Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2141
Parameters: 2 7 7 80 10 50 1000
Length:  80184

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1502--1539
19
2.0
19
100
0
76
21
21
21
36
1.95
4965--5000
15
2.3
16
90
4
56
19
8
0
72
1.10
5787--5812
11
2.4
11
100
0
52
7
19
26
46
1.77
9172--9234
21
2.9
22
83
7
74
36
30
4
28
1.78
9728--9754
4
6.8
4
100
0
54
22
0
0
77
0.76
17181--17217
15
2.5
15
95
0
65
75
0
13
10
1.04
17180--17218
16
2.5
16
87
4
62
76
0
12
10
1.01
18892--18954
21
3.0
21
88
2
90
30
3
33
33
1.74
21033--21095
18
3.3
19
80
10
58
74
4
14
6
1.18
30547--30593
23
2.1
23
84
7
62
51
12
4
31
1.59
41836--41883
20
2.4
20
67
0
51
33
18
27
20
1.96
44904--44942
20
1.9
21
89
5
62
23
28
12
35
1.91
45332--45357
13
2.0
13
100
0
52
46
0
7
46
1.31
50618--50670
23
2.4
22
76
20
56
9
18
1
69
1.25
58986--59209
40
5.7
40
85
4
269
25
21
27
25
1.99
58986--59215
79
2.9
80
81
7
272
25
21
27
25
1.99
60983--61206
40
5.7
40
86
5
287
25
28
21
24
1.99
60983--61206
79
2.8
79
85
6
283
25
28
21
24
1.99
60985--61206
119
1.9
119
83
5
297
25
27
22
24
2.00
63232--63299
29
2.3
29
85
5
93
27
30
13
27
1.94
63401--63479
29
2.7
30
82
13
110
29
30
15
25
1.96
71441--71508
29
2.3
29
85
5
93
27
30
13
27
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71332--71660
177
1.9
172
90
4
525
31
24
13
30
1.94
71613--71691
29
2.7
30
82
13
110
29
30
15
25
1.96
73094--73118
11
2.3
11
100
0
50
28
40
8
24
1.83

Tables:   1

The End!