Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2563
Parameters: 2 7 7 80 10 50 1000
Length:  56441

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1999--2029
15
2.1
15
93
0
53
0
16
0
83
0.64
10627--10677
10
5.2
9
78
17
57
27
31
15
25
1.96
10627--10677
20
2.5
20
90
0
84
27
31
15
25
1.96
12443--12487
21
2.1
21
83
0
54
68
2
11
17
1.29
13496--13556
6
10.7
6
84
7
74
70
0
18
11
1.16
13495--13550
27
2.0
28
89
3
87
69
0
17
12
1.18
13502--13544
21
2.0
22
86
4
61
69
0
18
11
1.17
13495--13558
33
1.9
33
90
0
101
70
0
18
10
1.16
15767--15944
27
6.6
27
85
3
205
29
29
14
26
1.95
15767--15944
54
3.3
54
85
3
232
29
29
14
26
1.95
15788--15943
81
1.9
82
88
3
235
29
29
14
26
1.95
23940--24115
27
6.6
27
84
3
203
30
28
14
26
1.95
23961--24114
81
1.9
80
90
1
245
29
28
14
26
1.96
31067--31159
46
2.0
46
95
4
170
34
21
19
24
1.96
32915--32944
10
3.0
10
95
0
51
26
10
33
30
1.89
34823--34868
18
2.5
18
83
13
58
8
23
0
67
1.18
34896--34946
10
5.4
10
79
13
54
5
17
0
76
0.98
34897--34954
27
2.3
23
78
16
62
5
13
1
79
0.98
34911--34947
17
2.2
17
95
0
65
8
16
0
75
1.02
36117--36159
10
4.3
10
90
0
68
23
6
2
67
1.27
36321--36367
24
1.9
25
82
4
60
42
4
25
27
1.73
37840--37880
20
2.0
20
85
0
55
48
9
7
34
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38209--38255
24
1.9
25
82
4
60
42
4
25
27
1.73
40376--40553
27
6.6
27
82
3
115
29
28
15
26
1.96
40397--40552
82
1.9
81
88
3
233
29
28
15
26
1.96
40376--40552
54
3.3
54
81
6
205
29
28
15
26
1.96
48211--48388
27
6.6
27
82
3
115
29
28
15
26
1.96
48232--48387
82
1.9
81
88
3
233
29
28
15
26
1.96
48211--48387
54
3.3
54
81
6
205
29
28
15
26
1.96
52111--52151
20
2.0
20
85
0
55
48
9
7
34
1.64
53534--53572
19
2.1
19
100
0
78
30
10
10
48
1.70

Tables:   1

The End!