Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1400
Parameters: 2 7 7 80 10 50 1000
Length:  106021

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4423--4478
29
1.9
29
88
0
85
42
3
21
32
1.70
4689--4720
13
2.5
13
94
0
55
31
0
12
56
1.37
4815--5056
50
4.7
50
86
4
297
26
24
29
19
1.99
4815--5064
100
2.4
103
88
6
364
26
24
29
20
1.99
10965--10994
13
2.3
13
100
0
60
20
6
13
60
1.55
11875--12184
157
2.0
157
93
0
530
47
4
3
44
1.40
12074--12107
16
2.1
16
89
10
52
44
0
5
50
1.26
12314--12362
16
3.1
16
90
0
80
36
32
0
30
1.58
17110--17179
33
2.1
33
86
7
97
54
11
7
27
1.62
17283--17324
21
2.0
21
100
0
84
52
14
19
14
1.75
19256--19307
18
2.9
18
83
16
56
30
9
1
57
1.42
30191--30244
25
2.2
26
100
0
94
53
7
3
35
1.47
30594--30813
114
1.9
114
94
0
386
32
14
20
32
1.92
31475--31534
22
2.8
21
77
5
66
21
25
18
35
1.96
34427--34453
6
4.5
6
100
0
54
33
18
48
0
1.49
37950--37988
18
2.2
18
100
0
78
48
5
0
46
1.24
46231--46260
4
7.2
4
96
3
51
23
0
0
76
0.78
54106--54130
5
5.0
5
100
0
50
60
0
0
40
0.97
60861--60967
53
2.0
53
100
0
214
29
16
16
36
1.92
62425--62476
23
2.3
23
100
0
104
38
17
15
28
1.90
75436--75487
23
2.3
23
100
0
104
28
15
17
38
1.90
87999--88036
2
19.0
2
100
0
76
50
0
50
0
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90949--106021
7
2151.7
7
99
0
29138
14
0
43
42
1.46

Tables:   1

The End!