Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1628
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 134877
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:1098 original size:22 final size:22
Alignment explanation
Indices: 1068--1111 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
1058 TTTTGGTATT
1068 GGGAATTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
*
1090 GGGATTTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
1112 TGGTTCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.36, T:0.25
Consensus pattern (22 bp):
GGGAATTGGTACGAAATGGTAA
Found at i:2682 original size:20 final size:20
Alignment explanation
Indices: 2659--2705 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
2649 GGGTTAAGAT
*
2659 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
2679 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
2699 TGAGCTG
1 TGAGCTG
2706 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:4427 original size:48 final size:48
Alignment explanation
Indices: 4375--4480 Score: 137
Period size: 48 Copynumber: 2.2 Consensus size: 48
4365 TTGTCTTTTC
*
4375 TTTCTTTTTCAATTT-TCTCT-TTTTCCTCACA-CTTTTGTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTT--TCACATCCTTT-TTCAATCTCAA
* *
4423 TTTCTTTTTCGATTTCTTTCTCTTTTTCACATCCTTTTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
4471 TTTCTTTTTC
1 TTTCTTTTTC
4481 CATGACACTC
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.14, C:0.25, G:0.02, T:0.59
Consensus pattern (48 bp):
TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
Found at i:8104 original size:20 final size:20
Alignment explanation
Indices: 8081--8127 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
8071 GGGTTAAGAT
*
8081 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
8101 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
8121 TGAGCTG
1 TGAGCTG
8128 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:8863 original size:31 final size:32
Alignment explanation
Indices: 8818--8884 Score: 77
Period size: 31 Copynumber: 2.1 Consensus size: 32
8808 ACATGCATGC
*
8818 ACCTTGCTAAAATGAATCTCCA-A-ATTCGGCTA
1 ACCTTGCTAAAATG-ATC-CCACACATTCGGCCA
*
8850 ACCTTG-TTAAATGATCCCACACATTCGGCCA
1 ACCTTGCTAAAATGATCCCACACATTCGGCCA
8881 ACCT
1 ACCT
8885 ATATAAATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
29 3 0.10
30 4 0.13
31 18 0.58
32 6 0.19
ACGTcount: A:0.31, C:0.30, G:0.12, T:0.27
Consensus pattern (32 bp):
ACCTTGCTAAAATGATCCCACACATTCGGCCA
Found at i:24962 original size:23 final size:22
Alignment explanation
Indices: 24910--24962 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
24900 TCCACGTCTT
*
24910 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
24932 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
24955 TTTCTTTT
1 TTTCTTTT
24963 TCACTCTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:29697 original size:21 final size:21
Alignment explanation
Indices: 29671--29733 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
29661 TTGGTATTTG
29671 GGAATTGGTACAAAATGGTAT
1 GGAATTGGTACAAAATGGTAT
**
29692 GGAATTGGTATGAAATGGTAT
1 GGAATTGGTACAAAATGGTAT
* *
29713 GGTATTTGGTACAAATTGGTA
1 GG-AATTGGTACAAAATGGTA
29734 ATGGTTCAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
21 21 0.60
22 14 0.40
ACGTcount: A:0.33, C:0.03, G:0.30, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACAAAATGGTAT
Found at i:30827 original size:10 final size:10
Alignment explanation
Indices: 30812--30853 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
30802 TTTGCAAGTT
30812 TTGAGCTAAA
1 TTGAGCTAAA
* *
30822 TTGAGCTGAT
1 TTGAGCTAAA
*
30832 TTGAGCT-CA
1 TTGAGCTAAA
30841 TTGAGCTAAA
1 TTGAGCTAAA
30851 TTG
1 TTG
30854 GAAGTTAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
9 7 0.27
10 19 0.73
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.36
Consensus pattern (10 bp):
TTGAGCTAAA
Found at i:31518 original size:20 final size:21
Alignment explanation
Indices: 31483--31521 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
31473 CAGCTCGTTG
31483 AGCTCAATTCAGCTCATTTCC
1 AGCTCAATTCAGCTCATTTCC
*
31504 AGCTC-ATTGAGCTCATTT
1 AGCTCAATTCAGCTCATTT
31522 GCTTGTTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.23, C:0.28, G:0.13, T:0.36
Consensus pattern (21 bp):
AGCTCAATTCAGCTCATTTCC
Found at i:31929 original size:13 final size:13
Alignment explanation
Indices: 31911--31936 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
31901 TGTGTCCTAA
31911 TATGAATTAAATT
1 TATGAATTAAATT
31924 TATGAATTAAATT
1 TATGAATTAAATT
31937 GCTTTCAGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (13 bp):
TATGAATTAAATT
Found at i:34050 original size:15 final size:17
Alignment explanation
Indices: 34020--34054 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 17
34010 GCGAACGAGA
34020 AAATGAAAATGAAAAAG
1 AAATGAAAATGAAAAAG
34037 AAATG-AAA-GAAAAAG
1 AAATGAAAATGAAAAAG
34052 AAA
1 AAA
34055 ATGAGTGTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 10 0.56
16 3 0.17
17 5 0.28
ACGTcount: A:0.74, C:0.00, G:0.17, T:0.09
Consensus pattern (17 bp):
AAATGAAAATGAAAAAG
Found at i:34089 original size:24 final size:24
Alignment explanation
Indices: 34062--34138 Score: 64
Period size: 24 Copynumber: 3.2 Consensus size: 24
34052 AAAATGAGTG
34062 TGAGATAGAAAAGAAAATTGAAAA
1 TGAGATAGAAAAGAAAATTGAAAA
* * * * ***
34086 TGAGATTGAGAATAAAAATGAGTG
1 TGAGATAGAAAAGAAAATTGAAAA
* *
34110 TGAAAAAGAAAAGAAAATTGAAAA
1 TGAGATAGAAAAGAAAATTGAAAA
*
34134 AGAGA
1 TGAGA
34139 GTGAGATTAA
Statistics
Matches: 35, Mismatches: 18, Indels: 0
0.66 0.34 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.60, C:0.00, G:0.23, T:0.17
Consensus pattern (24 bp):
TGAGATAGAAAAGAAAATTGAAAA
Found at i:34111 original size:48 final size:48
Alignment explanation
Indices: 34052--34149 Score: 151
Period size: 48 Copynumber: 2.0 Consensus size: 48
34042 AAAGAAAAAG
* * * *
34052 AAAATGAGTGTGAGATAGAAAAGAAAATTGAAAATGAGATTGAGAATA
1 AAAATGAGTGTGAAAAAGAAAAGAAAATTGAAAAAGAGAGTGAGAATA
*
34100 AAAATGAGTGTGAAAAAGAAAAGAAAATTGAAAAAGAGAGTGAGATTA
1 AAAATGAGTGTGAAAAAGAAAAGAAAATTGAAAAAGAGAGTGAGAATA
34148 AA
1 AA
34150 GGAAGAAATG
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.57, C:0.00, G:0.24, T:0.18
Consensus pattern (48 bp):
AAAATGAGTGTGAAAAAGAAAAGAAAATTGAAAAAGAGAGTGAGAATA
Found at i:34570 original size:16 final size:15
Alignment explanation
Indices: 34551--34580 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
34541 AGTATCAATT
34551 TTTGATTGGTGATGAC
1 TTTGATTGG-GATGAC
34567 TTTGATTGGGATGA
1 TTTGATTGGGATGA
34581 TGGATTGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.20, C:0.03, G:0.33, T:0.43
Consensus pattern (15 bp):
TTTGATTGGGATGAC
Found at i:38690 original size:9 final size:9
Alignment explanation
Indices: 38658--38698 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
38648 TTTTATTAAA
*
38658 TTTTGTCTT
1 TTTTGACTT
*
38667 TTTTGATTT
1 TTTTGACTT
38676 TTTTGACTT
1 TTTTGACTT
38685 TTTTGACTAT
1 TTTTGACT-T
38695 TTTT
1 TTTT
38699 TTGTGGGATT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
9 23 0.82
10 5 0.18
ACGTcount: A:0.10, C:0.07, G:0.10, T:0.73
Consensus pattern (9 bp):
TTTTGACTT
Found at i:43760 original size:22 final size:22
Alignment explanation
Indices: 43730--43773 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
43720 TTTGGTATTT
43730 GGGAATTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
*
43752 GGGATTTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
43774 TGGTTCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.36, T:0.25
Consensus pattern (22 bp):
GGGAATTGGTACGAAATGGTAA
Found at i:47436 original size:22 final size:22
Alignment explanation
Indices: 47406--47449 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
47396 TTTGGTATTT
47406 GGGAATTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
*
47428 GGGATTTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
47450 TGGTTCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.36, T:0.25
Consensus pattern (22 bp):
GGGAATTGGTACGAAATGGTAA
Found at i:57006 original size:11 final size:12
Alignment explanation
Indices: 56981--57021 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
56971 TAGTTTCTCG
* *
56981 AAAAAAACTCGA
1 AAAAAAATTCAA
56993 AAAAAAATTCAA
1 AAAAAAATTCAA
57005 AAAAAAATTCAA
1 AAAAAAATTCAA
57017 AAAAA
1 AAAAA
57022 GAACTAGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.76, C:0.10, G:0.02, T:0.12
Consensus pattern (12 bp):
AAAAAAATTCAA
Found at i:57097 original size:13 final size:13
Alignment explanation
Indices: 57062--57116 Score: 74
Period size: 13 Copynumber: 4.0 Consensus size: 13
57052 GGATATCAAG
57062 TTGTGAAAATAAAAA
1 TTGTG-AAA-AAAAA
*
57077 TTTTTGAAAAAAAA
1 -TTGTGAAAAAAAA
57091 TTGTGAAAAAAAA
1 TTGTGAAAAAAAA
57104 TTGTGAAAAAAAA
1 TTGTGAAAAAAAA
57117 GAGAGAGCTA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
13 25 0.68
14 5 0.14
15 3 0.08
16 4 0.11
ACGTcount: A:0.60, C:0.00, G:0.13, T:0.27
Consensus pattern (13 bp):
TTGTGAAAAAAAA
Found at i:60797 original size:11 final size:11
Alignment explanation
Indices: 60781--60825 Score: 81
Period size: 11 Copynumber: 4.0 Consensus size: 11
60771 GAGGATATTC
60781 GAAAAAAAATT
1 GAAAAAAAATT
60792 GAAAAAAAATT
1 GAAAAAAAATT
60803 GAAAAAAAAATT
1 G-AAAAAAAATT
60815 GAAAAAAAATT
1 GAAAAAAAATT
60826 CGAAGTATTA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
11 22 0.67
12 11 0.33
ACGTcount: A:0.73, C:0.00, G:0.09, T:0.18
Consensus pattern (11 bp):
GAAAAAAAATT
Found at i:60799 original size:12 final size:12
Alignment explanation
Indices: 60782--60823 Score: 77
Period size: 12 Copynumber: 3.6 Consensus size: 12
60772 AGGATATTCG
60782 AAAAAAAATTG-
1 AAAAAAAATTGA
60793 AAAAAAAATTGA
1 AAAAAAAATTGA
60805 AAAAAAAATTGA
1 AAAAAAAATTGA
60817 AAAAAAA
1 AAAAAAA
60824 TTCGAAGTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
11 11 0.37
12 19 0.63
ACGTcount: A:0.79, C:0.00, G:0.07, T:0.14
Consensus pattern (12 bp):
AAAAAAAATTGA
Found at i:60808 original size:23 final size:23
Alignment explanation
Indices: 60782--60825 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
60772 AGGATATTCG
60782 AAAAAAAATTGAAAAAAAATTGA
1 AAAAAAAATTGAAAAAAAATTGA
60805 AAAAAAAATTGAAAAAAAATT
1 AAAAAAAATTGAAAAAAAATT
60826 CGAAGTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.75, C:0.00, G:0.07, T:0.18
Consensus pattern (23 bp):
AAAAAAAATTGAAAAAAAATTGA
Found at i:66264 original size:21 final size:23
Alignment explanation
Indices: 66219--66265 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
66209 TCACCTGCAA
* *
66219 TAAACACATTAAAATGAGTTTAT
1 TAAACACATTAAAATCAGCTTAT
66242 TAAACACATTAAAA-CA-CTTAT
1 TAAACACATTAAAATCAGCTTAT
66263 TAA
1 TAA
66266 TCATAACACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 1 0.05
23 14 0.64
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (23 bp):
TAAACACATTAAAATCAGCTTAT
Found at i:69834 original size:20 final size:20
Alignment explanation
Indices: 69782--69836 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
69772 ACGAGTTAAA
* * *
69782 TTGAGCTTGAATAAGCTGAC
1 TTGAGCTCGAATGAGCTAAC
*
69802 TTGAGCACGAATGAGCTAAC
1 TTGAGCTCGAATGAGCTAAC
69822 TTGAGCTCGAATGAG
1 TTGAGCTCGAATGAG
69837 TTGAACCACA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.25
Consensus pattern (20 bp):
TTGAGCTCGAATGAGCTAAC
Found at i:70750 original size:16 final size:15
Alignment explanation
Indices: 70724--70753 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
70714 TTTCAATCCA
70724 TCATCCCAATCAAAG
1 TCATCCCAATCAAAG
70739 TCATCACCAATCAAA
1 TCATC-CCAATCAAA
70754 AATTGATACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.33, G:0.03, T:0.20
Consensus pattern (15 bp):
TCATCCCAATCAAAG
Found at i:71201 original size:54 final size:50
Alignment explanation
Indices: 71130--71260 Score: 124
Period size: 48 Copynumber: 2.6 Consensus size: 50
71120 ATATCACTCA
* * * * *
71130 TTTCTTTTGCACTCTCGTTTCTTTCTTCAATCTTACTCTCTTTTTCAATTTTCT
1 TTTCTTTTTCACACTCGTTTCTTTATTC--TC--AATCTCATTTTCAATTTTCT
71184 TTTCTTTTTCACACTCG-TT-TTTATTCTCAATCTCATTTTCAATTTTCT
1 TTTCTTTTTCACACTCGTTTCTTTATTCTCAATCTCATTTTCAATTTTCT
* * *
71232 TTTCTATCTCACACTCATCTTCTTT-TTCT
1 TTTCTTTTTCACACTCGT-TTCTTTATTCT
71261 TTCATTTCTT
Statistics
Matches: 66, Mismatches: 8, Indels: 10
0.79 0.10 0.12
Matches are distributed among these distances:
48 32 0.48
50 8 0.12
51 3 0.05
52 6 0.09
53 2 0.03
54 15 0.23
ACGTcount: A:0.14, C:0.26, G:0.02, T:0.58
Consensus pattern (50 bp):
TTTCTTTTTCACACTCGTTTCTTTATTCTCAATCTCATTTTCAATTTTCT
Found at i:76975 original size:24 final size:25
Alignment explanation
Indices: 76922--76975 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 25
76912 AACAAATTCT
* *
76922 TTTTTTCATTTTCATCACTCGTTTC
1 TTTTTTCATTTTAATCACTCGTCTC
76947 -TTTTTC-TTTTGAATCACTC-TCTC
1 TTTTTTCATTTT-AATCACTCGTCTC
76970 TTTTTT
1 TTTTTT
76976 TATCACTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 7 0.28
24 18 0.72
ACGTcount: A:0.11, C:0.22, G:0.04, T:0.63
Consensus pattern (25 bp):
TTTTTTCATTTTAATCACTCGTCTC
Found at i:79254 original size:15 final size:14
Alignment explanation
Indices: 79225--79253 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
79215 CTAGACCGTA
79225 TGCAATTTTTTTTT
1 TGCAATTTTTTTTT
79239 TGCAATTTTTTTTT
1 TGCAATTTTTTTTT
79253 T
1 T
79254 TTTTTTTCGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.72
Consensus pattern (14 bp):
TGCAATTTTTTTTT
Found at i:79256 original size:21 final size:21
Alignment explanation
Indices: 79230--79273 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
79220 CCGTATGCAA
*
79230 TTTTTTTTTTGC-AATTTTTT
1 TTTTTTTTTTTCGAATTTTTT
*
79250 TTTTTTTTTTTCGGATTTTTT
1 TTTTTTTTTTTCGAATTTTTT
79271 TTT
1 TTT
79274 CAAAACTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.07, C:0.05, G:0.07, T:0.82
Consensus pattern (21 bp):
TTTTTTTTTTTCGAATTTTTT
Found at i:81858 original size:56 final size:56
Alignment explanation
Indices: 81753--81859 Score: 153
Period size: 56 Copynumber: 1.9 Consensus size: 56
81743 ATTAATGCCA
* * * * *
81753 TCCATGCATGGTGAATATCTCATTTAATTCATGTTTTGCTTCCCTTTAAATGCCGT
1 TCCATACATGGTGAACATCTCATTTAATTCATGTTTTGCTGCACATTAAATGCCGT
81809 TCCATACATGG-GAACATCTCATTTAATTCATGTCTTTGCTGCACATTAAAT
1 TCCATACATGGTGAACATCTCATTTAATTCATGT-TTTGCTGCACATTAAAT
81860 CAGCAAGCAG
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
55 21 0.47
56 24 0.53
ACGTcount: A:0.25, C:0.21, G:0.13, T:0.40
Consensus pattern (56 bp):
TCCATACATGGTGAACATCTCATTTAATTCATGTTTTGCTGCACATTAAATGCCGT
Found at i:82497 original size:20 final size:20
Alignment explanation
Indices: 82466--82534 Score: 86
Period size: 20 Copynumber: 3.5 Consensus size: 20
82456 AGCTAATAAC
* *
82466 GAGCTC-AATGAGTTAAATT
1 GAGCTCGAATGAGCTAACTT
* *
82485 GAGCTTGAATGAGCTGACTT
1 GAGCTCGAATGAGCTAACTT
*
82505 GAGCACGAATGAGCTAACTT
1 GAGCTCGAATGAGCTAACTT
82525 GAGCTCGAAT
1 GAGCTCGAAT
82535 AAGTTGAACC
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
19 5 0.12
20 36 0.88
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (20 bp):
GAGCTCGAATGAGCTAACTT
Found at i:84664 original size:20 final size:20
Alignment explanation
Indices: 84618--84664 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
84608 AGCTCGTTTC
*
84618 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
84638 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
84658 CAGCTCA
1 CAGCTCA
84665 ATCTTAACCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:86187 original size:18 final size:19
Alignment explanation
Indices: 86165--86230 Score: 64
Period size: 18 Copynumber: 3.4 Consensus size: 19
86155 ATTGGAGTTA
86165 AAAAAAAATTCAAAAAAA-
1 AAAAAAAATTCAAAAAAAG
* *
86183 AAAAAAAGTGAGCAAAAAAAG
1 AAAAAAAAT--TCAAAAAAAG
*
86204 AAAAAAAAGT-AAAAAAAG
1 AAAAAAAATTCAAAAAAAG
86222 AACAAAAAA
1 AA-AAAAAA
86231 AAAGTGAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
18 18 0.46
19 6 0.15
20 8 0.21
21 7 0.18
ACGTcount: A:0.80, C:0.05, G:0.09, T:0.06
Consensus pattern (19 bp):
AAAAAAAATTCAAAAAAAG
Found at i:86201 original size:22 final size:21
Alignment explanation
Indices: 86176--86240 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 21
86166 AAAAAAATTC
*
86176 AAAAAAAAAAAAAAGTGAGCAA
1 AAAAAAAAAAAAAAGTGA-AAA
*
86198 AAAAAGAAAAAAAAGT-AAAA
1 AAAAAAAAAAAAAAGTGAAAA
86218 AAAGAACAAAAAAAAAGTGAAAA
1 AAA-AA-AAAAAAAAAGTGAAAA
86241 GTCTTGTGAG
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
20 5 0.14
21 3 0.08
22 25 0.68
23 4 0.11
ACGTcount: A:0.80, C:0.03, G:0.12, T:0.05
Consensus pattern (21 bp):
AAAAAAAAAAAAAAGTGAAAA
Found at i:86208 original size:9 final size:9
Alignment explanation
Indices: 86196--86230 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
86186 AAAAGTGAGC
86196 AAAAAAAGA
1 AAAAAAAGA
*
86205 AAAAAAAGT
1 AAAAAAAGA
86214 AAAAAAAGA
1 AAAAAAAGA
86223 ACAAAAAA
1 A-AAAAAA
86231 AAAGTGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 17 0.74
10 6 0.26
ACGTcount: A:0.86, C:0.03, G:0.09, T:0.03
Consensus pattern (9 bp):
AAAAAAAGA
Found at i:87336 original size:48 final size:47
Alignment explanation
Indices: 87257--87362 Score: 135
Period size: 48 Copynumber: 2.2 Consensus size: 47
87247 GAGTGTCATG
*
87257 GAAAAAGAAATTGAGATTGAAAAAGGATGTGA-AAAAGAGAAAGAAATC
1 GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAA-AGAAA-AAATC
* *
87305 GAAAAAGAAATTGAGATTGAACAAAAG-TGTGAGGAAAAAGAGAAAATT
1 GAAAAAGAAATTGAGATTGAA-AAAAGATGTGA-GAAAAAGAAAAAATC
87353 GAAAAAGAAA
1 GAAAAAGAAA
87363 GAAAAGACAA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.59, C:0.02, G:0.25, T:0.14
Consensus pattern (47 bp):
GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAAAGAAAAAATC
Found at i:89073 original size:20 final size:20
Alignment explanation
Indices: 89027--89073 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
89017 AGCTCGTTTC
*
89027 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
89047 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
89067 CAGCTCA
1 CAGCTCA
89074 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:95600 original size:14 final size:14
Alignment explanation
Indices: 95582--95611 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
95572 GAAAAAAAAA
95582 AAAAAAAAAATTTGC
1 AAAAAAAAAA-TTGC
95597 AAAAAAAAAATTGC
1 AAAAAAAAAATTGC
95611 A
1 A
95612 TACGGTCTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.70, C:0.07, G:0.07, T:0.17
Consensus pattern (14 bp):
AAAAAAAAAATTGC
Found at i:97887 original size:24 final size:25
Alignment explanation
Indices: 97860--97913 Score: 60
Period size: 23 Copynumber: 2.2 Consensus size: 25
97850 ATGAGTGATA
*
97860 AAAAAAGAGA-GAGTGATTCAAAA-G
1 AAAAAAGAAACGAGTGA-TCAAAATG
*
97884 -AAAAAGAAACGAGTGATGAAAATG
1 AAAAAAGAAACGAGTGATCAAAATG
97908 AAAAAA
1 AAAAAA
97914 AGAATTTGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 13 0.52
24 7 0.28
25 5 0.20
ACGTcount: A:0.63, C:0.04, G:0.22, T:0.11
Consensus pattern (25 bp):
AAAAAAGAAACGAGTGATCAAAATG
Found at i:103694 original size:12 final size:12
Alignment explanation
Indices: 103677--103720 Score: 63
Period size: 11 Copynumber: 3.7 Consensus size: 12
103667 GTAGTTTCTC
*
103677 AAAAAAAACTCG
1 AAAAAAAATTCG
103689 AAAAAAAAATTC-
1 -AAAAAAAATTCG
103701 AAAAAAAATTCG
1 AAAAAAAATTCG
103713 AAAAAAAA
1 AAAAAAAA
103721 ACTAGTTTCC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
11 11 0.38
12 8 0.28
13 10 0.34
ACGTcount: A:0.75, C:0.09, G:0.05, T:0.11
Consensus pattern (12 bp):
AAAAAAAATTCG
Found at i:103707 original size:24 final size:24
Alignment explanation
Indices: 103675--103721 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
103665 TAGTAGTTTC
103675 TCAAAAAAAACTCGAAAAAAAAAT
1 TCAAAAAAAACTCGAAAAAAAAAT
*
103699 TCAAAAAAAATTCGAAAAAAAAA
1 TCAAAAAAAACTCGAAAAAAAAA
103722 CTAGTTTCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.72, C:0.11, G:0.04, T:0.13
Consensus pattern (24 bp):
TCAAAAAAAACTCGAAAAAAAAAT
Found at i:106362 original size:17 final size:17
Alignment explanation
Indices: 106340--106382 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
106330 CAAAAAAATC
106340 AAAAAAATTTGATTGAA
1 AAAAAAATTTGATTGAA
106357 AAAAAAATTTGATTGAA
1 AAAAAAATTTGATTGAA
106374 AAAAAAATT
1 AAAAAAATT
106383 CAAAAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.28
Consensus pattern (17 bp):
AAAAAAATTTGATTGAA
Found at i:106426 original size:24 final size:25
Alignment explanation
Indices: 106383--106460 Score: 79
Period size: 25 Copynumber: 3.0 Consensus size: 25
106373 AAAAAAAATT
*
106383 CAAAAAAAAAGTGAAAAAAA-TCGAG
1 CAAAAAAAAAGTAAAAAAAAGT-GAG
106408 CAAAAAAAAAG-AAAAAAAAGGTGAG
1 CAAAAAAAAAGTAAAAAAAA-GTGAG
106433 CAAAAAAATCAAGTTTAAAAAAAAGTGA
1 CAAAAAAA--AAG--TAAAAAAAAGTGA
106461 AAAGTCTTGC
Statistics
Matches: 45, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
24 7 0.16
25 22 0.49
26 1 0.02
27 3 0.07
29 4 0.09
30 8 0.18
ACGTcount: A:0.68, C:0.06, G:0.15, T:0.10
Consensus pattern (25 bp):
CAAAAAAAAAGTAAAAAAAAGTGAG
Found at i:107495 original size:12 final size:12
Alignment explanation
Indices: 107469--107504 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
107459 AAAGAAATTG
107469 AAAGAAAAC-AA
1 AAAGAAAACGAA
107480 AAAGAAAACGAA
1 AAAGAAAACGAA
*
107492 AAAGAAAAAGAA
1 AAAGAAAACGAA
107504 A
1 A
107505 TTGCAAAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 9 0.39
12 14 0.61
ACGTcount: A:0.81, C:0.06, G:0.14, T:0.00
Consensus pattern (12 bp):
AAAGAAAACGAA
Found at i:107499 original size:18 final size:18
Alignment explanation
Indices: 107473--107573 Score: 64
Period size: 17 Copynumber: 5.6 Consensus size: 18
107463 AAATTGAAAG
*
107473 AAAACAAAAAGAAAACGA
1 AAAAGAAAAAGAAAACGA
** *
107491 AAAAGAAAAAGAAATTGC
1 AAAAGAAAAAGAAAACGA
*
107509 AAAAG-AAAAGAAATC-A
1 AAAAGAAAAAGAAAACGA
** *
107525 AAAAGTGAGAGAAAA-GA
1 AAAAGAAAAAGAAAACGA
* *
107542 AAATGAAGAAAAGAAAATTGA
1 AAAAG-A-AAAAGAAAA-CGA
107563 AAAAGAAAAAG
1 AAAAGAAAAAG
107574 CGAAAAAAGA
Statistics
Matches: 63, Mismatches: 14, Indels: 11
0.72 0.16 0.12
Matches are distributed among these distances:
16 5 0.08
17 20 0.32
18 19 0.30
19 12 0.19
20 1 0.02
21 6 0.10
ACGTcount: A:0.71, C:0.04, G:0.18, T:0.07
Consensus pattern (18 bp):
AAAAGAAAAAGAAAACGA
Found at i:107553 original size:14 final size:14
Alignment explanation
Indices: 107533--107571 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
107523 CAAAAAGTGA
107533 GAGAAAAGAAAA-T
1 GAGAAAAGAAAATT
107546 GAAGAAAAGAAAATT
1 G-AGAAAAGAAAATT
107561 GA-AAAAGAAAA
1 GAGAAAAGAAAA
107572 AGCGAAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 10 0.42
14 12 0.50
15 2 0.08
ACGTcount: A:0.72, C:0.00, G:0.21, T:0.08
Consensus pattern (14 bp):
GAGAAAAGAAAATT
Found at i:107625 original size:33 final size:33
Alignment explanation
Indices: 107588--107650 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
107578 AAAAGAAATT
107588 GAAAGAGAG-CT-TGAAAAGAAATCAAGTGAAAAA
1 GAAAGAGAGTCTGT-AAAAGAAA-CAAGTGAAAAA
*
107621 GAAAGAGAGTCTGTAAAAGAAACGAGTGAA
1 GAAAGAGAGTCTGTAAAAGAAACAAGTGAA
107651 GTGAGTAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.54, C:0.06, G:0.27, T:0.13
Consensus pattern (33 bp):
GAAAGAGAGTCTGTAAAAGAAACAAGTGAAAAA
Found at i:113246 original size:15 final size:13
Alignment explanation
Indices: 113226--113274 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 13
113216 ACTCTCCTCA
113226 TTCTTTTCTTTCTTT
1 TTCTTTTC--TCTTT
*
113241 TTCTTTTCACTCTT
1 TTCTTTTCTCT-TT
*
113255 TTGTTTTCTCTTT
1 TTCTTTTCTCTTT
113268 TTCTTTT
1 TTCTTTT
113275 TCTCGATCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 10 0.34
14 11 0.38
15 8 0.28
ACGTcount: A:0.02, C:0.20, G:0.02, T:0.76
Consensus pattern (13 bp):
TTCTTTTCTCTTT
Found at i:116768 original size:18 final size:19
Alignment explanation
Indices: 116745--116787 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
116735 ACAAAATAAT
*
116745 AAATTTGAT-TGAAAACAA
1 AAATTTGATGTGAAAAAAA
116763 AAATTTGATGTGAAAAAAA
1 AAATTTGATGTGAAAAAAA
116782 AAATTT
1 AAATTT
116788 CAAAATAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 9 0.39
19 14 0.61
ACGTcount: A:0.56, C:0.02, G:0.12, T:0.30
Consensus pattern (19 bp):
AAATTTGATGTGAAAAAAA
Found at i:117254 original size:21 final size:21
Alignment explanation
Indices: 117230--117269 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
117220 TGGTGAGGAA
117230 TTATT-TTTTTCTAAATATTAC
1 TTATTGTTTTTCT-AATATTAC
117251 TTATTGTTTTTCTAATATT
1 TTATTGTTTTTCTAATATT
117270 CAATTTGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.25, C:0.07, G:0.03, T:0.65
Consensus pattern (21 bp):
TTATTGTTTTTCTAATATTAC
Found at i:132457 original size:20 final size:20
Alignment explanation
Indices: 132434--132487 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
132424 AGTTTTTCCC
*
132434 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
132454 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
132474 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
132488 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:132469 original size:30 final size:30
Alignment explanation
Indices: 132434--132507 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
132424 AGTTTTTCCC
132434 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
132464 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
132494 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
132508 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:132497 original size:20 final size:20
Alignment explanation
Indices: 132434--132498 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
132424 AGTTTTTCCC
* * * *
132434 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
132454 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
132473 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
132494 AGCTC
1 AGCTC
132499 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:134122 original size:11 final size:11
Alignment explanation
Indices: 134073--134138 Score: 53
Period size: 11 Copynumber: 5.6 Consensus size: 11
134063 TTGGAGTAAC
134073 AAAAAA-TCAA
1 AAAAAATTCAA
134083 AAAAAATTCGAAA
1 AAAAAATTC--AA
*
134096 AAAAATTGATTGAA
1 AAAAA---ATTCAA
134110 AAAAAATTCAA
1 AAAAAATTCAA
* *
134121 AAAAAAGTGAA
1 AAAAAATTCAA
134132 AAAAAAT
1 AAAAAAT
134139 CGAGCAAAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
10 6 0.13
11 22 0.49
13 7 0.16
14 7 0.16
16 3 0.07
ACGTcount: A:0.71, C:0.05, G:0.08, T:0.17
Consensus pattern (11 bp):
AAAAAATTCAA
Found at i:134149 original size:37 final size:37
Alignment explanation
Indices: 134073--134151 Score: 99
Period size: 38 Copynumber: 2.1 Consensus size: 37
134063 TTGGAGTAAC
* *
134073 AAAAAATCAAAAAAAATTCGAAAAAAAATTGATTG-AAA
1 AAAAAATCAAAAAAAAGTCGAAAAAAAATCGA--GCAAA
*
134111 AAAAATTCAAAAAAAAGT-GAAAAAAAATCGAGCAAA
1 AAAAAATCAAAAAAAAGTCGAAAAAAAATCGAGCAAA
134147 AAAAA
1 AAAAA
134152 GAAAAAAAGA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
35 1 0.03
36 8 0.22
37 12 0.32
38 16 0.43
ACGTcount: A:0.71, C:0.06, G:0.09, T:0.14
Consensus pattern (37 bp):
AAAAAATCAAAAAAAAGTCGAAAAAAAATCGAGCAAA
Found at i:134164 original size:13 final size:12
Alignment explanation
Indices: 134144--134173 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
134134 AAAATCGAGC
134144 AAAAAAAAGAAA
1 AAAAAAAAGAAA
134156 AAAAGAAAAGAAA
1 AAAA-AAAAGAAA
134169 AAAAA
1 AAAAA
134174 GGGTGACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (12 bp):
AAAAAAAAGAAA
Done.