Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold946

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 98488
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28


Found at i:83359 original size:2 final size:2

Alignment explanation


    Indices: 83352--83386  Score: 52
    Period size: 2  Copynumber: 17.0  Consensus size: 2

      83342 ATTATAAAAG

                                               *               
      83352 TA TA TA TA CTA TA TA TA TA TA TA TT TA TA TA TA TA
          1 TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA

      83387 CTAAAAAGGT


Statistics
Matches: 30,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
   2   28  0.93
   3    2  0.07

ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51


Consensus pattern (2 bp):   
TA

Done.