Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2643
Parameters: 2 7 7 80 10 50 1000
Length:  63841

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3167--3229
20
3.3
19
82
4
65
58
0
1
39
1.07
3167--3233
19
3.5
20
78
15
70
58
0
1
40
1.07
3167--3240
18
3.9
18
81
10
69
55
0
2
41
1.14
3487--3617
46
2.8
48
78
13
132
37
3
0
58
1.22
3522--3617
9
10.2
10
72
14
53
37
2
0
60
1.09
3513--3611
10
10.4
10
72
18
77
39
2
0
58
1.10
3567--3651
27
3.1
28
75
13
86
37
1
2
58
1.18
6275--6384
54
2.0
54
89
0
166
50
8
12
29
1.69
10355--10611
87
3.0
85
81
4
248
34
19
8
37
1.82
10419--10610
87
2.2
85
86
7
280
34
19
9
35
1.84
12381--12501
50
2.4
50
88
2
172
33
11
19
36
1.87
16154--16272
61
2.0
61
83
3
150
35
12
5
46
1.66
21105--21164
30
2.0
31
83
9
79
40
0
40
20
1.52
21378--21414
9
4.1
9
92
0
65
29
10
13
45
1.77
21602--21748
30
5.0
28
81
9
125
46
4
16
33
1.66
21617--21748
30
4.4
29
82
10
133
47
3
14
34
1.62
25794--25820
3
9.0
3
100
0
54
66
0
0
33
0.92
29099--29123
6
4.2
6
100
0
50
84
0
16
0
0.63
31097--31209
36
3.1
36
64
9
95
32
21
21
24
1.98
30750--31337
72
8.1
72
89
5
878
29
22
19
28
1.98
36141--36202
28
2.2
29
82
8
74
62
1
11
24
1.37
37607--37655
24
2.0
25
84
7
66
53
4
2
40
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40526--40595
29
2.4
29
78
7
79
44
11
20
24
1.84
44950--45177
89
2.6
86
81
4
224
34
20
7
38
1.80
45049--45211
88
1.9
87
89
6
258
35
19
9
34
1.85
45243--45291
20
2.4
21
83
6
66
61
0
2
36
1.08
45615--45757
55
2.6
55
82
6
166
37
1
1
60
1.14
45615--45704
19
4.8
19
74
17
66
35
2
0
62
1.08
45624--45719
9
10.2
10
73
18
73
33
2
0
64
1.05
45631--45719
10
9.4
10
72
17
57
33
2
0
64
1.06
45666--45746
28
2.9
27
73
20
69
39
1
1
58
1.14
47421--47482
28
2.2
29
82
8
74
62
1
11
24
1.37
49326--49450
62
2.0
61
89
4
189
33
9
16
40
1.81
58837--58869
16
2.1
16
88
5
50
69
9
0
21
1.15
58841--58892
13
3.6
14
82
15
54
67
7
0
25
1.17
61789--61824
15
2.4
15
90
0
54
16
2
0
80
0.83

Tables:   1

The End!