Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 99 of 362
Found at i:32048353 original size:27 final size:25
Alignment explanation
Indices: 32048323--32048398 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 25
32048313 TATTTCAGTG
32048323 ATTTTACAAATCGAGGATATTTGGGTA
1 ATTTTACAAATCGAGG-TATTT-GGTA
* *
32048350 ATTTTATAAATCGGGGGTACTTTGGTA
1 ATTTTACAAATC-GAGGTA-TTTGGTA
*
32048377 ATTTTACAAGTCGAAGGTATTT
1 ATTTTACAAATCG-AGGTATTT
32048399 CAGTAACTTG
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
26 4 0.10
27 31 0.76
28 6 0.15
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.39
Consensus pattern (25 bp):
ATTTTACAAATCGAGGTATTTGGTA
Found at i:32048404 original size:27 final size:26
Alignment explanation
Indices: 32048313--32048404 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 26
32048303 AATTCTATCT
*
32048313 TATTTCAGTGATTTTACAAATCGAGG
1 TATTTCAGTAATTTTACAAATCGAGG
** * *
32048339 ATATTTGGGTAATTTTATAAATCGGGGG
1 -TATTTCAGTAATTTTACAAATC-GAGG
* *
32048367 TACTTT-GGTAATTTTACAAGTCGAAGG
1 TA-TTTCAGTAATTTTACAAATCG-AGG
32048394 TATTTCAGTAA
1 TATTTCAGTAA
32048405 CTTGGTAAAC
Statistics
Matches: 52, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
26 4 0.08
27 42 0.81
28 6 0.12
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (26 bp):
TATTTCAGTAATTTTACAAATCGAGG
Found at i:32053296 original size:47 final size:47
Alignment explanation
Indices: 32053242--32053435 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
32053232 TTAGGATTTT
** * *
32053242 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
32053289 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
32053336 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
32053383 ACGTGGTGAATGTGAGCATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
32053430 ATGTGA
1 ATGTGA
32053436 AATATGTATG
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:32053342 original size:22 final size:22
Alignment explanation
Indices: 32053271--32053342 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
32053261 GTATATATGA
32053271 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
32053293 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
32053318 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
32053340 GAT
1 GAT
32053343 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:32053462 original size:48 final size:48
Alignment explanation
Indices: 32053405--32053545 Score: 264
Period size: 48 Copynumber: 2.9 Consensus size: 48
32053395 TGAGCATGCA
32053405 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
32053453 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
32053501 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
32053546 GTGCGTATAT
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 91 1.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:32053794 original size:37 final size:37
Alignment explanation
Indices: 32053686--32053794 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
32053676 GGAAATATAT
*
32053686 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
32053723 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
32053760 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
32053795 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:32057973 original size:23 final size:23
Alignment explanation
Indices: 32057940--32057986 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
32057930 CTGTTATACG
32057940 AACTTACTAAGCATGTAGTGCTT
1 AACTTACTAAGCATGTAGTGCTT
*
32057963 AACTTATTAAGCATGTAGTGCTT
1 AACTTACTAAGCATGTAGTGCTT
32057986 A
1 A
32057987 CTCTGTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (23 bp):
AACTTACTAAGCATGTAGTGCTT
Found at i:32067348 original size:20 final size:19
Alignment explanation
Indices: 32067310--32067348 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
32067300 AACGAAACTG
*
32067310 AAATAGAAATATGTCATTA
1 AAATAGAAATATATCATTA
*
32067329 AAATAGATAATGTATCATTA
1 AAATAGA-AATATATCATTA
32067349 TAACATATGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.51, C:0.05, G:0.10, T:0.33
Consensus pattern (19 bp):
AAATAGAAATATATCATTA
Found at i:32068686 original size:68 final size:69
Alignment explanation
Indices: 32068535--32068693 Score: 171
Period size: 68 Copynumber: 2.3 Consensus size: 69
32068525 CCTAGCCAAT
* * *
32068535 TTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTAC
1 TTATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTAC
**
32068600 ATTTA
65 ACATA
* * * *
32068605 TCTCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTA
1 T-TATCTCGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTA
32068667 CTACATA
64 C-ACATA
*
32068674 TTATCTCGTAGCTTTCTTGT
1 TTATCTCGTAGCTCTCTTGT
32068694 ACACATGATG
Statistics
Matches: 74, Mismatches: 12, Indels: 8
0.79 0.13 0.09
Matches are distributed among these distances:
68 38 0.51
69 4 0.05
70 3 0.04
71 29 0.39
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.36
Consensus pattern (69 bp):
TTATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACA
CATA
Found at i:32070458 original size:40 final size:40
Alignment explanation
Indices: 32070377--32070558 Score: 278
Period size: 40 Copynumber: 4.6 Consensus size: 40
32070367 CAACCAAGTA
** * *
32070377 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
32070416 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
32070456 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
32070496 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
32070536 CATTCGGGACTTAGCTCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
32070559 CATCCGAATA
Statistics
Matches: 133, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 13 0.10
40 120 0.90
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:32078457 original size:40 final size:40
Alignment explanation
Indices: 32078376--32078557 Score: 287
Period size: 40 Copynumber: 4.6 Consensus size: 40
32078366 CAACCAAGTA
** * *
32078376 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
32078415 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
32078455 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
32078495 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
32078535 CCTTCGGGACTTAGCTCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
32078558 CATCCGAATA
Statistics
Matches: 134, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 13 0.10
40 121 0.90
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:32089128 original size:44 final size:43
Alignment explanation
Indices: 32089061--32089212 Score: 126
Period size: 43 Copynumber: 3.5 Consensus size: 43
32089051 TGTTATCGTG
* * * * * *
32089061 TAAGACCACGTCTGGGCCGTTGGCATCGATTTGTGATTTACGTA
1 TAAGACCATGTCTGGGACATTGGCATCGATATATGATTT-CATA
* *
32089105 TAAGACCATGTTTGGGACATTGGCATCG-TATATGATTTCATG
1 TAAGACCATGTCTGGGACATTGGCATCGATATATGATTTCATA
* * * * * * *
32089147 TAAGACCCTGTCTAGGACAGTGGCATCGACATTTGATTACATG
1 TAAGACCATGTCTGGGACATTGGCATCGATATATGATTTCATA
* * *
32089190 TAAGACCACGTCTAGGACGTTGG
1 TAAGACCATGTCTGGGACATTGG
32089213 AATTGTTGAG
Statistics
Matches: 88, Mismatches: 19, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
42 26 0.30
43 38 0.43
44 24 0.27
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACATTGGCATCGATATATGATTTCATA
Found at i:32092881 original size:21 final size:20
Alignment explanation
Indices: 32092853--32092891 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
32092843 CAAAACTTGT
32092853 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
32092873 ATAATCTATCATTAAACAT
1 ATAA-CTATCATCAAACAT
32092892 CAAAATACTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:32096876 original size:17 final size:15
Alignment explanation
Indices: 32096846--32096890 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
32096836 AGTCCGAGAC
32096846 AAAGAAATCCAAGAT
1 AAAGAAATCCAAGAT
32096861 AAAGAAACTCCCAAGAT
1 AAAGAAA-T-CCAAGAT
**
32096878 TTAGAAATCCAAG
1 AAAGAAATCCAAG
32096891 TTACAATACC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 12 0.46
16 2 0.08
17 12 0.46
ACGTcount: A:0.53, C:0.18, G:0.13, T:0.16
Consensus pattern (15 bp):
AAAGAAATCCAAGAT
Found at i:32099234 original size:40 final size:40
Alignment explanation
Indices: 32099175--32099391 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
32099165 GAATTGATAA
32099175 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
32099214 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
* * *
32099255 -CGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
32099294 CCGGGCTAAGTCTCGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
32099334 CCGAGCTAAGTCCCGAAGGCATTTGAGCGAG-AAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
**
32099374 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
32099392 TACTTGGTTT
Statistics
Matches: 160, Mismatches: 14, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
39 25 0.16
40 133 0.83
41 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:32107279 original size:40 final size:40
Alignment explanation
Indices: 32107118--32107271 Score: 256
Period size: 40 Copynumber: 3.9 Consensus size: 40
32107108 ATTCGGATTG
32107118 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
32107157 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
32107197 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
32107237 ATAACCGAGCTAAGTCCCGAAGGCATTTGAGCGAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
32107272 AAGCTATATC
Statistics
Matches: 106, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 13 0.12
40 93 0.88
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:32112518 original size:39 final size:40
Alignment explanation
Indices: 32112404--32112588 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
32112394 GCTACTCGTT
*
32112404 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
32112444 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
32112484 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
32112523 CAAATGCCTTC-GGATCTTAGTCCAGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
32112564 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32112589 CATCATTCGA
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 77 0.63
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:32112572 original size:79 final size:81
Alignment explanation
Indices: 32112404--32112588 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
32112394 GCTACTCGTT
* * * *
32112404 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCA
* *
32112468 GATTTAGTAACTCGCAC
65 GATATAGTAACTAGCAC
* **
32112485 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCACACAAATGCCTTC-GGATCTTAGTCCA
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCGGGA-CTTAACCCA
* *
32112547 GATATGGTCACTTAGCA-
65 GATATAGTAAC-TAGCAC
32112564 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
32112589 CATCATTCGA
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 57 0.65
80 25 0.28
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCAG
ATATAGTAACTAGCAC
Found at i:32115345 original size:40 final size:40
Alignment explanation
Indices: 32115297--32115563 Score: 480
Period size: 40 Copynumber: 6.7 Consensus size: 40
32115287 GCAAACACAT
* *
32115297 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
32115337 TTGCCTTCGGGTCTTAGCCCGGATATATCATCCCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
32115377 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
32115417 TTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
32115457 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
32115497 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
32115537 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
32115564 ATCCAATGTT
Statistics
Matches: 217, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:32124159 original size:40 final size:40
Alignment explanation
Indices: 32124111--32124377 Score: 480
Period size: 40 Copynumber: 6.7 Consensus size: 40
32124101 GCAAACACAT
* *
32124111 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
32124151 TTGCCTTCGGGTCTTAGCCCGGATATATCATCCCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
32124191 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
32124231 TTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
32124271 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
32124311 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
32124351 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
32124378 ATCCAATGTT
Statistics
Matches: 217, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:32133759 original size:24 final size:23
Alignment explanation
Indices: 32133707--32133764 Score: 55
Period size: 24 Copynumber: 2.4 Consensus size: 23
32133697 GTTATTACTA
* *
32133707 ATATTTTAATTATTATGAAAATT
1 ATATTATAATTATTATGAAAAAT
32133730 ATTATTATAATTATTA-GATACAAAT
1 A-TATTATAATTATTATGA-A-AAAT
32133755 ATATTTATAA
1 ATA-TTATAA
32133765 AATTATTGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
23 3 0.10
24 16 0.55
25 10 0.34
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.48
Consensus pattern (23 bp):
ATATTATAATTATTATGAAAAAT
Found at i:32133861 original size:23 final size:24
Alignment explanation
Indices: 32133799--32133875 Score: 59
Period size: 23 Copynumber: 3.1 Consensus size: 24
32133789 TAAATTAACA
* * * *
32133799 TATTATTAGAAAATTTTACTGTAT
1 TATTATTAGGAAATTATAATATAT
32133823 CTATTGATTTATGGAAATTATAAT-TAT
1 -TATT-A-TTA-GGAAATTATAATATAT
*
32133850 TATTATTAGGAAAATAT-ATATAT
1 TATTATTAGGAAATTATAATATAT
32133873 TAT
1 TAT
32133876 CGTATTTGAA
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
22 2 0.05
23 14 0.32
24 3 0.07
25 5 0.11
26 5 0.11
27 6 0.14
28 9 0.20
ACGTcount: A:0.40, C:0.03, G:0.09, T:0.48
Consensus pattern (24 bp):
TATTATTAGGAAATTATAATATAT
Found at i:32135888 original size:27 final size:26
Alignment explanation
Indices: 32135857--32135917 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
32135847 TTTATTAAAC
* *
32135857 TACCCCTAAGTATGAAAATTACCGTTT
1 TACCCCTAAGTAT-AAAATGACCGTTA
* * *
32135884 TACCCCTAGGTGTTAAATGACCGTTA
1 TACCCCTAAGTATAAAATGACCGTTA
32135910 TACCCCTA
1 TACCCCTA
32135918 GGGTTAATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 18 0.62
27 11 0.38
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (26 bp):
TACCCCTAAGTATAAAATGACCGTTA
Found at i:32135906 original size:26 final size:25
Alignment explanation
Indices: 32135872--32135924 Score: 79
Period size: 26 Copynumber: 2.1 Consensus size: 25
32135862 CTAAGTATGA
* *
32135872 AAATTACCGTTTTACCCCTAGGTGTT
1 AAATGACCGTTATACCCCTAGG-GTT
32135898 AAATGACCGTTATACCCCTAGGGTT
1 AAATGACCGTTATACCCCTAGGGTT
32135923 AA
1 AA
32135925 TTTTGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (25 bp):
AAATGACCGTTATACCCCTAGGGTT
Found at i:32140742 original size:40 final size:40
Alignment explanation
Indices: 32140634--32140735 Score: 168
Period size: 40 Copynumber: 2.5 Consensus size: 40
32140624 GATGATAACC
* ***
32140634 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAAACT
32140674 GGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAAACT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAAACT
32140714 GGGCTAAGTCCCGAAGGCATTT
1 GGGCTAAGTCCCGAAGGCATTT
32140736 AAGCGAGTAG
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAAACT
Found at i:32144253 original size:32 final size:32
Alignment explanation
Indices: 32144217--32144283 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
32144207 AGCTTCTCCC
32144217 ATGGCTATCTTAATCTTAAATTTCAATTAAAG
1 ATGGCTATCTTAATCTTAAATTTCAATTAAAG
*
32144249 ATGGCTATCTTAATCTTAAATTTCAATTGAAG
1 ATGGCTATCTTAATCTTAAATTTCAATTAAAG
32144281 ATG
1 ATG
32144284 AACAAAGAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (32 bp):
ATGGCTATCTTAATCTTAAATTTCAATTAAAG
Found at i:32150547 original size:29 final size:28
Alignment explanation
Indices: 32150501--32150560 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 28
32150491 TTTTCATTTA
*
32150501 TTTCACAATTCAACCCCTCAATTTACACT
1 TTTCACAATTCAACCCCT-AATATACACT
* * *
32150530 TTTCACAATTTAATCCCTAATATACATT
1 TTTCACAATTCAACCCCTAATATACACT
32150558 TTT
1 TTT
32150561 ACTCAAAATC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 11 0.41
29 16 0.59
ACGTcount: A:0.32, C:0.27, G:0.00, T:0.42
Consensus pattern (28 bp):
TTTCACAATTCAACCCCTAATATACACT
Found at i:32152631 original size:29 final size:28
Alignment explanation
Indices: 32152585--32152644 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 28
32152575 TTTTCATTTA
*
32152585 TTTCACAATTCAACCCCTCAATTTACACT
1 TTTCACAATTCAACCCCT-AATATACACT
* * *
32152614 TTTCACAATTTAATCCCTAATATACATT
1 TTTCACAATTCAACCCCTAATATACACT
32152642 TTT
1 TTT
32152645 ACTCAAAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 11 0.41
29 16 0.59
ACGTcount: A:0.32, C:0.27, G:0.00, T:0.42
Consensus pattern (28 bp):
TTTCACAATTCAACCCCTAATATACACT
Found at i:32153381 original size:20 final size:19
Alignment explanation
Indices: 32153343--32153382 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
32153333 AAAGTAGGGG
*
32153343 AATTTATTTTCTAATAATA
1 AATTTATTTTCTAAGAATA
*
32153362 AATTCTATTTTCTGAGAATA
1 AATT-TATTTTCTAAGAATA
32153382 A
1 A
32153383 TAATTTTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.40, C:0.07, G:0.05, T:0.47
Consensus pattern (19 bp):
AATTTATTTTCTAAGAATA
Found at i:32168117 original size:104 final size:105
Alignment explanation
Indices: 32167937--32168204 Score: 450
Period size: 104 Copynumber: 2.6 Consensus size: 105
32167927 TAACTGTTAT
* **
32167937 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
32168002 AATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
*
32168041 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
32168106 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
* **
32168146 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
32168205 TTATATACAA
Statistics
Matches: 154, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
104 82 0.53
105 71 0.46
106 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.19
Consensus pattern (105 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
Found at i:32168565 original size:29 final size:29
Alignment explanation
Indices: 32168532--32168595 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
32168522 TAATCCACCA
32168532 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
32168561 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
32168591 CCCAA
1 CCCAA
32168596 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:32168569 original size:30 final size:30
Alignment explanation
Indices: 32168539--32168595 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
32168529 CCACCCAACT
32168539 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
32168568 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
32168596 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:32173532 original size:79 final size:81
Alignment explanation
Indices: 32173396--32173580 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
32173386 TTGAATGATG
*
32173396 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
32173460 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
32173475 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
32173537 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
32173555 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32173581 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:32173594 original size:40 final size:40
Alignment explanation
Indices: 32173397--32173580 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
32173387 TGAATGATGT
* * * *
32173397 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
32173437 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
32173477 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
32173515 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
32173556 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
32173581 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:32173602 original size:79 final size:79
Alignment explanation
Indices: 32173397--32173613 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
32173387 TGAATGATGT
** * * * **
32173397 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
32173460 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
32173477 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
32173542 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
32173556 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
32173614 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:32175630 original size:24 final size:24
Alignment explanation
Indices: 32175598--32175675 Score: 72
Period size: 24 Copynumber: 3.4 Consensus size: 24
32175588 TCAGTCAGAG
*
32175598 ATTTGTTGATCAAAAACGGAAGGA
1 ATTTCTTGATCAAAAACGGAAGGA
* ** * *
32175622 ATTTCTTGAGCTTAAGCAG-A-G-
1 ATTTCTTGATCAAAAACGGAAGGA
*
32175643 ATTTGTTGATCAAAAACGGAAGGA
1 ATTTCTTGATCAAAAACGGAAGGA
32175667 ATTTCTTGA
1 ATTTCTTGA
32175676 GCTTAAGCAA
Statistics
Matches: 38, Mismatches: 13, Indels: 6
0.67 0.23 0.11
Matches are distributed among these distances:
21 13 0.34
22 2 0.05
23 2 0.05
24 21 0.55
ACGTcount: A:0.36, C:0.10, G:0.23, T:0.31
Consensus pattern (24 bp):
ATTTCTTGATCAAAAACGGAAGGA
Found at i:32175657 original size:45 final size:45
Alignment explanation
Indices: 32175593--32175684 Score: 184
Period size: 45 Copynumber: 2.0 Consensus size: 45
32175583 GTATATCAGT
32175593 CAGAGATTTGTTGATCAAAAACGGAAGGAATTTCTTGAGCTTAAG
1 CAGAGATTTGTTGATCAAAAACGGAAGGAATTTCTTGAGCTTAAG
32175638 CAGAGATTTGTTGATCAAAAACGGAAGGAATTTCTTGAGCTTAAG
1 CAGAGATTTGTTGATCAAAAACGGAAGGAATTTCTTGAGCTTAAG
32175683 CA
1 CA
32175685 AGGTTATGTC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.28
Consensus pattern (45 bp):
CAGAGATTTGTTGATCAAAAACGGAAGGAATTTCTTGAGCTTAAG
Found at i:32181398 original size:40 final size:39
Alignment explanation
Indices: 32181314--32181498 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
32181304 TTGAATGATG
* * * *
32181314 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
32181354 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
32181394 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
32181433 TCCGGGTTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGCGAGTTACTA-AA
*
32181474 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
32181499 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 37 0.30
40 76 0.61
41 12 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32181452 original size:79 final size:81
Alignment explanation
Indices: 32181314--32181498 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
32181304 TTGAATGATG
*
32181314 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
32181378 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
32181393 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCTGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCC-GAAGGCA
*
32181455 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
32181473 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32181499 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 56 0.61
80 33 0.36
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:32181520 original size:79 final size:78
Alignment explanation
Indices: 32181315--32181521 Score: 206
Period size: 79 Copynumber: 2.6 Consensus size: 78
32181305 TGAATGATGT
** * * *
32181315 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTATATCCGG-TTAAGATCCGAAGGCATTT
*
32181379 GTGCGAGATACTAATT
63 GTGCGAGATACTAATA
** * *
32181395 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCTGAAGGCATTTG
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTATATCC-GGTTAAGATCC-GAAGGCATTTG
*
32181459 TGCGAGTTACT-ATAA
64 TGCGAGATACTAAT-A
*
32181474 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAA
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTATATCCGGTTAA
32181522 ATTCCAAAGG
Statistics
Matches: 109, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
78 5 0.05
79 60 0.55
80 44 0.40
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTATATCCGGTTAAGATCCGAAGGCATTTGTG
CGAGATACTAATA
Found at i:32184691 original size:24 final size:23
Alignment explanation
Indices: 32184643--32184692 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
32184633 AACTGAACTG
* *
32184643 TTTATTTTTCCTCTTTCTCTTTT
1 TTTATTTTTCCTCTTTCTATATT
32184666 TTTATTTTTTCCTTCTTT-TATATT
1 TTTA-TTTTTCC-TCTTTCTATATT
32184690 TTT
1 TTT
32184693 TCTCCTGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 4 0.17
24 14 0.61
25 5 0.22
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (23 bp):
TTTATTTTTCCTCTTTCTATATT
Found at i:32190258 original size:24 final size:24
Alignment explanation
Indices: 32190230--32190277 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
32190220 TGTAAAATGA
32190230 TGTTTTTAAATTAGGAGTTTATGT
1 TGTTTTTAAATTAGGAGTTTATGT
32190254 TGTTTTTAAATTAGGAGTTTATGT
1 TGTTTTTAAATTAGGAGTTTATGT
32190278 GACAGCCCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.21, T:0.54
Consensus pattern (24 bp):
TGTTTTTAAATTAGGAGTTTATGT
Found at i:32192573 original size:39 final size:39
Alignment explanation
Indices: 32192519--32192673 Score: 256
Period size: 39 Copynumber: 4.0 Consensus size: 39
32192509 AGTGATGAAG
*
32192519 TATATCCAGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
32192558 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* *
32192597 TATATCCGGACTTAAGGTCCGTAAGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* * *
32192636 TATAACCGGACTTAAGGTCTGCAGGCTACGTGCTGGAA
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAA
32192674 ATATGTCTGG
Statistics
Matches: 108, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 108 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
Found at i:32197013 original size:30 final size:30
Alignment explanation
Indices: 32196979--32197035 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
32196969 TTTTCGAGCA
* *
32196979 TAGGGGTAAAATGGTCATTTTGCCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
32197009 TAGGGGCAAAATGGTCATTTTACCAAA
1 TAGGGGCAAAATGGTCATTTTACCAAA
32197036 TATGTGAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:32197451 original size:47 final size:46
Alignment explanation
Indices: 32197377--32197742 Score: 258
Period size: 47 Copynumber: 7.7 Consensus size: 46
32197367 GTACTTGTGT
* *
32197377 GCCAGTGTAAGACTTGTCTGGGACATGCATCGGCCACAATATGATA
1 GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCACAATATGATA
32197423 GCCAGTGTAAGACCATGTCTAGGACATGCATCGGCCACAATATGATA
1 GCCAGTGTAAGA-CATGTCTAGGACATGCATCGGCCACAATATGATA
* ** * * **
32197470 GCCAGTGTAAGACCATGTCGAGGACATGGCATCAACGTAGAGA-ATGAGC
1 GCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGGC-CACA-ATATGATA
* * **
32197519 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACGATGATA
1 GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCAC-AATATGATA
* * * *
32197566 GCCAGTGTAAGACGTGTCTAGGACACGTATCGGCTA-AGAGT-TG-T-
1 GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCACA-A-TATGATA
* * * * * *
32197610 GCTAGTGTAAGACATGTCTAAGACATGCATCAG-CACGTATAGACGAGA
1 GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCAC--A-ATATGATA
* * * * * * *
32197658 GCTAGTATAAGACCATGTCTGGGACATGGCACCAGCCTCGATGATGATA
1 GCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCACAAT-ATGATA
**
32197707 GCCAGTGTAAGACCATGTCCGGGACATGGCATCGGC
1 GCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGGC
32197743 AACATATCCT
Statistics
Matches: 250, Mismatches: 52, Indels: 33
0.75 0.16 0.10
Matches are distributed among these distances:
43 1 0.00
44 27 0.11
45 2 0.01
46 17 0.07
47 99 0.40
48 30 0.12
49 65 0.26
50 7 0.03
51 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.21
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCACAATATGATA
Found at i:32197598 original size:142 final size:138
Alignment explanation
Indices: 32197377--32197725 Score: 391
Period size: 142 Copynumber: 2.5 Consensus size: 138
32197367 GTACTTGTGT
* * *
32197377 GCCAGTGTAAGACTTGTCTGGGACATGCATCGGCCAC-AATATGATAGCCAGTGTAAGACCATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAGATGATAGCCAGTGTAAGA-CATGT
* *
32197441 CTAGGACATGCATCGGCCACA-A-TATGATAGCCAGTGTAAGACCATGTCGAGGACATGGCATCA
65 CTAGGACACGCATCGGCCA-AGAGT-TG-T-GCCAGTGTAAGA-CATGTCGAAGACAT-GCATCA
* *
32197504 -ACGTAGAGAATGAGC
124 CACGTAGAG-ACGAGA
* *
32197519 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACGATGATAGCCAGTGTAAGACGTGTC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAGATGATAGCCAGTGTAAGACATGTC
* * * *
32197584 TAGGACACGTATCGGCTAAGAGTTGTGCTAGTGTAAGACATGTCTAAGACATGCATCAGCACGTA
66 TAGGACACGCATCGGCCAAGAGTTGTGCCAGTGTAAGACATGTCGAAGACATGCATCA-CACGTA
*
32197649 TAGACGAGA
130 GAGACGAGA
* * * * *
32197658 GCTAGTATAAGACCATGTCTGGGACATGGCACCAGCCTCGATGATGATAGCCAGTGTAAGACCAT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAAGATGATAGCCAGTGTAAGA-CAT
32197723 GTC
63 GTC
32197726 CGGGACATGG
Statistics
Matches: 179, Mismatches: 20, Indels: 16
0.83 0.09 0.07
Matches are distributed among these distances:
138 6 0.03
139 26 0.15
140 32 0.18
141 32 0.18
142 63 0.35
143 20 0.11
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.21
Consensus pattern (138 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAGATGATAGCCAGTGTAAGACATGTC
TAGGACACGCATCGGCCAAGAGTTGTGCCAGTGTAAGACATGTCGAAGACATGCATCACACGTAG
AGACGAGA
Found at i:32198593 original size:13 final size:13
Alignment explanation
Indices: 32198575--32198609 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
32198565 ATCAGTGTTG
32198575 TACACGGGCAGGC
1 TACACGGGCAGGC
32198588 TACACGGGCAGGC
1 TACACGGGCAGGC
32198601 TACACGGGC
1 TACACGGGC
32198610 TTGTGTCATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.23, C:0.31, G:0.37, T:0.09
Consensus pattern (13 bp):
TACACGGGCAGGC
Found at i:32198615 original size:68 final size:68
Alignment explanation
Indices: 32198520--32198647 Score: 202
Period size: 68 Copynumber: 1.9 Consensus size: 68
32198510 GTCAGTGTTG
* *
32198520 TACACGGGCAGGCCACACCGGCGTGTGTCATGGTCGTGTTTTAAAATCAGTGTTGTACACGGGCA
1 TACACGGGCAGGCCACACCGGCGTGTGTCATGGCCGTGTTTTAAAATCAGTGTTGCACACGGGCA
32198585 GGC
66 GGC
* * * *
32198588 TACACGGGCAGGCTACACGGGCTTGTGTCATGGCCGTGTTTTAAAGTCAGTGTTGCACAC
1 TACACGGGCAGGCCACACCGGCGTGTGTCATGGCCGTGTTTTAAAATCAGTGTTGCACAC
32198648 AGGCTAAGGG
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
68 54 1.00
ACGTcount: A:0.20, C:0.23, G:0.31, T:0.25
Consensus pattern (68 bp):
TACACGGGCAGGCCACACCGGCGTGTGTCATGGCCGTGTTTTAAAATCAGTGTTGCACACGGGCA
GGC
Found at i:32201987 original size:26 final size:25
Alignment explanation
Indices: 32201949--32202054 Score: 135
Period size: 26 Copynumber: 4.2 Consensus size: 25
32201939 TGGTACAAAT
32201949 TGAT-ATGGTTAGGTAAATGTTCCA
1 TGATAATGGTTAGGTAAATGTTCCA
* *
32201973 TGATAATGGATTAGGTAAATATTTCA
1 TGATAATGG-TTAGGTAAATGTTCCA
32201999 TGATAATGGGTTAGGTAAATG-TCCTA
1 TGATAAT-GGTTAGGTAAATGTTCC-A
*
32202025 TGATAATAGTTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
32202051 TGAT
1 TGAT
32202055 TGGCATTTCA
Statistics
Matches: 71, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
24 4 0.06
25 6 0.08
26 56 0.79
27 5 0.07
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.38
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTCCA
Found at i:32203569 original size:26 final size:25
Alignment explanation
Indices: 32203548--32203639 Score: 157
Period size: 25 Copynumber: 3.6 Consensus size: 25
32203538 TACCCTAGTA
32203548 GATAAATTACCGAAATACCCCTAGG
1 GATAAATTACCGAAATACCCCTAGG
32203573 GATAAATTACCGAAATACCCCTAGG
1 GATAAATTACCGAAATACCCCTAGG
*
32203598 GATAAATTACCGAAATACCCTTAGG
1 GATAAATTACCGAAATACCCCTAGG
*
32203623 GATAAATTGACCTAAAT
1 GATAAATT-ACCGAAAT
32203640 GCATGTTTGA
Statistics
Matches: 64, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
25 57 0.89
26 7 0.11
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.23
Consensus pattern (25 bp):
GATAAATTACCGAAATACCCCTAGG
Found at i:32209069 original size:26 final size:26
Alignment explanation
Indices: 32209040--32209146 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
32209030 TGGTACAAAT
32209040 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
32209066 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
32209092 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
32209117 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
32209143 TGAT
1 TGAT
32209147 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
25 24 0.32
26 51 0.68
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:32209142 original size:51 final size:52
Alignment explanation
Indices: 32209040--32209146 Score: 189
Period size: 51 Copynumber: 2.1 Consensus size: 52
32209030 TGGTACAAAT
32209040 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
* *
32209092 TGATAATGGGTTAGGTAAATGTT-CATGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
32209143 TGAT
1 TGAT
32209147 GGGCATTTCA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
51 30 0.57
52 23 0.43
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATATTCCA
Found at i:32210665 original size:26 final size:26
Alignment explanation
Indices: 32210636--32210685 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
32210626 TACAGTTTTA
32210636 CCCTAGTAGATAAATT-ACCGAAATAC
1 CCCTAG-AGATAAATTGACCGAAATAC
* *
32210662 CCCTAGGGATAAATTGACCTAAAT
1 CCCTAGAGATAAATTGACCGAAAT
32210686 GCATGTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 8 0.38
26 13 0.62
ACGTcount: A:0.40, C:0.22, G:0.14, T:0.24
Consensus pattern (26 bp):
CCCTAGAGATAAATTGACCGAAATAC
Found at i:32215201 original size:13 final size:13
Alignment explanation
Indices: 32215185--32215210 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32215175 ATATGTTTTA
32215185 TGATTGTTTTGGT
1 TGATTGTTTTGGT
32215198 TGATTGTTTTGGT
1 TGATTGTTTTGGT
32215211 ATGGGTTCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.31, T:0.62
Consensus pattern (13 bp):
TGATTGTTTTGGT
Found at i:32229204 original size:26 final size:26
Alignment explanation
Indices: 32229175--32229224 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
32229165 CTGGGCATTC
32229175 TATGTGTAC-ATTT-ATTCTCAGAAGTA
1 TATGTG-ACTATTTAATT-TCAGAAGTA
32229201 TATGTGACTATTTAATTTCAGAAG
1 TATGTGACTATTTAATTTCAGAAG
32229225 GAATTCTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 2 0.09
26 17 0.77
27 3 0.14
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (26 bp):
TATGTGACTATTTAATTTCAGAAGTA
Found at i:32234543 original size:13 final size:13
Alignment explanation
Indices: 32234527--32234552 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32234517 ATATGTTTTA
32234527 TGATTGTTTTGGT
1 TGATTGTTTTGGT
32234540 TGATTGTTTTGGT
1 TGATTGTTTTGGT
32234553 ATGGGTTCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.31, T:0.62
Consensus pattern (13 bp):
TGATTGTTTTGGT
Found at i:32239728 original size:43 final size:42
Alignment explanation
Indices: 32239603--32239750 Score: 165
Period size: 42 Copynumber: 3.5 Consensus size: 42
32239593 TTCGTATAAA
* * * *
32239603 ACCATATCTAGAATATGGCATCG-TCATGTGATTTCATATAAG
1 ACCATATCTGGGATATGGCATCGAT-ATGTGATCTCATGTAAG
* * *
32239645 ACCATATCTGGGATATGGTATCGATATGAGA-CATCGTGTAAG
1 ACCATATCTGGGATATGGCATCGATATGTGATC-TCATGTAAG
* * *
32239687 ACCATAGCTGGGCTATTGGCATCGATATGTGATCCCATGTAAG
1 ACCATATCTGGGATA-TGGCATCGATATGTGATCTCATGTAAG
32239730 ACCATATCTGGGATATGGCAT
1 ACCATATCTGGGATATGGCAT
32239751 TGGCATCTTA
Statistics
Matches: 87, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
42 51 0.59
43 35 0.40
44 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (42 bp):
ACCATATCTGGGATATGGCATCGATATGTGATCTCATGTAAG
Found at i:32243844 original size:6 final size:6
Alignment explanation
Indices: 32243833--32243858 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
32243823 GTGGAATGGA
32243833 GAGGAT GAGGAT GAGGAT GAGGAT GA
1 GAGGAT GAGGAT GAGGAT GAGGAT GA
32243859 AAATAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.50, T:0.15
Consensus pattern (6 bp):
GAGGAT
Found at i:32248728 original size:40 final size:40
Alignment explanation
Indices: 32248673--32248773 Score: 168
Period size: 40 Copynumber: 2.5 Consensus size: 40
32248663 TATTCGGATG
32248673 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
32248713 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
32248753 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
32248774 ATACTTGGGT
Statistics
Matches: 58, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
39 14 0.24
40 44 0.76
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:32255920 original size:2 final size:2
Alignment explanation
Indices: 32255908--32255943 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
32255898 ATTCAAGTCT
*
32255908 TC TC CC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
32255944 GTAGCGAAGC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (2 bp):
TC
Found at i:32264490 original size:39 final size:40
Alignment explanation
Indices: 32264373--32264502 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
32264363 ACTACTCGTT
* * * * * *
32264373 CAAATGCCTTCGGGACATAGCCTGG-TTATAGTAACTTGTA
1 CAAATGCCTTCGGGACTTAACCCGGAAT-TAGTAACTCGCA
*
32264413 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
* *
32264453 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
32264492 CAAATGCCTTC
1 CAAATGCCTTC
32264503 AGATCTTAGT
Statistics
Matches: 81, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 33 0.41
40 46 0.57
41 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
Found at i:32267133 original size:50 final size:47
Alignment explanation
Indices: 32266967--32267248 Score: 221
Period size: 50 Copynumber: 5.8 Consensus size: 47
32266957 TAAGGTTATT
* * * *
32266967 CGAGAGCTAATGTAAGACCATGTCTGGGACATGGCGTCGACCTCGATATA
1 CGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGA-CTCG--ATA
* * * *
32267017 TGATAGTCAGTGTAAGACCATGTCTGGGACATGGCATCTG-CT--ATGA
1 CGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATC-GACTCGAT-A
* * * *
32267063 -GATGTGTCAGTGTAAGACCATGTCTAGGACATGTCATCGACACAGATGGA
1 CGA-GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACTC-GAT--A
* * *
32267113 CGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTAGCCTCGATA
1 CGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCA-TCGACTCGATA
* * * *
32267161 CATGATAGTCAGTGTAAGACCATGTCTAGGACATGGCATCTACTTTGATA
1 C--GAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGAC-TCGATA
* * *
32267211 CGTGAGCTAGTGTAAAACCATGTCTAGGACATGGCATC
1 CGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATC
32267249 AGCTTCCTGC
Statistics
Matches: 189, Mismatches: 30, Indels: 28
0.77 0.12 0.11
Matches are distributed among these distances:
45 5 0.03
46 33 0.17
48 34 0.18
49 6 0.03
50 104 0.55
51 7 0.04
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (47 bp):
CGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACTCGATA
Found at i:32273140 original size:36 final size:35
Alignment explanation
Indices: 32273093--32273167 Score: 141
Period size: 36 Copynumber: 2.1 Consensus size: 35
32273083 AAATTCAAAG
32273093 TAAAACACAATTATACACTTGTAAATAATCTTGAT
1 TAAAACACAATTATACACTTGTAAATAATCTTGAT
32273128 ATAAAACACAATTATACACTTGTAAATAATCTTGAT
1 -TAAAACACAATTATACACTTGTAAATAATCTTGAT
32273164 TAAA
1 TAAA
32273168 CTAGATGTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
35 4 0.10
36 35 0.90
ACGTcount: A:0.48, C:0.13, G:0.05, T:0.33
Consensus pattern (35 bp):
TAAAACACAATTATACACTTGTAAATAATCTTGAT
Found at i:32279155 original size:48 final size:48
Alignment explanation
Indices: 32279103--32279431 Score: 408
Period size: 48 Copynumber: 6.8 Consensus size: 48
32279093 TACGAAGTCT
* * ** * *
32279103 CATATCAGTGTCGATGCCATGTATCAAACATGGTCTTACACTAGCACA
1 CATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACA
*
32279151 CATATC-ATCGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCACA
1 CATATCAAT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACA
* * *
32279199 GATATCAATGCCAATGCCATGTCCCAAACATGGTCTTACACTGGCACA
1 CATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACA
** ** *
32279247 CATATCAACACCGATGCCATGTCCCAGACATGGTCTTACTTTGGCATA
1 CATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACA
* *
32279295 CATATCAATACCGATGCCATGTCCCAGACATTGTCTTACACTGGCACA
1 CATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACA
* *
32279343 CATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT
1 CATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACA
* * * * * *
32279391 CATTTCGGATGCCAATGCCATGTCCTAGAGATGGTTTTACA
1 CATATC-AATGCCGATGCCATGTCCCAGACATGGTCTTACA
32279432 TGGGATCTCA
Statistics
Matches: 244, Mismatches: 34, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
47 1 0.00
48 212 0.87
49 31 0.13
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (48 bp):
CATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACA
Found at i:32283779 original size:378 final size:377
Alignment explanation
Indices: 32283080--32283842 Score: 1384
Period size: 378 Copynumber: 2.0 Consensus size: 377
32283070 ATTGATCAAT
32283080 ACACA-ACATATAACTTTATTTTCTCATACAAGATTCAATTTCACATAGATATCAATCAAACACA
1 ACACAGACATATAACTTTATTTTCTCATACAAGATTCAATTTCACATAGATATCAATCAAACACA
* *
32283144 ATCATATTGTCCTTTATAAAGTTCTATGAGACCTTAAAACATCTCAGAAGAGATTCGGGACTAAA
66 ATCATATTATCCCTTATAAAGTTCTATGAGACCTTAAAACATCTCAGAAGAGATTCGGGACTAAA
* *
32283209 TCGATAACATTTGCAAACTTTAGGAAACACATAAAAATTTCAAGCATTCAAGGGTTACACGCCCG
131 TCGATAACATTTGCAAACTTTAGGAAACACATAAAAATTTCAAGCATTCAAGGGTCACACGCCCA
*
32283274 TGTGAACAGACCGTCTACCTCACACGGCCACCAGACATGCCTGTGTCTAGGCGATGTGGAAATGG
196 TGTGAACAGACCGTCTACCTCACACGGCCACCAGACATGCCTGTGTCTAGGCGATGTGGAAATAG
*
32283339 GGCATACATACTGACTTACATCACACGGTCGGGGACACACCCGTGTGCCATGGCCATGTGAGAAC
261 GGCATACATACTAACTTACATCACACGGTCGGGGACACACCCGTGTGCCATGGCCATGTGAGAAC
32283404 TGGAGGGTATATTGACTTGGGTCACATGGCCAACCACATGTCCGTGTGCCAC
326 TGGAGGGTATATTGACTTGGGTCACATGGCCAACCACATGTCCGTGTGCCAC
32283456 ACACAGACATATAACTTTATTTTCTCATACAAGATTCAATTTCACATAGATATCAATCAAACACA
1 ACACAGACATATAACTTTATTTTCTCATACAAGATTCAATTTCACATAGATATCAATCAAACACA
32283521 ATCATATTATCCCTTATAAAGTTCTATGAGACCTTAAAACATGCTCAGAAGAGATTCGGGACTAA
66 ATCATATTATCCCTTATAAAGTTCTATGAGACCTTAAAACAT-CTCAGAAGAGATTCGGGACTAA
* * * *
32283586 ATCGATAACATTTGCAAACTTTAGGAAACACATAAAATTTTTAGGCATTCAAGGGTCGCACGCCC
130 ATCGATAACATTTGCAAACTTTAGGAAACACATAAAAATTTCAAGCATTCAAGGGTCACACGCCC
* *
32283651 ATGTGAACAGACCGTGTGCCTCACACGGCCACCAGACATGCCTGTGTCTAGGCGATGTGGAAATA
195 ATGTGAACAGACCGTCTACCTCACACGGCCACCAGACATGCCTGTGTCTAGGCGATGTGGAAATA
32283716 GGGCATACATACTAACTTACATCACACGGTCGGGGACACACCCGTGTGCCATGGCCATGTGAGAA
260 GGGCATACATACTAACTTACATCACACGGTCGGGGACACACCCGTGTGCCATGGCCATGTGAGAA
*
32283781 CTGGAGGGTATATTGACTTGGGTCACATGGCCAACCACATGTCTGTGTGCCAC
325 CTGGAGGGTATATTGACTTGGGTCACATGGCCAACCACATGTCCGTGTGCCAC
*
32283834 ACACGGACA
1 ACACAGACA
32283843 GTAAACACAC
Statistics
Matches: 371, Mismatches: 14, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
376 5 0.01
377 99 0.27
378 267 0.72
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (377 bp):
ACACAGACATATAACTTTATTTTCTCATACAAGATTCAATTTCACATAGATATCAATCAAACACA
ATCATATTATCCCTTATAAAGTTCTATGAGACCTTAAAACATCTCAGAAGAGATTCGGGACTAAA
TCGATAACATTTGCAAACTTTAGGAAACACATAAAAATTTCAAGCATTCAAGGGTCACACGCCCA
TGTGAACAGACCGTCTACCTCACACGGCCACCAGACATGCCTGTGTCTAGGCGATGTGGAAATAG
GGCATACATACTAACTTACATCACACGGTCGGGGACACACCCGTGTGCCATGGCCATGTGAGAAC
TGGAGGGTATATTGACTTGGGTCACATGGCCAACCACATGTCCGTGTGCCAC
Found at i:32285007 original size:43 final size:43
Alignment explanation
Indices: 32284903--32285010 Score: 112
Period size: 43 Copynumber: 2.5 Consensus size: 43
32284893 TATCCCGAAT
* * *
32284903 ATGGTCTTACATGTTATCACATATCGATGCCACTGTCCTAGAC
1 ATGGTCTTACATGTAATCACATATCGATGCCACTGTCCCAAAC
* * * * *
32284946 AGGGTCTTATACGAAATCATATAAT-GATGCCGA-TGTCCCAAAC
1 ATGGTCTTACATGTAATCACAT-ATCGATGCC-ACTGTCCCAAAC
32284989 ATGGTCTTACATGTAATCACAT
1 ATGGTCTTACATGTAATCACAT
32285011 CTCGGTAAAC
Statistics
Matches: 50, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
43 47 0.94
44 3 0.06
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.31
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCACATATCGATGCCACTGTCCCAAAC
Found at i:32296918 original size:30 final size:30
Alignment explanation
Indices: 32296873--32296932 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 30
32296863 AATTCAAATT
*
32296873 TTTTAAAAAATAAAA-TTATATATAAAAAA
1 TTTTAAAAAATAAAATTTAGATATAAAAAA
*
32296902 TTTTAAAATCATAAAATTTAGATATAAAAAA
1 TTTTAAAA-AATAAAATTTAGATATAAAAAA
32296933 ATATAGTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 8 0.30
30 6 0.22
31 13 0.48
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (30 bp):
TTTTAAAAAATAAAATTTAGATATAAAAAA
Found at i:32296930 original size:29 final size:29
Alignment explanation
Indices: 32296873--32296931 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
32296863 AATTCAAATT
*
32296873 TTTTAAAAAATAAAATTATATATAAAAAA
1 TTTTAAAAAATAAAATTATAGATAAAAAA
*
32296902 TTTTAAAATCATAAAATT-TAGATATAAAAA
1 TTTTAAAA-AATAAAATTATAGATA-AAAAA
32296932 AATATAGTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 13 0.50
30 13 0.50
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (29 bp):
TTTTAAAAAATAAAATTATAGATAAAAAA
Found at i:32300265 original size:26 final size:25
Alignment explanation
Indices: 32300215--32300262 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
32300205 AATGTGAAAG
*
32300215 GGGGTTGCTATGTGCTGATTCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCGA
32300240 GGGGTTGCTAAGTGCTGATTCCC
1 GGGGTTGCTAAGTGCTGATTCCC
32300263 CGATTCATTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.12, C:0.21, G:0.35, T:0.31
Consensus pattern (25 bp):
GGGGTTGCTAAGTGCTGATTCCCGA
Found at i:32300373 original size:103 final size:102
Alignment explanation
Indices: 32300137--32300501 Score: 601
Period size: 102 Copynumber: 3.6 Consensus size: 102
32300127 TGTATATAAA
** * * *
32300137 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGT-ATCCACCATATCTT
*
32300202 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATT--CCCG
65 TGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCCG
32300239 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCG-TATCCACCATATCTT
32300304 TGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
32300342 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCG-TATCCACCATATCTT
32300407 TGAAAT-AAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
32300444 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTATCCACCA
32300502 ATAACGGTAA
Statistics
Matches: 252, Mismatches: 8, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
101 32 0.13
102 144 0.57
103 76 0.30
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (102 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTATCCACCATATCTTT
GAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:32307195 original size:26 final size:26
Alignment explanation
Indices: 32307160--32307211 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
32307150 AATGTGAAAG
* *
32307160 GGGGTTGCTATGTGCTGATTTCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
32307186 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
32307212 TTTCATTGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.13, C:0.21, G:0.35, T:0.31
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:32307295 original size:104 final size:103
Alignment explanation
Indices: 32307082--32307450 Score: 598
Period size: 103 Copynumber: 3.6 Consensus size: 103
32307072 TGTATATAAA
** * * *
32307082 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
* *
32307146 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-TCCCG
65 TTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCCG
32307185 AGGGGTTGCTAAGTGCTGATTCCCCGATTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCATATCT
32307250 TTGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
32307289 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
*
32307354 TGAAATAAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* **
32307392 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGGGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
32307451 ATAACGGCTA
Statistics
Matches: 252, Mismatches: 11, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
103 180 0.71
104 71 0.28
105 1 0.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.31
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:32313527 original size:46 final size:46
Alignment explanation
Indices: 32313383--32313598 Score: 158
Period size: 46 Copynumber: 4.7 Consensus size: 46
32313373 CATGTGAGCT
* * * * * * *
32313383 AGTGTAAGACATGTCTGGGACATACATTAGCCAC-AATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCA-TCGGCACTGAGACGAGAACC
* *
32313429 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACTGAGACGAGAACC
*
32313477 AGTGTAAGACATGCCTGGGACATGCATCGGC-CTCG-GAACGTA-AACC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCACT-GAG-ACG-AGAACC
* * * * **
32313523 AGTGTAAGACATGTCTGAGACATACATCGGCTAC-GAGATGTG--TT
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-ACTGAGACGAGAACC
32313567 AGTGTAAGACCATGTCTGGGACATGGCATCGG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG
32313599 TATGGATATG
Statistics
Matches: 139, Mismatches: 19, Indels: 24
0.76 0.10 0.13
Matches are distributed among these distances:
44 9 0.06
45 16 0.12
46 60 0.43
47 34 0.24
48 20 0.14
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.21
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCACTGAGACGAGAACC
Found at i:32315466 original size:27 final size:27
Alignment explanation
Indices: 32315434--32315611 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
32315424 TAAATTGTAC
32315434 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
** ** *
32315461 TTCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32315487 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32315515 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
32315543 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32315570 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
32315597 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32315612 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32315549 original size:82 final size:81
Alignment explanation
Indices: 32315435--32315590 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
32315425 AAATTGTACA
** *
32315435 GCACTAAGTGTGCGATTTGACTATGTTTCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
32315499 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32315516 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
32315581 TGCGAGTTGA
65 TGCGAATTGA
32315591 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32315602 original size:82 final size:81
Alignment explanation
Indices: 32315431--32315611 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
32315421 GATTAAATTG
** *
32315431 TACAGCACTAAGTGTGCGATTTGACTATGTTTCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
32315496 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
32315512 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
32315576 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
32315594 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
32315612 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:32323399 original size:27 final size:27
Alignment explanation
Indices: 32323368--32323545 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32323358 TAAATTGTAC
32323368 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
32323395 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32323421 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32323449 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
32323477 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32323504 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
32323531 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32323546 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32323482 original size:82 final size:81
Alignment explanation
Indices: 32323369--32323524 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
32323359 AAATTGTACA
* *
32323369 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
32323433 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32323450 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
32323515 TGCGAGTTGA
65 TGCGAATTGA
32323525 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32323536 original size:82 final size:81
Alignment explanation
Indices: 32323365--32323545 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
32323355 GATTAAATTG
* *
32323365 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
32323430 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
32323446 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
32323510 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
32323528 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
32323546 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:32324916 original size:17 final size:17
Alignment explanation
Indices: 32324894--32324929 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
32324884 TGCATGGTGG
*
32324894 TAAGTTTCACCTATACT
1 TAAGTTACACCTATACT
32324911 TAAGTTACACCTATACT
1 TAAGTTACACCTATACT
32324928 TA
1 TA
32324930 CTTTGGTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.33, C:0.22, G:0.06, T:0.39
Consensus pattern (17 bp):
TAAGTTACACCTATACT
Found at i:32330394 original size:77 final size:69
Alignment explanation
Indices: 32330303--32330490 Score: 198
Period size: 70 Copynumber: 2.6 Consensus size: 69
32330293 GTATATAAAA
* * *
32330303 GGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCTT
1 GGGGTTGCTATGTGCTGATTCCCCG----A-GGG-GGTGCTAAGTGCGAT-ATCCACCATATATT
32330367 TGAAATGTGAAAG
59 TGAAA--TGAAAG
* ***
32330380 GGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCGATATCCATTGTATATTTGAAAT
1 GGGGTTGCTATGTGCTGATT-CCCCGAGGGGGTGCTAAGTGCGATATCCACCATATATTTGAAAT
32330445 GAAAG
65 GAAAG
*
32330450 GGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAAGTG
1 GGGGTTGCTATGTGCTGATT-CCCCGAGGGGGTGCTAAGTG
32330491 ATGATTCCCC
Statistics
Matches: 102, Mismatches: 7, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
70 47 0.46
72 26 0.25
73 4 0.04
74 1 0.01
77 19 0.19
78 5 0.05
ACGTcount: A:0.19, C:0.17, G:0.32, T:0.32
Consensus pattern (69 bp):
GGGGTTGCTATGTGCTGATTCCCCGAGGGGGTGCTAAGTGCGATATCCACCATATATTTGAAATG
AAAG
Found at i:32334992 original size:27 final size:27
Alignment explanation
Indices: 32334962--32335115 Score: 159
Period size: 27 Copynumber: 5.7 Consensus size: 27
32334952 ATATTAAGTC
* *
32334962 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
32334989 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
32335017 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* ** *
32335044 CGCACACTTAGTGC-GCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
** **
32335070 CGCACACTTAGTGC-ATCATTTTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
*
32335097 CGCACACTTAGTGCAACAT
1 CGCACACTTAGTGCTACAT
32335116 GGTCAAATCG
Statistics
Matches: 112, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
26 23 0.21
27 63 0.56
28 26 0.23
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:32335046 original size:55 final size:54
Alignment explanation
Indices: 32334962--32335115 Score: 168
Period size: 53 Copynumber: 2.9 Consensus size: 54
32334952 ATATTAAGTC
* *
32334962 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAATC-AACT
* * ** *
32335017 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTG-CGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAATCAACT
** ** *
32335070 CGCACACTTAGTGC-ATCATTTTCATTTCGCACACTTAGTGCAACAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACAT
32335116 GGTCAAATCG
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
52 1 0.01
53 37 0.44
54 9 0.11
55 37 0.44
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAATCAACT
Found at i:32335100 original size:53 final size:53
Alignment explanation
Indices: 32334962--32335126 Score: 188
Period size: 55 Copynumber: 3.1 Consensus size: 53
32334952 ATATTAAGTC
* * * **
32334962 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTG-CACATGGTCAAA-T
* *
32335017 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCACATGGTCAAAT
** **
32335070 CGCACACTTAGTGC-ATCATTTTCATTTCGCACACTTAGTGCAACATGGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAACTCGCACACTTAGTGC-ACATGGTCAAAT
32335124 CGC
1 CGC
32335127 CAAATCGCAC
Statistics
Matches: 95, Mismatches: 13, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
52 1 0.01
53 36 0.38
54 21 0.22
55 37 0.39
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (53 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCACATGGTCAAAT
Found at i:32344279 original size:41 final size:40
Alignment explanation
Indices: 32344216--32344365 Score: 164
Period size: 41 Copynumber: 3.7 Consensus size: 40
32344206 ATTTGAATGA
32344216 TATCCGGGCTAAGT--CGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
32344254 T-TCCCGGGCTAAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TAT-CCGGGCT-AAGTCCCGAAGGCATTTATGCTAGTGATTT
* * * *
32344295 TAATCCGGGCTAAGACCCGAAGGCGCATTTGTGCGAGTTGA-TA
1 T-ATCCGGGCTAAGTCCCGAA-G-GCATTTATGCTAG-TGATTT
*
32344338 TATCCGGGCTAAGAACCCGAAGGCATTT
1 TATCCGGGCTAAG-TCCCGAAGGCATTT
32344366 GTGCGAGTTT
Statistics
Matches: 98, Mismatches: 4, Indels: 17
0.82 0.03 0.14
Matches are distributed among these distances:
37 1 0.01
38 8 0.08
39 4 0.04
41 40 0.41
42 21 0.21
43 21 0.21
44 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
Found at i:32344343 original size:42 final size:42
Alignment explanation
Indices: 32344257--32344410 Score: 156
Period size: 41 Copynumber: 3.7 Consensus size: 42
32344247 GTGATTTTTC
* * * *
32344257 CCGGGCTAAAGTCCCGAAGGCATTTATGCTAG--TGATTTTAAT
1 CCGGGCT-AAGACCCGAAGGCATTTGTGCGAGTTTGA-TATAAT
32344299 CCGGGCTAAGACCCGAAGGCGCATTTGTGCGAG-TTGATAT-AT
1 CCGGGCTAAGACCCGAA-G-GCATTTGTGCGAGTTTGATATAAT
* *
32344341 CCGGGCTAAGAACCCGAAGGCATTTGTGCGAGTTTGCTATAAC
1 CCGGGCTAAG-ACCCGAAGGCATTTGTGCGAGTTTGATATAAT
* *
32344384 CCGGGTTAAGACCCG-AGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
32344411 TTGTGGTTAT
Statistics
Matches: 98, Mismatches: 8, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
41 33 0.34
42 32 0.33
43 30 0.31
44 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (42 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTTGATATAAT
Found at i:32344372 original size:41 final size:39
Alignment explanation
Indices: 32344215--32344410 Score: 155
Period size: 41 Copynumber: 4.8 Consensus size: 39
32344205 CATTTGAATG
* * *
32344215 ATATCCGGGCTAAG--TCGAAGGCATTTATGCTAGTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGAT
* * * * *
32344252 TTTTCCCGGGCTAAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATAT-CCGGGCT-AAGACCCGAAGGCATTTGTGCGAGTGA-T
*
32344294 TTAATCCGGGCTAAGACCCGAAGGCGCATTTGTGCGAGTTGAT
1 AT-ATCCGGGCTAAGACCCGAA-G-GCATTTGTGCGAG-TGAT
*
32344337 ATATCCGGGCTAAGAACCCGAAGGCATTTGTGCGAGTTTGCT
1 ATATCCGGGCTAAG-ACCCGAAGGCATTTGTGCGAG--TGAT
* * *
32344379 ATAACCCGGGTTAAGACCCG-AGGCAATTGTGC
1 AT-ATCCGGGCTAAGACCCGAAGGCATTTGTGC
32344411 TTGTGGTTAT
Statistics
Matches: 135, Mismatches: 12, Indels: 20
0.81 0.07 0.12
Matches are distributed among these distances:
37 2 0.01
38 7 0.05
39 3 0.02
41 54 0.40
42 35 0.26
43 31 0.23
44 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGAT
Found at i:32354958 original size:39 final size:39
Alignment explanation
Indices: 32354861--32355070 Score: 228
Period size: 40 Copynumber: 5.3 Consensus size: 39
32354851 TCTTCGGAAT
* * *
32354861 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATAT-ATCACTAGCACAAATGCCTTCGGGTC
* * * *
32354900 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTC-GGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
*
32354939 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* * *
32354979 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
* * *
32355019 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTC-GGAC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
32355058 TTAGCCCGGATAT
1 TTAGCCCGGATAT
32355071 CATTCAAATG
Statistics
Matches: 153, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
38 1 0.01
39 56 0.37
40 92 0.60
41 4 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.24
Consensus pattern (39 bp):
TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTC
Found at i:32354964 original size:79 final size:80
Alignment explanation
Indices: 32354881--32355069 Score: 215
Period size: 79 Copynumber: 2.4 Consensus size: 80
32354871 ATAACCACAA
* * * * *
32354881 GCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAGCAACTCGCACAAATGCCTTC-GGTCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAAGC-ACTAGCACAAATGCCTTCGGGACTTAGC
32354944 CCGGATATATCAACTC
65 CCGGATATATCAACTC
* * *
32354960 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAAGCACTAGCACAAATGCCTTCGGGACTTAGCC
* *
32355025 CGGATAAAATC-ACTA
66 CGGAT-ATATCAACTC
* * *
32355040 GCATAAATGCCTTC-GGACTTAGCCCGGATA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATA
32355070 TCATTCAAAT
Statistics
Matches: 95, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
79 58 0.61
80 33 0.35
81 4 0.04
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAAAAGCACTAGCACAAATGCCTTCGGGACTTAGCC
CGGATATATCAACTC
Found at i:32363019 original size:40 final size:40
Alignment explanation
Indices: 32362974--32363165 Score: 208
Period size: 40 Copynumber: 4.8 Consensus size: 40
32362964 ATAACCACAA
* * *
32362974 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* *
32363014 GCACAAATGCCTTCGGGTCTTAGCCCAGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
32363054 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * * *
32363094 GCATAAATGCCTTCGGGACTTAGCCCAGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
32363134 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
32363166 CATTCAAATG
Statistics
Matches: 138, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 1 0.01
40 133 0.96
41 4 0.03
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:32363059 original size:80 final size:80
Alignment explanation
Indices: 32362973--32363164 Score: 244
Period size: 80 Copynumber: 2.4 Consensus size: 80
32362963 TATAACCACA
* * * * * *
32362973 AGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAG
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAGC-ACTAGCACAAATGCCTTCGGGACTTAG
*
32363037 CCCAGAT-ATATCAACT
65 CCCAGATAAAATC-ACT
* * *
32363053 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAGCACTAGCACAAATGCCTTCGGGACTTAGC
32363118 CCAGATAAAATCACT
66 CCAGATAAAATCACT
* *
32363133 AGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATA
32363165 TCATTCAAAT
Statistics
Matches: 97, Mismatches: 13, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
80 90 0.93
81 7 0.07
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (80 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAGCACTAGCACAAATGCCTTCGGGACTTAGC
CCAGATAAAATCACT
Found at i:32364974 original size:46 final size:48
Alignment explanation
Indices: 32364907--32365076 Score: 167
Period size: 46 Copynumber: 3.6 Consensus size: 48
32364897 TGTCACAGCT
* *
32364907 AGTGTAAGA-TATGTCTGGGACATGCATCAGCTTCGGA-ACGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCTTCGGAGATGTAAGCC
* * **
32364953 AGTGTAAGA-CATGTCTGGGACATGTATC-GGTTAC-GAGATGT--GTT
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCTT-CGGAGATGTAAGCC
* *
32364997 AGTGTAAGACCATGTCTGGGACATGGCATCAGC-ACGGATATGTGAAAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCAGCTTCGGAGATGT--AAGCC
32365047 AGTGTAAGACCATGTCTGGGACATGACATC
1 AGTGTAAGACCATGTCTGGGACATG-CATC
32365077 GACACCTTAC
Statistics
Matches: 101, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
44 10 0.10
45 20 0.20
46 40 0.40
47 1 0.01
49 1 0.01
50 29 0.29
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGCATCAGCTTCGGAGATGTAAGCC
Found at i:32369357 original size:20 final size:20
Alignment explanation
Indices: 32369332--32369372 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
32369322 AACTTACTAA
32369332 GCTTCTATAAGCTTCCTCTT
1 GCTTCTATAAGCTTCCTCTT
32369352 GCTTCTATAAGCTTCCTCTT
1 GCTTCTATAAGCTTCCTCTT
32369372 G
1 G
32369373 TGTGTTTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.15, C:0.29, G:0.12, T:0.44
Consensus pattern (20 bp):
GCTTCTATAAGCTTCCTCTT
Found at i:32380227 original size:25 final size:26
Alignment explanation
Indices: 32380172--32380227 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 26
32380162 TTTAATTCAA
* *
32380172 AAAAATTATTAATAATTCAGTAAACTG
1 AAAAATTA-TAATAATTCAATAAAATG
* *
32380199 AAAAATTA-AATAATTGAATAAAATT
1 AAAAATTATAATAATTCAATAAAATG
32380224 AAAA
1 AAAA
32380228 TTTGGGAGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
25 17 0.68
27 8 0.32
ACGTcount: A:0.61, C:0.04, G:0.05, T:0.30
Consensus pattern (26 bp):
AAAAATTATAATAATTCAATAAAATG
Found at i:32380854 original size:18 final size:18
Alignment explanation
Indices: 32380828--32380862 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32380818 AATTAAATAT
32380828 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
* *
32380846 ATGCTTATTAATTTATT
1 ATGCATATTAAATTATT
32380863 TAAACAAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.06, G:0.06, T:0.51
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:32396040 original size:16 final size:16
Alignment explanation
Indices: 32396019--32396050 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
32396009 TATTTCACCC
*
32396019 AAATTAAATTGGATTA
1 AAATTAAATTGAATTA
32396035 AAATTAAATTGAATTA
1 AAATTAAATTGAATTA
32396051 TATTATGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (16 bp):
AAATTAAATTGAATTA
Found at i:32401009 original size:25 final size:26
Alignment explanation
Indices: 32400980--32401035 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 26
32400970 TTAGTTAGTA
*
32400980 TAAAATATT-AATAATTCAAT-AAAT
1 TAAAATATTAAATAATTAAATAAAAT
32401004 TGAAAA-ATTAAATAATTAAATAAAAT
1 T-AAAATATTAAATAATTAAATAAAAT
32401030 TAAAAT
1 TAAAAT
32401036 TTAGGAGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
24 4 0.15
25 18 0.67
26 5 0.19
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (26 bp):
TAAAATATTAAATAATTAAATAAAAT
Found at i:32401173 original size:21 final size:20
Alignment explanation
Indices: 32401144--32401185 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
32401134 GTGTCTTGAT
32401144 GGTGTGGTGCGA-TAAGCAAG
1 GGTGTGGTGCGAGT-AGCAAG
32401164 GGTGTTGGTGCGAGTAGCAAG
1 GGTG-TGGTGCGAGTAGCAAG
32401185 G
1 G
32401186 CAACAGCAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.20
21 15 0.75
22 1 0.05
ACGTcount: A:0.21, C:0.10, G:0.48, T:0.21
Consensus pattern (20 bp):
GGTGTGGTGCGAGTAGCAAG
Found at i:32415770 original size:12 final size:12
Alignment explanation
Indices: 32415755--32415781 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
32415745 CCTGTGTGTT
32415755 TACTAACATACA
1 TACTAACATACA
32415767 TACTAACATACA
1 TACTAACATACA
32415779 TAC
1 TAC
32415782 ATGTGCTTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.26, G:0.00, T:0.26
Consensus pattern (12 bp):
TACTAACATACA
Found at i:32415843 original size:88 final size:88
Alignment explanation
Indices: 32415693--32415857 Score: 321
Period size: 88 Copynumber: 1.9 Consensus size: 88
32415683 TGCACACGCC
*
32415693 CATGTGCTTGGCCGTGTCTATCACACGGCTGAGACACACGGCCGTGTCTTTGCCTGTGTGTTTAC
1 CATGTGCTTGGCCGTGTCTATCACACGGCTGAGACACACGGCCGTGTCTTTGCCTGTATGTTTAC
32415758 TAACATACATACTAACATACATA
66 TAACATACATACTAACATACATA
32415781 CATGTGCTTGGCCGTGTCTATCACACGGCTGAGACACACGGCCGTGTCTTTGCCTGTATGTTTAC
1 CATGTGCTTGGCCGTGTCTATCACACGGCTGAGACACACGGCCGTGTCTTTGCCTGTATGTTTAC
32415846 TAACATACATAC
66 TAACATACATAC
32415858 CACACACCCA
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 76 1.00
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (88 bp):
CATGTGCTTGGCCGTGTCTATCACACGGCTGAGACACACGGCCGTGTCTTTGCCTGTATGTTTAC
TAACATACATACTAACATACATA
Found at i:32416830 original size:94 final size:92
Alignment explanation
Indices: 32416663--32416888 Score: 312
Period size: 94 Copynumber: 2.4 Consensus size: 92
32416653 AGCATGTCTG
* * * * *
32416663 TGCCGATGCCATGTGCCAGACATGGTCTTACACTGACACATCTCGTAGCTGATGCATGTCTCAGA
1 TGCCGATGCCATGTCCCTGACATGGTCTTACACTGGCTCATCTCGTAGCTGATGCATGTCCCAGA
32416728 CATGTCTTACACTAGCACTAATCTTAA
66 CATGTCTTACACTAGCACTAATCTTAA
* *
32416755 TGCCGATGCCATGTCCCTGACATGGTCTTACACTGGCTC-TCATAATGT-GGTCGATGCATGTCC
1 TGCCGATGCCATGTCCCTGACATGGTCTTACACTGGCTCATC-T--CGTAGCT-GATGCATGTCC
*
32416818 CAGACATGTCTTACACTAGCACTCATCTTAA
62 CAGACATGTCTTACACTAGCACTAATCTTAA
* *
32416849 TACCGATGCCATGTCCCTGACATGGTCTTACACTAGCTCA
1 TGCCGATGCCATGTCCCTGACATGGTCTTACACTGGCTCA
32416889 CAATAACCCA
Statistics
Matches: 119, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
91 2 0.02
92 36 0.30
93 2 0.02
94 79 0.66
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (92 bp):
TGCCGATGCCATGTCCCTGACATGGTCTTACACTGGCTCATCTCGTAGCTGATGCATGTCCCAGA
CATGTCTTACACTAGCACTAATCTTAA
Found at i:32416856 original size:46 final size:48
Alignment explanation
Indices: 32416665--32416885 Score: 217
Period size: 47 Copynumber: 4.7 Consensus size: 48
32416655 CATGTCTGTG
* * **
32416665 CCGATGCCATGTGCCAGACATGGTCTTACACT-G-ACACATC-TCGTA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTTAATA
* * * *
32416710 GCTGATG-CATGTCTCAGACAT-GTCTTACACTAGCACTAATCTTAATG
1 -CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTTAATA
* * * * **
32416757 CCGATGCCATGTCCCTGACATGGTCTTACACTGGCTCTCATAATGTGGT-
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCAT-CT-TAATA
32416806 -CGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCATCTTAATA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTTAATA
*
32416851 CCGATGCCATGTCCCTGACATGGTCTTACACTAGC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGC
32416886 TCACAATAAC
Statistics
Matches: 140, Mismatches: 24, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
44 12 0.09
45 14 0.10
46 37 0.26
47 40 0.29
48 34 0.24
49 1 0.01
50 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTTAATA
Found at i:32421646 original size:24 final size:26
Alignment explanation
Indices: 32421619--32421677 Score: 68
Period size: 24 Copynumber: 2.3 Consensus size: 26
32421609 AATAATATAC
*
32421619 AATAATATATAATATGTATA-TAA-A
1 AATAATATATAATATATATATTAATA
* *
32421643 AATAATGTATAGTATATATATTAATA
1 AATAATATATAATATATATATTAATA
*
32421669 TATAATATA
1 AATAATATA
32421678 AGCACAAATA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
24 17 0.61
25 3 0.11
26 8 0.29
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (26 bp):
AATAATATATAATATATATATTAATA
Found at i:32421721 original size:30 final size:30
Alignment explanation
Indices: 32421687--32421748 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
32421677 AAGCACAAAT
*
32421687 ATAATAACCATATATAAATAATA-ATGTAAA
1 ATAATAACAATATA-AAATAATATATGTAAA
* *
32421717 ATAATAATAATATAAAATAATATATTTAAA
1 ATAATAACAATATAAAATAATATATGTAAA
32421747 AT
1 AT
32421749 GTAAGATTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 8 0.29
30 20 0.71
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (30 bp):
ATAATAACAATATAAAATAATATATGTAAA
Found at i:32421724 original size:16 final size:16
Alignment explanation
Indices: 32421703--32421738 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
32421693 ACCATATATA
*
32421703 AATAATAATGTAAAAT
1 AATAATAATATAAAAT
32421719 AATAATAATATAAAAT
1 AATAATAATATAAAAT
32421735 AATA
1 AATA
32421739 TATTTAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (16 bp):
AATAATAATATAAAAT
Found at i:32425705 original size:19 final size:19
Alignment explanation
Indices: 32425681--32425718 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
32425671 TCTATTGAAC
32425681 TCAATTTACATCCTAGGCA
1 TCAATTTACATCCTAGGCA
32425700 TCAATTTACATCCTAGGCA
1 TCAATTTACATCCTAGGCA
32425719 AAATTATCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.26, G:0.11, T:0.32
Consensus pattern (19 bp):
TCAATTTACATCCTAGGCA
Found at i:32427342 original size:45 final size:45
Alignment explanation
Indices: 32427281--32427389 Score: 146
Period size: 45 Copynumber: 2.4 Consensus size: 45
32427271 TAGACGAACT
* *
32427281 ACTCATTATTGCAGATAAAAATTGCTAATACGGTGTGGATAAACC
1 ACTCAATAGTGCAGATAAAAATTGCTAATACGGTGTGGATAAACC
* * * *
32427326 ACTCAATAGTGTAGATAGAAGTTGCTAATACGGTGTGGATAAATC
1 ACTCAATAGTGCAGATAAAAATTGCTAATACGGTGTGGATAAACC
* *
32427371 ACTCCATGGTGCAGATAAA
1 ACTCAATAGTGCAGATAAA
32427390 CCACTCAAAT
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 54 1.00
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.28
Consensus pattern (45 bp):
ACTCAATAGTGCAGATAAAAATTGCTAATACGGTGTGGATAAACC
Found at i:32433224 original size:15 final size:15
Alignment explanation
Indices: 32433201--32433258 Score: 55
Period size: 15 Copynumber: 3.9 Consensus size: 15
32433191 GTATCGTATC
*
32433201 TTGGGTTTCTTTATT
1 TTGGATTTCTTTATT
32433216 TTGGATTTCTTTATT
1 TTGGATTTCTTTATT
* ** *
32433231 CTGGGA-TTCTCAATC
1 -TTGGATTTCTTTATT
32433246 TTGGATTTCTTTA
1 TTGGATTTCTTTA
32433259 ATCGGTTTTC
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
14 4 0.12
15 25 0.76
16 4 0.12
ACGTcount: A:0.14, C:0.12, G:0.17, T:0.57
Consensus pattern (15 bp):
TTGGATTTCTTTATT
Found at i:32436032 original size:46 final size:46
Alignment explanation
Indices: 32435976--32436104 Score: 177
Period size: 46 Copynumber: 2.8 Consensus size: 46
32435966 TATTTGGGCA
* * * *
32435976 TCCGAACTCGTTGAGTTGAGTTCAAGTTCACTTATGGATGTGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
*
32436022 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
* ** *
32436068 TCTGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGG
32436105 GCGGGTTACA
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.19, C:0.18, G:0.29, T:0.33
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
Found at i:32449797 original size:21 final size:21
Alignment explanation
Indices: 32449772--32449811 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
32449762 TTGAAATGGC
32449772 CACACGGGCGTGCGCCCCTTT
1 CACACGGGCGTGCGCCCCTTT
*
32449793 CACACGGGCGTGTGCCCCT
1 CACACGGGCGTGCGCCCCT
32449812 ATGTCAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.10, C:0.42, G:0.30, T:0.17
Consensus pattern (21 bp):
CACACGGGCGTGCGCCCCTTT
Found at i:32450422 original size:75 final size:75
Alignment explanation
Indices: 32450334--32450487 Score: 272
Period size: 75 Copynumber: 2.1 Consensus size: 75
32450324 AAAAATACCC
*
32450334 ATATTTTTATAACTAAAACATTTTCAAACTATTCTTAAACCCTTTCTAACTCTAAAACCTCCCCA
1 ATATTTTTATAACTAAAACATTTTCAAACTATTCCTAAACCCTTTCTAACTCTAAAACCTCCCCA
*
32450399 GCTTCTTCAA
66 ACTTCTTCAA
* *
32450409 ATATTTTTATAACTAAAACATTTTTAAACTATTCCTAAACCCTTTCTAACTCTAAAACGTCCCCA
1 ATATTTTTATAACTAAAACATTTTCAAACTATTCCTAAACCCTTTCTAACTCTAAAACCTCCCCA
32450474 ACTTCTTCAA
66 ACTTCTTCAA
32450484 ATAT
1 ATAT
32450488 CAAAAAACCA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.36, C:0.25, G:0.01, T:0.38
Consensus pattern (75 bp):
ATATTTTTATAACTAAAACATTTTCAAACTATTCCTAAACCCTTTCTAACTCTAAAACCTCCCCA
ACTTCTTCAA
Found at i:32454580 original size:37 final size:37
Alignment explanation
Indices: 32454530--32454608 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
32454520 TTATTACGAA
* * *
32454530 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCAG
*
32454567 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCAG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCAG
32454604 GTCTT
1 GTCTT
32454609 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCAG
Found at i:32454805 original size:47 final size:47
Alignment explanation
Indices: 32454727--32455216 Score: 829
Period size: 47 Copynumber: 10.4 Consensus size: 47
32454717 CCCTTCGGGA
* * * * * * *
32454727 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32454774 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32454821 CTTA-CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32454867 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32454914 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32454961 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32455010 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32455057 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32455104 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32455151 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32455198 CTTATCACATATATACACT
1 CTTATCACATATATACACT
32455217 GTCTTGGCTG
Statistics
Matches: 422, Mismatches: 18, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
46 46 0.11
47 330 0.78
49 46 0.11
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32455032 original size:143 final size:141
Alignment explanation
Indices: 32454727--32455216 Score: 838
Period size: 143 Copynumber: 3.5 Consensus size: 141
32454717 CCCTTCGGGA
* * * * * * * * *
32454727 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
32454792 TTTCACATTCATCACATCGGCCATTAGGCCTTA-CACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
32454856 GGCCATTAGGC
131 GGCCATTAGGC
* *
32454867 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32454932 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCTATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
32454997 TCGGCCATTAGGC
129 TCGGCCATTAGGC
32455010 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32455075 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
32455140 GGCCATTAGGC
131 GGCCATTAGGC
*
32455151 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32455216 T
66 T
32455217 GTCTTGGCTG
Statistics
Matches: 332, Mismatches: 15, Indels: 5
0.94 0.04 0.01
Matches are distributed among these distances:
140 86 0.26
141 107 0.32
143 139 0.42
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:32458590 original size:26 final size:25
Alignment explanation
Indices: 32458552--32458603 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
32458542 AAGGAATTCG
32458552 CACACACACAGTGCCTCTAATTCATT
1 CACACACACAGTG-CTCTAATTCATT
* *
32458578 CACACACATAGTGCTCTTATTCATT
1 CACACACACAGTGCTCTAATTCATT
32458603 C
1 C
32458604 GTTATTACAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.29, C:0.33, G:0.08, T:0.31
Consensus pattern (25 bp):
CACACACACAGTGCTCTAATTCATT
Found at i:32458870 original size:40 final size:39
Alignment explanation
Indices: 32458782--32458961 Score: 193
Period size: 40 Copynumber: 4.5 Consensus size: 39
32458772 CCAGCATGAT
* * *
32458782 TGCTCTTCGGGACCTAGCTCGGATAATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGC-CGGAT-ATATCACTAGCACGAA
**
32458823 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGC-CGGATATATCACTAGCACGAA
* *
32458863 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAG-CCGGATATATCACTAGCACGAA
* *
32458903 TGCTCTTCGGAACTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGACTTAG-CCGGATAT-ATCAC-TAGCACGAA
*
32458944 AGC-CTTCGGGACTTAGCC
1 TGCTCTTCGGGACTTAGCC
32458962 CGGACATCAT
Statistics
Matches: 122, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
39 2 0.02
40 85 0.70
41 29 0.24
42 6 0.05
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
TGCTCTTCGGGACTTAGCCGGATATATCACTAGCACGAA
Found at i:32459317 original size:29 final size:29
Alignment explanation
Indices: 32459278--32459356 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
32459268 CTTAATAATC
*
32459278 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
32459308 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
32459337 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
32459357 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:32461299 original size:37 final size:37
Alignment explanation
Indices: 32461249--32461327 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
32461239 TTATTACGAA
* *
32461249 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
32461286 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
32461323 GTCTT
1 GTCTT
32461328 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:32461524 original size:47 final size:47
Alignment explanation
Indices: 32461446--32461933 Score: 834
Period size: 47 Copynumber: 10.4 Consensus size: 47
32461436 CCCTTCGGGA
* * * * * * *
32461446 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32461493 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32461540 CTTACCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32461587 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32461634 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32461681 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32461728 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32461775 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32461821 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32461868 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32461915 CTTATCACATATATACACT
1 CTTATCACATATATACACT
32461934 GTCTTGGCTG
Statistics
Matches: 420, Mismatches: 20, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
46 45 0.11
47 375 0.89
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32467336 original size:54 final size:54
Alignment explanation
Indices: 32467140--32467401 Score: 321
Period size: 54 Copynumber: 4.9 Consensus size: 54
32467130 TTTCCTTTTT
* * * * *
32467140 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATA
1 GAACTTATCAATGCCATGTCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
* * * * **
32467194 -AACTCACCAATGCTATATCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATA
1 GAACTTATCAATGCCATGTCTTGGCATGGTCTTACATGATATCC-TTGCCTTATA
* * * * *
32467247 GTAACTCATCAATGACATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAAA
1 G-AACTTATCAATGCCATGTCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
*
32467302 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
1 GAACTTATCAATGCCATGTCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
* *
32467356 GAACTTATCAATGCCATGCCTTGGCATGGTTTTACATGATATCCTT
1 GAACTTATCAATGCCATGTCTTGGCATGGTCTTACATGATATCCTT
32467402 ATCTTACCAA
Statistics
Matches: 181, Mismatches: 23, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
52 2 0.01
53 43 0.24
54 92 0.51
55 42 0.23
56 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.36
Consensus pattern (54 bp):
GAACTTATCAATGCCATGTCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
Done.