Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 96 of 362
Found at i:30955077 original size:49 final size:48
Alignment explanation
Indices: 30954854--30955076 Score: 176
Period size: 49 Copynumber: 4.7 Consensus size: 48
30954844 TAGAGACGAG
* * * * *
30954854 AGCTAGTGTAAGACATTTTTGGGACAT-GCATCAGCTTCGA-GATATACA
1 AGCTAGTGTAAGACCTGTCTGGGACATGGCATCAGCCT-GATG-TATAAA
* *
30954902 AGCTAGTGTAAGACCTATCTGGGACTTGGCATCAG-CT--TGT-T--A
1 AGCTAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTGATGTATAAA
* * * *
30954944 AGCGTCAATGTAAGACCTGTCTGGGACATGGCATTAGCACTGATAG-ATGAG
1 AGC-T-AGTGTAAGACCTGTCTGGGACATGGCATCAGC-CTGAT-GTATAAA
* * * *
30954995 AGCCAGTGTAAGACCTGTCTGGGACACGACATCGGCCTCGATGTATAAA
1 AGCTAGTGTAAGACCTGTCTGGGACATGGCATCAGCCT-GATGTATAAA
*
30955044 AGTTAGTGTAAGACCTGTCTGGGACATGGCATC
1 AGCTAGTGTAAGACCTGTCTGGGACATGGCATC
30955077 GACTTTGATG
Statistics
Matches: 139, Mismatches: 22, Indels: 27
0.74 0.12 0.14
Matches are distributed among these distances:
42 4 0.03
43 1 0.01
44 28 0.20
45 1 0.01
46 3 0.02
48 28 0.20
49 71 0.51
51 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (48 bp):
AGCTAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTGATGTATAAA
Found at i:30964033 original size:40 final size:40
Alignment explanation
Indices: 30963909--30964118 Score: 241
Period size: 39 Copynumber: 5.3 Consensus size: 40
30963899 CATTTGAATG
* * *
30963909 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * * *
30963949 TTATCCGGGCTAAG-CCCCAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
*
30963988 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
*
30964028 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* * ** *
30964068 ATA-CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
30964107 ATATCC-GGCTAA
1 ATATCCGGGCTAA
30964119 ATTCGAAGAA
Statistics
Matches: 153, Mismatches: 12, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.01
39 74 0.48
40 74 0.48
41 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:30964041 original size:79 final size:78
Alignment explanation
Indices: 30963910--30964118 Score: 235
Period size: 79 Copynumber: 2.7 Consensus size: 78
30963900 ATTTGAATGA
* * * *
30963910 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAG-CCCCAAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGACCCCAAGGCAT
* **
30963974 TTATGCTAGTGATTT
66 TTATGCGAGT--TGC
*
30963989 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGCA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATTATATCCGGGCTAAGACCCCAAGGCA
*
30964053 TTTGTGCGAGTTGC
65 TTTATGCGAGTTGC
* * ** *
30964067 TATACCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 TAT-CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAA
30964119 ATTCGAAGAA
Statistics
Matches: 112, Mismatches: 14, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
78 12 0.11
79 79 0.71
80 21 0.19
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (78 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGACCCCAAGGCAT
TTATGCGAGTTGC
Found at i:30972067 original size:40 final size:40
Alignment explanation
Indices: 30972012--30972222 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
30972002 ATTTGAATGA
*
30972012 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
*
30972052 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * *
30972092 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * *
30972132 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * * * * *
30972172 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
30972212 TATCC-GGCTAA
1 TATCCGGGCTAA
30972223 ATTCCGAAGA
Statistics
Matches: 156, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 7 0.04
40 146 0.94
41 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:30973823 original size:49 final size:49
Alignment explanation
Indices: 30973661--30973877 Score: 128
Period size: 49 Copynumber: 4.5 Consensus size: 49
30973651 GACGAGAGCT
* * * * * *
30973661 AGTGTAAGACATGTCTCGGATAT-GCATCAGCCTCGAGATAT-ACAAGCT
1 AGTGTAAGACATGTCTGGGACATGGCATCAACCTCGATAGATGA-AAGCC
* * ** *
30973709 AGTGTAAGACCA-GTTTGGGACATGGCATCAA-CT---T-GTTGAGTGTC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCAACCTCGATAGATGAAAGCC
* * * * * *
30973753 AATGTAAGACTTGCCTAGGACATGGTATCAACAC-CGATAGATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCAAC-CTCGATAGATGAAAGCC
* * ** * *
30973802 AGTGTAAGACCTGTCTGGGACACGGCATCGGCCTCGATATATGAAAGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCAACCTCGATAGATGAAAGCC
30973851 AGTGTAAGATCATGTCTGGGACATGGC
1 AGTGTAAGA-CATGTCTGGGACATGGC
30973878 GTCGGCATTT
Statistics
Matches: 124, Mismatches: 33, Indels: 22
0.69 0.18 0.12
Matches are distributed among these distances:
43 1 0.01
44 25 0.20
45 1 0.01
46 1 0.01
48 21 0.17
49 60 0.48
50 15 0.12
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.24
Consensus pattern (49 bp):
AGTGTAAGACATGTCTGGGACATGGCATCAACCTCGATAGATGAAAGCC
Found at i:30973883 original size:50 final size:49
Alignment explanation
Indices: 30973787--30973883 Score: 131
Period size: 49 Copynumber: 2.0 Consensus size: 49
30973777 GTATCAACAC
* *
30973787 CGATAGATGAGAGCCAGTGTAAGACCTGTCTGGGACACGGCATCGGCCT
1 CGATAGATGAAAGCCAGTGTAAGACATGTCTGGGACACGGCATCGGCCT
* * * *
30973836 CGATATATGAAAGTCAGTGTAAGATCATGTCTGGGACATGGCGTCGGC
1 CGATAGATGAAAGCCAGTGTAAGA-CATGTCTGGGACACGGCATCGGC
30973884 ATTTTATCCC
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
49 21 0.51
50 20 0.49
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.22
Consensus pattern (49 bp):
CGATAGATGAAAGCCAGTGTAAGACATGTCTGGGACACGGCATCGGCCT
Found at i:30984158 original size:46 final size:46
Alignment explanation
Indices: 30984108--30984283 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
30984098 TGGTTGAGCA
*
30984108 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
30984154 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
30984201 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
30984247 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
30984284 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 6 0.05
45 3 0.03
46 66 0.59
47 29 0.26
48 3 0.03
50 5 0.04
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:30984264 original size:93 final size:93
Alignment explanation
Indices: 30984105--30984275 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
30984095 GGATGGTTGA
***
30984105 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
30984170 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
30984198 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
30984263 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
30984276 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:30984536 original size:19 final size:20
Alignment explanation
Indices: 30984499--30984536 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
30984489 ATAAGGTGGT
30984499 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
30984519 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
30984537 TGGTGATACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:31013402 original size:49 final size:49
Alignment explanation
Indices: 31013289--31013518 Score: 186
Period size: 49 Copynumber: 4.7 Consensus size: 49
31013279 CTGGTACGCA
* * * *
31013289 TAGTAGCCTGCACTCT-GTACTACACATGTGACCTATGA-ATCTGGTACACG
1 TAGTAGCCTGCACT-TAGTACTACACACGTGA-CT-TAACATCTGATACAAG
* *
31013339 TAGTAGCATGCACTTAGTACTACACACGTGACTTAACATCTAATACAAG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACATCTGATACAAG
* ** *
31013388 TAGTAGCCTGCACTTAGTACTTCACACGTGATCAAGTTAAC-GGT-ATGC-A-
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C---TTAACATCTGATACAAG
* * * * *
31013437 TAGTAGCCTGCACTTAGTA-TACACATGTGACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAAC-ATCTGATACAAG
* *
31013486 TATTAGCCTACACTTAGTACTACACACGTGACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACT
31013519 CACAAAGGAT
Statistics
Matches: 144, Mismatches: 24, Indels: 24
0.75 0.12 0.12
Matches are distributed among these distances:
44 3 0.02
46 1 0.01
47 3 0.02
48 11 0.08
49 77 0.53
50 40 0.28
51 3 0.02
52 1 0.01
53 5 0.03
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.28
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACATCTGATACAAG
Found at i:31013493 original size:98 final size:98
Alignment explanation
Indices: 31013339--31013516 Score: 250
Period size: 98 Copynumber: 1.8 Consensus size: 98
31013329 CTGGTACACG
* *
31013339 TAGTAGCATGCACTTAGTACTACACACGTGACTTAACATCTAATACAAGTAGTAGCCTGCACTTA
1 TAGTAGCATGCACTTAGTACTACACACGTGACCTAACATCTAATACAAGTAGTAGCCTACACTTA
*
31013404 GTACTTCACACGTGATCAAGTTAACGGTATGCA
66 GTACTACACACGTGATCAAGTTAACGGTATGCA
* * * ** * *
31013437 TAGTAGCCTGCACTTAGTA-TACACATGTGACCTATCAATCTGGTACACGTATTAGCCTACACTT
1 TAGTAGCATGCACTTAGTACTACACACGTGACCTAAC-ATCTAATACAAGTAGTAGCCTACACTT
31013501 AGTACTACACACGTGA
65 AGTACTACACACGTGA
31013517 CTCACAAAGG
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
97 14 0.20
98 55 0.80
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (98 bp):
TAGTAGCATGCACTTAGTACTACACACGTGACCTAACATCTAATACAAGTAGTAGCCTACACTTA
GTACTACACACGTGATCAAGTTAACGGTATGCA
Found at i:31016425 original size:5 final size:5
Alignment explanation
Indices: 31016415--31016444 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
31016405 AAATTAAAAA
31016415 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
31016445 GGTTGGCATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:31018392 original size:40 final size:40
Alignment explanation
Indices: 31018348--31018528 Score: 174
Period size: 40 Copynumber: 4.5 Consensus size: 40
31018338 TCGTTCAAAA
*
31018348 TGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAT
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAT
* *
31018388 TGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAT
* *
31018428 TGCCTTCGGG-CTTTAGCCCGG-AATTAGTATCTCGCACAAT
1 TGCCTTCGGGAC-TTAGCCCGGTTA-TAGTAACTCGCACAAT
* * * * *
31018468 TGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAA-
1 TGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCACAAT
* *
31018508 AGCCTTCGGAACTTAGCCCGG
1 TGCCTTCGGGACTTAGCCCGG
31018529 ACATCATTCA
Statistics
Matches: 116, Mismatches: 16, Indels: 18
0.77 0.11 0.12
Matches are distributed among these distances:
39 3 0.03
40 100 0.86
41 13 0.11
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.27
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAT
Found at i:31018489 original size:80 final size:81
Alignment explanation
Indices: 31018345--31018529 Score: 209
Period size: 80 Copynumber: 2.3 Consensus size: 81
31018335 TACTCGTTCA
* *
31018345 AAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 AAATGCCTTCGGG-CTTAGCCCGGAATATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
* *
31018409 ATTTAGTAAC-TCGCAC
65 ATATAGTAACTTAGCAC
* **
31018425 AAATGCCTTCGGGCTTTAGCCCGGAAT-TAGTATCTCGCACAATTGCCTTC-GGATCTTAGTCCG
1 AAATGCCTTCGGGC-TTAGCCCGGAATATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCCG
* *
31018488 GATATGGTCACTTAGCAC
64 GATATAGTAACTTAGCAC
*
31018506 AAA-GCCTTCGGAACTTAGCCCGGA
1 AAATGCCTTCGG-GCTTAGCCCGGA
31018530 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.84
81 10 0.11
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
AAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:31026573 original size:79 final size:82
Alignment explanation
Indices: 31026462--31026646 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
31026452 GCTACTCGTT
* * *
31026462 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATTGCCTTC-AGATCTTAACCC
* *
31026525 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
31026542 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAATTGCCTTCAGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATTGCCTTCAGATCTTAACCCG
* *
31026605 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
31026622 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
31026647 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 2 0.02
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATTGCCTTCAGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:31026579 original size:39 final size:40
Alignment explanation
Indices: 31026462--31026646 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
31026452 GCTACTCGTT
*
31026462 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
31026502 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
31026542 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * * *
31026581 CAATTGCCTTC-AGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
31026622 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
31026647 CATCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
38 1 0.01
39 32 0.26
40 77 0.64
41 11 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:31038284 original size:27 final size:27
Alignment explanation
Indices: 31038250--31038427 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
31038240 TAAATTGTAC
31038250 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
31038277 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
31038303 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
31038331 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
31038359 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
31038386 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
31038413 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
31038428 GACTTAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:31038364 original size:82 final size:81
Alignment explanation
Indices: 31038251--31038406 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
31038241 AAATTGTACA
* *
31038251 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
31038315 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
31038332 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
31038397 TGCGAGTTGA
65 TGCGAATTGA
31038407 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:31038418 original size:82 final size:81
Alignment explanation
Indices: 31038247--31038427 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
31038237 GGTTAAATTG
* *
31038247 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
31038312 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
31038328 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
31038392 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
31038410 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
31038428 GACTTAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:31046230 original size:27 final size:27
Alignment explanation
Indices: 31046196--31046373 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
31046186 TAAATTGTAC
31046196 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
31046223 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
31046249 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
31046277 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
31046305 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
31046332 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
31046359 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
31046374 GACTTAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:31046310 original size:82 final size:81
Alignment explanation
Indices: 31046197--31046352 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
31046187 AAATTGTACA
* *
31046197 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
31046261 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
31046278 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
31046343 TGCGAGTTGA
65 TGCGAATTGA
31046353 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:31046364 original size:82 final size:81
Alignment explanation
Indices: 31046193--31046373 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
31046183 GGTTAAATTG
* *
31046193 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
31046258 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
31046274 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
31046338 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
31046356 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
31046374 GACTTAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:31051236 original size:15 final size:15
Alignment explanation
Indices: 31051216--31051245 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
31051206 AAACCGTTAG
31051216 TGGAGGACCGATGGC
1 TGGAGGACCGATGGC
*
31051231 TGGAGGAGCGATGGC
1 TGGAGGACCGATGGC
31051246 GCGATGGTGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.17, G:0.50, T:0.13
Consensus pattern (15 bp):
TGGAGGACCGATGGC
Found at i:31078286 original size:15 final size:15
Alignment explanation
Indices: 31078268--31078300 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
31078258 TGGATTCTCG
31078268 TATCATGGATTTCTT
1 TATCATGGATTTCTT
*
31078283 TATCTTGGATTTCTT
1 TATCATGGATTTCTT
31078298 TAT
1 TAT
31078301 TCTAGGCTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.12, T:0.58
Consensus pattern (15 bp):
TATCATGGATTTCTT
Found at i:31087414 original size:39 final size:39
Alignment explanation
Indices: 31087371--31087586 Score: 193
Period size: 40 Copynumber: 5.4 Consensus size: 39
31087361 TCCTCGTTCA
* * * * *
31087371 AATGCCTTCAGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
31087410 AATGCCTTCGGGACTTAACCCGGATTTAATGACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
31087449 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * * *
31087489 AAAGGCCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
31087529 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
*
31087570 AAAGCCTTCGGGACTTA
1 AATGCCTTCGGGACTTA
31087587 GCCTGGACAG
Statistics
Matches: 146, Mismatches: 25, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
39 36 0.25
40 99 0.68
41 11 0.08
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:31087457 original size:40 final size:38
Alignment explanation
Indices: 31087336--31087586 Score: 186
Period size: 40 Copynumber: 6.3 Consensus size: 38
31087326 AAATCACGTA
* * *
31087336 CCTTCGGGATTTAA-CCGGATATAGCTCCTCGTTCA-AATG
1 CCTTCGGGACTTAACCCGGATTTAG-TACTCG--CACAATG
* * * * *
31087375 CCTTCAGGACATAGCCCGGTTTTAGTAACTCACACAATG
1 CCTTCGGGACTTAACCCGGATTTAGT-ACTCGCACAATG
*
31087414 CCTTCGGGACTTAACCCGGATTTAATGACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGATTTAGT-ACTCGCAC-AATG
*
31087454 CCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGATTTAGTA-CTCGCAC-AATG
* *
31087494 CCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCACAAATG
1 CCTTCGGGACTTAACCCGG-ATTTAGTA-CTCGCAC-AATG
** * * * *
31087534 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAG
1 CCTTCGGGA-CTTAACCCGGATTTAGT-AC-TCGCACAATG
31087574 CCTTCGGGACTTA
1 CCTTCGGGACTTA
31087587 GCCTGGACAG
Statistics
Matches: 172, Mismatches: 29, Indels: 21
0.77 0.13 0.09
Matches are distributed among these distances:
38 2 0.01
39 48 0.28
40 110 0.64
41 12 0.07
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (38 bp):
CCTTCGGGACTTAACCCGGATTTAGTACTCGCACAATG
Found at i:31087553 original size:80 final size:78
Alignment explanation
Indices: 31087369--31087586 Score: 217
Period size: 80 Copynumber: 2.7 Consensus size: 78
31087359 GCTCCTCGTT
* * *
31087369 CAAATGCCTTCAGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCAGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGGA
31087434 TTTAATGACTCGCA
66 TTTAAT-ACTCGCA
* * * * * *
31087448 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCAGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACTTAACCCGG
31087513 AACTTGT-AT-CTCGCA
65 -A-TT-TAATACTCGCA
* * * * * *
31087528 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTA
1 CAAATGCCTTCAGGA-CTTAGCCCGGATTTAGTAACTCA-CACAAGGCCTTCGGGACTTA
31087587 GCCTGGACAG
Statistics
Matches: 113, Mismatches: 20, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
79 37 0.33
80 67 0.59
81 4 0.04
82 4 0.04
83 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCAGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGGA
TTTAATACTCGCA
Found at i:31090808 original size:60 final size:60
Alignment explanation
Indices: 31090730--31090852 Score: 219
Period size: 60 Copynumber: 2.0 Consensus size: 60
31090720 TTATTCATGC
* *
31090730 AATCTCCCTGTCTATCACAACTTTAATCAATAAACACACTTATTTCAAATCAATACCAAT
1 AATCTCCCTGTCAATCACAACTATAATCAATAAACACACTTATTTCAAATCAATACCAAT
*
31090790 AATCTCTCTGTCAATCACAACTATAATCAATAAACACACTTATTTCAAATCAATACCAAT
1 AATCTCCCTGTCAATCACAACTATAATCAATAAACACACTTATTTCAAATCAATACCAAT
31090850 AAT
1 AAT
31090853 AACAATAAAT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.42, C:0.25, G:0.02, T:0.31
Consensus pattern (60 bp):
AATCTCCCTGTCAATCACAACTATAATCAATAAACACACTTATTTCAAATCAATACCAAT
Found at i:31090973 original size:21 final size:20
Alignment explanation
Indices: 31090947--31091083 Score: 62
Period size: 21 Copynumber: 6.6 Consensus size: 20
31090937 GAAGCCTGAA
31090947 AGCTAAACAGAAGCTCATGAG
1 AGCTAAACAGAAGCTCAT-AG
* *
31090968 AGCTAAAAAGAA-CTCGTAAG
1 AGCTAAACAGAAGCTCAT-AG
* * * * *
31090988 AGTTGAATAGAAACCCATAAG
1 AGCTAAACAGAAGCTCAT-AG
* *
31091009 GGTTAAACAGAAGCTCAATAG
1 AGCTAAACAGAAGCTC-ATAG
* * *
31091030 AGATGAAC-GAAAACTCATATG
1 AGCTAAACAG-AAGCTCATA-G
* *
31091051 AGTTAAACAGAAGCTCGTGAG
1 AGCTAAACAGAAGCTCAT-AG
*
31091072 AACTAAACAGAA
1 AGCTAAACAGAA
31091084 AGTAAACATG
Statistics
Matches: 87, Mismatches: 23, Indels: 12
0.71 0.19 0.10
Matches are distributed among these distances:
20 19 0.22
21 64 0.74
22 4 0.05
ACGTcount: A:0.47, C:0.15, G:0.21, T:0.17
Consensus pattern (20 bp):
AGCTAAACAGAAGCTCATAG
Found at i:31093279 original size:48 final size:47
Alignment explanation
Indices: 31093174--31093309 Score: 164
Period size: 48 Copynumber: 2.9 Consensus size: 47
31093164 ACATGATAGG
* * * * * * *
31093174 ATGCCAATGCCATATCGCGGATATTGTCTTACATGGGATCCCTTATCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT-CCTGATCA
* *
31093222 ATGCTAATGCCATGTCCCAGACATGGTCTTACATGGGATCGTAGATCA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCCT-GATCA
*
31093270 ATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATC
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
31093310 ACATATTGTT
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
47 2 0.03
48 74 0.97
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (47 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCCTGATCA
Found at i:31097263 original size:40 final size:40
Alignment explanation
Indices: 31097208--31097418 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
31097198 ATTTGAATGA
*
31097208 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
*
31097248 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * *
31097288 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * *
31097328 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * * * * *
31097368 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
31097408 TATCC-GGCTAA
1 TATCCGGGCTAA
31097419 ATTCCGAAGA
Statistics
Matches: 156, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 7 0.04
40 146 0.94
41 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:31100618 original size:40 final size:40
Alignment explanation
Indices: 31100563--31100773 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
31100553 ATTTGAATGA
*
31100563 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
*
31100603 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * *
31100643 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * *
31100683 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * * * * *
31100723 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
31100763 TATCC-GGCTAA
1 TATCCGGGCTAA
31100774 ATTCCGAAGA
Statistics
Matches: 156, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 7 0.04
40 146 0.94
41 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:31105885 original size:48 final size:48
Alignment explanation
Indices: 31105734--31105961 Score: 182
Period size: 48 Copynumber: 4.9 Consensus size: 48
31105724 CACATGGTAG
* * **
31105734 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACCTATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCATGTATC
* * * * * *
31105782 AATGCTAATGCCATGTCTCAGACATGGTCTCACGTGGGATCGTAG-ATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAT-GTATC
* * ** *
31105830 GACGCCAATGCCATGTCCCAAACATGGTCTTACATGATATCATGTATT
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCATGTATC
*** * **
31105878 GATGCCAAT---A-G-CCCAG-CTATGGTCTTACATAAAATTAAATATC
1 GATGCCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCATGTATC
* *
31105921 GATGCCAAAGCCATGTCCCAGACATGGTCTTCCATGGGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
31105962 GTACATAACC
Statistics
Matches: 136, Mismatches: 35, Indels: 18
0.72 0.19 0.10
Matches are distributed among these distances:
42 1 0.01
43 31 0.23
44 1 0.01
45 1 0.01
46 1 0.01
47 2 0.01
48 98 0.72
49 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCATGTATC
Found at i:31109455 original size:27 final size:27
Alignment explanation
Indices: 31109425--31109482 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
31109415 GAAACGAACT
* *
31109425 ATTCCTTCAGCGTTCATCATATTTACC
1 ATTCCTTCAGAGTTCACCATATTTACC
**
31109452 ATTCCTTCAGAGTTTGCCATATTTACC
1 ATTCCTTCAGAGTTCACCATATTTACC
31109479 ATTC
1 ATTC
31109483 TTCCCTTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.28, G:0.09, T:0.41
Consensus pattern (27 bp):
ATTCCTTCAGAGTTCACCATATTTACC
Found at i:31109615 original size:27 final size:27
Alignment explanation
Indices: 31109581--31109681 Score: 150
Period size: 27 Copynumber: 3.7 Consensus size: 27
31109571 TCCGTAGATC
31109581 GCCACAAAGGCTTCCATTTCATAAATT
1 GCCACAAAGGCTTCCATTTCATAAATT
* *
31109608 GCCACAAAGGCTTCTATTTCATAAGTT
1 GCCACAAAGGCTTCCATTTCATAAATT
* *
31109635 GCCATAAA-GCTTCCATTTCATATATTT
1 GCCACAAAGGCTTCCATTTCATA-AATT
31109662 GCCACAAAGGCTTCCATTTC
1 GCCACAAAGGCTTCCATTTC
31109682 TTCAGTGTGT
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
26 13 0.20
27 42 0.64
28 11 0.17
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.33
Consensus pattern (27 bp):
GCCACAAAGGCTTCCATTTCATAAATT
Found at i:31111022 original size:29 final size:29
Alignment explanation
Indices: 31110989--31111045 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
31110979 AGTATATGCT
*
31110989 CAGGCATCAATTAGGTGAATAGGATCGCG
1 CAGGCATCAATTAGGCGAATAGGATCGCG
31111018 CAGGCATCAATTAGGCGAATAGGATCGC
1 CAGGCATCAATTAGGCGAATAGGATCGC
31111046 ACCACTCAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.32, C:0.19, G:0.30, T:0.19
Consensus pattern (29 bp):
CAGGCATCAATTAGGCGAATAGGATCGCG
Found at i:31115117 original size:39 final size:40
Alignment explanation
Indices: 31115074--31115196 Score: 144
Period size: 40 Copynumber: 3.1 Consensus size: 40
31115064 CCTTCGGGGT
* *
31115074 TTAG-CCGGATATAGCT-TCTCGCTCAAATACCTTCAGGAC
1 TTAGCCCGGATATAG-TAACTCGCACAAATACCTTCAGGAC
* * * *
31115113 TTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATACCTTCAGGAC
* *
31115153 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGGC
1 TTAGCCCGGATATAGTAACTCGCACAAATACCTTCAGGAC
31115192 TTAGC
1 TTAGC
31115197 TCGGTTATCA
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
39 13 0.18
40 60 0.82
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATACCTTCAGGAC
Found at i:31115147 original size:40 final size:39
Alignment explanation
Indices: 31115091--31115204 Score: 156
Period size: 40 Copynumber: 2.9 Consensus size: 39
31115081 GATATAGCTT
* *
31115091 CTCGCTCAAATACCTTCAGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTC-GGACTTAGCCCGGTTATAGTAA
* *
31115131 CTCGCACAATTGCCTTCGGGACTTAGCCCGGATATAGTAA
1 CTCGCACAAATGCCTTC-GGACTTAGCCCGGTTATAGTAA
* *
31115171 CTCGCACAAATGCCTTCGGGCTTAGCTCGGTTAT
1 CTCGCACAAATGCCTTCGGACTTAGCCCGGTTAT
31115205 CAATCCGAAT
Statistics
Matches: 65, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 14 0.22
40 51 0.78
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (39 bp):
CTCGCACAAATGCCTTCGGACTTAGCCCGGTTATAGTAA
Found at i:31123097 original size:39 final size:40
Alignment explanation
Indices: 31123043--31123175 Score: 182
Period size: 40 Copynumber: 3.4 Consensus size: 40
31123033 AAACCAAGTA
** * *
31123043 CCTTCGGGGTTTAG-CCGGATATAGCT-TCTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
31123082 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
31123122 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
31123162 CCTTCGGG-CTTAGC
1 CCTTCGGGACTTAGC
31123176 TCGGTTATCA
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
39 19 0.23
40 65 0.77
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:31123124 original size:40 final size:40
Alignment explanation
Indices: 31123070--31123183 Score: 185
Period size: 40 Copynumber: 2.9 Consensus size: 40
31123060 GATATAGCTT
*
31123070 CTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
31123110 CTCGCACAATTGCCTTCGGGACTTAGCCCGGATATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
31123150 CTCGCACAAATGCCTTCGGG-CTTAGCTCGGTTAT
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
31123184 CAATCTGAAT
Statistics
Matches: 68, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 12 0.18
40 56 0.82
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
Found at i:31126794 original size:15 final size:15
Alignment explanation
Indices: 31126757--31126785 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
31126747 TTTTCCTATC
31126757 TAATAATAATAATTA
1 TAATAATAATAATTA
31126772 TAATAATAATAATT
1 TAATAATAATAATT
31126786 TTATAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TAATAATAATAATTA
Found at i:31128710 original size:40 final size:40
Alignment explanation
Indices: 31128659--31128947 Score: 173
Period size: 40 Copynumber: 7.6 Consensus size: 40
31128649 AAAGTTTGCA
* * *
31128659 CCCAGCGCTAGTCAGATAAACCGAAGATATTAAAGGTGTG
1 CCCAGCACTAGTCGGATAAACCGAAAATATTAAAGGTGTG
* * * *
31128699 CCCAGCACTAGTTGGAT-AACTGACAAAGATT-----TGCG
1 CCCAGCACTAGTCGGATAAACCGA-AAATATTAAAGGTGTG
*
31128734 CCCAGCGCTAGTCGGATAAACCGAAAATATTAAAGGTGTG
1 CCCAGCACTAGTCGGATAAACCGAAAATATTAAAGGTGTG
* *
31128774 CCCAGCACTAGTCGGAT-AACTGAAAAATATT-----TGCG
1 CCCAGCACTAGTCGGATAAACCG-AAAATATTAAAGGTGTG
** ** * ** ** *
31128809 CATAGTGCTAGTTGGATAAAATGACTATATTAAAGGTGCG
1 CCCAGCACTAGTCGGATAAACCGAAAATATTAAAGGTGTG
* * *
31128849 CCCAGCACTAGTCGAAT-AACTGAAAAAGATT-----TGTG
1 CCCAGCACTAGTCGGATAAACCG-AAAATATTAAAGGTGTG
* **
31128884 CCCAGCGCTAGTCGGATAAACCGACGATATTAAAGGTGTG
1 CCCAGCACTAGTCGGATAAACCGAAAATATTAAAGGTGTG
* *
31128924 CCTAGCACTAGTCGGATAAGCCGA
1 CCCAGCACTAGTCGGATAAACCGA
31128948 CAAGCACATA
Statistics
Matches: 185, Mismatches: 43, Indels: 42
0.69 0.16 0.16
Matches are distributed among these distances:
35 68 0.37
36 13 0.07
39 13 0.07
40 91 0.49
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (40 bp):
CCCAGCACTAGTCGGATAAACCGAAAATATTAAAGGTGTG
Found at i:31128744 original size:75 final size:75
Alignment explanation
Indices: 31128649--31128942 Score: 410
Period size: 75 Copynumber: 3.9 Consensus size: 75
31128639 AAACCATAAC
* * *
31128649 AAAG-TTTGCACCCAGCGCTAGTCAGATAAACCGAAGATATTAAAGGTGTGCCCAGCACTAGTTG
1 AAAGATTTGCGCCCAGCGCTAGTCGGATAAACCGAAGATATTAAAGGTGTGCCCAGCACTAGTCG
*
31128713 GATAACTGAC
66 GATAACTGAA
*
31128723 AAAGATTTGCGCCCAGCGCTAGTCGGATAAACCGAAAATATTAAAGGTGTGCCCAGCACTAGTCG
1 AAAGATTTGCGCCCAGCGCTAGTCGGATAAACCGAAGATATTAAAGGTGTGCCCAGCACTAGTCG
31128788 GATAACTGAA
66 GATAACTGAA
* ** * * ** ** *
31128798 AAATATTTGCGCATAGTGCTAGTTGGATAAAATGACTATATTAAAGGTGCGCCCAGCACTAGTCG
1 AAAGATTTGCGCCCAGCGCTAGTCGGATAAACCGAAGATATTAAAGGTGTGCCCAGCACTAGTCG
*
31128863 AATAACTGAA
66 GATAACTGAA
* * *
31128873 AAAGATTTGTGCCCAGCGCTAGTCGGATAAACCGACGATATTAAAGGTGTGCCTAGCACTAGTCG
1 AAAGATTTGCGCCCAGCGCTAGTCGGATAAACCGAAGATATTAAAGGTGTGCCCAGCACTAGTCG
31128938 GATAA
66 GATAA
31128943 GCCGACAAGC
Statistics
Matches: 191, Mismatches: 28, Indels: 1
0.87 0.13 0.00
Matches are distributed among these distances:
74 4 0.02
75 187 0.98
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (75 bp):
AAAGATTTGCGCCCAGCGCTAGTCGGATAAACCGAAGATATTAAAGGTGTGCCCAGCACTAGTCG
GATAACTGAA
Found at i:31128745 original size:35 final size:35
Alignment explanation
Indices: 31128698--31128902 Score: 126
Period size: 35 Copynumber: 5.6 Consensus size: 35
31128688 TTAAAGGTGT
* *
31128698 GCCCAGCACTAGTTGGATAACTGACAAAGATTTGC
1 GCCCAGCACTAGTCGGATAACTGAAAAAGATTTGC
* * * *
31128733 GCCCAGCGCTAGTCGGATAAACCG-AAAATATTAAAGGTGT
1 GCCCAGCACTAGTCGGAT-AACTGAAAAAGATT-----TGC
*
31128773 GCCCAGCACTAGTCGGATAACTGAAAAATATTTGC
1 GCCCAGCACTAGTCGGATAACTGAAAAAGATTTGC
** ** * * **
31128808 GCATAGTGCTAGTTGGATAAAATGACTATATTAA-AGGTGC
1 GCCCAGCACTAGTCGGAT-AACTGA--A-A--AAGATTTGC
* *
31128848 GCCCAGCACTAGTCGAATAACTGAAAAAGATTTGT
1 GCCCAGCACTAGTCGGATAACTGAAAAAGATTTGC
*
31128883 GCCCAGCGCTAGTCGGATAA
1 GCCCAGCACTAGTCGGATAA
31128903 ACCGACGATA
Statistics
Matches: 127, Mismatches: 29, Indels: 28
0.69 0.16 0.15
Matches are distributed among these distances:
34 2 0.02
35 58 0.46
36 10 0.08
37 1 0.01
38 1 0.01
39 10 0.08
40 43 0.34
41 2 0.02
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (35 bp):
GCCCAGCACTAGTCGGATAACTGAAAAAGATTTGC
Found at i:31131746 original size:53 final size:52
Alignment explanation
Indices: 31131666--31131886 Score: 163
Period size: 53 Copynumber: 4.1 Consensus size: 52
31131656 AGGATACACG
* * * *
31131666 GGTATCTTTCCTTTTTAAACTTACCATTGTCATGTCTTGACATGGTCTTACGT
1 GGTATCTTTCC-TTATGAACTTACCATTGCCATGTCTTGACATGGTCTTACAT
* * * *
31131719 GGTATCCTTTCCTTATGAACTCACCATTGCCTTGCCTTGGCATGGTCTTACAT
1 GGTAT-CTTTCCTTATGAACTTACCATTGCCATGTCTTGACATGGTCTTACAT
* ** * *
31131772 GGGATCTTTGCCTTATCGTAGTTTATCAATGCCATGTCTTGACATGGTCTTACAT
1 GGTATCTTT-CCTTAT-G-AACTTACCATTGCCATGTCTTGACATGGTCTTACAT
** * * * * * * * * *
31131827 AATTTCCTTGCCTTGTAAAACTTACCAATGCCATGCCTTGGCATGGTCTAACTT
1 GGTAT-CTTTCCTTAT-GAACTTACCATTGCCATGTCTTGACATGGTCTTACAT
31131881 GGTATC
1 GGTATC
31131887 CTTAAACCCT
Statistics
Matches: 128, Mismatches: 35, Indels: 10
0.74 0.20 0.06
Matches are distributed among these distances:
52 4 0.03
53 49 0.38
54 38 0.30
55 34 0.27
56 3 0.02
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.39
Consensus pattern (52 bp):
GGTATCTTTCCTTATGAACTTACCATTGCCATGTCTTGACATGGTCTTACAT
Found at i:31135925 original size:29 final size:29
Alignment explanation
Indices: 31135841--31135945 Score: 92
Period size: 29 Copynumber: 3.7 Consensus size: 29
31135831 TACATACATG
* **
31135841 CATATGGCCCACTAGGCCC-A-TCTTATT
1 CATATAGCCCACTAGGCCCAATTCAAATT
* * *
31135868 CAAATGGCCCATCTA--CCCAATTCATATT
1 CATATAGCCCA-CTAGGCCCAATTCAAATT
*
31135896 CTTATAGCCCACTAGGCCCAATTCAAATT
1 CATATAGCCCACTAGGCCCAATTCAAATT
* *
31135925 CATATGGCCCATTAGGCCCAA
1 CATATAGCCCACTAGGCCCAA
31135946 ATAATATTAT
Statistics
Matches: 64, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 3 0.05
27 14 0.22
28 17 0.27
29 30 0.47
ACGTcount: A:0.29, C:0.32, G:0.12, T:0.27
Consensus pattern (29 bp):
CATATAGCCCACTAGGCCCAATTCAAATT
Found at i:31136059 original size:19 final size:19
Alignment explanation
Indices: 31136035--31136072 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
31136025 CAGCCCATCA
*
31136035 GGCCCATTTAGCCTATTCT
1 GGCCCATTTAGCCAATTCT
*
31136054 GGCCCATTTGGCCAATTCT
1 GGCCCATTTAGCCAATTCT
31136073 CAACCCAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.16, C:0.32, G:0.18, T:0.34
Consensus pattern (19 bp):
GGCCCATTTAGCCAATTCT
Found at i:31162390 original size:6 final size:6
Alignment explanation
Indices: 31162372--31162459 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
31162362 AAGAAACATT
*
31162372 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
31162421 ATCAAA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
31162460 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 53 0.80
7 7 0.11
8 2 0.03
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:31162393 original size:18 final size:18
Alignment explanation
Indices: 31162372--31162459 Score: 74
Period size: 19 Copynumber: 4.8 Consensus size: 18
31162362 AAGAAACATT
31162372 ATCAGAA-CTAGAATCAGA
1 ATCAGAATC-AGAATCAGA
31162390 ATCAGAATCAGAATCAG-
1 ATCAGAATCAGAATCAGA
* *
31162407 GTGACAGAATCAGAATCAAA
1 AT--CAGAATCAGAATCAGA
*
31162427 ATCAGTATCAGGTAA-CAGA
1 ATCAGAATCA-G-AATCAGA
*
31162446 ATCAAAATCAGAAT
1 ATCAGAATCAGAAT
31162460 GTGAATGCAA
Statistics
Matches: 56, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
17 3 0.05
18 23 0.41
19 27 0.48
20 3 0.05
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.18
Consensus pattern (18 bp):
ATCAGAATCAGAATCAGA
Found at i:31162419 original size:31 final size:31
Alignment explanation
Indices: 31162381--31162459 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
31162371 TATCAGAACT
*
31162381 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
31162412 AGAATCAGAATCAAAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
31162443 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
31162460 GTGAATGCAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:31162886 original size:27 final size:28
Alignment explanation
Indices: 31162824--31162887 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 28
31162814 CAATCACTTG
31162824 CCCACAAGGGCAAAATAGTCAATTAACA
1 CCCACAAGGGCAAAATAGTCAATTAACA
* * *
31162852 CCC-TAAGGGCAAACTAGT-AATTTTAC-
1 CCCACAAGGGCAAAATAGTCAA-TTAACA
31162878 CCCACAAGGG
1 CCCACAAGGG
31162888 TATCTCGATA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
26 5 0.17
27 22 0.73
28 3 0.10
ACGTcount: A:0.39, C:0.27, G:0.17, T:0.17
Consensus pattern (28 bp):
CCCACAAGGGCAAAATAGTCAATTAACA
Found at i:31162963 original size:53 final size:54
Alignment explanation
Indices: 31162871--31163026 Score: 219
Period size: 53 Copynumber: 2.9 Consensus size: 54
31162861 CAAACTAGTA
* * * *
31162871 ATTT-TACCCCACAAGGGTATCTCGATAATTCTACTCTACAGGGGTATTTC-GAT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAG-T
31162924 ATTTCTACCCTACAAGGG-ATTTCGGTAATTCTACCCTACAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGT
* * *
31162977 AATTCTACCCTACAAGGGTATTTTGGTAATTCTACCCTACAAGGGTATTT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
31163027 TGGTAATTTC
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
53 51 0.55
54 42 0.45
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (54 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGT
Found at i:31163010 original size:80 final size:81
Alignment explanation
Indices: 31162868--31163034 Score: 221
Period size: 80 Copynumber: 2.1 Consensus size: 81
31162858 GGGCAAACTA
* * * *
31162868 GTAATTTTACCCCACAAGGGTATCTCGATAATTCTACTCTACAGGGGTATTTCGATATTTCTACC
1 GTAATTCTACCCCACAAGGGTATCTCGATAATTCTACCCTACAAGGGTATTTCGATAATTCTACC
31162933 CTACAAGGG-ATTTCG
66 CTACAAGGGTATTTCG
* * * * *
31162948 GTAATTCTACCCTACAGGGGTATTTC-AGTAATTCTACCCTACAAGGGTATTTTGGTAATTCTAC
1 GTAATTCTACCCCACAAGGGTATCTCGA-TAATTCTACCCTACAAGGGTATTTCGATAATTCTAC
*
31163012 CCTACAAGGGTATTTTG
65 CCTACAAGGGTATTTCG
31163029 GTAATT
1 GTAATT
31163035 TCACAAATTA
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
79 1 0.01
80 63 0.84
81 11 0.15
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.35
Consensus pattern (81 bp):
GTAATTCTACCCCACAAGGGTATCTCGATAATTCTACCCTACAAGGGTATTTCGATAATTCTACC
CTACAAGGGTATTTCG
Found at i:31163027 original size:27 final size:27
Alignment explanation
Indices: 31162868--31163034 Score: 219
Period size: 27 Copynumber: 6.2 Consensus size: 27
31162858 GGGCAAACTA
* * *
31162868 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
* * *
31162895 ATAATTCTACTCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
* *
31162922 ATATTTCTACCCTACAAGGG-ATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCG
* *
31162948 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCG
*
31162975 GTAATTCTACCCTACAAGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCG
*
31163002 GTAATTCTACCCTACAAGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCG
31163029 GTAATT
1 GTAATT
31163035 TCACAAATTA
Statistics
Matches: 123, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
26 23 0.19
27 100 0.81
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCG
Found at i:31163090 original size:27 final size:27
Alignment explanation
Indices: 31162992--31163117 Score: 121
Period size: 27 Copynumber: 4.7 Consensus size: 27
31162982 TACCCTACAA
* ** *
31162992 GGGTATTTTGGTAATTCTACCCTAC-AA
1 GGGTATTTTGGTAATTTTA-CAAACTAG
* *
31163019 GGGTATTTTGGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
31163046 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* *** *
31163073 GGGTATTTTGGTAGTTTTATTGA-TCG
1 GGGTATTTTGGTAATTTTACAAACTAG
31163099 AGGGTATTTTGGTAATTTT
1 -GGGTATTTTGGTAATTTT
31163118 GTAAACCAAT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
26 4 0.05
27 79 0.95
ACGTcount: A:0.25, C:0.08, G:0.24, T:0.44
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:31163131 original size:27 final size:27
Alignment explanation
Indices: 31162989--31163158 Score: 117
Period size: 27 Copynumber: 6.3 Consensus size: 27
31162979 TTCTACCCTA
* ***
31162989 CAAGGGTATTTTGGTAATTCTACCCTA-
1 CAAGGGTATTTTGGTAATTTTA-TAAAC
* * *
31163016 CAAGGGTATTTTGGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
31163043 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * ** *
31163070 TAGGGGTATTTTGGTAGTTTTATTGAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
31163097 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* ** *
31163124 CAATGGTATTTCAGTAATTTTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
31163151 CGAGGGTA
1 CAAGGGTA
31163159 AAACCGTAAT
Statistics
Matches: 113, Mismatches: 29, Indels: 2
0.78 0.20 0.01
Matches are distributed among these distances:
26 2 0.02
27 111 0.98
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:31163132 original size:54 final size:54
Alignment explanation
Indices: 31162991--31163158 Score: 142
Period size: 54 Copynumber: 3.1 Consensus size: 54
31162981 CTACCCTACA
* ** ** * * *
31162991 AGGGTATTTTGGTAATTCTACCCTA-CAAGGGTATTTTGGTAATTTCACAAAT-T
1 AGGGTATTTTGGTAATTTTA-CAAACCAAGGGTATTTCAGTAATTTTATAAATCG
* * ** * **
31163044 AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAGTTTTATTGATCG
1 A-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTTATAAATCG
** *
31163099 AGGGTATTTTGGTAATTTTGTAAACCAATGGTATTTCAGTAATTTTATAAATCG
1 AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTTATAAATCG
31163153 AGGGTA
1 AGGGTA
31163159 AAACCGTAAT
Statistics
Matches: 91, Mismatches: 21, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
53 3 0.03
54 87 0.96
55 1 0.01
ACGTcount: A:0.28, C:0.08, G:0.23, T:0.41
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTTATAAATCG
Found at i:31163167 original size:27 final size:27
Alignment explanation
Indices: 31163137--31163374 Score: 341
Period size: 27 Copynumber: 8.8 Consensus size: 27
31163127 TGGTATTTCA
* *
31163137 GTAATTTTATAAATCGAGGGTAAAACC
1 GTAATTCTATAAATCGAGGGTAAAACG
*
31163164 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
31163191 GTAATTCTGTAAATTGAGGGTAAGACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
31163218 GTAATTCTATAAATCGAGGATAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
31163245 GTAATTCTATAATTCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
31163272 GTAATTCTATAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
31163299 ATAATTCTATAAATCGAGGGTAAAGCG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
31163326 GTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
31163353 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
31163375 CTTTGGTAAT
Statistics
Matches: 186, Mismatches: 25, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 186 1.00
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:31163383 original size:27 final size:27
Alignment explanation
Indices: 31163137--31163401 Score: 323
Period size: 27 Copynumber: 9.8 Consensus size: 27
31163127 TGGTATTTCA
* **
31163137 GTAATTTTATAAATCGAGGGTAAAACC
1 GTAATTCTATAAATCGAGGGTAAAATG
31163164 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * **
31163191 GTAATTCTGTAAATTGAGGGTAAGACA
1 GTAATTCTATAAATCGAGGGTAAAATG
*
31163218 GTAATTCTATAAATCGAGGATAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
31163245 GTAATTCTATAATTCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
31163272 GTAATTCTATAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* **
31163299 ATAATTCTATAAATCGAGGGTAAAGCG
1 GTAATTCTATAAATCGAGGGTAAAATG
**
31163326 GTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAATG
***
31163353 GTAATTCTATAAATCGAGGGTACTTTG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
31163380 GTAATTTTACAAGTCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
31163402 TTTTAGTAAT
Statistics
Matches: 205, Mismatches: 33, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 205 1.00
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:31163410 original size:27 final size:27
Alignment explanation
Indices: 31163352--31163413 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
31163342 AGGGTAAAAC
* *
31163352 AGTAATTCTATAAATCGAGGGTACTTT
1 AGTAATTTTACAAATCGAGGGTACTTT
* * *
31163379 GGTAATTTTACAAGTCGAGGGTATTTT
1 AGTAATTTTACAAATCGAGGGTACTTT
31163406 AGTAATTT
1 AGTAATTT
31163414 GGTAAACTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
AGTAATTTTACAAATCGAGGGTACTTT
Found at i:31165536 original size:10 final size:11
Alignment explanation
Indices: 31165513--31165550 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
31165503 TGAATTGGAC
31165513 TAAATTGAGT-T
1 TAAATTGA-TAT
31165524 TAAATTG-TAT
1 TAAATTGATAT
31165534 TAAATTGATAT
1 TAAATTGATAT
31165545 TAAATT
1 TAAATT
31165551 TACTCGTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 1 0.04
10 8 0.32
11 16 0.64
ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47
Consensus pattern (11 bp):
TAAATTGATAT
Found at i:31167633 original size:42 final size:42
Alignment explanation
Indices: 31167585--31167694 Score: 132
Period size: 43 Copynumber: 2.6 Consensus size: 42
31167575 GACTACGTGA
* **
31167585 AAGACCATATCTGGGATATGGCATCAATATGAGACTT-TGTGT
1 AAGACCATATCTGGGATATGGCATCAATACGAGA-TTACATGT
* * **
31167627 AAGACCATAGCTGGGCTATTGGCATTGATACGAGATTACATGT
1 AAGACCATATCTGGGATA-TGGCATCAATACGAGATTACATGT
31167670 AAGACCATATCTGGGATATGGCATC
1 AAGACCATATCTGGGATATGGCATC
31167695 GGTATGGTAC
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
42 24 0.43
43 32 0.57
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (42 bp):
AAGACCATATCTGGGATATGGCATCAATACGAGATTACATGT
Found at i:31173086 original size:27 final size:27
Alignment explanation
Indices: 31173032--31173142 Score: 100
Period size: 27 Copynumber: 4.1 Consensus size: 27
31173022 AGCATGGCTG
*** *
31173032 CCAGAACAGATAA-TGTGATTGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
31173058 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* *
31173085 CCAGAACAGGT-ATATGTGGTAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * * * *
31173112 CCATATCAAATAAATGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
31173139 CCAG
1 CCAG
31173143 GACGCTTCCT
Statistics
Matches: 68, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
26 15 0.22
27 52 0.76
28 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:31173130 original size:54 final size:53
Alignment explanation
Indices: 31173032--31173142 Score: 132
Period size: 54 Copynumber: 2.1 Consensus size: 53
31173022 AGCATGGCTG
* * * *
31173032 CCAGAACAGATAATGTGATTGAGTCACCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATGTGATAGAGCCACCAGAACAAATAAATGTGGCAGAGCCA
* * * * *
31173085 CCAGAACAGGTATATGTGGTAGAGCCACCATATCAAATAAATGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGATAGAGCCACCAGAACAAATAAATGTGGCAGAGCCA
31173139 CCAG
1 CCAG
31173143 GACGCTTCCT
Statistics
Matches: 48, Mismatches: 9, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
53 11 0.23
54 37 0.77
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (53 bp):
CCAGAACAGATAATGTGATAGAGCCACCAGAACAAATAAATGTGGCAGAGCCA
Found at i:31174355 original size:16 final size:16
Alignment explanation
Indices: 31174330--31174362 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
31174320 CTAAAAGAAA
31174330 AAGAAAAGATGAGCAG
1 AAGAAAAGATGAGCAG
*
31174346 AAGAAGAGATGAGCAG
1 AAGAAAAGATGAGCAG
31174362 A
1 A
31174363 GAATTCAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.55, C:0.06, G:0.33, T:0.06
Consensus pattern (16 bp):
AAGAAAAGATGAGCAG
Found at i:31180790 original size:26 final size:26
Alignment explanation
Indices: 31180760--31180870 Score: 132
Period size: 27 Copynumber: 4.2 Consensus size: 26
31180750 AGCATGGCTG
* *
31180760 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
31180786 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
* * *
31180813 CCAGAGCAGGTATATGTGGTAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
31180840 CCAGATCAGATAAATGTGGCATAGCCA
1 CCAGAACAGAT-AATGTGGCAGAGCCA
31180867 CCAG
1 CCAG
31180871 GACACTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 13 0.18
27 58 0.79
28 2 0.03
ACGTcount: A:0.36, C:0.22, G:0.26, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:31182083 original size:16 final size:16
Alignment explanation
Indices: 31182058--31182090 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
31182048 CTAAAAGAAA
31182058 AAGAAAAGATGAGCAG
1 AAGAAAAGATGAGCAG
*
31182074 AAGAAGAGATGAGCAG
1 AAGAAAAGATGAGCAG
31182090 A
1 A
31182091 GAATTCAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.55, C:0.06, G:0.33, T:0.06
Consensus pattern (16 bp):
AAGAAAAGATGAGCAG
Found at i:31182332 original size:24 final size:24
Alignment explanation
Indices: 31182305--31182378 Score: 112
Period size: 24 Copynumber: 3.1 Consensus size: 24
31182295 TAATTTCTTC
*
31182305 CCCTTATCAGCTCCAAAATCCTCT
1 CCCTTATCAGCTCCTAAATCCTCT
*
31182329 CCCTTATCAGCTCCTAAATCCTAT
1 CCCTTATCAGCTCCTAAATCCTCT
* *
31182353 CCCTTATCAACTCCTAAATCCCCT
1 CCCTTATCAGCTCCTAAATCCTCT
31182377 CC
1 CC
31182379 TGGCAGACTT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.24, C:0.43, G:0.03, T:0.30
Consensus pattern (24 bp):
CCCTTATCAGCTCCTAAATCCTCT
Found at i:31185350 original size:14 final size:14
Alignment explanation
Indices: 31185331--31185357 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
31185321 TATGCAGAGC
31185331 ACCTACAGATGATT
1 ACCTACAGATGATT
31185345 ACCTACAGATGAT
1 ACCTACAGATGAT
31185358 AACATTGCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.26
Consensus pattern (14 bp):
ACCTACAGATGATT
Found at i:31190092 original size:40 final size:40
Alignment explanation
Indices: 31190037--31190308 Score: 404
Period size: 40 Copynumber: 6.8 Consensus size: 40
31190027 CGGATGATAA
** * *
31190037 CCGGGCTAAGTCCCGAAGGCATTTGTGCTTGTGACTCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
31190077 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
*
31190117 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
*
31190157 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAGTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* *
31190197 TCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-T
**
31190237 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-T
* *
31190277 CCAGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
31190309 GGCTATATCC
Statistics
Matches: 213, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 2 0.01
40 211 0.99
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
Found at i:31199230 original size:40 final size:40
Alignment explanation
Indices: 31199080--31199290 Score: 241
Period size: 40 Copynumber: 5.3 Consensus size: 40
31199070 CATTTGAATG
* * *
31199080 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * * *
31199120 TTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
*
31199160 TTATCCGGGCTAAGA-CCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
*
31199199 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* * * ** *
31199239 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
31199279 ATATCC-GGCTAA
1 ATATCCGGGCTAA
31199291 ATTCCGAAGA
Statistics
Matches: 154, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
39 39 0.25
40 115 0.75
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:31199298 original size:79 final size:80
Alignment explanation
Indices: 31199084--31199299 Score: 233
Period size: 79 Copynumber: 2.7 Consensus size: 80
31199074 TGAATGATAT
* * * * *
31199084 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAATCCCGAAGGCATTTA
* * * *
31199149 TGCTAGTGATTTTAT
66 TGCGAGTGACTATAC
* * *
31199164 CCGGGCTAAGA-CCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGA-CCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAA-ATCCCGAAGGCATTT
*
31199227 GTGCGAGTTG-CTATAC
65 ATGCGAG-TGACTATAC
* * * *
31199243 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAAATTCCGAAG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAATCCCGAAG
31199300 AAACTTGGGT
Statistics
Matches: 112, Mismatches: 20, Indels: 9
0.79 0.14 0.06
Matches are distributed among these distances:
78 1 0.01
79 74 0.66
80 37 0.33
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAATCCCGAAGGCATTTA
TGCGAGTGACTATAC
Found at i:31202895 original size:16 final size:16
Alignment explanation
Indices: 31202874--31202906 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
31202864 TGTTTTCAAA
31202874 GATAGATTTGAGATCG
1 GATAGATTTGAGATCG
31202890 GATAGATTTGAGATCG
1 GATAGATTTGAGATCG
31202906 G
1 G
31202907 GTTATTTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.06, G:0.33, T:0.30
Consensus pattern (16 bp):
GATAGATTTGAGATCG
Found at i:31207258 original size:40 final size:40
Alignment explanation
Indices: 31207135--31207344 Score: 223
Period size: 40 Copynumber: 5.3 Consensus size: 40
31207125 CATTTGAATG
* * *
31207135 ATATCCGGGCTAAGTCCCGAA-GCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * * * *
31207174 TTATCC-GGCCAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
*
31207213 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
*
31207253 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* * * ** *
31207293 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
31207333 ATATCC-GGCTAA
1 ATATCCGGGCTAA
31207345 ATTCTGAAGA
Statistics
Matches: 151, Mismatches: 15, Indels: 10
0.86 0.09 0.06
Matches are distributed among these distances:
38 13 0.09
39 36 0.24
40 99 0.66
41 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:31208783 original size:47 final size:47
Alignment explanation
Indices: 31208711--31209063 Score: 553
Period size: 47 Copynumber: 7.5 Consensus size: 47
31208701 GGGTGTTACA
* * *
31208711 GTGAAAGTGTATATAGGTGACAAGGCCTAATGGCCAATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAAT
*
31208758 GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGAGGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAAT
31208805 GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAAT
* * *
31208852 GTGAAAGTGTATATATGTGACAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAAT
* *
31208899 GTGGAAGTGTATATATGTGATAAGGTCGAATGGCCAATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAAT
* * * * *
31208946 GTGAAAGTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGAT
1 GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAAT
* *
31208993 GTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGAT
1 GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAAT
*
31209040 GTGAAAGTGTATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
31209064 TCCCGAAGGG
Statistics
Matches: 279, Mismatches: 27, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 279 1.00
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.27
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAAT
Found at i:31209976 original size:135 final size:134
Alignment explanation
Indices: 31209663--31209938 Score: 464
Period size: 135 Copynumber: 2.0 Consensus size: 134
31209653 AATTGGTGAA
* **
31209663 GAATGTGCTTACCATGTGAATCCATCTTCAATTGATGAAGAATGTGCTTTGGAAATATTCGACCA
1 GAATGAGCTTACCATGTGAATCCATCAACAATTGA-GAAGAATGTGCTTTGGAAATATTCGACCA
31209728 TCTAGATCACTATTGTACGAAAGTATATATATGTGAGAGTTAAGTGATGCGTTTATTGATATTAT
65 TCTAGATCACTATTGTACGAAAGTATATATATGTGAGAGTTAAGTGATGCGTTTATTGATATTAT
31209793 AGTTC
130 AGTTC
* **
31209798 GAATGTGCTTACCATGTGAATCCATCTTCAATTGATGAAGAATGTGCTTTGGAAATATTCGACCA
1 GAATGAGCTTACCATGTGAATCCATCAACAATTGA-GAAGAATGTGCTTTGGAAATATTCGACCA
31209863 TCTAGATCACTATTGTACG-AAGTATATATATGTGAGAGTTAAGTGATGCGTTTATTGATATTAT
65 TCTAGATCACTATTGTACGAAAGTATATATATGTGAGAGTTAAGTGATGCGTTTATTGATATTAT
31209927 AGTTC
130 AGTTC
31209932 GAGATGA
1 GA-ATGA
31209939 AGCTCTAGAT
Statistics
Matches: 139, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
134 52 0.37
135 87 0.63
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.36
Consensus pattern (134 bp):
GAATGAGCTTACCATGTGAATCCATCAACAATTGAGAAGAATGTGCTTTGGAAATATTCGACCAT
CTAGATCACTATTGTACGAAAGTATATATATGTGAGAGTTAAGTGATGCGTTTATTGATATTATA
GTTC
Found at i:31210566 original size:8 final size:8
Alignment explanation
Indices: 31210539--31210577 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
31210529 ATAGCCAAAC
31210539 TTTCGGCA
1 TTTCGGCA
* *
31210547 TTTCAGCT
1 TTTCGGCA
31210555 TTTCGGCA
1 TTTCGGCA
31210563 TTTCGGCA
1 TTTCGGCA
*
31210571 ATTCGGC
1 TTTCGGC
31210578 TTTTGCCGAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.13, C:0.26, G:0.23, T:0.38
Consensus pattern (8 bp):
TTTCGGCA
Found at i:31211682 original size:16 final size:16
Alignment explanation
Indices: 31211657--31211688 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
31211647 AAGTTTGAAA
*
31211657 TTTCGGGATTTTTGGG
1 TTTCGAGATTTTTGGG
31211673 TTTCGAGATTTTTGGG
1 TTTCGAGATTTTTGGG
31211689 GCATTACAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.34, T:0.50
Consensus pattern (16 bp):
TTTCGAGATTTTTGGG
Found at i:31216310 original size:40 final size:40
Alignment explanation
Indices: 31216156--31216301 Score: 215
Period size: 40 Copynumber: 3.6 Consensus size: 40
31216146 TGAGGAATGT
* *
31216156 TATCTGGGCTTAAAGACCCACAGGCTTCATGCTGGAATTG
1 TATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAATTG
* *
31216196 TATCCGGGCTTAAAGACCTGTAGGCTGT-ATGCTGGAA-TG
1 TATCCGGGCTTAAAGACCCGCAGGCT-TCATGCTGGAATTG
31216235 TTATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAATTG
1 -TATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAATTG
*
31216276 TATCCGGGCTTAAAGACTCGCAGGCT
1 TATCCGGGCTTAAAGACCCGCAGGCT
31216302 ACGAGCTGGT
Statistics
Matches: 95, Mismatches: 7, Indels: 8
0.86 0.06 0.07
Matches are distributed among these distances:
39 3 0.03
40 89 0.94
41 3 0.03
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAATTG
Found at i:31216310 original size:80 final size:80
Alignment explanation
Indices: 31216149--31216301 Score: 263
Period size: 80 Copynumber: 1.9 Consensus size: 80
31216139 TGACACTTGA
*
31216149 GGAATGTTATCTGGGCTTAAAGACCCACAGGCTTCATGCTGGAATTGTATCCGGGCTTAAAGACC
1 GGAATGTTATCCGGGCTTAAAGACCCACAGGCTTCATGCTGGAATTGTATCCGGGCTTAAAGACC
*
31216214 TGTAGGCTGTATGCT
66 TGCAGGCTGTATGCT
*
31216229 GGAATGTTATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAATTGTATCCGGGCTTAAAGA-C
1 GGAATGTTATCCGGGCTTAAAGACCCACAGGCTTCATGCTGGAATTGTATCCGGGCTTAAAGACC
31216293 TCGCAGGCT
66 T-GCAGGCT
31216302 ACGAGCTGGT
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
79 2 0.03
80 67 0.97
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (80 bp):
GGAATGTTATCCGGGCTTAAAGACCCACAGGCTTCATGCTGGAATTGTATCCGGGCTTAAAGACC
TGCAGGCTGTATGCT
Found at i:31223903 original size:40 final size:40
Alignment explanation
Indices: 31223859--31224005 Score: 217
Period size: 40 Copynumber: 3.7 Consensus size: 40
31223849 TGAGGAATGT
* *
31223859 TATCCGGGCTTAAAGACCCGCAGGCTATGTGCTAGAATTG
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTG
*
31223899 TATCCGGGCTTAAAGTCCCGCAGGCTATATGCTGGAA-TG
1 TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTG
*
31223938 TTATTCGGGCTTAAAGACCCGCAGGCT-TCATGCTGGAATTG
1 -TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTG
*
31223979 TATCCGGGCTTAAAGACTCGCAGGCTA
1 TATCCGGGCTTAAAGACCCGCAGGCTA
31224006 CGAGCTGGTA
Statistics
Matches: 96, Mismatches: 7, Indels: 7
0.87 0.06 0.06
Matches are distributed among these distances:
39 3 0.03
40 91 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTG
Found at i:31223985 original size:80 final size:80
Alignment explanation
Indices: 31223852--31224005 Score: 247
Period size: 80 Copynumber: 1.9 Consensus size: 80
31223842 TGATACTTGA
* *
31223852 GGAATGTTATCCGGGCTTAAAGACCCGCAGGCTATGTGCTAGAATTGTATCCGGGCTTAAAGTCC
1 GGAATGTTATCCGGGCTTAAAGACCCGCAGGCTATATGCTAGAATTGTATCCGGGCTTAAAGACC
31223917 CGCAGGCTATATGCT
66 CGCAGGCTATATGCT
* *
31223932 GGAATGTTATTCGGGCTTAAAGACCCGCAGGCT-TCATGCTGGAATTGTATCCGGGCTTAAAGAC
1 GGAATGTTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTAGAATTGTATCCGGGCTTAAAGAC
*
31223996 TCGCAGGCTA
65 CCGCAGGCTA
31224006 CGAGCTGGTA
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
79 1 0.01
80 67 0.99
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
GGAATGTTATCCGGGCTTAAAGACCCGCAGGCTATATGCTAGAATTGTATCCGGGCTTAAAGACC
CGCAGGCTATATGCT
Found at i:31224013 original size:40 final size:41
Alignment explanation
Indices: 31223859--31224031 Score: 205
Period size: 40 Copynumber: 4.3 Consensus size: 41
31223849 TGAGGAATGT
* *
31223859 TATCCGGGCTTAAAGACCCGCAGGCTATG-TGCTAGAATTG
1 TATCCGGGCTTAAAGACCCGCAGGCTACGATGCTGGAATTG
* *
31223899 TATCCGGGCTTAAAGTCCCGCAGGCTA-TATGCTGGAA-TG
1 TATCCGGGCTTAAAGACCCGCAGGCTACGATGCTGGAATTG
* *
31223938 TTATTCGGGCTTAAAGACCCGCAGGCTTC-ATGCTGGAATTG
1 -TATCCGGGCTTAAAGACCCGCAGGCTACGATGCTGGAATTG
* * *
31223979 TATCCGGGCTTAAAGACTCGCAGGCTACGA-GCTGGTATTA
1 TATCCGGGCTTAAAGACCCGCAGGCTACGATGCTGGAATTG
*
31224019 TA-CCGGGTTTAAA
1 TATCCGGGCTTAAA
31224032 TTCCCGTAGG
Statistics
Matches: 116, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 12 0.10
40 101 0.87
41 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (41 bp):
TATCCGGGCTTAAAGACCCGCAGGCTACGATGCTGGAATTG
Found at i:31225261 original size:28 final size:29
Alignment explanation
Indices: 31225229--31225343 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
31225219 TACCTGTATC
* *
31225229 TGGCCCATTAAGCCC-AATCACATTCACA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
31225257 TGGCCCATTAGGCCCAAATTACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
*
31225286 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* * *
31225315 TAGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
31225343 T
1 T
31225344 TCATGCTCAC
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
28 27 0.36
29 46 0.62
30 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.26
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:31225280 original size:57 final size:58
Alignment explanation
Indices: 31225219--31225330 Score: 163
Period size: 58 Copynumber: 1.9 Consensus size: 58
31225209 CAAATTCTCC
* *
31225219 TACCTGTATCTGGCCCATTAAGCCC-AATCACATTCACATGGCCCATTAGGCCCAAAT
1 TACCTGTATATGGCCCATTAAGCCCAAATCACATTCACATAGCCCATTAGGCCCAAAT
* * * *
31225276 TACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATAGCCCGTTAGGCCCA
1 TACCTGTATATGGCCCATTAAGCCCAAATCACATTCACATAGCCCATTAGGCCCA
31225331 GTCACATTCA
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 23 0.48
58 25 0.52
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (58 bp):
TACCTGTATATGGCCCATTAAGCCCAAATCACATTCACATAGCCCATTAGGCCCAAAT
Found at i:31229201 original size:40 final size:40
Alignment explanation
Indices: 31229056--31229259 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
31229046 CATTTGAATG
* * * *
31229056 ATATCCGGGCTAAGTCCCGAAAGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * * *
31229096 TTAT-C--GCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
*
31229133 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* *
31229173 ATATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* * * ** *
31229213 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
31229253 ATATCCG
1 ATATCCG
31229260 ACTAAATTCC
Statistics
Matches: 143, Mismatches: 15, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
37 35 0.24
38 1 0.01
39 3 0.02
40 101 0.71
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:31233679 original size:40 final size:40
Alignment explanation
Indices: 31233620--31233764 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
31233610 CATTTGAATG
* *
31233620 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGA-T
* *
31233660 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGAT
* * *
31233700 ATATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGAT
* *
31233740 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
31233765 ATTGTGCTTG
Statistics
Matches: 95, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
40 92 0.97
41 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGAT
Found at i:31237503 original size:22 final size:21
Alignment explanation
Indices: 31237478--31237524 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 21
31237468 ATTATAAATT
*
31237478 ATATAAATTATAATTATTGTTA
1 ATATAAATTATAAATATT-TTA
*
31237500 ATATTAATTATAAATATTTTA
1 ATATAAATTATAAATATTTTA
31237521 ATAT
1 ATAT
31237525 TTCTATTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 7 0.30
22 16 0.70
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (21 bp):
ATATAAATTATAAATATTTTA
Found at i:31239896 original size:19 final size:18
Alignment explanation
Indices: 31239854--31239897 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 18
31239844 ATATTTTAAA
*
31239854 TTTATTTAGGTGGATAAT
1 TTTATTTAGGTAGATAAT
31239872 TCTTATTTAGGTAGATAAGT
1 T-TTATTTAGGTAGATAA-T
31239892 TTTATT
1 TTTATT
31239898 CATATTCTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 1 0.04
19 20 0.87
20 2 0.09
ACGTcount: A:0.27, C:0.02, G:0.18, T:0.52
Consensus pattern (18 bp):
TTTATTTAGGTAGATAAT
Found at i:31239973 original size:42 final size:42
Alignment explanation
Indices: 31239914--31240002 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
31239904 CTAGTAGTAT
* *
31239914 TTTTATTTTATCTTTTAGTAGTTTATTAGAGTAAGGGAACTA
1 TTTTCTTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
*
31239956 TTTTCTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTCTTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
31239998 TTTTC
1 TTTTC
31240003 CCAATTAGGA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.27, C:0.06, G:0.16, T:0.52
Consensus pattern (42 bp):
TTTTCTTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
Found at i:31248253 original size:61 final size:61
Alignment explanation
Indices: 31248188--31248310 Score: 237
Period size: 61 Copynumber: 2.0 Consensus size: 61
31248178 CATTCATCTA
*
31248188 AGTTGTTTTTAAACTTTGTTTGCTAAGTTAGAAACCAACAAGAAGGTCTCTTTGCTTGTAG
1 AGTTGTTTTTAAACTTTGTTTGCTAAGTTAGAAACCAACAAGAAGGTCTCTTTACTTGTAG
31248249 AGTTGTTTTTAAACTTTGTTTGCTAAGTTAGAAACCAACAAGAAGGTCTCTTTACTTGTAG
1 AGTTGTTTTTAAACTTTGTTTGCTAAGTTAGAAACCAACAAGAAGGTCTCTTTACTTGTAG
31248310 A
1 A
31248311 AGACAGGAAG
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.39
Consensus pattern (61 bp):
AGTTGTTTTTAAACTTTGTTTGCTAAGTTAGAAACCAACAAGAAGGTCTCTTTACTTGTAG
Found at i:31256994 original size:43 final size:43
Alignment explanation
Indices: 31256946--31257057 Score: 179
Period size: 43 Copynumber: 2.6 Consensus size: 43
31256936 CCGGTATTAC
31256946 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
31256989 GCCTGCTAAGCACGAAGGCCCAAATACACATCACCGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
31257032 GCTTGCTAGGCACGAAGGCTCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
31257058 TAATACCAGC
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 62 1.00
ACGTcount: A:0.31, C:0.31, G:0.25, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:31257106 original size:38 final size:38
Alignment explanation
Indices: 31257055--31257251 Score: 295
Period size: 38 Copynumber: 5.1 Consensus size: 38
31257045 GAAGGCTCGA
** * *
31257055 ATATAATACCAGCATTAGGCCTGCGGGATTTATCCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
31257093 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
** *
31257131 ATATTTTACCAGCACGAAGCCTGCGGGTCTTTAAGCCCGG
1 ATATAATACCAGCACGAAGCCTGCGGG-ATTTAA-CCCGG
*
31257171 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCAG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
31257209 ATATAATACCAGCACGAAGCCTACGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
31257247 ATATA
1 ATATA
31257252 CATCGAATAT
Statistics
Matches: 144, Mismatches: 13, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
38 104 0.72
39 10 0.07
40 30 0.21
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.22
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:31257182 original size:78 final size:76
Alignment explanation
Indices: 31257055--31257251 Score: 286
Period size: 78 Copynumber: 2.6 Consensus size: 76
31257045 GAAGGCTCGA
** * * *
31257055 ATATAATACCAGCATTAGGCCTGCGGGATTTATCCCGGATATAATACCAGCACGAAGCCTGCGGG
1 ATATAATACCAGCACGAAGCCTACGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGG
*
31257120 ATTTAACCCGG
66 ATTTAACCCAG
** * *
31257131 ATATTTTACCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATATAATACCAGCACGAAGCCTGCG
1 ATATAATACCAGCACGAAGCCTACGGG-ATTTAA-CCCGGATATAATACCAGCACGAAGCCTGCG
31257196 GGATTTAACCCAG
64 GGATTTAACCCAG
31257209 ATATAATACCAGCACGAAGCCTACGGGATTTAACCCGGATATA
1 ATATAATACCAGCACGAAGCCTACGGGATTTAACCCGGATATA
31257252 CATCGAATAT
Statistics
Matches: 107, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
76 32 0.30
77 9 0.08
78 66 0.62
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.22
Consensus pattern (76 bp):
ATATAATACCAGCACGAAGCCTACGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGG
ATTTAACCCAG
Found at i:31271283 original size:15 final size:15
Alignment explanation
Indices: 31271263--31271295 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
31271253 GTCTTATAAC
*
31271263 AAGTTAGATAACAAT
1 AAGTTAAATAACAAT
31271278 AAGTTAAATAACAAT
1 AAGTTAAATAACAAT
31271293 AAG
1 AAG
31271296 CACATACTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.58, C:0.06, G:0.12, T:0.24
Consensus pattern (15 bp):
AAGTTAAATAACAAT
Found at i:31271518 original size:40 final size:40
Alignment explanation
Indices: 31271474--31271550 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
31271464 CAGTAATATG
* * *
31271474 GACAAGCCACTAGTAATGAAAATAAACTACCAATAATGCA
1 GACAAGCCACCAGTAATGAAAACAAACCACCAATAATGCA
* * *
31271514 GACAAGCTACCAGTAATGCAAACAAGCCACCAATAAT
1 GACAAGCCACCAGTAATGAAAACAAACCACCAATAAT
31271551 ATAGATAAAC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.48, C:0.23, G:0.13, T:0.16
Consensus pattern (40 bp):
GACAAGCCACCAGTAATGAAAACAAACCACCAATAATGCA
Found at i:31271523 original size:20 final size:20
Alignment explanation
Indices: 31271500--31271550 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
31271490 TGAAAATAAA
*
31271500 CTACCAATAATGCAGACAAG
1 CTACCAATAATGCAAACAAG
*
31271520 CTACCAGTAATGCAAACAAG
1 CTACCAATAATGCAAACAAG
*
31271540 CCACCAATAAT
1 CTACCAATAAT
31271551 ATAGATAAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.45, C:0.27, G:0.12, T:0.16
Consensus pattern (20 bp):
CTACCAATAATGCAAACAAG
Found at i:31276104 original size:14 final size:14
Alignment explanation
Indices: 31276085--31276113 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
31276075 GATGAGTAAG
31276085 TTTAAATAATTTGA
1 TTTAAATAATTTGA
31276099 TTTAAATAATTTGA
1 TTTAAATAATTTGA
31276113 T
1 T
31276114 GTAATGATGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (14 bp):
TTTAAATAATTTGA
Found at i:31287414 original size:29 final size:30
Alignment explanation
Indices: 31287360--31287463 Score: 90
Period size: 29 Copynumber: 3.6 Consensus size: 30
31287350 ATATGGCCCG
** * *
31287360 CTAGGCCC-AATTTTATTCAAATGGCCCAT
1 CTAGGCCCAAATCATATTCATAGGGCCCAT
* *
31287389 CT-GGCCCAGATCATATTCTTAGGGCCCA-
1 CTAGGCCCAAATCATATTCATAGGGCCCAT
** * *
31287417 CTAGGCCCACTTCACATTCATATGGCCCAT
1 CTAGGCCCAAATCATATTCATAGGGCCCAT
31287447 -TAGGCCCAAATCATATT
1 CTAGGCCCAAATCATATT
31287464 ATATTCATGT
Statistics
Matches: 58, Mismatches: 14, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
28 7 0.12
29 51 0.88
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (30 bp):
CTAGGCCCAAATCATATTCATAGGGCCCAT
Found at i:31287569 original size:19 final size:18
Alignment explanation
Indices: 31287536--31287572 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
31287526 TGGGCCCAAC
31287536 AGCCCATCAGGCCCATTT
1 AGCCCATCAGGCCCATTT
*
31287554 AGCCCATTCCGGCCCATTT
1 AGCCCA-TCAGGCCCATTT
31287573 GGCCAATCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.19, C:0.41, G:0.16, T:0.24
Consensus pattern (18 bp):
AGCCCATCAGGCCCATTT
Found at i:31288957 original size:16 final size:16
Alignment explanation
Indices: 31288936--31288968 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
31288926 AAATATTTAA
31288936 GATTTCAGGATTTTTG
1 GATTTCAGGATTTTTG
*
31288952 GATTTCGGGATTTTTG
1 GATTTCAGGATTTTTG
31288968 G
1 G
31288969 GGCGTTACAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.06, G:0.30, T:0.48
Consensus pattern (16 bp):
GATTTCAGGATTTTTG
Found at i:31289051 original size:43 final size:41
Alignment explanation
Indices: 31288989--31289142 Score: 191
Period size: 42 Copynumber: 3.7 Consensus size: 41
31288979 TAGCATACCA
* *
31288989 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCTTATTG
1 ATGCCATATCCCAGATATGGTCTTACAAG-AATCTCATATTG
* * * *
31289031 ATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACAAG-AATCTCATATTG
* **
31289074 ATGCCATATCCCAAATATTATCTTACAAGAAGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACAAGAA-TCTCATATTG
31289116 ATGCCATATCCCAGATATGGTCTTACA
1 ATGCCATATCCCAGATATGGTCTTACA
31289143 CATAGACTTA
Statistics
Matches: 94, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
41 2 0.02
42 56 0.60
43 36 0.38
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.32
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACAAGAATCTCATATTG
Found at i:31292350 original size:42 final size:42
Alignment explanation
Indices: 31292238--31292351 Score: 129
Period size: 43 Copynumber: 2.7 Consensus size: 42
31292228 TACCATACCA
* * * *
31292238 ATGCCATATCCCAGATATAGTCTTACATATAATCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACAAAATCTCATATCG
* * * * * *
31292280 ATGACAATAGCTCGGCTATGGTATTACACAAAATCTCATATCG
1 ATG-CCATATCCCAGATATGGTCTTACACAAAATCTCATATCG
31292323 ATGCCATATCCCAGATATGGTCTTACACA
1 ATGCCATATCCCAGATATGGTCTTACACA
31292352 TAGACTTGGT
Statistics
Matches: 55, Mismatches: 16, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
42 23 0.42
43 32 0.58
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACAAAATCTCATATCG
Found at i:31300551 original size:95 final size:96
Alignment explanation
Indices: 31300417--31300610 Score: 372
Period size: 95 Copynumber: 2.0 Consensus size: 96
31300407 AATAATTTAT
31300417 TTTATTGATTCAATTAAACAAAAAAAATATTTGTTTATGATGTGTTTTTATTCCTAATGTATGTA
1 TTTATTGATTCAATTAAACAAAAAAAATATTTGTTTATGATGTGTTTTTATTCCTAATGTATGTA
31300482 AATATTTTTATTTATTTAAAATTATTATAAA
66 AATATTTTTATTTATTTAAAATTATTATAAA
*
31300513 TTTATTGATTCAATTAAAC-AAAAAAATATTTGTTTATGATGTGTTTTTATTCCTTATGTATGTA
1 TTTATTGATTCAATTAAACAAAAAAAATATTTGTTTATGATGTGTTTTTATTCCTAATGTATGTA
31300577 AATATTTTTATTTATTTAAAATTATTATAAA
66 AATATTTTTATTTATTTAAAATTATTATAAA
31300608 TTT
1 TTT
31300611 TACAACTTTT
Statistics
Matches: 97, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
95 78 0.80
96 19 0.20
ACGTcount: A:0.37, C:0.04, G:0.07, T:0.52
Consensus pattern (96 bp):
TTTATTGATTCAATTAAACAAAAAAAATATTTGTTTATGATGTGTTTTTATTCCTAATGTATGTA
AATATTTTTATTTATTTAAAATTATTATAAA
Found at i:31304100 original size:36 final size:37
Alignment explanation
Indices: 31304053--31304123 Score: 117
Period size: 36 Copynumber: 1.9 Consensus size: 37
31304043 TAGCTCAACG
*
31304053 AAATCTCCACACGAAGTTATC-GGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
*
31304089 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGA
31304124 ATATATTTCC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
36 19 0.59
37 13 0.41
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
Found at i:31304327 original size:50 final size:50
Alignment explanation
Indices: 31304273--31304407 Score: 245
Period size: 50 Copynumber: 2.7 Consensus size: 50
31304263 CATCGCCTAC
*
31304273 ATATTTCACACT-AGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTGA-CCATTCGGCTTTACCACATATACATATCTCATATAT
31304323 ATATTTCACATTGACCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTGACCATTCGGCTTTACCACATATACATATCTCATATAT
31304373 ATATTTCACATTGACCATTCGGCTTTACCACATAT
1 ATATTTCACATTGACCATTCGGCTTTACCACATAT
31304408 GCATGTTCTA
Statistics
Matches: 83, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
50 82 0.99
51 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (50 bp):
ATATTTCACATTGACCATTCGGCTTTACCACATATACATATCTCATATAT
Found at i:31304480 original size:47 final size:48
Alignment explanation
Indices: 31304378--31304612 Score: 321
Period size: 47 Copynumber: 5.1 Consensus size: 48
31304368 TATATATATT
* * *
31304378 TCACATTGACCATTCGGCTTTA-C-CACATATGCATG-TTC-TA-TCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTTCACATTCA
*
31304421 CCACATTGGCCATTCGG-CTTATCACACATATGCATGCTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTTCACATTCA
*
31304468 TCACATTGGCCATTCGGCCTTAT--CACATATGCATGC-TCACATTTA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTTCACATTCA
* *
31304513 TCACATTGGCCATTCGGCCTTATCACATATATGCATGC-TCACATTTA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTTCACATTCA
*
31304560 TCACATTGGCCATTCGGCCTTATCACATATATGCATG-TTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTTCACATTCA
31304607 TCACAT
1 TCACAT
31304613 AAAATCCTAA
Statistics
Matches: 175, Mismatches: 8, Indels: 14
0.89 0.04 0.07
Matches are distributed among these distances:
42 3 0.02
43 16 0.09
44 12 0.07
45 34 0.19
46 14 0.08
47 91 0.52
48 5 0.03
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (48 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTTCACATTCA
Found at i:31304516 original size:23 final size:23
Alignment explanation
Indices: 31304487--31304565 Score: 67
Period size: 23 Copynumber: 3.4 Consensus size: 23
31304477 CCATTCGGCC
31304487 TTATCACATATGCATGCTCACAT
1 TTATCACATATGCATGCTCACAT
* *
31304510 TTATCACAT-TGGCCAT--TCGGC-C
1 TTATCACATAT-G-CATGCTC-ACAT
31304532 TTATCACATATATGCATGCTCACAT
1 TTATCAC--ATATGCATGCTCACAT
31304557 TTATCACAT
1 TTATCACAT
31304566 TGGCCATTCG
Statistics
Matches: 43, Mismatches: 4, Indels: 18
0.66 0.06 0.28
Matches are distributed among these distances:
22 10 0.23
23 16 0.37
24 7 0.16
25 10 0.23
ACGTcount: A:0.28, C:0.27, G:0.10, T:0.35
Consensus pattern (23 bp):
TTATCACATATGCATGCTCACAT
Found at i:31304563 original size:92 final size:92
Alignment explanation
Indices: 31304378--31304612 Score: 341
Period size: 92 Copynumber: 2.6 Consensus size: 92
31304368 TATATATATT
* * * * *
31304378 TCACATTGACCATTCGGCTTTACCACATATGCATGTTC-TA-TCACCACATTGGCCATTCGGCTT
1 TCACATTGGCCATTCGGCCTTATCACATATGCATGTTCACATTCATCACATTGGCCATTCGGCTT
31304441 ATCACACATATGCATGCTTCACATTCA
66 ATCACACATATGCATGCTTCACATTCA
* *
31304468 TCACATTGGCCATTCGGCCTTATCACATATGCATGCTCACATTTATCACATTGGCCATTCGGCCT
1 TCACATTGGCCATTCGGCCTTATCACATATGCATGTTCACATTCATCACATTGGCCATTCGG-CT
* *
31304533 TATCACATATATGCATGC-TCACATTTA
65 TATCACACATATGCATGCTTCACATTCA
31304560 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
1 TCACATTGGCCATTCGGCCTTATCAC--ATATGCATGTTCACATTCATCACAT
31304613 AAAATCCTAA
Statistics
Matches: 129, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
90 34 0.26
91 1 0.01
92 52 0.40
93 19 0.15
94 23 0.18
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (92 bp):
TCACATTGGCCATTCGGCCTTATCACATATGCATGTTCACATTCATCACATTGGCCATTCGGCTT
ATCACACATATGCATGCTTCACATTCA
Found at i:31308365 original size:67 final size:68
Alignment explanation
Indices: 31308224--31308368 Score: 213
Period size: 67 Copynumber: 2.1 Consensus size: 68
31308214 CGGGGATCAT
* *
31308224 CACTTAGCAACCCTCGGGGGAATCAGCACATAGCAACCCCTTTTCATTTCAAATATACAATGGAT
1 CACTTAGCAACCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCATTTCAAAGATACAATGGAT
31308289 ATCG
65 ATCG
***
31308293 CACTTAGCAACCCCTC-GGGAATCAGCACATAGCAACCCCCTTT-ATTTCAAAGATATGGTGGAT
1 CACTTAGCAA-CCCTCGGGGAATCAGCACATAGCAACCCCCTTTCATTTCAAAGATACAATGGAT
31308356 ATCG
65 ATCG
31308360 CACTTAGCA
1 CACTTAGCA
31308369 CCACCAATGA
Statistics
Matches: 70, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
67 29 0.41
68 26 0.37
69 10 0.14
70 5 0.07
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (68 bp):
CACTTAGCAACCCTCGGGGAATCAGCACATAGCAACCCCCTTTCATTTCAAAGATACAATGGATA
TCG
Found at i:31308512 original size:26 final size:26
Alignment explanation
Indices: 31308482--31308532 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
31308472 ACCAATGAAC
*
31308482 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
31308508 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
31308533 CTTTCACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:31308552 original size:103 final size:102
Alignment explanation
Indices: 31308292--31308609 Score: 508
Period size: 103 Copynumber: 3.2 Consensus size: 102
31308282 AATGGATATC
31308292 GCACTTAGCAACCCCTC-GGGAATCAGCACATAGCAACCCCCTTT---ATTTCAAAGATATGGTG
1 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
31308353 GATATCGCACTTAGCACCACCAATGAA--GGGAATCA
66 GATATCGCACTTAGCACCACCAATGAACGGGGAATCA
31308388 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
31308453 GGATATCGCACTTAGCACCACCAATGAACCGGGGAATCA
65 GGATATCGCACTTAGCACCACCAATGAA-CGGGGAATCA
31308492 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
* *
31308557 GATCA-CGCACATAGCACCACC-ATAAATCGGGGAATCA
66 GAT-ATCGCACTTAGCACCACCAATGAA-CGGGGAATCA
**
31308594 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
31308610 TTTATATACA
Statistics
Matches: 208, Mismatches: 5, Indels: 12
0.92 0.02 0.05
Matches are distributed among these distances:
96 17 0.08
98 27 0.13
101 44 0.21
102 28 0.13
103 66 0.32
104 26 0.12
ACGTcount: A:0.32, C:0.31, G:0.19, T:0.19
Consensus pattern (102 bp):
GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
GATATCGCACTTAGCACCACCAATGAACGGGGAATCA
Found at i:31308771 original size:19 final size:20
Alignment explanation
Indices: 31308734--31308772 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
31308724 ATTTTAATTC
* *
31308734 CAAATAAATCTCAACATAAT
1 CAAATAAATATCAAAATAAT
31308754 CAAAT-AATATCAAAATAAT
1 CAAATAAATATCAAAATAAT
31308773 ACATTAAGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.59, C:0.15, G:0.00, T:0.26
Consensus pattern (20 bp):
CAAATAAATATCAAAATAAT
Found at i:31308970 original size:29 final size:29
Alignment explanation
Indices: 31308937--31309000 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
31308927 TAATCCACCA
31308937 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
31308966 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
31308996 CCCAA
1 CCCAA
31309001 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:31308974 original size:30 final size:30
Alignment explanation
Indices: 31308944--31309000 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
31308934 CCACCCAACT
31308944 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
31308973 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
31309001 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:31310247 original size:50 final size:49
Alignment explanation
Indices: 31310120--31310315 Score: 207
Period size: 50 Copynumber: 3.9 Consensus size: 49
31310110 TCTATTGTGC
* * *
31310120 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCA-ATAACTTT
1 GGTCAAGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATAA--TT
* * * * **
31310171 GATCACGTGTGTGGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCAAGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
31310220 AGGTCAAGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCAAGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
31310270 GGTCGCA-TGTGTAGTACTAAGTGCAGACTACTATGCGTACCAGATA
1 GGTC-AAGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
31310316 GCTTTGGCTA
Statistics
Matches: 123, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
49 41 0.33
50 45 0.37
51 37 0.30
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCAAGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:31311711 original size:12 final size:12
Alignment explanation
Indices: 31311694--31311719 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
31311684 CCTCACACGC
31311694 CCGTGTGCTAGG
1 CCGTGTGCTAGG
31311706 CCGTGTGCTAGG
1 CCGTGTGCTAGG
31311718 CC
1 CC
31311720 ATGCCAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.31, G:0.38, T:0.23
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:31314794 original size:16 final size:17
Alignment explanation
Indices: 31314775--31314812 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
31314765 TGCAAAAATT
31314775 AATT-GATAATTTAAAA
1 AATTCGATAATTTAAAA
**
31314791 AATTCTTTAATTTAAAA
1 AATTCGATAATTTAAAA
31314808 AATTC
1 AATTC
31314813 TCATTTGTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (17 bp):
AATTCGATAATTTAAAA
Found at i:31314803 original size:17 final size:17
Alignment explanation
Indices: 31314781--31314813 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
31314771 AATTAATTGA
31314781 TAATTTAAAAAATTCTT
1 TAATTTAAAAAATTCTT
31314798 TAATTTAAAAAATTCT
1 TAATTTAAAAAATTCT
31314814 CATTTGTTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (17 bp):
TAATTTAAAAAATTCTT
Found at i:31318187 original size:33 final size:34
Alignment explanation
Indices: 31318116--31318180 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
31318106 TGCATTTTAT
* *
31318116 ACTGATATTGTTACTATATTGGGCTAAGGCCCAC
1 ACTGATACTGTTACTATATTGGGCTAAAGCCCAC
31318150 ACTGATACTGTTACTATA-TGGGCTAAAGCCC
1 ACTGATACTGTTACTATATTGGGCTAAAGCCC
31318181 TAACTGAGAC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 12 0.41
34 17 0.59
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (34 bp):
ACTGATACTGTTACTATATTGGGCTAAAGCCCAC
Done.