 27031564--27031777 Score: 338
Period size: 77 Copynumber: 2.8 Consensus size: 77
27031554 ATCATAATTG
* * *
27031564 TATGTGCTAGAATTATATTCGGACTTCAGGTCTGCAGGCTATGTGCTGGAATTATATCCGGACTT
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTT
27031629 CAGGTCCGCAGGC
66 CA-GTCCGCAGGC
*
27031642 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGCTATGTGCTGGAATTTTATCCGGACTT
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTT
*
27031707 CAGTTCGCAGGC
66 CAGTCCGCAGGC
* * * *
27031719 TATGTGCTGGAATTTTATCTGGACTTCAGGTCCGCAGGCTATGAGTTGGAATTATATCC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGCTATGTGCTGGAATTATATCC
27031778 TGGCTTAAAT
Statistics
Matches: 126, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
77 63 0.50
78 63 0.50
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.32
Consensus pattern (77 bp):
TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTT
CAGTCCGCAGGC
Found at i:27031769 original size:116 final size:117
Alignment explanation
Indices: 27031564--27031777 Score: 349
Period size: 116 Copynumber: 1.8 Consensus size: 117
27031554 ATCATAATTG
*
27031564 TATGTGCTAGAATTATATTCGGACTTCAGGTCTGCAGGCTATGTGCTGGAATTATATCCGGACTT
1 TATGTGCTAGAATTATATCCGGACTTCAGGTCTGCAGGCTATGTGCTGGAATTATATCCGGACTT
*
27031629 CAGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
66 CAGGTCCGCAGGCTATGAGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
* * * * *
27031681 TATGTGCTGGAATTTTATCCGGACTTCAGTTC-GCAGGCTATGTGCTGGAATTTTATCTGGACTT
1 TATGTGCTAGAATTATATCCGGACTTCAGGTCTGCAGGCTATGTGCTGGAATTATATCCGGACTT
*
27031745 CAGGTCCGCAGGCTATGAGTTGGAATTATATCC
66 CAGGTCCGCAGGCTATGAGCTGGAATTATATCC
27031778 TGGCTTAAAT
Statistics
Matches: 89, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
116 61 0.69
117 28 0.31
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.32
Consensus pattern (117 bp):
TATGTGCTAGAATTATATCCGGACTTCAGGTCTGCAGGCTATGTGCTGGAATTATATCCGGACTT
CAGGTCCGCAGGCTATGAGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:27031803 original size:116 final size:117
Alignment explanation
Indices: 27031564--27031806 Score: 337
Period size: 116 Copynumber: 2.1 Consensus size: 117
27031554 ATCATAATTG
*
27031564 TATGTGCTAGAATTATATTCGGACTTCAGGTCTGCAGGCTATGTGCTGGAATTATATCCGGACTT
1 TATGTGCTAGAATTATATCCGGACTTCAGGTCTGCAGGCTATGTGCTGGAATTATATCCGGACTT
* * * * *
27031629 CAGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
66 CAGGTCCGCAGGCTATGAGCTGGAATTATATCCGGACTTAAAGTCCGAAGAC
* * * * *
27031681 TATGTGCTGGAATTTTATCCGGACTTCAGTTC-GCAGGCTATGTGCTGGAATTTTATCTGGACTT
1 TATGTGCTAGAATTATATCCGGACTTCAGGTCTGCAGGCTATGTGCTGGAATTATATCCGGACTT
* *
27031745 CAGGTCCGCAGGCTATGAGTTGGAATTATATCCTGG-CTTAAATTCCGAAGAC
66 CAGGTCCGCAGGCTATGAGCTGGAATTATATCC-GGACTTAAAGTCCGAAGAC
*
27031797 TTTGTGCTAG
1 TATGTGCTAG
27031807 TGACTGGACC
Statistics
Matches: 110, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
116 80 0.73
117 30 0.27
ACGTcount: A:0.21, C:0.20, G:0.26, T:0.33
Consensus pattern (117 bp):
TATGTGCTAGAATTATATCCGGACTTCAGGTCTGCAGGCTATGTGCTGGAATTATATCCGGACTT
CAGGTCCGCAGGCTATGAGCTGGAATTATATCCGGACTTAAAGTCCGAAGAC
Found at i:27040086 original size:27 final size:27
Alignment explanation
Indices: 27040046--27040132 Score: 115
Period size: 27 Copynumber: 3.2 Consensus size: 27
27040036 AGGAAGCGTC
*
27040046 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
27040073 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
27040100 CGGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
27040127 CTGGTG
1 CTGGTG
27040133 ACTTCGTCAC
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
26 8 0.15
27 43 0.83
28 1 0.02
ACGTcount: A:0.17, C:0.24, G:0.25, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:27046952 original size:46 final size:44
Alignment explanation
Indices: 27046845--27046971 Score: 141
Period size: 46 Copynumber: 2.8 Consensus size: 44
27046835 TCTCAAATAT
27046845 TCGT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATC
1 TCGTAGCCGATG-CATGTCCCAGACAT-GTCTTACACTGACACATC
** * * *
27046890 TCGTAGTTGATCCATGTCCTAGACATGTCTTACACTGGCTTACATC
1 TCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGAC--ACATC
*
27046936 TCG-AGGCCGATGCATGTCCCAGGCATGTCTTACACT
1 TCGTA-GCCGATGCATGTCCCAGACATGTCTTACACT
27046972 AGTACAAAAT
Statistics
Matches: 68, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
44 12 0.18
45 18 0.26
46 38 0.56
ACGTcount: A:0.21, C:0.30, G:0.20, T:0.28
Consensus pattern (44 bp):
TCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGACACATC
Found at i:27048884 original size:3 final size:3
Alignment explanation
Indices: 27048876--27048917 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
27048866 TTCCACATTT
*
27048876 TTC TTC TTC TTC TTC TTC TTC TTT TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
27048918 AGACGAGGCT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:27054033 original size:46 final size:46
Alignment explanation
Indices: 27053907--27054034 Score: 211
Period size: 46 Copynumber: 2.8 Consensus size: 46
27053897 TGTTACCCGC
* * * *
27053907 CCATAAGTGAACTGGGACTCAACTCAACGTGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
*
27053953 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
27053999 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
27054035 ATGCCTAGTT
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.29, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
Found at i:27063319 original size:20 final size:18
Alignment explanation
Indices: 27063296--27063336 Score: 55
Period size: 20 Copynumber: 2.2 Consensus size: 18
27063286 AAACTAAGTA
27063296 ATATAATAAGAATATATAAT
1 ATATAATAA-AATATAT-AT
*
27063316 ATATAATAAAATTTATAT
1 ATATAATAAAATATATAT
27063334 ATA
1 ATA
27063337 ATGTTACAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 5 0.25
19 6 0.30
20 9 0.45
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (18 bp):
ATATAATAAAATATATAT
Found at i:27065362 original size:4 final size:4
Alignment explanation
Indices: 27065355--27065379 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
27065345 AATAAATAGA
27065355 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
27065380 CCTTTTGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:27066198 original size:87 final size:86
Alignment explanation
Indices: 27065881--27066201 Score: 250
Period size: 87 Copynumber: 3.7 Consensus size: 86
27065871 GACAATACAG
* * * *
27065881 AGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACATTTGAAGGTCAGATCTACTATGTCTTC
1 AGAT-CCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTCTTC
27065946 GA-TTT-TCTCCTTGTAAACACGA
65 -ACTTTGTCTCCTTGTAAACAC-A
* * * *
27065968 GGATGCCAAATCATCTTGGACCTGCTTCAGTATAAACATTTGAAGGTTAGATCTGCTATGT-GT-
1 AGAT-CCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTCTTC
* * *
27066031 -C--TGCTCTCCATCG-AAGGAGATGCC
65 ACTTTG-TCTCC-TTGTAA--ACA--CA
* * ** * * * * *
27066055 AGAT-C-TATTATCTTGGATCTGCTTTTGTGTGAGAACATCCGAAAGTAAAATCTGCTATGTCTT
1 AGATCCAAATCATCTTGGATCTGCTTCAGTAT-A-AACATCTGAAGGTTAGATCTGCTATGTCTT
27066118 CACTTTGT-TCCTTGTAAACACA
64 CACTTTGTCTCCTTGTAAACACA
*
27066140 AGAATCCCAAATCATCTTGGATTTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGT
1 AG-AT-CCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGT
27066202 GTTTGCCCTC
Statistics
Matches: 179, Mismatches: 35, Indels: 40
0.70 0.14 0.16
Matches are distributed among these distances:
82 1 0.01
84 26 0.15
85 7 0.04
86 27 0.15
87 85 0.47
88 5 0.03
89 25 0.14
90 1 0.01
91 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (86 bp):
AGATCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTCTTCA
CTTTGTCTCCTTGTAAACACA
Found at i:27078444 original size:20 final size:20
Alignment explanation
Indices: 27078434--27078474 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
27078424 AAAATAAGTA
27078434 ATATAATAAGAATATATAAT
1 ATATAATAAGAATATATAAT
*
27078454 ATATAATAA-AATTTAT-AT
1 ATATAATAAGAATATATAAT
27078472 ATA
1 ATA
27078475 ATGTTACAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 5 0.25
19 6 0.30
20 9 0.45
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (20 bp):
ATATAATAAGAATATATAAT
Found at i:27083090 original size:131 final size:130
Alignment explanation
Indices: 27082879--27083255 Score: 409
Period size: 131 Copynumber: 2.9 Consensus size: 130
27082869 AGGGATCTTT
* * * * * *
27082879 GATTGTTTTGAACAAATGAAAAAGCGCCACCCAGCACAATAGGGCACGATTCTCAAATCGCCAAA
1 GATTGTTTTGAACAAATGAGAAATCGCAACCCAGCACGATAGGGCACGATTCTCGAATTGCCAAA
* ** *
27082944 CATCGAACCTCGCCTTCGTTTTGAAAGGTTTTTA-ATAAACATGAGTGAGAA-CCTAAAGGAATA
66 CATCGAACATCGCCTTCGTTTT-AAAGGTTTTTAGA-AAACATGAACGA-AATCCAAAAGGAATA
27083007 TTC
128 TTC
* * * *
27083010 GATTGTTTTGAACAAATGAGAAATCACAACCCAACACGGTAGGACACGATTCTCGAATTGCCAAA
1 GATTGTTTTGAACAAATGAGAAATCGCAACCCAGCACGATAGGGCACGATTCTCGAATTGCCAAA
* * * *
27083075 CATCGAACATAGCCTTCGTTTTAAAGAGTTTTTAGAAAACATGAACGAAATTCAAAAGGGATGTT
66 CATCGAACATCGCCTTCGTTTTAAAG-GTTTTTAGAAAACATGAACGAAATCCAAAAGGAATATT
27083140 C
130 C
* ** * * * * *
27083141 GATT-ATTTGAGTAAACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCACGAATTGTCAA
1 GATTGTTTTGAACAAATGAGAAATCGCAACCCAGCACGATAGGGCACGATT-CTCGAATTGCCAA
* * * * *
27083205 ATATCGAACATCGTCTTCGTTTTAAAGGATTTTAGAAGACATGAATGAAAT
65 ACATCGAACATCGCCTTCGTTTTAAAGGTTTTTAGAAAACATGAACGAAAT
27083256 TCTAAAGGGA
Statistics
Matches: 207, Mismatches: 35, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
130 64 0.31
131 142 0.69
132 1 0.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.26
Consensus pattern (130 bp):
GATTGTTTTGAACAAATGAGAAATCGCAACCCAGCACGATAGGGCACGATTCTCGAATTGCCAAA
CATCGAACATCGCCTTCGTTTTAAAGGTTTTTAGAAAACATGAACGAAATCCAAAAGGAATATTC
Found at i:27086731 original size:15 final size:15
Alignment explanation
Indices: 27086707--27086736 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
27086697 ATCTTAAAAA
*
27086707 TTCTATTTCTATTTT
1 TTCTAATTCTATTTT
27086722 TTCTAATTCTATTTT
1 TTCTAATTCTATTTT
27086737 CTTTGGACTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.13, G:0.00, T:0.70
Consensus pattern (15 bp):
TTCTAATTCTATTTT
Found at i:27088551 original size:26 final size:26
Alignment explanation
Indices: 27088514--27088571 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
27088504 TGATACAAAT
27088514 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
27088540 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
27088566 TGATAA
1 TGATAA
27088572 GAATTTCATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:27092569 original size:23 final size:23
Alignment explanation
Indices: 27092539--27092587 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
27092529 CTTTACTATG
*
27092539 TTTATCTAAATAAGGTACATATT
1 TTTATCTAAATAAGATACATATT
27092562 TTTATCTAAATAAGATACATATT
1 TTTATCTAAATAAGATACATATT
27092585 TTT
1 TTT
27092588 TTATACATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.39, C:0.08, G:0.06, T:0.47
Consensus pattern (23 bp):
TTTATCTAAATAAGATACATATT
Found at i:27101467 original size:40 final size:41
Alignment explanation
Indices: 27101419--27101579 Score: 157
Period size: 41 Copynumber: 3.9 Consensus size: 41
27101409 TGTAAAATAT
* *
27101419 AGAGCAATAGCGGCATTTTTGGTAAAACGTCGCTAAAAA-T
1 AGAGCAATAGCGGCATTTTTGGTAAAACGCCGCTAAAAACC
* *
27101459 AGAGCAATATG-GTCATTTTTTGCTAAAACGCCGCTAAAAACC
1 AGAGCAATA-GCGGCA-TTTTTGGTAAAACGCCGCTAAAAACC
* * ** *
27101501 AGAGCATTAGCTGCGCTTTCGGTAAAACGCCGCTAAAAACC
1 AGAGCAATAGCGGCATTTTTGGTAAAACGCCGCTAAAAACC
* * * *
27101542 AGAGCATTAGCGGCGCTTTCT-GTAAAACGCCGTTAAAA
1 AGAGCAATAGCGGC-ATTTTTGGTAAAACGCCGCTAAAA
27101580 GTCATACAAC
Statistics
Matches: 99, Mismatches: 17, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
40 12 0.12
41 76 0.77
42 11 0.11
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (41 bp):
AGAGCAATAGCGGCATTTTTGGTAAAACGCCGCTAAAAACC
Found at i:27101765 original size:7 final size:7
Alignment explanation
Indices: 27101749--27101797 Score: 53
Period size: 7 Copynumber: 7.0 Consensus size: 7
27101739 TATCATTATA
27101749 GTTTAAG
1 GTTTAAG
*
27101756 GTTTATG
1 GTTTAAG
27101763 GTTTAAG
1 GTTTAAG
* * *
27101770 ATATATG
1 GTTTAAG
*
27101777 GTTTAGG
1 GTTTAAG
27101784 GTTTAAG
1 GTTTAAG
27101791 GTTTAAG
1 GTTTAAG
27101798 AGTTAATTAG
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.27, C:0.00, G:0.29, T:0.45
Consensus pattern (7 bp):
GTTTAAG
Found at i:27101766 original size:14 final size:14
Alignment explanation
Indices: 27101744--27101797 Score: 63
Period size: 14 Copynumber: 3.9 Consensus size: 14
27101734 TTAATTATCA
*
27101744 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
*
27101758 TTATGGTTTAAGAT
1 TTATGGTTTAAGGT
* *
27101772 ATATGGTTTAGGGT
1 TTATGGTTTAAGGT
*
27101786 TTAAGGTTTAAG
1 TTATGGTTTAAG
27101798 AGTTAATTAG
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.46
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:27101894 original size:7 final size:7
Alignment explanation
Indices: 27101833--27101940 Score: 67
Period size: 7 Copynumber: 15.1 Consensus size: 7
27101823 GATGAATTAT
27101833 GGGTTTA
1 GGGTTTA
27101840 GGG-TTA
1 GGGTTTA
*
27101846 GAGTTTA
1 GGGTTTA
* *
27101853 AGGTGTAA
1 GGGT-TTA
*
27101861 GGGTTTG
1 GGGTTTA
*
27101868 GGGTTAA
1 GGGTTTA
*
27101875 GGGTTAA
1 GGGTTTA
27101882 GGGTTTA
1 GGGTTTA
27101889 GGGTTTA
1 GGGTTTA
*
27101896 GGATTTA
1 GGGTTTA
*
27101903 GTGTTTA
1 GGGTTTA
*
27101910 TGGG-ATA
1 -GGGTTTA
*
27101917 GGGGTTAAA
1 -GGGTT-TA
*
27101926 AGGTTTA
1 GGGTTTA
27101933 GGGTTTA
1 GGGTTTA
27101940 G
1 G
27101941 ATTAATTAGT
Statistics
Matches: 75, Mismatches: 21, Indels: 10
0.71 0.20 0.09
Matches are distributed among these distances:
6 5 0.07
7 58 0.77
8 11 0.15
9 1 0.01
ACGTcount: A:0.22, C:0.00, G:0.41, T:0.37
Consensus pattern (7 bp):
GGGTTTA
Found at i:27105303 original size:36 final size:36
Alignment explanation
Indices: 27105252--27105324 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
27105242 TGGTTTATCG
*
27105252 AAAAATTTCAGATTATTGCTCGAGACAAAATACCGC
1 AAAAATTTCAAATTATTGCTCGAGACAAAATACCGC
27105288 AAAAATTTCAAATTATTGCTCGAGACAAAATACCGC
1 AAAAATTTCAAATTATTGCTCGAGACAAAATACCGC
27105324 A
1 A
27105325 GACTTCCGGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (36 bp):
AAAAATTTCAAATTATTGCTCGAGACAAAATACCGC
Found at i:27106443 original size:15 final size:16
Alignment explanation
Indices: 27106423--27106456 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
27106413 AATTTAATAT
27106423 ATAAAGT-CATATGAA
1 ATAAAGTACATATGAA
*
27106438 ATAAAGTACATATGCA
1 ATAAAGTACATATGAA
27106454 ATA
1 ATA
27106457 TTGCACATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.53, C:0.09, G:0.12, T:0.26
Consensus pattern (16 bp):
ATAAAGTACATATGAA
Found at i:27107739 original size:21 final size:22
Alignment explanation
Indices: 27107693--27107745 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
27107683 AGAAAACCAT
*
27107693 TTTATGTGTTAAATGCTGAAAA
1 TTTAGGTGTTAAATGCTGAAAA
*
27107715 TTTAGGTGTTAAATGCTG-CAA
1 TTTAGGTGTTAAATGCTGAAAA
27107736 TTTATGGTGT
1 TTTA-GGTGT
27107746 CTGAAAGTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 6 0.21
22 22 0.79
ACGTcount: A:0.28, C:0.06, G:0.23, T:0.43
Consensus pattern (22 bp):
TTTAGGTGTTAAATGCTGAAAA
Found at i:27107832 original size:7 final size:7
Alignment explanation
Indices: 27107820--27107845 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
27107810 TGATTTAATA
27107820 TAATGCT
1 TAATGCT
27107827 TAATGCT
1 TAATGCT
27107834 TAATGCT
1 TAATGCT
27107841 TAATG
1 TAATG
27107846 GTTTGTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.31, C:0.12, G:0.15, T:0.42
Consensus pattern (7 bp):
TAATGCT
Found at i:27108701 original size:20 final size:20
Alignment explanation
Indices: 27108673--27108710 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
27108663 TTTTTGGGAG
27108673 AAGCATCGCTAAAAGTCAAA
1 AAGCATCGCTAAAAGTCAAA
* *
27108693 AAGCGTCGCTAAAGGTCA
1 AAGCATCGCTAAAAGTCA
27108711 TGACCTTTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.21, G:0.21, T:0.16
Consensus pattern (20 bp):
AAGCATCGCTAAAAGTCAAA
Found at i:27115485 original size:16 final size:16
Alignment explanation
Indices: 27115455--27115484 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
27115445 AGATCATTAC
27115455 ATGACATATTATTTTG
1 ATGACATATTATTTTG
27115471 ATGACATATT-TTTT
1 ATGACATATTATTTT
27115485 TATCATATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.30, C:0.07, G:0.10, T:0.53
Consensus pattern (16 bp):
ATGACATATTATTTTG
Found at i:27119527 original size:7 final size:7
Alignment explanation
Indices: 27119515--27119540 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
27119505 GATAATAATT
27119515 TTATATC
1 TTATATC
27119522 TTATATC
1 TTATATC
27119529 TTATATC
1 TTATATC
27119536 TTATA
1 TTATA
27119541 CTAATATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.31, C:0.12, G:0.00, T:0.58
Consensus pattern (7 bp):
TTATATC
Found at i:27124860 original size:47 final size:47
Alignment explanation
Indices: 27124780--27124889 Score: 152
Period size: 47 Copynumber: 2.4 Consensus size: 47
27124770 ATACATTGAG
27124780 TTGGCTTCAGGCCA-GATATAGCACTTCGAGTGCAAGATATACTAAT
1 TTGGCTTCAGGCCATGATATAGCACTTCGAGTGCAAGATATACTAAT
* *
27124826 TTGGCTTCAGGCCATGATATAGCACTTC-AGGTGCAAGTTATACTGAT
1 TTGGCTTCAGGCCATGATATAGCACTTCGA-GTGCAAGATATACTAAT
** *
27124873 TTGTTTTCGGGCCATGA
1 TTGGCTTCAGGCCATGA
27124890 ATATTGGCTG
Statistics
Matches: 57, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
46 15 0.26
47 42 0.74
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (47 bp):
TTGGCTTCAGGCCATGATATAGCACTTCGAGTGCAAGATATACTAAT
Found at i:27127016 original size:49 final size:50
Alignment explanation
Indices: 27126936--27127280 Score: 417
Period size: 49 Copynumber: 6.9 Consensus size: 50
27126926 AGCTATTGTG
*
27126936 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * **
27126986 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
27127035 AGGTCACATGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * * *
27127085 -GGTCGCATGTTTAGTACTAAGTGCAGGTTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * * * **
27127135 CGATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAAATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
27127185 AGGTCACGTGTGTAGTACTAAGTGCAGGCTATTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
27127235 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
27127281 GCTTCGGCTA
Statistics
Matches: 245, Mismatches: 47, Indels: 7
0.82 0.16 0.02
Matches are distributed among these distances:
49 123 0.50
50 88 0.36
51 34 0.14
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Done.