genome.fa.s81.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold512
Parameters: 2 7 7 80 10 50 1000
Length:  41198

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58--98	21	2.0	21	85	9	57	73	2	4	19	1.13
2692--2842	27	5.6	26	89	5	140	30	29	13	26	1.94
2692--2842	28	5.6	27	90	3	223	30	29	13	26	1.94
2692--2842	82	1.8	82	90	2	241	30	29	13	26	1.94
3163--3202	20	2.0	20	95	4	73	30	22	7	40	1.81
3165--3207	20	2.4	18	85	14	54	27	18	9	44	1.80
10760--10911	27	5.6	27	91	2	232	30	28	14	26	1.95
10760--10911	55	2.8	54	89	2	232	30	28	14	26	1.95
10760--10911	82	1.9	82	91	0	250	30	28	14	26	1.95
13527--13581	29	2.0	29	85	7	78	41	3	25	29	1.72
14078--14239	43	3.8	41	77	9	148	25	18	22	32	1.97
14078--14189	44	2.6	43	80	9	131	25	20	22	31	1.98
19848--20025	27	6.6	27	83	3	205	29	27	14	28	1.95
19869--20022	82	1.9	81	87	4	229	29	27	14	27	1.95
21813--21965	40	3.8	40	85	5	195	26	21	27	24	1.99
21830--21991	79	2.1	79	83	6	204	25	20	27	25	1.99
25387--25680	39	7.4	39	78	6	311	32	20	12	35	1.89
27172--27217	18	2.8	17	78	15	53	2	30	39	28	1.69
28539--28604	32	2.1	32	100	0	132	24	24	15	36	1.93
34621--34662	20	2.1	20	95	0	75	19	11	26	42	1.85
35556--35602	21	2.2	21	100	0	94	21	21	40	17	1.91
37191--37362	93	1.8	93	94	0	308	27	30	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37183--37358	46	3.8	46	81	10	214	28	29	21	21	1.98
39738--39824	30	3.0	29	77	14	90	57	16	16	10	1.65
39738--39815	15	5.4	15	77	11	83	58	14	16	10	1.62
39748--39824	15	5.2	15	77	10	70	57	15	15	11	1.66

Tables:   1

The End!