Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3082
Parameters: 2 7 7 80 10 50 1000
Length:  64311

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5709--5743
13
2.6
14
90
4
54
82
5
2
8
0.91
5778--5819
13
3.2
13
87
12
68
66
0
11
21
1.23
5786--5836
13
3.5
14
85
15
68
72
0
9
17
1.11
10408--10454
20
2.3
20
85
0
67
29
36
12
21
1.91
13941--14005
22
2.9
22
90
2
94
33
33
4
27
1.78
14309--14378
14
4.8
14
75
19
63
70
2
11
15
1.28
14335--14376
18
2.5
16
92
7
66
73
2
14
9
1.18
14309--14351
13
3.2
13
86
3
59
69
4
9
16
1.31
18895--18934
18
2.2
18
86
4
53
12
27
0
60
1.33
19986--20032
13
3.8
12
91
8
76
21
10
0
68
1.20
19986--20035
25
2.0
25
96
4
91
24
12
0
64
1.27
20073--20114
12
3.7
11
81
15
50
9
2
9
78
1.05
20071--20118
11
4.2
12
86
10
64
12
4
14
68
1.34
22404--22458
19
2.8
20
80
8
67
76
1
14
7
1.08
27047--27107
28
2.2
28
85
8
81
11
13
8
67
1.42
30645--30691
20
2.3
20
81
0
58
23
12
34
29
1.92
36376--36400
12
2.1
12
100
0
50
16
8
8
68
1.38
36381--36423
22
2.0
22
86
4
61
6
9
6
76
1.15
41073--41125
23
2.4
22
76
20
56
9
16
1
71
1.21
45941--46152
40
5.3
40
81
5
259
24
20
27
27
1.99
45945--46152
80
2.6
80
90
0
319
23
20
28
27
1.99
48304--48350
23
2.1
23
84
7
62
51
12
4
31
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50266--50330
22
2.9
22
83
2
76
33
30
4
30
1.78
51325--51389
22
2.9
22
90
2
94
33
33
4
27
1.78
52396--52449
22
2.5
22
93
0
90
31
33
5
29
1.80
55777--55841
20
3.3
19
73
16
51
38
16
21
23
1.93
57616--57678
33
1.9
33
84
12
85
12
25
6
55
1.60
57676--57799
21
5.7
21
70
12
56
6
16
2
74
1.14
57675--57799
27
4.6
27
71
21
82
6
16
2
74
1.13
57727--57778
10
5.2
9
78
15
50
1
15
1
80
0.88
57681--57778
15
6.6
14
76
18
83
4
17
2
76
1.04
57693--57787
6
15.7
6
72
20
58
4
16
2
76
1.03
58864--58928
12
5.5
11
75
18
51
15
7
4
72
1.24
58874--58928
11
4.5
12
72
18
51
16
5
5
72
1.22
64195--64248
20
2.7
20
88
0
72
25
18
16
38
1.92
64205--64265
30
2.0
30
87
6
88
22
19
18
39
1.92
64195--64259
20
3.2
20
75
16
53
24
20
15
40
1.91

Tables:   1

The End!