Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1396
Parameters: 2 7 7 80 10 50 1000
Length:  71863

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
203--383
39
4.7
40
82
7
205
24
21
28
25
1.99
255--416
79
2.1
78
83
5
202
26
19
27
25
1.99
255--416
39
4.1
40
80
9
156
26
19
27
25
1.99
5451--5478
3
9.3
3
100
0
56
32
0
0
67
0.91
27262--27300
5
7.8
5
100
0
78
41
17
0
41
1.50
28108--28146
17
2.4
17
82
4
53
71
5
0
23
1.05
28352--28393
4
10.2
4
94
5
75
23
28
0
47
1.52
29875--29927
27
2.0
27
85
7
72
24
15
13
47
1.81
30499--30566
22
3.0
23
83
12
70
41
4
4
50
1.42
30890--30915
11
2.4
11
100
0
52
26
0
0
73
0.84
31058--31102
16
2.8
16
86
3
54
8
20
22
48
1.76
32641--32675
17
2.0
17
88
5
52
20
0
8
71
1.11
32728--32760
17
1.9
17
93
0
57
45
3
0
51
1.16
33180--33249
11
6.4
11
79
0
77
71
8
1
18
1.19
33381--33413
14
2.4
14
94
0
57
18
18
12
51
1.76
33637--33705
31
2.2
31
94
0
120
55
26
15
2
1.55
46983--47115
61
2.2
58
85
6
178
42
3
3
50
1.35
47512--47563
26
2.0
26
82
10
63
15
19
9
55
1.67
60664--60707
22
2.0
22
82
8
54
40
0
4
54
1.21
60673--60717
22
2.0
22
86
0
63
37
2
4
55
1.32
64561--64667
40
2.7
40
84
5
119
25
27
20
27
1.99
64607--64785
40
4.5
39
82
11
188
26
27
21
24
1.99

Tables:   1

The End!