Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 95 of 362
Found at i:30586284 original size:40 final size:40
Alignment explanation
Indices: 30586206--30586385 Score: 283
Period size: 40 Copynumber: 4.5 Consensus size: 40
30586196 AACCCAAGTA
* *
30586206 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
*
30586245 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCAAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
30586285 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* * *
30586325 CCTTTGGGGCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
30586365 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
30586386 GTCATCCGAA
Statistics
Matches: 130, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 13 0.10
40 114 0.88
41 3 0.02
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:30589081 original size:40 final size:40
Alignment explanation
Indices: 30589037--30589260 Score: 246
Period size: 40 Copynumber: 5.6 Consensus size: 40
30589027 GCTCCTCGTT
*
30589037 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
30589077 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
30589117 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* *
30589156 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTATAGTAACTCGCA
* * * * *
30589196 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
30589237 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
30589261 ACATCATTCA
Statistics
Matches: 161, Mismatches: 13, Indels: 20
0.83 0.07 0.10
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 114 0.71
41 13 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:30589139 original size:79 final size:78
Alignment explanation
Indices: 30589037--30589261 Score: 274
Period size: 79 Copynumber: 2.8 Consensus size: 78
30589027 GCTCCTCGTT
* *
30589037 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
30589102 ATTTAGTAACTCGCA
64 ATTTAGTAACTCGCA
* * *
30589117 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
*
30589181 ATTTAGTATCTCGCA
64 ATTTAGTAACTCGCA
* * * * *
30589196 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
30589260 GA
63 GA
30589262 CATCATTCAA
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
78 4 0.03
79 66 0.53
80 43 0.34
81 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
TTAGTAACTCGCA
Found at i:30589221 original size:119 final size:120
Alignment explanation
Indices: 30589037--30589261 Score: 298
Period size: 119 Copynumber: 1.9 Consensus size: 120
30589027 GCTCCTCGTT
30589037 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
30589102 ATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * * **
30589156 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACC
* *
30589218 CGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
63 CGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
30589262 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
118 6 0.07
119 65 0.71
120 21 0.23
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:30591121 original size:20 final size:20
Alignment explanation
Indices: 30591096--30591135 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
30591086 TCACACATTC
*
30591096 ATAATTA-CATATTCTAGACA
1 ATAATTATCACATTC-AGACA
30591116 ATAATTATCACATTCAGACA
1 ATAATTATCACATTCAGACA
30591136 TTTCGGTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.45, C:0.17, G:0.05, T:0.33
Consensus pattern (20 bp):
ATAATTATCACATTCAGACA
Found at i:30593733 original size:27 final size:27
Alignment explanation
Indices: 30593703--30593828 Score: 114
Period size: 27 Copynumber: 4.7 Consensus size: 27
30593693 AAAATGTCAA
* *
30593703 AAAAGAATGGCCTTTATGATGTATTGC
1 AAAAGAATAGCCTTTATGATGTATTAC
*
30593730 AAAAGAATAGCCTTTGTGATGTATTAC
1 AAAAGAATAGCCTTTATGATGTATTAC
* *
30593757 AAAAGAATAGCCTTTGTGGAAAAGT-TT--
1 AAAAGAATAGCCTTTAT-G--ATGTATTAC
* ***
30593784 AAAAGAATAGCCTTTGTGGCATATTAC
1 AAAAGAATAGCCTTTATGATGTATTAC
*
30593811 AAAAGACTAGCCTTTATG
1 AAAAGAATAGCCTTTATG
30593829 GCAAAGTCTA
Statistics
Matches: 84, Mismatches: 9, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
24 1 0.01
25 2 0.02
26 1 0.01
27 74 0.88
28 1 0.01
29 2 0.02
30 3 0.04
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (27 bp):
AAAAGAATAGCCTTTATGATGTATTAC
Found at i:30593762 original size:54 final size:52
Alignment explanation
Indices: 30593703--30593843 Score: 140
Period size: 54 Copynumber: 2.6 Consensus size: 52
30593693 AAAATGTCAA
* * **
30593703 AAAAGAATGGCCTTTATG-ATGTATTGCAAAAGAATAGCCTTTGTGATGTATTAC
1 AAAAGAATAGCCTTTATGAAAGT-TT--AAAAGAATAGCCTTTGTGACATATTAC
* *
30593757 AAAAGAATAGCCTTTGTGGAAAAGTTTAAAAGAATAGCCTTTGTGGCATATTAC
1 AAAAGAATAGCCTTTAT-G-AAAGTTTAAAAGAATAGCCTTTGTGACATATTAC
* *
30593811 AAAAGACTAGCCTTTATGGCAAAGTCTAAAAGA
1 AAAAGAATAGCCTTTAT-G-AAAGTTTAAAAGA
30593844 TTGAGTTGTA
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
54 68 0.92
55 1 0.01
56 2 0.03
57 3 0.04
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.29
Consensus pattern (52 bp):
AAAAGAATAGCCTTTATGAAAGTTTAAAAGAATAGCCTTTGTGACATATTAC
Found at i:30593830 original size:27 final size:27
Alignment explanation
Indices: 30593724--30593831 Score: 119
Period size: 27 Copynumber: 4.0 Consensus size: 27
30593714 CTTTATGATG
* ***
30593724 TATTGCAAAAGAATAGCCTTTGTGATG
1 TATTACAAAAGAATAGCCTTTGTGGCA
*
30593751 TATTACAAAAGAATAGCCTTTGTGGAA
1 TATTACAAAAGAATAGCCTTTGTGGCA
* *
30593778 AAGTT-TAAAAGAATAGCCTTTGTGGCA
1 TA-TTACAAAAGAATAGCCTTTGTGGCA
* *
30593805 TATTACAAAAGACTAGCCTTTATGGCA
1 TATTACAAAAGAATAGCCTTTGTGGCA
30593832 AAGTCTAAAA
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 2 0.03
27 64 0.94
28 2 0.03
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (27 bp):
TATTACAAAAGAATAGCCTTTGTGGCA
Found at i:30593841 original size:27 final size:27
Alignment explanation
Indices: 30593757--30593843 Score: 104
Period size: 27 Copynumber: 3.2 Consensus size: 27
30593747 GATGTATTAC
* *
30593757 AAAAGAATAGCCTTTGTGGAAAAGTTT
1 AAAAGAATAGCCTTTGTGGCAAAGTCT
* *
30593784 AAAAGAATAGCCTTTGTGGCATATTAC-
1 AAAAGAATAGCCTTTGTGGCAAAGT-CT
* *
30593811 AAAAGACTAGCCTTTATGGCAAAGTCT
1 AAAAGAATAGCCTTTGTGGCAAAGTCT
30593838 AAAAGA
1 AAAAGA
30593844 TTGAGTTGTA
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.02
27 49 0.98
ACGTcount: A:0.41, C:0.13, G:0.20, T:0.26
Consensus pattern (27 bp):
AAAAGAATAGCCTTTGTGGCAAAGTCT
Found at i:30595397 original size:40 final size:39
Alignment explanation
Indices: 30595300--30595510 Score: 237
Period size: 40 Copynumber: 5.3 Consensus size: 39
30595290 TCTTCGGAAT
* * *
30595300 TTAG-CCGGATATAACCACAAGCACAATTGCCTTC-GGTC
1 TTAGCCCGGATAT-ATCACTAGCACAAATGCCTTCGGGTC
* * * *
30595338 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
*
30595378 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* * *
30595418 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
* * *
30595458 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
30595498 TTAGCCCGGATAT
1 TTAGCCCGGATAT
30595511 CATTCAAATG
Statistics
Matches: 155, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
38 5 0.03
39 23 0.15
40 123 0.79
41 4 0.03
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (39 bp):
TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTC
Found at i:30603882 original size:19 final size:19
Alignment explanation
Indices: 30603858--30603898 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
30603848 TTGATGATGG
*
30603858 AGAATGAATAATTGTTAAT
1 AGAATGAATAATTATTAAT
30603877 AGAATGAATAATTATTAAT
1 AGAATGAATAATTATTAAT
30603896 AGA
1 AGA
30603899 TTTTAATGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.51, C:0.00, G:0.15, T:0.34
Consensus pattern (19 bp):
AGAATGAATAATTATTAAT
Found at i:30612191 original size:47 final size:47
Alignment explanation
Indices: 30612138--30612267 Score: 183
Period size: 47 Copynumber: 2.8 Consensus size: 47
30612128 GTGCGAATAA
* * *
30612138 TACCTTGATTTGGCTACGGGCCATTGTATAGGTATTC-AGAGATGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCTAG-GATAAGT
*
30612185 TACCTTGATTTGGCT-CTGGGTCATGGTATAGGTACTCTAGGATAAGT
1 TACCTTGATTTGGCTAC-GGGCCATGGTATAGGTACTCTAGGATAAGT
*
30612232 TACCTTGATTTGGCTACGGGCTATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
30612268 TATCGATTGT
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
46 1 0.01
47 70 0.95
48 3 0.04
ACGTcount: A:0.22, C:0.15, G:0.28, T:0.35
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCTAGGATAAGT
Found at i:30614336 original size:22 final size:22
Alignment explanation
Indices: 30614292--30614341 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
30614282 GTGGTTTAAT
* *
30614292 GGTGGTGATATGTTAGTTTTTG
1 GGTGGTGATATGATAGTTGTTG
*
30614314 GGTGGTGATATGATGGTTGTTG
1 GGTGGTGATATGATAGTTGTTG
30614336 GGTGGT
1 GGTGGT
30614342 ATTTCGGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.12, C:0.00, G:0.44, T:0.44
Consensus pattern (22 bp):
GGTGGTGATATGATAGTTGTTG
Found at i:30617212 original size:46 final size:46
Alignment explanation
Indices: 30617144--30617272 Score: 136
Period size: 46 Copynumber: 2.8 Consensus size: 46
30617134 AAAACACACC
30617144 AACATATA--TGTGGACGAAGCCACCAAATTTGCAGACAAGCTACTAA
1 AACATATAGTTGTGGAC--AGCCACCAAATTTGCAGACAAGCTACTAA
* ** * *
30617190 TACATATAGTTGTGGACAGCCACCAAATTCACAAACAAGCTGCTAA
1 AACATATAGTTGTGGACAGCCACCAAATTTGCAGACAAGCTACTAA
* * *
30617236 AACATGTAGGTTGTGGATAAACCACCAAATTTGCAGA
1 AACATATA-GTTGTGGA-CAGCCACCAAATTTGCAGA
30617273 TTATTACTAC
Statistics
Matches: 67, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
46 38 0.57
47 8 0.12
48 21 0.31
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.22
Consensus pattern (46 bp):
AACATATAGTTGTGGACAGCCACCAAATTTGCAGACAAGCTACTAA
Found at i:30618537 original size:41 final size:41
Alignment explanation
Indices: 30618491--30618572 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
30618481 AATAAAAAAA
* *
30618491 ATACTTAAAATTTATTCAATTGTTAGTTGAACCAATTTTTT
1 ATACTTAAAATTTATTCAATTGTTAATTAAACCAATTTTTT
30618532 ATACTTAAAATTTATTCAATTGTTAATTAAACCAATTTTTT
1 ATACTTAAAATTTATTCAATTGTTAATTAAACCAATTTTTT
30618573 GTCCACTTCA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.37, C:0.10, G:0.05, T:0.49
Consensus pattern (41 bp):
ATACTTAAAATTTATTCAATTGTTAATTAAACCAATTTTTT
Found at i:30618611 original size:17 final size:17
Alignment explanation
Indices: 30618589--30618625 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
30618579 TTCAATTGGT
30618589 CCATATTGATTCACAAG
1 CCATATTGATTCACAAG
30618606 CCATATTGATTCACAAG
1 CCATATTGATTCACAAG
30618623 CCA
1 CCA
30618626 ACTAATTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.35, C:0.27, G:0.11, T:0.27
Consensus pattern (17 bp):
CCATATTGATTCACAAG
Found at i:30619875 original size:25 final size:25
Alignment explanation
Indices: 30619847--30619898 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
30619837 TTCCCCATTG
*
30619847 AATTTCTTTCTATATACCCAAATAA
1 AATTCCTTTCTATATACCCAAATAA
30619872 AATTCCTTTCTATATACCCAAATAA
1 AATTCCTTTCTATATACCCAAATAA
30619897 AA
1 AA
30619899 AGGGTGTATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.42, C:0.21, G:0.00, T:0.37
Consensus pattern (25 bp):
AATTCCTTTCTATATACCCAAATAA
Found at i:30620655 original size:63 final size:63
Alignment explanation
Indices: 30620583--30620708 Score: 207
Period size: 63 Copynumber: 2.0 Consensus size: 63
30620573 CTTTCTACCA
* *
30620583 TAGTTTTGCTATGCTCTTCAGGAGACAAATTATCCATTTTTTCTTCTACCTCAATATCAGTGC
1 TAGTTTTGCTACGCTCTTCAAGAGACAAATTATCCATTTTTTCTTCTACCTCAATATCAGTGC
** *
30620646 TAGTTTTGCTACGCTCTTCAAGAGACAAATTATCCATTTTTTCTTCTAGTTCAATGTCAGTGC
1 TAGTTTTGCTACGCTCTTCAAGAGACAAATTATCCATTTTTTCTTCTACCTCAATATCAGTGC
30620709 CAGCAGACAG
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
63 58 1.00
ACGTcount: A:0.24, C:0.21, G:0.13, T:0.41
Consensus pattern (63 bp):
TAGTTTTGCTACGCTCTTCAAGAGACAAATTATCCATTTTTTCTTCTACCTCAATATCAGTGC
Found at i:30623329 original size:490 final size:491
Alignment explanation
Indices: 30622409--30623390 Score: 1804
Period size: 490 Copynumber: 2.0 Consensus size: 491
30622399 GGGAACAAAT
* *
30622409 ACCTTGCATTGTCACTTTCTTTTTTATTGATCATTTTGACTAAAGGATTGCAAGGTTATATTAAT
1 ACCTTGCATTGTCACTTTCTTTCTTATTGATCATTTTGACTAAAGAATTGCAAGGTTATATTAAT
*
30622474 GGTGATAAGTGGAAACCATTGATAAAAGATCCTACCTTTAATCAGTGAGACTTAGAGAACTCACT
66 GGTGATAAGTGGAAACCATTGATAAAAGATCCCACCTTTAATCAGTGAGACTTAGAGAACTCACT
30622539 TGTTATGGCACGGCTTATCAACTCTATGCAGCCCCAAATTTCCTGAGCATACGACATTGCAGAAA
131 TGTTATGGCACGGCTTATCAACTCTATGCAGCCCCAAATTTCCTGAGCATACGACATTGCAGAAA
* * *
30622604 AAACATGAAATGCAATCTTACCTACTCACAAACGAGAATGAAGTTTAGATCTTTGAATTTTGGGA
196 AAACATGAAATGCAATCTTACCAACTCACAAACGAGAATGAAGTTTACATCTTCGAATTTTGGGA
*
30622669 TAAGGTCCATAGCACAAAGCAAGGTGATGACAATTTCTCATTACTTTTCTTGAATTGAGTGGCTT
261 TAAAGTCCATAGCACAAAGCAAGGTGATGACAATTTCTCATTACTTTTCTTGAATTGAGTGGCTT
30622734 ATGACAGGAACTTGATTATTACCAAATGCAATCAAATTTCAAATTTTGGTTGAAAAGGAATGGGT
326 ATGACAGGAACTTGATTATTACCAAATGCAATCAAATTTCAAATTTTGGTTGAAAAGGAATGGGT
*
30622799 TTATGATTTTCTAATCAAGTTGAACAATGAGTATAATTAGATCAAGATTCAAGTTCTTGG-AAAA
391 TTATGATTTTCTAATCAAGTTGAACAATGAGTATAATTAGATCAAGATACAAGTTCTTGGAAAAA
*
30622863 ACCCCTTTCTCCTTCACTTGACCAAAGCATATTCCC
456 ACCCCTTTCTCCTTCACTCGACCAAAGCATATTCCC
*
30622899 ACCTTGCATTGTCACTTTCTTTCTTATTGATCATTTTGACTAGAGAATTGCAAGGTTATATTAAT
1 ACCTTGCATTGTCACTTTCTTTCTTATTGATCATTTTGACTAAAGAATTGCAAGGTTATATTAAT
30622964 GGTGATAAGTGGAAACCATTGATAAAAGATCCCACCTTTAATCAGTGAGACTTAGAGAACTCACT
66 GGTGATAAGTGGAAACCATTGATAAAAGATCCCACCTTTAATCAGTGAGACTTAGAGAACTCACT
*
30623029 TGTTATGGCACGGCTTATCAACTCTATGCAGCCCCAAATTTCCTGAGCATATGACATTGCAGAAA
131 TGTTATGGCACGGCTTATCAACTCTATGCAGCCCCAAATTTCCTGAGCATACGACATTGCAGAAA
*
30623094 AAACATGAAATGCAATCTTACCAACTCACGAACGAGAATGAAGTTTACATCTTCGAATTTTGGGA
196 AAACATGAAATGCAATCTTACCAACTCACAAACGAGAATGAAGTTTACATCTTCGAATTTTGGGA
30623159 TAAAGTCCATAGCACAAAGCAAGGTGATGACAATTTCTCATTACTTTTCTTGAATTGAGTGGCTT
261 TAAAGTCCATAGCACAAAGCAAGGTGATGACAATTTCTCATTACTTTTCTTGAATTGAGTGGCTT
*
30623224 ATGACAGGAACTTGATTATTACCAAATGCAATCAAATTTCAAATTTTGGTTGAAAAGGATTGGGT
326 ATGACAGGAACTTGATTATTACCAAATGCAATCAAATTTCAAATTTTGGTTGAAAAGGAATGGGT
30623289 TTATGATTTTCTAATCAAGTTGAACAATGAGTATAATTAGATCAAGATACAAGTTCTTGGAAAAA
391 TTATGATTTTCTAATCAAGTTGAACAATGAGTATAATTAGATCAAGATACAAGTTCTTGGAAAAA
* * * *
30623354 ACCCTTTTTTCCTTCTCTCGAGCAAAGCATATTCCC
456 ACCCCTTTCTCCTTCACTCGACCAAAGCATATTCCC
30623390 A
1 A
30623391 TGTCCAGCAA
Statistics
Matches: 474, Mismatches: 17, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
490 438 0.92
491 36 0.08
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (491 bp):
ACCTTGCATTGTCACTTTCTTTCTTATTGATCATTTTGACTAAAGAATTGCAAGGTTATATTAAT
GGTGATAAGTGGAAACCATTGATAAAAGATCCCACCTTTAATCAGTGAGACTTAGAGAACTCACT
TGTTATGGCACGGCTTATCAACTCTATGCAGCCCCAAATTTCCTGAGCATACGACATTGCAGAAA
AAACATGAAATGCAATCTTACCAACTCACAAACGAGAATGAAGTTTACATCTTCGAATTTTGGGA
TAAAGTCCATAGCACAAAGCAAGGTGATGACAATTTCTCATTACTTTTCTTGAATTGAGTGGCTT
ATGACAGGAACTTGATTATTACCAAATGCAATCAAATTTCAAATTTTGGTTGAAAAGGAATGGGT
TTATGATTTTCTAATCAAGTTGAACAATGAGTATAATTAGATCAAGATACAAGTTCTTGGAAAAA
ACCCCTTTCTCCTTCACTCGACCAAAGCATATTCCC
Found at i:30626941 original size:19 final size:19
Alignment explanation
Indices: 30626917--30626956 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
30626907 ACCACACAAA
30626917 TCAATAGAATTATCATCTT
1 TCAATAGAATTATCATCTT
30626936 TCAATAGAATTATCATCTT
1 TCAATAGAATTATCATCTT
30626955 TC
1 TC
30626957 TCTCAACATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.35, C:0.17, G:0.05, T:0.42
Consensus pattern (19 bp):
TCAATAGAATTATCATCTT
Found at i:30631048 original size:27 final size:27
Alignment explanation
Indices: 30630979--30631034 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
30630969 AAAATATATG
30630979 ATTAGAAATTAATTAATAATATTTAAA
1 ATTAGAAATTAATTAATAATATTTAAA
30631006 ATTAGAAATTAATTAATAATATTTAAA
1 ATTAGAAATTAATTAATAATATTTAAA
30631033 AT
1 AT
30631035 ATATTTAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (27 bp):
ATTAGAAATTAATTAATAATATTTAAA
Found at i:30634664 original size:27 final size:27
Alignment explanation
Indices: 30634634--30634687 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
30634624 TGTCATGTGA
* *
30634634 AATTGAATGGAAAATTATTGTTACATG
1 AATTGAATGGAAAATTACTATTACATG
**
30634661 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGAAAATTACTATTACATG
30634688 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.41, C:0.06, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGAAAATTACTATTACATG
Found at i:30642622 original size:40 final size:40
Alignment explanation
Indices: 30642578--30642765 Score: 290
Period size: 40 Copynumber: 4.7 Consensus size: 40
30642568 GCTACTTGCT
30642578 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
30642618 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
30642658 CAAATGCCTTCGAGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
30642698 CAAATGCCTTCGGG-CTTAGCCCAG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
30642737 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
30642766 CATCCAAATA
Statistics
Matches: 134, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
38 1 0.01
39 32 0.24
40 100 0.75
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:30643671 original size:13 final size:13
Alignment explanation
Indices: 30643653--30643677 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
30643643 TAATGTCTAA
30643653 CTAAAAAAAAATG
1 CTAAAAAAAAATG
30643666 CTAAAAAAAAAT
1 CTAAAAAAAAAT
30643678 AAAATCCAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.08, G:0.04, T:0.16
Consensus pattern (13 bp):
CTAAAAAAAAATG
Found at i:30645345 original size:123 final size:123
Alignment explanation
Indices: 30645126--30645373 Score: 451
Period size: 123 Copynumber: 2.0 Consensus size: 123
30645116 TTCTCAATCT
* *
30645126 AGCCATAACGTCTAGACTGGGTTTGGGAGGTTACAACTCTGGGCTCTACTCAACATCAAAATCAA
1 AGCCATAACGTCTAGACCGGGTTTGAGAGGTTACAACTCTGGGCTCTACTCAACATCAAAATCAA
30645191 GATTATTCTAATCTCTTTTCTCTTTCAATTCAATCGTGTTCTTTACATGTTTTATTCA
66 GATTATTCTAATCTCTTTTCTCTTTCAATTCAATCGTGTTCTTTACATGTTTTATTCA
* **
30645249 AGCCATAACGTCTAGACCGGGTTTGAGAGGTTCCAACTCTGGGCTCTACTCGCCATCAAAATCAA
1 AGCCATAACGTCTAGACCGGGTTTGAGAGGTTACAACTCTGGGCTCTACTCAACATCAAAATCAA
30645314 GATTATTCTAATCTCTTTTCTCTTTCAATTCAATCGTGTTCTTTACATGTTTTATTCA
66 GATTATTCTAATCTCTTTTCTCTTTCAATTCAATCGTGTTCTTTACATGTTTTATTCA
30645372 AG
1 AG
30645374 TGAGATTTCA
Statistics
Matches: 120, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 120 1.00
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (123 bp):
AGCCATAACGTCTAGACCGGGTTTGAGAGGTTACAACTCTGGGCTCTACTCAACATCAAAATCAA
GATTATTCTAATCTCTTTTCTCTTTCAATTCAATCGTGTTCTTTACATGTTTTATTCA
Found at i:30648336 original size:27 final size:27
Alignment explanation
Indices: 30648306--30648385 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 27
30648296 CAAAATACAT
* **
30648306 CACAAAGGCGATCCATACAGAGTATGC
1 CACAAAGGCCATAAATACAGAGTATGC
30648333 CACAAAGGCCATAAATACAGAGTATGC
1 CACAAAGGCCATAAATACAGAGTATGC
* * *
30648360 CACACAGGCTATATATACAGAGTATG
1 CACAAAGGCCATAAATACAGAGTATG
30648386 TCTGTAACAC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.40, C:0.23, G:0.20, T:0.17
Consensus pattern (27 bp):
CACAAAGGCCATAAATACAGAGTATGC
Found at i:30649529 original size:110 final size:110
Alignment explanation
Indices: 30649384--30649777 Score: 479
Period size: 110 Copynumber: 3.6 Consensus size: 110
30649374 CATGATGTTG
* ** * * * **
30649384 CTCACACAAGCTGCAGAGAATCTGCAACATGTGTAGGATCTTAAGCTATCATTACGGTTTGTATC
1 CTCACACAAGCTGCAGAGAATCCGCAACACATGCAGGATCTCAAGCCATCGCTACGGTTTGTATC
* * * * *
30649449 AGCGA-TACATAGTAGC-TACTAAATAATCATTGGTTCAC-AGTGCTG
66 A-CTAGTACATAGTA-CTTGCTAAATAATCACTGGCTCACGA-TGCTA
* * * * *
30649494 CTCACACAAGCTGTAGAGAATCCGCAACACATGTAGGATCTCAAGCTATCTCTACAGTTTGTATC
1 CTCACACAAGCTGCAGAGAATCCGCAACACATGCAGGATCTCAAGCCATCGCTACGGTTTGTATC
* *
30649559 ACTAGTATATAGTACTTGCTAAATAATCACTGGCTCATGATGCTA
66 ACTAGTACATAGTACTTGCTAAATAATCACTGGCTCACGATGCTA
* * * * * * *
30649604 CTCACACAAGCTGTAGAGATTCTGCAACACATGCAAGATCTTAAGCCATTGCTACGGTTTATATC
1 CTCACACAAGCTGCAGAGAATCCGCAACACATGCAGGATCTCAAGCCATCGCTACGGTTTGTATC
*
30649669 ACTAGTACATAGTACTTGCTAAATAATCACGGGCTCACGATGCTA
66 ACTAGTACATAGTACTTGCTAAATAATCACTGGCTCACGATGCTA
*
30649714 CTCACACAAGCTGCAAAGAATCCGCAACACATGCAGGATCTCAAGCCATCGCTACGGTTTGTAT
1 CTCACACAAGCTGCAGAGAATCCGCAACACATGCAGGATCTCAAGCCATCGCTACGGTTTGTAT
30649778 TACCGACTCA
Statistics
Matches: 245, Mismatches: 36, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
109 3 0.01
110 241 0.98
111 1 0.00
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.27
Consensus pattern (110 bp):
CTCACACAAGCTGCAGAGAATCCGCAACACATGCAGGATCTCAAGCCATCGCTACGGTTTGTATC
ACTAGTACATAGTACTTGCTAAATAATCACTGGCTCACGATGCTA
Found at i:30649720 original size:220 final size:220
Alignment explanation
Indices: 30649371--30649777 Score: 541
Period size: 220 Copynumber: 1.9 Consensus size: 220
30649361 TTTCTAACTT
* * ** * * * *
30649371 GCTCATGATGTTGCTCACACAAGCTGCAGAGAATCTGCAACATGTGTAGGATCTTAAGCTATCAT
1 GCTCATGATGCTACTCACACAAGCTGCAGAGAATCTGCAACACATGCAAGATCTTAAGCCATCAC
* ** * *
30649436 TACGGTTTGTATCAGCGATACATAGTAGCTACTAAATAATCATTGGTTCACAGTGCTGCTCACAC
66 TACGGTTTATATCAGCGATACATAGTAGCTACTAAATAATCACGGGCTCACAGTGCTACTCACAC
* * * * *
30649501 AAGCTGTAGAGAATCCGCAACACATGTAGGATCTCAAGCTATCTCTACAGTTTGTATCACTAGTA
131 AAGCTGCAAAGAATCCGCAACACATGCAGGATCTCAAGCCATCGCTACAGTTTGTATCACTAGTA
30649566 TATAGTACTTGCTAAATAATCACTG
196 TATAGTACTTGCTAAATAATCACTG
* * **
30649591 GCTCATGATGCTACTCACACAAGCTGTAGAGATTCTGCAACACATGCAAGATCTTAAGCCATTGC
1 GCTCATGATGCTACTCACACAAGCTGCAGAGAATCTGCAACACATGCAAGATCTTAAGCCATCAC
* *
30649656 TACGGTTTATATCA-CTAGTACATAGTA-CTTGCTAAATAATCACGGGCTCAC-GATGCTACTCA
66 TACGGTTTATATCAGCGA-TACATAGTAGC-TACTAAATAATCACGGGCTCACAG-TGCTACTCA
*
30649718 CACAAGCTGCAAAGAATCCGCAACACATGCAGGATCTCAAGCCATCGCTACGGTTTGTAT
128 CACAAGCTGCAAAGAATCCGCAACACATGCAGGATCTCAAGCCATCGCTACAGTTTGTAT
30649778 TACCGACTCA
Statistics
Matches: 159, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
219 4 0.03
220 155 0.97
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (220 bp):
GCTCATGATGCTACTCACACAAGCTGCAGAGAATCTGCAACACATGCAAGATCTTAAGCCATCAC
TACGGTTTATATCAGCGATACATAGTAGCTACTAAATAATCACGGGCTCACAGTGCTACTCACAC
AAGCTGCAAAGAATCCGCAACACATGCAGGATCTCAAGCCATCGCTACAGTTTGTATCACTAGTA
TATAGTACTTGCTAAATAATCACTG
Found at i:30657625 original size:28 final size:28
Alignment explanation
Indices: 30657574--30657629 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
30657564 GACTTTGGTG
*
30657574 ACCTTTCTATTTTTCTGACATCTTCCAT
1 ACCTTTCTATTTTTCTAACATCTTCCAT
**
30657602 ACCTTTCTATTTTTCTAATGTCTTCCAT
1 ACCTTTCTATTTTTCTAACATCTTCCAT
30657630 TCTCTTTAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.18, C:0.27, G:0.04, T:0.52
Consensus pattern (28 bp):
ACCTTTCTATTTTTCTAACATCTTCCAT
Found at i:30666221 original size:24 final size:23
Alignment explanation
Indices: 30666129--30666256 Score: 107
Period size: 23 Copynumber: 5.5 Consensus size: 23
30666119 ATAGCTCGTA
* * *
30666129 AGAGCTTACTATTTCAGCTCATT
1 AGAGCTTACTGTTTTAGCTCAAT
* ** * *
30666152 GGAGCTTACTAATTCAGCTCAAA
1 AGAGCTTACTGTTTTAGCTCAAT
*
30666175 AGAGCTGACTG-TTTAGCTCAAT
1 AGAGCTTACTGTTTTAGCTCAAT
*
30666197 AGAGCTTACCGTTTTCAGCTCAAT
1 AGAGCTTACTGTTTT-AGCTCAAT
*
30666221 AAAGCTTACTGTTATTAGCTC-AT
1 AGAGCTTACTGTT-TTAGCTCAAT
30666244 GAAGAGCTTACTG
1 --AGAGCTTACTG
30666257 ACCATGTTTT
Statistics
Matches: 86, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
22 18 0.21
23 32 0.37
24 24 0.28
25 12 0.14
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (23 bp):
AGAGCTTACTGTTTTAGCTCAAT
Found at i:30673736 original size:23 final size:23
Alignment explanation
Indices: 30673710--30673829 Score: 77
Period size: 23 Copynumber: 5.2 Consensus size: 23
30673700 GACTCACCAT
*
30673710 AGCTTGTAAGAGCTTACTGTTTC
1 AGCTTGAAAGAGCTTACTGTTTC
* ** *
30673733 AGC-TCATTGGAGCTTACTGGTTC
1 AGCTTGA-AAGAGCTTACTGTTTC
* *
30673756 ATCTTGAAAGAGCTTATTG-TTC
1 AGCTTGAAAGAGCTTACTGTTTC
* *
30673778 AGCTT-AACAGAGCTTACAGTTTTT
1 AGCTTGAA-AGAGCTTACTG-TTTC
*
30673802 AGC-TCAATAGAGCTTACTGTTATC
1 AGCTTGAA-AGAGCTTACTGTT-TC
30673826 AGCT
1 AGCT
30673830 CATGAAGAGC
Statistics
Matches: 72, Mismatches: 17, Indels: 14
0.70 0.17 0.14
Matches are distributed among these distances:
21 2 0.03
22 17 0.24
23 30 0.42
24 23 0.32
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (23 bp):
AGCTTGAAAGAGCTTACTGTTTC
Found at i:30673829 original size:24 final size:23
Alignment explanation
Indices: 30673718--30673831 Score: 97
Period size: 24 Copynumber: 4.9 Consensus size: 23
30673708 ATAGCTTGTA
*
30673718 AGAGCTTACTGTTTCAGCTCATT
1 AGAGCTTACTGTTTCAGCTCAAT
* * * *
30673741 GGAGCTTACTGGTTCATCTTGAA-
1 AGAGCTTACTGTTTCAGC-TCAAT
* * *
30673764 AGAGCTTATTG-TTCAGCTTAAC
1 AGAGCTTACTGTTTCAGCTCAAT
* *
30673786 AGAGCTTACAGTTTTTAGCTCAAT
1 AGAGCTTACTG-TTTCAGCTCAAT
30673810 AGAGCTTACTGTTATCAGCTCA
1 AGAGCTTACTGTT-TCAGCTCA
30673832 TGAAGAGCTA
Statistics
Matches: 70, Mismatches: 16, Indels: 9
0.74 0.17 0.09
Matches are distributed among these distances:
21 3 0.04
22 14 0.20
23 26 0.37
24 27 0.39
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.36
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGCTCAAT
Found at i:30686108 original size:43 final size:43
Alignment explanation
Indices: 30686042--30686126 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
30686032 AAATCATACA
*
30686042 ATGCCAACGTCCCAGACGTGGTCTTACAT-GTAACCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTAC-TCGTAAACACATATCG
30686085 ATGCC-ACTGTCCCAGACAG-GGTCTTACTCGTAAACACATATC
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACTCGTAAACACATATC
30686127 AGAATCACAT
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
42 3 0.08
43 34 0.89
44 1 0.03
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACTCGTAAACACATATCG
Found at i:30687313 original size:43 final size:43
Alignment explanation
Indices: 30687233--30687318 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 43
30687223 GATATATGAG
* * * * *
30687233 GCATCCGAGCTCGTTAAGTGATCCGTGTTCATTATGGATGCGA
1 GCATCCGAGCTCATTAAGTGATCCGAGCTCATAATGGACGCGA
* * *
30687276 GCATCTGAGCTCATTGAGTGGTCCGAGCTCATAATGGACGCGA
1 GCATCCGAGCTCATTAAGTGATCCGAGCTCATAATGGACGCGA
30687319 TACATGTAAC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (43 bp):
GCATCCGAGCTCATTAAGTGATCCGAGCTCATAATGGACGCGA
Found at i:30693196 original size:43 final size:44
Alignment explanation
Indices: 30693148--30693257 Score: 136
Period size: 44 Copynumber: 2.5 Consensus size: 44
30693138 AAGGTAAATC
*
30693148 CAACAACCC-ATGTTTATCTTC-TCTTATTTTTAAATTC-TTTTTT
1 CAACAACCCAATATTT-TCTTCTTC-TATTTTTAAATTCATTTTTT
* *
30693191 CAACAACCCAATATTTTCTTCTTCTCTTTTTACATTCATTTTTT
1 CAACAACCCAATATTTTCTTCTTCTATTTTTAAATTCATTTTTT
* *
30693235 CAACAACCGAATATTATCTTCTT
1 CAACAACCCAATATTTTCTTCTT
30693258 TTAAAATTAT
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
43 25 0.42
44 34 0.58
ACGTcount: A:0.25, C:0.24, G:0.02, T:0.49
Consensus pattern (44 bp):
CAACAACCCAATATTTTCTTCTTCTATTTTTAAATTCATTTTTT
Found at i:30693772 original size:27 final size:27
Alignment explanation
Indices: 30693688--30693792 Score: 95
Period size: 27 Copynumber: 3.9 Consensus size: 27
30693678 CCATATTTCA
** *
30693688 CCACAAA-GCTTCCTTTATTTAGATTG
1 CCACAAAGGCTTCCTTTACATAGATAG
** * * *
30693714 TTACAAGGGCTTCCTTTACATGGTTAG
1 CCACAAAGGCTTCCTTTACATAGATAG
*
30693741 ACACAAAGGCTTCCTTTACATAGATAG
1 CCACAAAGGCTTCCTTTACATAGATAG
* * *
30693768 CCACAAAGGCTCCCATTACAGAGAT
1 CCACAAAGGCTTCCTTTACATAGAT
30693793 TGCCCCAAGG
Statistics
Matches: 61, Mismatches: 17, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
26 4 0.07
27 57 0.93
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (27 bp):
CCACAAAGGCTTCCTTTACATAGATAG
Found at i:30696980 original size:11 final size:11
Alignment explanation
Indices: 30696964--30696989 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
30696954 ACACAATAAT
30696964 CATACATTTCA
1 CATACATTTCA
30696975 CATACATTTCA
1 CATACATTTCA
30696986 CATA
1 CATA
30696990 TTCATATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.27, G:0.00, T:0.35
Consensus pattern (11 bp):
CATACATTTCA
Found at i:30700333 original size:29 final size:29
Alignment explanation
Indices: 30700297--30700397 Score: 116
Period size: 29 Copynumber: 3.5 Consensus size: 29
30700287 GAATGTGATC
*
30700297 GGGCCTAACGGGCCATATAAATATGATTT
1 GGGCCTAATGGGCCATATAAATATGATTT
* **
30700326 GGGCCTAATGGGCCATATATAGGTGATTT
1 GGGCCTAATGGGCCATATAAATATGATTT
* *
30700355 GGGCCAAATGGGCCA-AAAGAATATGA-TT
1 GGGCCTAATGGGCCATATA-AATATGATTT
*
30700383 GGGCTTAATGGGCCA
1 GGGCCTAATGGGCCA
30700398 GGTACAGGTA
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
28 17 0.28
29 43 0.72
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.25
Consensus pattern (29 bp):
GGGCCTAATGGGCCATATAAATATGATTT
Found at i:30704096 original size:40 final size:40
Alignment explanation
Indices: 30704041--30704263 Score: 374
Period size: 40 Copynumber: 5.6 Consensus size: 40
30704031 ATTTGAATAC
30704041 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
30704081 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
30704121 ATACGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
30704161 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
30704201 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
30704241 ACCCGGGTTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCA
30704264 ATTGAGCTTG
Statistics
Matches: 172, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 172 1.00
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:30704282 original size:120 final size:120
Alignment explanation
Indices: 30704041--30704290 Score: 385
Period size: 120 Copynumber: 2.1 Consensus size: 120
30704031 ATTTGAATAC
*
30704041 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
* * * * *
30704106 TGTGCGAGTTGATATATACGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
66 CGTGCGAGTTGATATACACGGGCTAAGACCCGAAGGCAATTGAGCAAGTGGATAT
30704161 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
* * * ** *
30704226 CGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGAGCTTGTGGTTAT
66 CGTGCGAGTTGATATACACGGGCTAAGACCCGAAGGCAATTGAGCAAGTGGATAT
30704281 ATCC-GGCTAA
1 ATCCGGGCTAA
30704291 ATTCCAAAGA
Statistics
Matches: 118, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
119 6 0.05
120 112 0.95
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (120 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
CGTGCGAGTTGATATACACGGGCTAAGACCCGAAGGCAATTGAGCAAGTGGATAT
Found at i:30710192 original size:47 final size:47
Alignment explanation
Indices: 30710138--30710331 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
30710128 TTAGGATTTT
** * *
30710138 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
30710185 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
30710232 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
30710279 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
30710326 ATGTGA
1 ATGTGA
30710332 AATATGTATG
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:30710238 original size:22 final size:22
Alignment explanation
Indices: 30710167--30710238 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
30710157 GTATATATGA
30710167 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
30710189 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
30710214 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
30710236 GAT
1 GAT
30710239 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:30710287 original size:25 final size:25
Alignment explanation
Indices: 30710212--30710287 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
30710202 ATGCATATAT
30710212 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
30710237 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
30710259 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
30710284 GTGA
1 GTGA
30710288 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:30710364 original size:48 final size:48
Alignment explanation
Indices: 30710301--30710435 Score: 252
Period size: 48 Copynumber: 2.8 Consensus size: 48
30710291 TGAACATGCA
30710301 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
30710349 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
30710397 CATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
30710436 GGCGATGTGC
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 85 1.00
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:30710484 original size:96 final size:95
Alignment explanation
Indices: 30710302--30710475 Score: 228
Period size: 96 Copynumber: 1.8 Consensus size: 95
30710292 GAACATGCAT
*
30710302 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGATATGTATATGTGGT-AAGCCGA
* * *
30710367 ATGGCTAATGTGAAATATGTATGAGATATGC
65 ACGACCAATGTGAAATATGTATGAGATATGC
* * * *
30710398 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGCGATGTGCGTATAT-T-GT-GGCCG
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGATAT--GTATATGTGGTAAGCCG
30710460 AACGACCAATGTGAAA
64 AACGACCAATGTGAAA
30710476 GGTGTGTATT
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
94 17 0.25
96 44 0.65
97 1 0.01
98 6 0.09
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (95 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGATATGTATATGTGGTAAGCCGAA
CGACCAATGTGAAATATGTATGAGATATGC
Found at i:30710689 original size:37 final size:37
Alignment explanation
Indices: 30710581--30710689 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
30710571 GGAAATATAT
*
30710581 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
30710618 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
30710655 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
30710690 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:30712318 original size:40 final size:40
Alignment explanation
Indices: 30711957--30712306 Score: 605
Period size: 40 Copynumber: 8.8 Consensus size: 40
30711947 GAGAATTGAG
30711957 AGTGATATATCC-GGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
30711996 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
30712036 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
30712076 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
30712116 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
30712156 AGTGATATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
30712195 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
30712235 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
30712275 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
30712307 ATCATGCTGG
Statistics
Matches: 296, Mismatches: 13, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
39 49 0.17
40 247 0.83
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:30716390 original size:47 final size:47
Alignment explanation
Indices: 30716336--30716529 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
30716326 TTAGGATTTT
** * *
30716336 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
30716383 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
30716430 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
30716477 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
30716524 ATGTGA
1 ATGTGA
30716530 AATATGTATG
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:30716436 original size:22 final size:22
Alignment explanation
Indices: 30716365--30716436 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
30716355 GTATATATGA
30716365 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
30716387 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
30716412 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
30716434 GAT
1 GAT
30716437 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:30716485 original size:25 final size:25
Alignment explanation
Indices: 30716410--30716485 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
30716400 ATGCATATAT
30716410 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
30716435 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
30716457 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
30716482 GTGA
1 GTGA
30716486 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:30716562 original size:48 final size:48
Alignment explanation
Indices: 30716499--30716633 Score: 252
Period size: 48 Copynumber: 2.8 Consensus size: 48
30716489 TGAACATGCA
30716499 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
30716547 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
30716595 CATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
30716634 GGCGATGTGC
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 85 1.00
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:30716682 original size:96 final size:95
Alignment explanation
Indices: 30716500--30716673 Score: 228
Period size: 96 Copynumber: 1.8 Consensus size: 95
30716490 GAACATGCAT
*
30716500 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGATATGTATATGTGGT-AAGCCGA
* * *
30716565 ATGGCTAATGTGAAATATGTATGAGATATGC
65 ACGACCAATGTGAAATATGTATGAGATATGC
* * * *
30716596 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGCGATGTGCGTATAT-T-GT-GGCCG
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGATAT--GTATATGTGGTAAGCCG
30716658 AACGACCAATGTGAAA
64 AACGACCAATGTGAAA
30716674 GGTGTGTATT
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
94 17 0.25
96 44 0.65
97 1 0.01
98 6 0.09
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (95 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGATATGTATATGTGGTAAGCCGAA
CGACCAATGTGAAATATGTATGAGATATGC
Found at i:30716887 original size:37 final size:37
Alignment explanation
Indices: 30716779--30716887 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
30716769 GGAAATATAT
*
30716779 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
30716816 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
30716853 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
30716888 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:30718225 original size:91 final size:91
Alignment explanation
Indices: 30718070--30718251 Score: 364
Period size: 91 Copynumber: 2.0 Consensus size: 91
30718060 GCGGAAAAGC
30718070 ATTTAAAATACAATTACAGCAATGCTTATTACATACGAACTTACCTCGGATGCAAAAACGGCGAA
1 ATTTAAAATACAATTACAGCAATGCTTATTACATACGAACTTACCTCGGATGCAAAAACGGCGAA
30718135 TTAAGTCGATTAATCTGATACTTTGT
66 TTAAGTCGATTAATCTGATACTTTGT
30718161 ATTTAAAATACAATTACAGCAATGCTTATTACATACGAACTTACCTCGGATGCAAAAACGGCGAA
1 ATTTAAAATACAATTACAGCAATGCTTATTACATACGAACTTACCTCGGATGCAAAAACGGCGAA
30718226 TTAAGTCGATTAATCTGATACTTTGT
66 TTAAGTCGATTAATCTGATACTTTGT
30718252 TCTTTCCCTG
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 91 1.00
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (91 bp):
ATTTAAAATACAATTACAGCAATGCTTATTACATACGAACTTACCTCGGATGCAAAAACGGCGAA
TTAAGTCGATTAATCTGATACTTTGT
Found at i:30719746 original size:49 final size:50
Alignment explanation
Indices: 30719689--30719797 Score: 127
Period size: 49 Copynumber: 2.2 Consensus size: 50
30719679 GAAAGTTTCA
* *
30719689 TAAA-GCATGCAATAATT-AAA-TCATGAACTTCATTAACATATGAGTTA-T
1 TAAATGCATGAAATAATTAAAACTCA--AACTTCATTAACATATGAGATACT
* *
30719737 TAAATGCATGAAATAATTAAAACTCAAACTTTATTAACATGTGAGATACT
1 TAAATGCATGAAATAATTAAAACTCAAACTTCATTAACATATGAGATACT
*
30719787 TTAATGCATGA
1 TAAATGCATGA
30719798 CTAAATTAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
48 4 0.08
49 31 0.60
50 14 0.27
51 3 0.06
ACGTcount: A:0.44, C:0.12, G:0.11, T:0.33
Consensus pattern (50 bp):
TAAATGCATGAAATAATTAAAACTCAAACTTCATTAACATATGAGATACT
Found at i:30726900 original size:13 final size:13
Alignment explanation
Indices: 30726882--30726907 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
30726872 AAGTAATCGT
30726882 ACACGGGCGTGTC
1 ACACGGGCGTGTC
30726895 ACACGGGCGTGTC
1 ACACGGGCGTGTC
30726908 CTTACCGAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:30743702 original size:37 final size:37
Alignment explanation
Indices: 30743643--30743751 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
30743633 AGCTCAGACG
* *
30743643 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
30743680 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
30743717 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
30743752 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:30743982 original size:47 final size:47
Alignment explanation
Indices: 30743929--30744050 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
30743919 TCAGCTTTAC
* * *
30743929 CACATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCA
1 CACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCA
30743976 CACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCA
1 CACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCA
*
30744023 CATATATGCATGCTCACATTCATCACAT
1 CACATATGCATGCTCACATTCATCACAT
30744051 AAAATCCTAA
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.31
Consensus pattern (47 bp):
CACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCA
Found at i:30747972 original size:40 final size:40
Alignment explanation
Indices: 30747893--30748297 Score: 544
Period size: 40 Copynumber: 10.1 Consensus size: 40
30747883 CGAATACACG
* * * * * *
30747893 TCACTAGCATGATTCCTCTTCAGGACCTAGCCC-GAATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCAG-ATACA
* * ** * *
30747933 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACAGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCAGATACA
* *
30747973 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCAGATACA
* *
30748013 TCACTAGCACGAATGCTCTTTGGGACTTAGTCCAGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCAGATACA
* *
30748053 TCACTAGCACGAATGCTCTTCAGGACTTAGCCCAGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCAGATACA
* *
30748093 TCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCAGATACA
*
30748133 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCAGATACA
30748173 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCAGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCAGATACA
* * *
30748213 TCACTAGCACGAATGGTCTTCGAGACTTAGCCC-GAATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCAG-ATACA
* *
30748253 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCAGATACA
30748293 TCACT
1 TCACT
30748298 CTAAATTCTC
Statistics
Matches: 325, Mismatches: 37, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
39 1 0.00
40 322 0.99
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
TCACTAGCACGAATGCTCTTCGGGACTTAGCCCAGATACA
Found at i:30749625 original size:37 final size:37
Alignment explanation
Indices: 30749566--30749674 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
30749556 AGCTCAGACG
* *
30749566 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
30749603 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
30749640 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
30749675 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:30749920 original size:47 final size:47
Alignment explanation
Indices: 30749837--30749973 Score: 206
Period size: 47 Copynumber: 3.0 Consensus size: 47
30749827 TTTCACACTA
* * * * *
30749837 GCCATTCGGCTTTA-C-CACAAATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
30749882 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
*
30749929 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACAT
1 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACAT
30749974 AAAATCCTAA
Statistics
Matches: 84, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
45 13 0.15
46 1 0.01
47 70 0.83
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.31
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
Found at i:30756091 original size:47 final size:47
Alignment explanation
Indices: 30756017--30756142 Score: 216
Period size: 47 Copynumber: 2.7 Consensus size: 47
30756007 TCATTCGATA
* * *
30756017 AGTACCTATACCATGGCTCGTAACCAAATCAAGGTAACTTATCCTGG
1 AGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCCCGG
30756064 AGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCCCGG
1 AGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCCCGG
*
30756111 AGTACCTATACCATAGCCCGTAGCCAAATCAA
1 AGTACCTATACCATGGCCCGTAGCCAAATCAA
30756143 TGTATCATTC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 75 1.00
ACGTcount: A:0.33, C:0.29, G:0.17, T:0.22
Consensus pattern (47 bp):
AGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCCCGG
Found at i:30757629 original size:34 final size:34
Alignment explanation
Indices: 30757586--30757651 Score: 116
Period size: 34 Copynumber: 1.9 Consensus size: 34
30757576 TTAGCCCCTT
30757586 TTTCAGTAATAGTCG-CAGTCTGGGCCTGAGCCCA
1 TTTCAGTAATAGT-GACAGTCTGGGCCTGAGCCCA
30757620 TTTCAGTAATAGTGACAGTCTGGGCCTGAGCC
1 TTTCAGTAATAGTGACAGTCTGGGCCTGAGCC
30757652 TTTTCCAGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
33 1 0.03
34 30 0.97
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.27
Consensus pattern (34 bp):
TTTCAGTAATAGTGACAGTCTGGGCCTGAGCCCA
Found at i:30757661 original size:34 final size:34
Alignment explanation
Indices: 30757571--30757661 Score: 114
Period size: 34 Copynumber: 2.6 Consensus size: 34
30757561 CTTCAGTTAG
*
30757571 GGGCCTTAGCCCCTTTTTCAGTAATAGTCGCAGTCT
1 GGGCCTGAG-CCC-TTTTCAGTAATAGTCGCAGTCT
*
30757607 GGGCCTGAGCCCATTTCAGTAATAGT-GACAGTCT
1 GGGCCTGAGCCCTTTTCAGTAATAGTCG-CAGTCT
30757641 GGGCCTGAG-CCTTTTCCAGTA
1 GGGCCTGAGCCCTTTT-CAGTA
30757662 CAGTATGCAA
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
33 6 0.12
34 33 0.66
35 3 0.06
36 8 0.16
ACGTcount: A:0.19, C:0.26, G:0.25, T:0.30
Consensus pattern (34 bp):
GGGCCTGAGCCCTTTTCAGTAATAGTCGCAGTCT
Found at i:30769071 original size:23 final size:22
Alignment explanation
Indices: 30769031--30769075 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
30769021 CAATCATATA
* *
30769031 CAAACTAATTCAAGCATTATAAC
1 CAAACTAACTCAACCATT-TAAC
*
30769054 CAAACTAACTCTACCATTTAAC
1 CAAACTAACTCAACCATTTAAC
30769076 ATGACGTATC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.44, C:0.27, G:0.02, T:0.27
Consensus pattern (22 bp):
CAAACTAACTCAACCATTTAAC
Found at i:30771794 original size:94 final size:90
Alignment explanation
Indices: 30771634--30771845 Score: 241
Period size: 94 Copynumber: 2.3 Consensus size: 90
30771624 GTGCCAATGC
* * * *
30771634 CATGTCCCAGACACAGTCTTACACTGGCACATCTCGTAGCTGATGCATGTCCCAGACATGTCTTA
1 CATGTCCCAGACA-TGTCTTACACTAGCACATCTCATAGCTGATGCATGTCCCAAACATGTCTTA
* * *
30771699 CACTAGCT-T-ATATCTCGAGGTCGATG
65 CACTAGCTCTCATA-AT-GAGGCCGATA
**
30771725 CATGTCTTAGACATGTCTTACACTAGCACTCATCTCAATA-CTGATGCCATGTCCCAAACATGGT
1 CATGTCCCAGACATGTCTTACACTAGCA--CATCTC-ATAGCTGATG-CATGTCCCAAACAT-GT
*
30771789 CTTACACTAGCTCTCATAATGTGGCCGATA
61 CTTACACTAGCTCTCATAATGAGGCCGATA
30771819 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
30771846 TAACACAAGT
Statistics
Matches: 102, Mismatches: 12, Indels: 11
0.82 0.10 0.09
Matches are distributed among these distances:
90 13 0.13
91 11 0.11
92 12 0.12
93 15 0.15
94 46 0.45
95 2 0.02
96 3 0.03
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (90 bp):
CATGTCCCAGACATGTCTTACACTAGCACATCTCATAGCTGATGCATGTCCCAAACATGTCTTAC
ACTAGCTCTCATAATGAGGCCGATA
Found at i:30771797 original size:48 final size:45
Alignment explanation
Indices: 30771634--30771845 Score: 177
Period size: 46 Copynumber: 4.6 Consensus size: 45
30771624 GTGCCAATGC
* *
30771634 CATGTCCCAGACACAGTCTTACACTGGCA-CATCTC-GTAGCTGATG
1 CATGTCCCAGACA-TGTCTTACACTAGCATCATCTCAGTA-CTGATG
30771679 CATGTCCCAGACATGTCTTACACTAGCTTAT-ATCTCGAGGT-C-GATG
1 CATGTCCCAGACATGTCTTACACTAGC--ATCATCTC-A-GTACTGATG
** *
30771725 CATGTCTTAGACATGTCTTACACTAGCACTCATCTCAATACTGATG
1 CATGTCCCAGACATGTCTTACACTAGCA-TCATCTCAGTACTGATG
* * * * *
30771771 CCATGTCCCAAACATGGTCTTACACTAGC-TC-TCATAATGTGGCCGATA
1 -CATGTCCCAGACAT-GTCTTACACTAGCATCATC-TCA-GT-ACTGATG
30771819 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
30771846 TAACACAAGT
Statistics
Matches: 138, Mismatches: 14, Indels: 29
0.76 0.08 0.16
Matches are distributed among these distances:
44 14 0.10
45 18 0.13
46 61 0.44
47 26 0.19
48 17 0.12
49 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCATCATCTCAGTACTGATG
Found at i:30791681 original size:20 final size:20
Alignment explanation
Indices: 30791656--30791695 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
30791646 CCTATAACAT
30791656 TGGTGAATCTTATTATGGTA
1 TGGTGAATCTTATTATGGTA
*
30791676 TGGTGAATCTTATTGTGGTA
1 TGGTGAATCTTATTATGGTA
30791696 AAGCGTTGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.23, C:0.05, G:0.28, T:0.45
Consensus pattern (20 bp):
TGGTGAATCTTATTATGGTA
Found at i:30810832 original size:15 final size:15
Alignment explanation
Indices: 30810806--30810840 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
30810796 TGCATTAGGG
30810806 ATCATTGCATTTAGT
1 ATCATTGCATTTAGT
30810821 ATCATTGCATTTAGT
1 ATCATTGCATTTAGT
*
30810836 TTCAT
1 ATCAT
30810841 ATACTTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.26, C:0.14, G:0.11, T:0.49
Consensus pattern (15 bp):
ATCATTGCATTTAGT
Found at i:30812884 original size:46 final size:46
Alignment explanation
Indices: 30812760--30812970 Score: 171
Period size: 46 Copynumber: 4.6 Consensus size: 46
30812750 GTACCAATGC
* * *
30812760 CATGTCCCAGACACGGTCTTACACTGGCA--CATC-CGAGGCTGATG
1 CATGTCCCAGACA-TGTCTTACACTAGCACTCATCTCGAGGCCGATG
* * *
30812804 CATGTCCCAGACATTTCTTACACTAGC-TTACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCACT-CATCTCGAGGCCGATG
* * * **
30812850 CATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGTTGATG
1 CATGTCCCAGACATGTCTTACACTAGCACTCATCTCGAGGCCGATG
* * * * * *
30812896 TTATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCACTCAT-CTCGAGGCCGATG
* *
30812944 CATGTCCTAGATATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
30812971 TCACACAAGT
Statistics
Matches: 134, Mismatches: 25, Indels: 14
0.77 0.14 0.08
Matches are distributed among these distances:
43 11 0.08
44 13 0.10
45 3 0.02
46 60 0.45
47 25 0.19
48 21 0.16
49 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCACTCATCTCGAGGCCGATG
Found at i:30817111 original size:40 final size:39
Alignment explanation
Indices: 30817012--30817225 Score: 254
Period size: 40 Copynumber: 5.4 Consensus size: 39
30817002 AAGCCAAGTA
* * *
30817012 CCTTCGGGATTTAACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCGGATATAG-TAACTCGCACAAATG
* *
30817050 CCTTCGGGACATAGTCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATG
*
30817090 CCTTCGGGACTTAGCCTGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCC-GGATATAGTAACTCGCACAAATG
*
30817130 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATG
* * **
30817170 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGTGCAAATG
1 CCTTCGGGACTTAG-CCGGATA-TAGTAACTCGCACAAATG
30817210 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
30817226 CGATTATCAT
Statistics
Matches: 156, Mismatches: 14, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
38 12 0.08
39 22 0.14
40 120 0.77
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATG
Found at i:30824853 original size:40 final size:40
Alignment explanation
Indices: 30824767--30824983 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
30824757 AAGCCAAGTA
* * *
30824767 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
30824805 CCTTCGGGACATAGCCTGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
30824845 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
30824885 CATTCGGGACTTAGCCCGAATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
30824925 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
30824965 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
30824984 TTATCATCCA
Statistics
Matches: 158, Mismatches: 17, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
38 12 0.08
39 17 0.11
40 129 0.82
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:30830456 original size:39 final size:39
Alignment explanation
Indices: 30830398--30830595 Score: 288
Period size: 39 Copynumber: 5.1 Consensus size: 39
30830388 ATTATATTAT
* * *
30830398 CAGCACAAAGCCTGCGGGACTTTAACCTGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
30830437 CAGCACCAAGCCTGTGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
30830476 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
30830515 TAGCACGAAGCATGCGGGACTTTAGCCCGGATAAATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
30830554 CAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
30830593 CAG
1 CAG
30830596 TGTCTGCATA
Statistics
Matches: 143, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 143 1.00
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:30836219 original size:39 final size:39
Alignment explanation
Indices: 30836175--30836333 Score: 246
Period size: 39 Copynumber: 4.1 Consensus size: 39
30836165 ATTATATTAT
* * *
30836175 CAGCACAAAGCCTGCAGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
30836214 CAGCACGAAGCCTGTGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
30836253 CAGCCCGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
30836292 CAGCACGAAGCCTGCGGGACTTTAGCCCAGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
30836331 CAG
1 CAG
30836334 TGTCTTGCAT
Statistics
Matches: 108, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 108 1.00
ACGTcount: A:0.25, C:0.30, G:0.24, T:0.21
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:30840968 original size:37 final size:37
Alignment explanation
Indices: 30840915--30841014 Score: 146
Period size: 37 Copynumber: 2.7 Consensus size: 37
30840905 CGAATAGTCC
* **
30840915 CCACACGTAGTTATCGGGTCTTACCTGGACAAAACCT
1 CCACACGTAGTCATCGGGTCTTACCCAGACAAAACCT
* * *
30840952 CCACACATAGTCATCGGGTCTTACCCAGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCAGACAAAACCT
30840989 CCACACGTAGTCATCGGGTCTTACCC
1 CCACACGTAGTCATCGGGTCTTACCC
30841015 GGAATATATT
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 56 1.00
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCAGACAAAACCT
Found at i:30841223 original size:48 final size:48
Alignment explanation
Indices: 30841158--30841582 Score: 760
Period size: 48 Copynumber: 8.9 Consensus size: 48
30841148 ATATACACAC
*
30841158 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
30841206 ATCTCACATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
30841254 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
30841302 ATCTCATACATATTTCACATTAGTCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
30841350 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
30841398 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
30841446 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAAACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
30841494 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
30841542 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
30841583 CACATATATA
Statistics
Matches: 362, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 362 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:30846915 original size:18 final size:18
Alignment explanation
Indices: 30846888--30846934 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
30846878 TGAATGGTGG
*
30846888 ACAC-ATAAACTGAGAAC
1 ACACGATAAACCGAGAAC
30846905 ACACGATAAACCGAGAAC
1 ACACGATAAACCGAGAAC
30846923 ACACGATAAACC
1 ACACGATAAACC
30846935 AAAACTACGC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
17 4 0.14
18 24 0.86
ACGTcount: A:0.51, C:0.28, G:0.13, T:0.09
Consensus pattern (18 bp):
ACACGATAAACCGAGAAC
Found at i:30849465 original size:40 final size:40
Alignment explanation
Indices: 30849381--30849564 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
30849371 TTGAATGCTG
* * * *
30849381 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
30849420 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
30849461 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
30849501 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
30849541 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
30849565 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:30849518 original size:80 final size:81
Alignment explanation
Indices: 30849381--30849561 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
30849371 TTGAATGCTG
* * *
30849381 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
30849445 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
30849461 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
30849522 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
30849541 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
30849562 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:30849585 original size:39 final size:38
Alignment explanation
Indices: 30849462--30849611 Score: 131
Period size: 40 Copynumber: 3.8 Consensus size: 38
30849452 GTTATTAATT
* ** * *
30849462 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACTAA-A
** *
30849502 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-AAA
*
30849541 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTA-AA
* *
30849581 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
30849612 GAGCTAAATC
Statistics
Matches: 93, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
39 30 0.32
40 63 0.68
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAAA
Found at i:30857309 original size:40 final size:40
Alignment explanation
Indices: 30857225--30857408 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
30857215 TTGAATGCTG
* * * *
30857225 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
30857264 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
30857305 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
30857345 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
30857385 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
30857409 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:30857362 original size:80 final size:81
Alignment explanation
Indices: 30857225--30857405 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
30857215 TTGAATGCTG
* * *
30857225 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
30857289 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
30857305 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
30857366 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
30857385 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
30857406 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:30857429 original size:39 final size:38
Alignment explanation
Indices: 30857306--30857455 Score: 131
Period size: 40 Copynumber: 3.8 Consensus size: 38
30857296 GTTATTAATT
* ** * *
30857306 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACTAA-A
** *
30857346 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-AAA
*
30857385 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTA-AA
* *
30857425 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
30857456 GAGCTAAATC
Statistics
Matches: 93, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
39 30 0.32
40 63 0.68
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAAA
Found at i:30870295 original size:39 final size:40
Alignment explanation
Indices: 30870218--30870324 Score: 119
Period size: 40 Copynumber: 2.7 Consensus size: 40
30870208 TAGCTCCTCG
* * *
30870218 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
30870258 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
**
30870297 CACGAATGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
30870325 ATTAGTATAT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
39 25 0.43
40 33 0.57
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:30870375 original size:80 final size:80
Alignment explanation
Indices: 30870264--30870444 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
30870254 CTCATTCAAT
* * *
30870264 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
30870327 TAGT-A-TATCGCACAAA
64 TAGTCACT-TAGCACAAA
**
30870343 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
30870407 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
30870424 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
30870445 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:30870404 original size:40 final size:40
Alignment explanation
Indices: 30870261--30870444 Score: 189
Period size: 40 Copynumber: 4.6 Consensus size: 40
30870251 TAACTCATTC
* *
30870261 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
*
30870301 AATGCCTTCGGGACTTAACCCGGAATTAGTATA-TCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATA-ACTCGCACA
*
30870341 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
30870381 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
30870422 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
30870445 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 14, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
39 9 0.07
40 101 0.83
41 12 0.10
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:30877905 original size:49 final size:49
Alignment explanation
Indices: 30877852--30878076 Score: 245
Period size: 49 Copynumber: 4.5 Consensus size: 49
30877842 CTGGTACGCA
30877852 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATTC-GGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTA-TCGGGTACACG
* ** ** * *
30877901 TAGTAGCCTTCACTTAGTACTACACATGTTACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCGGGTACACG
* * * * * *
30877951 TAGCAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCGGGTACACG
* * * *
30878002 TAGTAGCCTGCACTTAGTACTACACATGCGGCCAATAATCCGGTAGACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCGGGTACACG
*
30878051 TAGTAGCCTGTACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
30878077 CGTGACCTCA
Statistics
Matches: 144, Mismatches: 28, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
49 66 0.46
50 42 0.29
51 36 0.25
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCGGGTACACG
Found at i:30878024 original size:101 final size:98
Alignment explanation
Indices: 30877856--30878082 Score: 267
Period size: 100 Copynumber: 2.3 Consensus size: 98
30877846 TACGCATAGT
* * * * *
30877856 AGCCTGCACTTAGTACTACACATGCGACCAATTATTCGGTACACGTAGTAGCCTTCACTTAGTAC
1 AGCCTGCACTTAGTACTACACACGTGACAAATTATTCGGTACACATAGTAGCCTGCACTTAGTAC
** * *
30877921 TACACATGTTACCTAACCATCTGATACACGTAGC
66 TACACATGCGACC-AACAATCCGATACACGTAGC
*
30877955 AGCCTGCACTTAGTACTACACACGTGATCAAAGTTA-TCGGGTACGCATAGTAGCCTGCACTTAG
1 AGCCTGCACTTAGTACTACACACGTGA-CAAA-TTATTC-GGTACACATAGTAGCCTGCACTTAG
* * * * *
30878019 TACTACACATGCGGCCAATAATCCGGTAGACGTAGT
63 TACTACACATGCGACCAACAATCCGATACACGTAGC
*
30878055 AGCCTGTACTTAGTACTACACACGTGAC
1 AGCCTGCACTTAGTACTACACACGTGAC
30878083 CTCACAATAG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
99 26 0.24
100 45 0.41
101 38 0.35
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (98 bp):
AGCCTGCACTTAGTACTACACACGTGACAAATTATTCGGTACACATAGTAGCCTGCACTTAGTAC
TACACATGCGACCAACAATCCGATACACGTAGC
Found at i:30881860 original size:27 final size:27
Alignment explanation
Indices: 30881822--30881874 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
30881812 ATGTTGGGAT
* **
30881822 TGTAATGCCCCTATAGGGTAAAATGAC
1 TGTAATACCCCTATAAAGTAAAATGAC
*
30881849 TGTAATACCCCTGTAAAGTAAAATGA
1 TGTAATACCCCTATAAAGTAAAATGA
30881875 TTGTTTTTCC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (27 bp):
TGTAATACCCCTATAAAGTAAAATGAC
Found at i:30881897 original size:27 final size:27
Alignment explanation
Indices: 30881866--30881998 Score: 119
Period size: 27 Copynumber: 5.0 Consensus size: 27
30881856 CCCCTGTAAA
* *
30881866 GTAAAATGATTGTTTTTCCCTTATGTG
1 GTAAAATGACTGTTTTGCCCTTATGTG
* *
30881893 TTAAATTGACAT-TTTT-CCCTTA-GTG
1 GTAAAATGAC-TGTTTTGCCCTTATGTG
* * *
30881918 GTAAAATAACGGTTTTGCCCTTATGAG
1 GTAAAATGACTGTTTTGCCCTTATGTG
* * *
30881945 GTAAAACGATTATTTTGCCCTTATGTG
1 GTAAAATGACTGTTTTGCCCTTATGTG
** *
30881972 GTAGGATGACTGTTTTGCCCCTATGTG
1 GTAAAATGACTGTTTTGCCCTTATGTG
30881999 ATGTATGTTT
Statistics
Matches: 82, Mismatches: 20, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
25 14 0.17
26 12 0.15
27 55 0.67
28 1 0.01
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.41
Consensus pattern (27 bp):
GTAAAATGACTGTTTTGCCCTTATGTG
Found at i:30881933 original size:26 final size:26
Alignment explanation
Indices: 30881877--30881950 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 26
30881867 TAAAATGATT
* * *
30881877 GTTTTTCCCTTATGTGTTAAATTGAC
1 GTTTTTCCCTTATGTGGTAAAATAAC
*
30881903 ATTTTTCCCTTA-GTGGTAAAATAAC
1 GTTTTTCCCTTATGTGGTAAAATAAC
* *
30881928 GGTTTTGCCCTTATGAGGTAAAA
1 -GTTTTTCCCTTATGTGGTAAAA
30881951 CGATTATTTT
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
25 10 0.26
26 21 0.54
27 8 0.21
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.42
Consensus pattern (26 bp):
GTTTTTCCCTTATGTGGTAAAATAAC
Found at i:30882379 original size:18 final size:18
Alignment explanation
Indices: 30882334--30882434 Score: 130
Period size: 18 Copynumber: 5.6 Consensus size: 18
30882324 TGCACACTGC
* **
30882334 TTACTGTTACTACATTGT
1 TTACTGTTACTACACTAA
*
30882352 TTACTATTACTACACTAA
1 TTACTGTTACTACACTAA
* *
30882370 TTATTGTTACTGCACTAA
1 TTACTGTTACTACACTAA
*
30882388 TTACTGTTACTGCACTAA
1 TTACTGTTACTACACTAA
*
30882406 TTACTGTTACTACACTAT
1 TTACTGTTACTACACTAA
30882424 TTACTGTTACT
1 TTACTGTTACT
30882435 GTAATGGGCC
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 73 1.00
ACGTcount: A:0.28, C:0.20, G:0.08, T:0.45
Consensus pattern (18 bp):
TTACTGTTACTACACTAA
Found at i:30886495 original size:22 final size:22
Alignment explanation
Indices: 30886465--30886508 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
30886455 GAAAATAATC
*
30886465 AAAAATAATCAAAATTTATTAT
1 AAAAATAATCAAAATTCATTAT
* *
30886487 AAAATTAATTAAAATTCATTAT
1 AAAAATAATCAAAATTCATTAT
30886509 GTTAATAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAAATAATCAAAATTCATTAT
Found at i:30892114 original size:19 final size:19
Alignment explanation
Indices: 30892090--30892128 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
30892080 GAAAATGTGG
30892090 AAGTTATGCCTATAAATTT
1 AAGTTATGCCTATAAATTT
*
30892109 AAGTTATGCCTATGAATTT
1 AAGTTATGCCTATAAATTT
30892128 A
1 A
30892129 TGATGACACG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.41
Consensus pattern (19 bp):
AAGTTATGCCTATAAATTT
Found at i:30897089 original size:39 final size:39
Alignment explanation
Indices: 30897045--30897360 Score: 506
Period size: 39 Copynumber: 8.1 Consensus size: 39
30897035 AATTATATTA
* ** *
30897045 CCAGCACAAAGCCTGTAGGACTTTAACCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
30897084 CCAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
30897123 CCAGCACGAAGCCTGCGGGACTTTAGGCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* * * *
30897162 CCAGCACGAAGCCTACAGGACTTTGGCCCGGATATATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
30897201 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
30897240 CCAGCACGAAGCCTGCGGGACTTTAGCCCAGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
30897279 CCAGCACGAAGCCTGCTGGACTTTGGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
30897318 CCAGCACGAAGCCTGGGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
30897357 CCAG
1 CCAG
30897361 TGTCTTGCAT
Statistics
Matches: 254, Mismatches: 23, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 254 1.00
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:30899689 original size:24 final size:24
Alignment explanation
Indices: 30899639--30899692 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
30899629 AATCGAATTT
*
30899639 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
30899663 GCACACATAGTGCCATAG-CACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
30899687 GCACAC
1 GCACAC
30899693 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 6 0.22
26 2 0.07
ACGTcount: A:0.30, C:0.39, G:0.17, T:0.15
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:30900214 original size:32 final size:32
Alignment explanation
Indices: 30900178--30900257 Score: 99
Period size: 32 Copynumber: 2.5 Consensus size: 32
30900168 AAGGCCGAAT
*
30900178 GTATTATCACTAT-TAAGGTAACCTAGTCTCAA
1 GTATTATCAAT-TCTAAGGTAACCTAGTCTCAA
* *
30900210 GTATTTTTAATTCTAAGGTAACCTAGTCTCAA
1 GTATTATCAATTCTAAGGTAACCTAGTCTCAA
* *
30900242 GTATTTTTAATTCTAA
1 GTATTATCAATTCTAA
30900258 TATACAACAT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
31 1 0.02
32 43 0.98
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.41
Consensus pattern (32 bp):
GTATTATCAATTCTAAGGTAACCTAGTCTCAA
Found at i:30906199 original size:39 final size:39
Alignment explanation
Indices: 30906155--30906430 Score: 498
Period size: 39 Copynumber: 7.1 Consensus size: 39
30906145 ATTATATTAT
* *
30906155 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
30906194 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
30906233 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
30906272 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
30906311 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
30906350 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
30906389 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
30906428 CAG
1 CAG
30906431 TGTCTTGCAT
Statistics
Matches: 229, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 229 1.00
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:30909324 original size:25 final size:25
Alignment explanation
Indices: 30909267--30909327 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
30909257 AATTTATATT
30909267 CAGGAATGCTCTTTCGAGCACATAAA
1 CAGGAA-GCTCTTTCGAGCACATAAA
* *
30909293 CAAGAAGCTCTTTTGAGC-CATATAA
1 CAGGAAGCTCTTTCGAGCACATA-AA
*
30909318 CGGGAAGCTC
1 CAGGAAGCTC
30909328 AAGGGAGCCA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 4 0.13
25 21 0.70
26 5 0.17
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (25 bp):
CAGGAAGCTCTTTCGAGCACATAAA
Found at i:30909435 original size:26 final size:26
Alignment explanation
Indices: 30909404--30909463 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
30909394 GAAGCTTCGG
*
30909404 AGAGCCATTAATCGAGAAGCTCGCAA
1 AGAGCCATTAATCGAGAAGCTCACAA
* * *
30909430 AGAGCCTTTAATTGAGAAGCTCACGA
1 AGAGCCATTAATCGAGAAGCTCACAA
30909456 AGAGCCAT
1 AGAGCCAT
30909464 GTATCGGGAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.18
Consensus pattern (26 bp):
AGAGCCATTAATCGAGAAGCTCACAA
Found at i:30911590 original size:38 final size:38
Alignment explanation
Indices: 30911542--30911651 Score: 134
Period size: 38 Copynumber: 2.9 Consensus size: 38
30911532 CGTTATTCAG
* *
30911542 GCTCTGTGCCTAGCAGACTTTGTGACAGTGATATTCGA
1 GCTCTATGCCTAGCAGGCTTTGTGACAGTGATATTCGA
* *
30911580 GCTTTATGCCTAGCAGGCTTTGT-ACCAGTGATATTCGG
1 GCTCTATGCCTAGCAGGCTTTGTGA-CAGTGATATTCGA
* * *
30911618 GCTCTGTGCCTAGCAGGCTTCGTGCCAGTG-TATT
1 GCTCTATGCCTAGCAGGCTTTGTGACAGTGATATT
30911652 AATTTAGGAT
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
37 5 0.08
38 57 0.92
ACGTcount: A:0.17, C:0.23, G:0.27, T:0.33
Consensus pattern (38 bp):
GCTCTATGCCTAGCAGGCTTTGTGACAGTGATATTCGA
Found at i:30911706 original size:41 final size:41
Alignment explanation
Indices: 30911534--30911804 Score: 166
Period size: 41 Copynumber: 6.8 Consensus size: 41
30911524 AAACGTAACG
* * * * *
30911534 TTAT-TCAGGCTCTGTGCCTAGCAGACTTTGTGACAGTG-A
1 TTATATCAGGCTTTGTGCCTAGCAGGCTTCGTGTCGGTGTA
* * ** *
30911573 -TAT-TC-GAGCTTTATGCCTAGCAGGCTTTGTACCAGTG-A
1 TTATATCAG-GCTTTGTGCCTAGCAGGCTTCGTGTCGGTGTA
* * * *
30911611 -TAT-TCGGGCTCTGTGCCTAGCAGGCTTCGTGCCAGTGTA
1 TTATATCAGGCTTTGTGCCTAGCAGGCTTCGTGTCGGTGTA
* * * *
30911650 TTA-ATTTAGGATTTGTGCCTAACAGGCTTCGTGTTGGTGTA
1 TTATA-TCAGGCTTTGTGCCTAGCAGGCTTCGTGTCGGTGTA
* * * *
30911691 TTATATCAGGCTTTGTACCCAGTAGGCTT-GTGTCGGTATA
1 TTATATCAGGCTTTGTGCCTAGCAGGCTTCGTGTCGGTGTA
* ** * * * *
30911731 TTATATCAGGCTTTGTGCCTAGTAGGCTTTATGCCAGTATG
1 TTATATCAGGCTTTGTGCCTAGCAGGCTTCGTGTCGGTGTA
* * *
30911772 TTATATCAGGCTTTGAGCCTGGCAGTCTTCGTG
1 TTATATCAGGCTTTGTGCCTAGCAGGCTTCGTG
30911805 CCAATGTATT
Statistics
Matches: 187, Mismatches: 37, Indels: 14
0.79 0.16 0.06
Matches are distributed among these distances:
37 1 0.01
38 62 0.33
39 2 0.01
40 38 0.20
41 83 0.44
42 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.26, T:0.36
Consensus pattern (41 bp):
TTATATCAGGCTTTGTGCCTAGCAGGCTTCGTGTCGGTGTA
Found at i:30911739 original size:40 final size:40
Alignment explanation
Indices: 30911673--30911786 Score: 138
Period size: 40 Copynumber: 2.8 Consensus size: 40
30911663 TGTGCCTAAC
* *
30911673 AGGCTTCGTGTTGGTGTATTATATCAGGCTTTGTACCCAGT
1 AGGCTT-GTGTCGGTATATTATATCAGGCTTTGTACCCAGT
* *
30911714 AGGCTTGTGTCGGTATATTATATCAGGCTTTGTGCCTAGT
1 AGGCTTGTGTCGGTATATTATATCAGGCTTTGTACCCAGT
* * * *
30911754 AGGCTTTATGCCAGTATGTTATATCAGGCTTTG
1 AGGC-TTGTGTCGGTATATTATATCAGGCTTTG
30911787 AGCCTGGCAG
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
40 34 0.53
41 30 0.47
ACGTcount: A:0.18, C:0.16, G:0.26, T:0.39
Consensus pattern (40 bp):
AGGCTTGTGTCGGTATATTATATCAGGCTTTGTACCCAGT
Found at i:30917881 original size:50 final size:50
Alignment explanation
Indices: 30917822--30917922 Score: 184
Period size: 50 Copynumber: 2.0 Consensus size: 50
30917812 TCAGAAACAT
* *
30917822 TTACTGGAATCAAATATGCATCAGCAGCTAAGCAAGAATCCTAAAACTAG
1 TTACTGGAATCAAAGATGCATCAACAGCTAAGCAAGAATCCTAAAACTAG
30917872 TTACTGGAATCAAAGATGCATCAACAGCTAAGCAAGAATCCTAAAACTAG
1 TTACTGGAATCAAAGATGCATCAACAGCTAAGCAAGAATCCTAAAACTAG
30917922 T
1 T
30917923 ATATGCTATT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.22
Consensus pattern (50 bp):
TTACTGGAATCAAAGATGCATCAACAGCTAAGCAAGAATCCTAAAACTAG
Found at i:30927010 original size:32 final size:32
Alignment explanation
Indices: 30926959--30927022 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
30926949 TGGAAAAGAT
30926959 AGTACGCCCCAGCAAAAAAGATTGGTCTCGAA
1 AGTACGCCCCAGCAAAAAAGATTGGTCTCGAA
*
30926991 AGTATGCCCCAG-AAGAAAAGATTGGTCTCGAA
1 AGTACGCCCCAGCAA-AAAAGATTGGTCTCGAA
30927023 GTCTTGTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 2 0.07
32 28 0.93
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (32 bp):
AGTACGCCCCAGCAAAAAAGATTGGTCTCGAA
Found at i:30930330 original size:47 final size:47
Alignment explanation
Indices: 30930272--30930393 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
30930262 GCATTGGCAC
*
30930272 TAAGACAAGGATACCATGTAAGACCATGTTTGCAACATGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGCAACATGGCATTTGG
*
30930319 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGCAACATGGCATTTGG
* *
30930366 TAAGATAAAGATATCATGTAAGACCATG
1 TAAGATAAGGATACCATGTAAGACCATG
30930394 CCAAGGCATG
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.26
Consensus pattern (47 bp):
TAAGATAAGGATACCATGTAAGACCATGTTTGCAACATGGCATTTGG
Found at i:30930550 original size:53 final size:54
Alignment explanation
Indices: 30930375--30930568 Score: 221
Period size: 55 Copynumber: 3.6 Consensus size: 54
30930365 GTAAGATAAA
* * *
30930375 GATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAG
* * * * * *
30930429 GAAATCATGTAACACCATGTCAAGACATGGAATTGATGAGTTACTATAAGGCAAAT
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC-AAG
* * * *
30930485 G-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGCTC-ATAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAG
* *
30930537 GATACCACGTAAGACCATGTCAAGACATGGCA
1 GATACCATGTAAGACCATGCCAAGACATGGCA
30930569 ATGGTAAGTT
Statistics
Matches: 116, Mismatches: 21, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
52 3 0.03
53 33 0.28
54 37 0.32
55 40 0.34
56 3 0.03
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.22
Consensus pattern (54 bp):
GATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAG
Found at i:30938033 original size:47 final size:46
Alignment explanation
Indices: 30937773--30938132 Score: 497
Period size: 46 Copynumber: 7.8 Consensus size: 46
30937763 GTGTGCTCTC
* * *
30937773 TGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* *
30937819 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* *
30937865 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* *
30937911 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
*
30937957 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCACGGCAACA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
*** *
30938003 TGACGGGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
*** *
30938050 TGACGGGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * *
30938097 TGACA-GAAAATGAGTAAAACCATAGTTGAAAGATAC
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATAC
30938133 TATGACATCA
Statistics
Matches: 296, Mismatches: 17, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
46 208 0.70
47 88 0.30
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:30948373 original size:9 final size:9
Alignment explanation
Indices: 30948350--30948379 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
30948340 ATTTATATTT
30948350 TATTAAAAA
1 TATTAAAAA
30948359 TA-TAAAAA
1 TATTAAAAA
30948367 TATTAAAAA
1 TATTAAAAA
30948376 TATT
1 TATT
30948380 GTCTTATTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (9 bp):
TATTAAAAA
Found at i:30948909 original size:18 final size:18
Alignment explanation
Indices: 30948883--30948925 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
30948873 GACTAGGAAA
* *
30948883 AGGAAACATATAAGGGTT
1 AGGATACATATAAGGGCT
30948901 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
30948919 AGGATAC
1 AGGATAC
30948926 GCATATGGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.42, C:0.09, G:0.28, T:0.21
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:30949976 original size:19 final size:21
Alignment explanation
Indices: 30949945--30949985 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
30949935 TTGTTGCTGT
30949945 ATTGGATTAGAGGTGT-ATGG
1 ATTGGATTAGAGGTGTAATGG
30949965 ATTGGA-TAGAGGTGTAATGG
1 ATTGGATTAGAGGTGTAATGG
30949985 A
1 A
30949986 ATAGAGGGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.29, C:0.00, G:0.39, T:0.32
Consensus pattern (21 bp):
ATTGGATTAGAGGTGTAATGG
Found at i:30950070 original size:44 final size:46
Alignment explanation
Indices: 30949977--30950072 Score: 133
Period size: 44 Copynumber: 2.1 Consensus size: 46
30949967 TGGATAGAGG
* *
30949977 TGTAATGGAATAGAGGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGGCGTAATAGCAAAACAACTGTTTGGTTGAA
* **
30950023 TGTAATGGAATAGA-GGCGTAATAGTAAAAC-TGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGGCGTAATAGCAAAACAACTGTTTGGTTGAA
30950067 TGTAAT
1 TGTAAT
30950073 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
44 18 0.40
45 13 0.29
46 14 0.31
ACGTcount: A:0.34, C:0.05, G:0.28, T:0.32
Consensus pattern (46 bp):
TGTAATGGAATAGAGGGCGTAATAGCAAAACAACTGTTTGGTTGAA
Found at i:30950255 original size:18 final size:17
Alignment explanation
Indices: 30950234--30950268 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
30950224 TTATTATTTA
*
30950234 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
30950252 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
30950269 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:30950262 original size:28 final size:27
Alignment explanation
Indices: 30950192--30950264 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
30950182 TTTATTATCA
*
30950192 AAAATAAATAATTTAATCATATTTAAAC
1 AAAATATATAATTTAAT-ATATTTAAAC
* * **
30950220 ATAAT-TATTATTTAATATATTTTAATT
1 AAAATATATAATTTAATATA-TTTAAAC
30950247 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
30950265 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 15 0.42
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATATAATTTAATATATTTAAAC
Found at i:30950408 original size:15 final size:16
Alignment explanation
Indices: 30950375--30950408 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
30950365 AATTATTATT
*
30950375 AATATATTTTAATTAA
1 AATATAATTTAATTAA
30950391 AATATAATTTAA-TAA
1 AATATAATTTAATTAA
30950406 AAT
1 AAT
30950409 TCTTAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
AATATAATTTAATTAA
Found at i:30950419 original size:140 final size:146
Alignment explanation
Indices: 30950153--30950420 Score: 467
Period size: 143 Copynumber: 1.9 Consensus size: 146
30950143 ATGATTATTG
30950153 TTATTGTTATTTAAATTTTAATAAGATTATTTATTATCAAAAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTA--TATTATCAAAAATAAATAATTTAATCATATTTAA
30950218 ACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
64 ACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
30950283 AGAAATTGTTTTGGTAAA
129 AGAAATTGTTTTGGTAAA
*
30950301 TTATT-TTATTTAAATTTTAATAAGATTA-A-TATCAATAATAAATAATTTAATCATATTTAAAC
1 TTATTGTTATTTAAATTTTAATAAGATTATATTATCAAAAATAAATAATTTAATCATATTTAAAC
30950363 ATAATTATTA-TTAATATATTTTAATT-AAA-ATATAATTTAATAAAATTCTTAATAATTA
66 ATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
30950421 ATATTCTTAT
Statistics
Matches: 119, Mismatches: 1, Indels: 8
0.93 0.01 0.06
Matches are distributed among these distances:
140 29 0.24
141 3 0.03
142 16 0.13
143 42 0.35
144 1 0.01
147 23 0.19
148 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (146 bp):
TTATTGTTATTTAAATTTTAATAAGATTATATTATCAAAAATAAATAATTTAATCATATTTAAAC
ATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAG
AAATTGTTTTGGTAAA
Found at i:30950515 original size:18 final size:17
Alignment explanation
Indices: 30950494--30950528 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
30950484 TTATTATTAA
30950494 ATATAATATAATTAAAAT
1 ATATAATATAA-TAAAAT
*
30950512 ATATAATTTAATAAAAT
1 ATATAATATAATAAAAT
30950529 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATATAATATAATAAAAT
Found at i:30950516 original size:120 final size:117
Alignment explanation
Indices: 30950360--30950579 Score: 386
Period size: 120 Copynumber: 1.9 Consensus size: 117
30950350 ATCATATTTA
* *
30950360 AACATAATTATTATTAATATATTTTAATTAAAATATAATTTAATAAAATTCTTAATAATTAATAT
1 AACATAATTATTATTAATATAATATAATTAAAATATAATTTAATAAAATTCTTAATAATTAATAT
30950425 TCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
66 TCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
30950477 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATT-AATATAATATAATT-AAA-ATATAATTTAATAAAATTCTTAATAATTAA
*
30950542 TATTCTTATATGAATTTACTCAAATCATAATATATGAT
63 TATTCTTATATGAATTTACTCAAACCATAATATATGAT
30950580 TATAACTAAT
Statistics
Matches: 97, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
117 15 0.15
118 12 0.12
119 3 0.03
120 67 0.69
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.42
Consensus pattern (117 bp):
AACATAATTATTATTAATATAATATAATTAAAATATAATTTAATAAAATTCTTAATAATTAATAT
TCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
Found at i:30950591 original size:17 final size:16
Alignment explanation
Indices: 30950569--30950615 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
30950559 ACTCAAATCA
30950569 TAATATATGATTATAAC
1 TAATATATGATT-TAAC
*
30950586 T-A-ATATGATTTAAT
1 TAATATATGATTTAAC
30950600 TAAATATATGATTTAA
1 T-AATATATGATTTAA
30950616 TAAAATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 4 0.15
15 8 0.31
16 2 0.08
17 12 0.46
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (16 bp):
TAATATATGATTTAAC
Found at i:30950616 original size:17 final size:17
Alignment explanation
Indices: 30950588--30950621 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
30950578 ATTATAACTA
*
30950588 ATATGATTTAATTAAAT
1 ATATGATTTAATAAAAT
30950605 ATATGATTTAATAAAAT
1 ATATGATTTAATAAAAT
30950622 TTAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
ATATGATTTAATAAAAT
Done.