Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold339
Parameters: 2 7 7 80 10 50 1000
Length:  94545

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3540--3593
24
2.2
25
78
15
60
11
22
3
62
1.43
3516--3643
68
1.9
69
80
8
154
14
23
1
60
1.42
3577--3612
18
2.0
18
89
10
56
13
25
0
61
1.33
9379--9422
22
2.0
22
95
0
79
34
4
36
25
1.76
12999--13048
13
3.8
13
92
5
82
22
10
0
68
1.19
12999--13051
27
2.0
27
96
0
97
24
11
0
64
1.26
13089--13119
13
2.4
13
94
0
53
16
6
3
74
1.16
21205--21266
10
5.9
10
74
10
52
33
32
3
30
1.74
21205--21267
21
3.0
21
88
2
90
33
33
3
30
1.74
23456--23513
14
4.7
11
84
14
53
77
6
1
13
1.05
23468--23517
13
3.8
13
94
5
91
78
6
0
16
0.95
23555--23604
14
4.0
13
85
15
70
62
0
14
24
1.32
24338--24381
18
2.5
17
82
10
52
75
6
13
4
1.17
34843--34889
23
2.1
23
84
7
62
51
12
4
31
1.59
39013--39057
11
4.0
11
88
5
72
73
2
8
15
1.18
39016--39064
12
4.1
12
89
5
64
73
4
8
14
1.21
43482--43531
12
4.2
12
82
12
59
72
4
10
14
1.26
43480--43523
22
2.0
22
95
0
79
72
2
9
15
1.19
43444--43531
34
2.5
35
81
5
99
69
4
11
14
1.33
43485--43523
10
3.7
10
83
12
51
76
2
7
12
1.09
52275--52321
23
2.1
23
84
7
62
51
12
4
31
1.59
57253--57287
14
2.5
14
100
0
70
17
11
5
65
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57330--57375
11
4.0
11
89
10
74
10
0
8
80
0.91
57328--57373
12
3.8
12
88
11
76
10
0
6
82
0.83
57327--57376
24
2.1
24
100
0
100
16
0
8
76
1.02
62023--62071
17
3.3
15
76
17
50
18
6
4
71
1.23
64642--64671
11
2.7
11
100
0
60
80
6
0
13
0.91
70172--70218
20
2.3
20
85
0
67
29
36
12
21
1.91
71722--71797
9
7.0
10
75
23
57
78
1
14
5
0.98
71720--71803
24
3.8
24
73
13
81
78
1
14
5
0.99
77126--77185
23
2.6
23
97
0
111
51
8
6
33
1.58
77126--77200
23
3.3
23
88
3
73
49
10
5
34
1.60
78091--78142
27
1.9
27
84
0
68
65
1
25
7
1.30
78137--78189
23
2.4
22
76
20
56
69
1
16
11
1.26
81313--81342
8
3.8
8
100
0
60
80
0
0
20
0.72
81312--81359
16
2.9
16
84
3
60
77
2
4
16
1.03
83956--84008
23
2.4
22
76
20
56
9
18
1
69
1.25
88350--88412
33
1.9
33
84
12
85
12
25
6
55
1.60
88410--88465
21
2.7
21
72
5
51
8
17
1
71
1.21
88409--88465
14
4.1
14
75
16
57
8
17
1
71
1.19
88481--88547
18
3.6
18
80
6
80
8
14
2
73
1.20
88427--88534
6
17.7
6
69
11
60
7
16
2
73
1.18
89228--89272
20
2.2
20
88
0
63
26
28
15
28
1.96
91692--91728
18
2.1
18
90
5
58
40
0
10
48
1.38

Tables:   1

The End!