Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1304
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 40982
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Found at i:12587 original size:24 final size:22
Alignment explanation
Indices: 12560--12603 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
12550 CAACTTCTAA
*
12560 AGAAAACTCAAGAGAGAATTCTGG
1 AGAAAACCCAA-AGA-AATTCTGG
12584 AGAAAACCCAAAGAAATTCT
1 AGAAAACCCAAAGAAATTCT
12604 ACATCAACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 3 0.16
24 10 0.53
ACGTcount: A:0.50, C:0.16, G:0.18, T:0.16
Consensus pattern (22 bp):
AGAAAACCCAAAGAAATTCTGG
Found at i:14356 original size:18 final size:18
Alignment explanation
Indices: 14333--14368 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
14323 TTTCTAACTC
*
14333 ATTTTCTCTTCTTTTTCA
1 ATTTTCTCTTCTGTTTCA
*
14351 ATTTTCTTTTCTGTTTCA
1 ATTTTCTCTTCTGTTTCA
14369 CATTCCTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.19, G:0.03, T:0.67
Consensus pattern (18 bp):
ATTTTCTCTTCTGTTTCA
Found at i:14734 original size:20 final size:20
Alignment explanation
Indices: 14711--14764 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
14701 AGTTTTTCCC
*
14711 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
14731 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
14751 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
14765 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:14746 original size:30 final size:30
Alignment explanation
Indices: 14711--14784 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
14701 AGTTTTTCCC
14711 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
14741 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
14771 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
14785 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:14774 original size:20 final size:20
Alignment explanation
Indices: 14711--14775 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
14701 AGTTTTTCCC
* * * *
14711 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
14731 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
14750 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
14771 AGCTC
1 AGCTC
14776 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:16947 original size:12 final size:12
Alignment explanation
Indices: 16932--16970 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
16922 GCAAAAAAAG
16932 AAAAAAAAGTAA
1 AAAAAAAAGTAA
16944 AAAAAAAAG-AA
1 AAAAAAAAGTAA
16955 CAAAAAAAAGTGAA
1 -AAAAAAAAGT-AA
16969 AA
1 AA
16971 GTCTTGTGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 2 0.08
12 18 0.75
13 2 0.08
14 2 0.08
ACGTcount: A:0.82, C:0.03, G:0.10, T:0.05
Consensus pattern (12 bp):
AAAAAAAAGTAA
Found at i:16951 original size:24 final size:24
Alignment explanation
Indices: 16924--16970 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
16914 AGAAGTGAGC
*
16924 AAAAAAAGAAAAAAAAGTAAAAAA
1 AAAAAAACAAAAAAAAGTAAAAAA
* *
16948 AAAAGAACAAAAAAAAGTGAAAA
1 AAAAAAACAAAAAAAAGTAAAAA
16971 GTCTTGTGAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.83, C:0.02, G:0.11, T:0.04
Consensus pattern (24 bp):
AAAAAAACAAAAAAAAGTAAAAAA
Found at i:19761 original size:20 final size:20
Alignment explanation
Indices: 19715--19761 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
19705 AGCTCGTTTC
*
19715 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
19735 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
19755 CAGCTCA
1 CAGCTCA
19762 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:27368 original size:22 final size:24
Alignment explanation
Indices: 27341--27402 Score: 92
Period size: 22 Copynumber: 2.6 Consensus size: 24
27331 TAAATCAGGT
27341 CAAGACACATTAAAATC-GG-CAG
1 CAAGACACATTAAAATCTGGACAG
27363 CAAGACACATTAAAATCTGGCAACAG
1 CAAGACACATTAAAATCTGG--ACAG
27389 CAAGACACATTAAA
1 CAAGACACATTAAA
27403 CCTTTACTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
22 17 0.47
23 2 0.06
26 17 0.47
ACGTcount: A:0.48, C:0.23, G:0.15, T:0.15
Consensus pattern (24 bp):
CAAGACACATTAAAATCTGGACAG
Found at i:27759 original size:99 final size:99
Alignment explanation
Indices: 27637--27916 Score: 440
Period size: 99 Copynumber: 2.8 Consensus size: 99
27627 ATAAATACGC
*
27637 AAACTAAA-TAAGCTGAGTTCAAGCTGGTTCGAGTTCATGGAGCTAAAATTGAGCTGAGTTCAAC
1 AAACTAAATTAAGCTGAGTTCAAGCTGGTTCAAGTTCATGGAGCTAAAATTGAGCTGAGTTCAAC
27701 TTGCAAAAGATTGCATGGAGCTAAACAAATGCAT
66 TTGCAAAAGATTGCATGGAGCTAAACAAATGCAT
*
27735 AAACTAAATTAAGCTGAGTTCAAGCTGGTTCAAGTCCATGGAGCTAAAATTGAGCTGAGTTCAAC
1 AAACTAAATTAAGCTGAGTTCAAGCTGGTTCAAGTTCATGGAGCTAAAATTGAGCTGAGTTCAAC
* *
27800 TTGCAAGAGATTGCATGGAGCTAAATAAATGCAT
66 TTGCAAAAGATTGCATGGAGCTAAACAAATGCAT
* *
27834 AAACTAAATTAAGCTGAGTTTAAGCTGATTCAAAG-TCATGGAGCTAAAATTGAGCTGAGGTT-A
1 AAACTAAATTAAGCTGAGTTCAAGCTGGTTC-AAGTTCATGGAGCTAAAATTGAGCTGA-GTTCA
* * *
27897 GCTTGTAAAAAATTGCATGG
64 ACTTGCAAAAGATTGCATGG
27917 TGAAACCGTG
Statistics
Matches: 168, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
98 8 0.05
99 154 0.92
100 6 0.04
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.27
Consensus pattern (99 bp):
AAACTAAATTAAGCTGAGTTCAAGCTGGTTCAAGTTCATGGAGCTAAAATTGAGCTGAGTTCAAC
TTGCAAAAGATTGCATGGAGCTAAACAAATGCAT
Found at i:31893 original size:20 final size:20
Alignment explanation
Indices: 31870--31923 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
31860 AGTTTTTCCC
*
31870 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
31890 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
31910 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
31924 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:31905 original size:30 final size:30
Alignment explanation
Indices: 31870--31943 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
31860 AGTTTTTCCC
31870 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
31900 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
31930 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
31944 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:31933 original size:20 final size:20
Alignment explanation
Indices: 31870--31934 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
31860 AGTTTTTCCC
* * * *
31870 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
31890 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
31909 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
31930 AGCTC
1 AGCTC
31935 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:33546 original size:11 final size:11
Alignment explanation
Indices: 33530--33585 Score: 58
Period size: 11 Copynumber: 4.8 Consensus size: 11
33520 TAACAAAAAA
33530 AAAAAAAATTC
1 AAAAAAAATTC
*
33541 AAAAAAATTGATTG
1 AAAAAAA---ATTC
33555 AAAAAAAATTC
1 AAAAAAAATTC
* *
33566 AAAAAAAAGTG
1 AAAAAAAATTC
33577 AAAAAAAAT
1 AAAAAAAAT
33586 CGAGCAAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
11 27 0.73
14 10 0.27
ACGTcount: A:0.71, C:0.04, G:0.07, T:0.18
Consensus pattern (11 bp):
AAAAAAAATTC
Found at i:33583 original size:25 final size:24
Alignment explanation
Indices: 33527--33584 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
33517 GAGTAACAAA
*
33527 AAAAAAAAAAATTCAAAAAAATTG
1 AAAAAAAAAAATTCAAAAAAAGTG
**
33551 ATTGAAAAAAAATTCAAAAAAAAGTG
1 A-AAAAAAAAAATTC-AAAAAAAGTG
33577 AAAAAAAA
1 AAAAAAAA
33585 TCGAGCAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
24 1 0.04
25 16 0.59
26 10 0.37
ACGTcount: A:0.74, C:0.03, G:0.07, T:0.16
Consensus pattern (24 bp):
AAAAAAAAAAATTCAAAAAAAGTG
Found at i:33597 original size:28 final size:27
Alignment explanation
Indices: 33566--33625 Score: 84
Period size: 28 Copynumber: 2.2 Consensus size: 27
33556 AAAAAAATTC
*
33566 AAAAAAAAGTGAAAAAAAATCGAGCAAA
1 AAAAAAAAGTGAAAAAAAATCAAG-AAA
* *
33594 AAAAAGAGGTGAAAAAAAATCAAGAAA
1 AAAAAAAAGTGAAAAAAAATCAAGAAA
33621 AAAAA
1 AAAAA
33626 GTGAAAAGTC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 8 0.28
28 21 0.72
ACGTcount: A:0.73, C:0.05, G:0.15, T:0.07
Consensus pattern (27 bp):
AAAAAAAAGTGAAAAAAAATCAAGAAA
Found at i:34656 original size:11 final size:11
Alignment explanation
Indices: 34640--34669 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
34630 AAAGAAATTG
34640 AAAGAAAACAA
1 AAAGAAAACAA
*
34651 AAAGAAAACGA
1 AAAGAAAACAA
34662 AAAGAAAA
1 AAAGAAAA
34670 AGAAATTGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.80, C:0.07, G:0.13, T:0.00
Consensus pattern (11 bp):
AAAGAAAACAA
Found at i:34663 original size:6 final size:6
Alignment explanation
Indices: 34640--34746 Score: 65
Period size: 6 Copynumber: 17.7 Consensus size: 6
34630 AAAGAAATTG
* * ** *
34640 AAAG-A AAACAA AAAGAA AACG-A AAAGAA AAAGAA ATTGCA AAAGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
** ** * * *
34686 AAAGAA ATCGAA AAAGTG AGAGAA AAAGAA AATGAAGA AAAGAA AATTGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAG-A-A AAAGAA AA-AGAA
34737 AAAGAA AAAG
1 AAAGAA AAAG
34747 CGAAAAAAGA
Statistics
Matches: 73, Mismatches: 24, Indels: 9
0.69 0.23 0.08
Matches are distributed among these distances:
5 7 0.10
6 55 0.75
7 7 0.10
8 4 0.05
ACGTcount: A:0.71, C:0.04, G:0.19, T:0.07
Consensus pattern (6 bp):
AAAGAA
Found at i:34701 original size:18 final size:17
Alignment explanation
Indices: 34643--34699 Score: 78
Period size: 17 Copynumber: 3.3 Consensus size: 17
34633 GAAATTGAAA
* *
34643 GAAAACAAAAAGAAAAC
1 GAAAAGAAAAAGAAATC
*
34660 GAAAAGAAAAAGAAATT
1 GAAAAGAAAAAGAAATC
34677 GCAAAAGAAAAAGAAATC
1 G-AAAAGAAAAAGAAATC
34695 GAAAA
1 GAAAA
34700 AGTGAGAGAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
17 19 0.54
18 16 0.46
ACGTcount: A:0.72, C:0.07, G:0.16, T:0.05
Consensus pattern (17 bp):
GAAAAGAAAAAGAAATC
Found at i:34728 original size:14 final size:13
Alignment explanation
Indices: 34707--34744 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
34697 AAAAGTGAGA
34707 GAAAAAGAAAA-T
1 GAAAAAGAAAATT
34719 GAAGAAAAGAAAATT
1 G-A-AAAAGAAAATT
34734 GAAAAAGAAAA
1 GAAAAAGAAAA
34745 AGCGAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 1 0.04
13 10 0.43
14 10 0.43
15 2 0.09
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (13 bp):
GAAAAAGAAAATT
Found at i:34758 original size:21 final size:21
Alignment explanation
Indices: 34708--34758 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
34698 AAAGTGAGAG
*
34708 AAAAAGAAAATGAAGAAAAGA
1 AAAAAGAAAAAGAAGAAAAGA
** *
34729 AAATTGAAAAAGAA-AAAGCGA
1 AAAAAGAAAAAGAAGAAA-AGA
34750 AAAAAGAAA
1 AAAAAGAAA
34759 TTGAAAGAGA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
20 3 0.13
21 20 0.87
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.06
Consensus pattern (21 bp):
AAAAAGAAAAAGAAGAAAAGA
Found at i:34798 original size:33 final size:33
Alignment explanation
Indices: 34761--34823 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
34751 AAAAGAAATT
34761 GAAAGAGAG-CT-TGAAAAGAAATCAAGTGAAAAA
1 GAAAGAGAGTCTAT-AAAAGAAA-CAAGTGAAAAA
*
34794 GAAAGAGAGTCTATAAAAGAAACGAGTGAA
1 GAAAGAGAGTCTATAAAAGAAACAAGTGAA
34824 GTGAGTAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.56, C:0.06, G:0.25, T:0.13
Consensus pattern (33 bp):
GAAAGAGAGTCTATAAAAGAAACAAGTGAAAAA
Found at i:36623 original size:20 final size:20
Alignment explanation
Indices: 36600--36653 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
36590 AGTTTTTCCC
*
36600 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
36620 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
36640 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
36654 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:36635 original size:30 final size:30
Alignment explanation
Indices: 36600--36673 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
36590 AGTTTTTCCC
36600 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
36630 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
36660 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
36674 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:36663 original size:20 final size:20
Alignment explanation
Indices: 36600--36664 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
36590 AGTTTTTCCC
* * * *
36600 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
36620 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
36639 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
36660 AGCTC
1 AGCTC
36665 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:39999 original size:20 final size:20
Alignment explanation
Indices: 39976--40021 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
39966 TGGTTAAGAT
*
39976 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
39996 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
40016 TGAGCT
1 TGAGCT
40022 AGAAACGAGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.22, C:0.13, G:0.35, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Done.