Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1462
Parameters: 2 7 7 80 10 50 1000
Length:  106782

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7237--7273
11
3.6
11
79
20
53
83
5
0
10
0.79
7237--7273
19
1.9
19
100
0
74
83
5
0
10
0.79
7307--7344
14
2.7
14
88
12
60
65
0
13
21
1.26
7310--7344
13
2.6
13
95
4
61
68
0
11
20
1.20
8256--8299
17
2.5
18
85
7
63
75
4
15
4
1.14
8269--8315
18
2.6
17
83
9
58
70
0
21
8
1.14
12521--13135
307
2.0
307
88
1
921
37
20
18
23
1.94
13204--13239
18
2.0
18
100
0
72
38
27
16
16
1.90
13566--13660
25
3.8
25
98
1
181
20
18
12
48
1.80
23750--23795
12
3.8
12
91
5
74
76
4
8
10
1.15
30783--30839
25
2.2
25
81
9
62
49
14
14
22
1.79
42659--42697
15
2.6
15
95
0
69
20
12
5
61
1.50
42737--42768
12
2.7
12
100
0
64
12
0
6
81
0.87
46363--46402
21
1.9
21
94
0
71
32
35
2
30
1.71
46702--46750
10
4.9
10
80
7
55
79
2
4
14
0.97
46702--46750
20
2.4
21
83
10
66
79
2
4
14
0.97
47701--47798
6
15.8
6
69
10
63
73
1
18
7
1.12
47701--47798
18
5.3
18
73
6
79
73
1
18
7
1.12
47760--47797
13
2.8
13
82
17
51
73
0
18
7
1.06
47701--47797
12
7.8
12
73
14
72
73
1
18
7
1.12
47816--47855
18
2.3
18
82
4
55
65
5
20
10
1.42
47816--47865
17
2.9
17
77
8
57
62
4
24
10
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47802--47897
36
2.8
34
79
14
92
56
4
26
13
1.55
47823--47897
16
4.6
16
72
26
52
56
2
29
12
1.49
49131--49169
20
1.9
21
89
5
62
23
28
12
35
1.91
49559--49584
13
2.0
13
100
0
52
46
0
7
46
1.31
57610--57647
20
1.9
20
88
0
58
31
36
13
18
1.89
66796--66842
20
2.3
20
85
0
67
29
36
12
21
1.91
69714--69765
23
2.3
22
75
21
54
9
23
1
65
1.32
72133--72193
10
6.1
10
74
12
54
32
13
24
29
1.93
72134--72194
20
3.0
20
83
9
79
32
13
26
27
1.93
74258--74292
18
1.9
18
88
11
54
22
20
0
57
1.41
74280--74384
6
17.2
6
66
9
52
7
17
3
71
1.25
74331--74384
6
9.2
6
75
4
56
3
14
5
75
1.12
75432--75475
12
3.8
12
84
6
63
11
0
4
84
0.77
75433--75475
11
3.8
11
90
6
68
11
0
4
83
0.78
76726--76787
10
6.2
10
73
12
56
33
12
24
29
1.92
76726--76787
20
3.1
19
82
15
72
33
12
24
29
1.92
81109--81136
14
2.0
14
100
0
56
42
7
21
28
1.79
81232--81287
24
2.3
24
81
0
67
69
0
19
10
1.17
81268--81305
18
2.1
18
90
0
58
57
0
26
15
1.38
81232--81287
12
4.7
12
76
8
51
69
0
19
10
1.17
83176--83222
11
4.2
11
89
5
76
68
8
2
21
1.27
83179--83222
23
1.9
23
95
0
79
72
6
2
18
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84084--84130
20
2.3
20
85
0
67
29
36
12
21
1.91
101009--101055
23
2.1
23
84
7
62
51
12
4
31
1.59
106160--106199
17
2.4
16
95
4
71
17
10
5
67
1.37
106241--106265
13
1.9
13
100
0
50
16
0
8
76
1.02

Tables:   1

The End!