Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold860
Parameters: 2 7 7 80 10 50 1000
Length:  102834

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1529--1653
62
2.0
61
89
4
189
33
9
16
40
1.81
9931--9963
16
2.1
16
88
5
50
69
9
0
21
1.15
9930--9994
13
4.6
14
77
11
62
70
6
0
23
1.09
12888--12924
16
2.4
16
90
4
58
16
2
0
81
0.81
12890--12929
16
2.4
16
83
4
53
15
2
0
82
0.77
14737--14926
90
2.2
88
80
9
201
35
16
8
39
1.80
15368--15464
29
3.3
29
81
4
88
35
5
1
58
1.27
15394--15446
11
5.2
11
73
17
51
30
1
0
67
1.01
15385--15488
11
10.4
11
66
18
50
37
2
0
59
1.12
15385--15488
10
10.4
10
69
15
72
37
2
0
59
1.12
15385--15482
30
3.3
30
81
2
81
38
3
0
58
1.14
20531--20594
20
3.3
19
78
8
58
59
0
1
39
1.07
20542--20605
18
3.4
19
80
8
60
53
0
3
43
1.16
20531--20598
19
3.5
20
82
11
79
58
0
1
39
1.07
20886--20983
10
10.3
9
76
14
65
38
2
0
59
1.09
20925--20985
19
3.0
21
76
13
65
40
1
0
57
1.08
20859--20991
47
2.8
48
79
8
130
36
3
0
58
1.21
20895--20991
9
10.2
10
73
12
62
37
2
0
60
1.08
21059--21241
99
1.9
99
87
4
273
31
9
21
37
1.86
23662--23691
2
15.0
2
100
0
60
50
0
0
50
1.00
23687--23796
54
2.0
54
89
0
166
50
8
12
29
1.69
27904--28046
68
2.1
68
81
2
171
30
11
20
37
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28393--28425
2
16.0
2
93
6
57
48
3
0
48
1.17
28973--29451
233
2.0
236
92
3
793
44
10
13
31
1.77
29727--29766
14
2.9
14
92
0
62
42
5
0
52
1.23
34263--34385
61
2.0
61
82
3
149
42
12
5
39
1.66
35755--36047
72
4.1
71
89
2
426
31
20
20
26
1.98
43250--43313
20
3.3
19
78
8
58
59
0
1
39
1.07
43261--43324
18
3.4
19
80
8
60
53
0
3
43
1.16
43250--43317
19
3.5
20
82
11
79
58
0
1
39
1.07
43607--43704
10
10.3
9
76
14
65
38
2
0
59
1.09
43646--43706
19
3.0
21
76
13
65
40
1
0
57
1.08
43602--43712
46
2.4
48
81
7
129
39
2
0
57
1.13
43616--43712
9
10.2
10
73
12
62
37
2
0
60
1.08
43780--43962
99
1.9
99
87
4
273
31
9
21
37
1.86
46394--46503
54
2.0
54
89
0
166
50
8
12
29
1.69
50510--50715
87
2.4
86
79
6
209
33
18
7
39
1.79
50742--50841
20
5.0
20
69
9
60
63
3
4
30
1.28
50759--50879
10
12.4
10
68
11
63
64
2
4
28
1.25
53555--53635
36
2.3
34
80
18
94
40
2
4
51
1.37
53760--53805
19
2.5
18
82
3
56
36
0
4
58
1.18
53917--53971
21
2.6
21
91
8
94
27
40
9
23
1.85
54383--54441
29
2.0
29
83
6
75
42
11
18
27
1.85
60138--60329
93
2.1
93
83
5
241
31
11
22
33
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65787--65911
62
2.0
61
89
1
187
34
9
15
40
1.79
66010--66123
31
3.7
30
74
14
90
39
11
4
44
1.60
66003--66122
61
2.0
61
85
3
161
38
12
4
45
1.61
69492--69530
19
2.0
20
85
14
55
71
0
23
5
1.05
74096--74134
19
2.0
20
85
14
55
71
0
23
5
1.05
77738--77869
61
2.1
61
83
5
158
42
11
4
41
1.61
81031--81190
79
2.0
79
98
0
311
42
16
19
21
1.89
81755--81807
26
2.0
26
100
0
106
54
3
3
37
1.36
84052--84091
21
1.9
21
100
0
80
20
15
15
50
1.79
85790--85869
38
2.3
33
83
14
83
40
12
16
31
1.85
85811--85873
19
3.3
19
66
16
58
38
12
17
31
1.87
85800--85877
38
2.1
38
100
0
156
37
12
17
32
1.88
88179--88207
15
2.0
15
93
6
51
44
0
0
55
0.99
89057--89165
54
2.0
54
92
0
182
48
9
11
30
1.71
93357--93618
87
3.0
87
80
4
240
34
19
8
38
1.81
93423--93617
89
2.2
86
85
6
275
34
19
9
36
1.84
95390--95510
50
2.4
50
88
2
172
33
11
19
36
1.87
99161--99241
31
2.6
31
81
9
87
34
9
4
50
1.57
99121--99240
61
2.0
61
83
3
152
35
12
5
45
1.66
100956--100981
5
5.2
5
100
0
52
38
19
19
23
1.93
100930--100981
26
2.0
26
81
7
61
34
15
26
23
1.94
101859--101895
9
4.1
9
92
0
65
29
10
13
45
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102096--102227
30
4.4
29
79
13
117
46
3
14
34
1.62

Tables:   1

The End!