Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold3729
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55288
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.32
Found at i:2366 original size:17 final size:18
Alignment explanation
Indices: 2327--2368 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
2317 AAGAAGAAAA
2327 ACAAAA-AGATGAGTGAT
1 ACAAAAGAGATGAGTGAT
*
2344 AAAAAAGAGA-GAGTGAT
1 ACAAAAGAGATGAGTGAT
*
2361 TCAAAAGA
1 ACAAAAGA
2369 AAAAGAAACG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 18 0.86
18 3 0.14
ACGTcount: A:0.57, C:0.05, G:0.24, T:0.14
Consensus pattern (18 bp):
ACAAAAGAGATGAGTGAT
Found at i:7514 original size:30 final size:30
Alignment explanation
Indices: 7474--7546 Score: 114
Period size: 30 Copynumber: 2.5 Consensus size: 30
7464 CGAGTTTAAA
*
7474 CTAAA-ATGAGCTAAGTTTTAGCTCGTGAG
1 CTAAATATGAGCTAAGGTTTAGCTCGTGAG
7503 CTAAAGT-TGAGCTAAGGTTTAGCTCGTGAG
1 CTAAA-TATGAGCTAAGGTTTAGCTCGTGAG
7533 CTAAATATGAGCTA
1 CTAAATATGAGCTA
7547 GGAGTGAGCT
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
29 6 0.15
30 34 0.85
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.30
Consensus pattern (30 bp):
CTAAATATGAGCTAAGGTTTAGCTCGTGAG
Found at i:7557 original size:30 final size:30
Alignment explanation
Indices: 7493--7558 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
7483 GCTAAGTTTT
* *
7493 AGCTCGTGAGCTAAAGTTGAGCTAAGGTTT
1 AGCTCGTGAGCTAAAGTTGAGCTAAGGGTG
7523 AGCTCGTGAGCTAAA-TATGAGCT-AGGAGTG
1 AGCTCGTGAGCTAAAGT-TGAGCTAAGG-GTG
7553 AGCTCG
1 AGCTCG
7559 GTTTAGCTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 4 0.12
30 28 0.88
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (30 bp):
AGCTCGTGAGCTAAAGTTGAGCTAAGGGTG
Found at i:9822 original size:6 final size:6
Alignment explanation
Indices: 9806--9855 Score: 50
Period size: 6 Copynumber: 8.2 Consensus size: 6
9796 TTTCTTTTTA
*
9806 TTTCAT TTTCTT TTTCTT CTCTTGCTT TTTCTT TTTC-T TTTC-T TTTCTT
1 TTTCTT TTTCTT TTTCTT -T-TT-CTT TTTCTT TTTCTT TTTCTT TTTCTT
9855 T
1 T
9856 GTTTTCTCTT
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
5 10 0.26
6 20 0.51
7 3 0.08
8 3 0.08
9 3 0.08
ACGTcount: A:0.02, C:0.20, G:0.02, T:0.76
Consensus pattern (6 bp):
TTTCTT
Found at i:9838 original size:37 final size:37
Alignment explanation
Indices: 9795--9865 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
9785 CTTGCCTCTC
9795 TTTTCTTTTT-ATTTCATTTTCTTT-TTCTTCTCTTGCT
1 TTTTCTTTTTCATTTC-TTTTCTTTGTT-TTCTCTTGCT
*
9832 TTTTCTTTTTCTTTTCTTTTCTTTGTTTTCTCTT
1 TTTTCTTTTTCATTTCTTTTCTTTGTTTTCTCTT
9866 TACAAGAATG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
37 25 0.81
38 6 0.19
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.76
Consensus pattern (37 bp):
TTTTCTTTTTCATTTCTTTTCTTTGTTTTCTCTTGCT
Found at i:9866 original size:16 final size:16
Alignment explanation
Indices: 9791--9851 Score: 63
Period size: 16 Copynumber: 3.8 Consensus size: 16
9781 GCCTCTTGCC
*
9791 TCTCTTTTCTTTTTAT
1 TCTCTTTTCTTTTTCT
9807 T-TCATTTTCTTTTTCT
1 TCTC-TTTTCTTTTTCT
*
9823 TCTC-TTGCTTTTTCTT
1 TCTCTTTTCTTTTTC-T
*
9839 TTTCTTTTCTTTT
1 TCTCTTTTCTTTT
9852 CTTTGTTTTC
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
15 11 0.30
16 17 0.46
17 9 0.24
ACGTcount: A:0.03, C:0.20, G:0.02, T:0.75
Consensus pattern (16 bp):
TCTCTTTTCTTTTTCT
Found at i:12579 original size:30 final size:30
Alignment explanation
Indices: 12539--12611 Score: 114
Period size: 30 Copynumber: 2.5 Consensus size: 30
12529 CGAGTTTAAA
*
12539 CTAAA-ATGAGCTAAGTTTTAGCTCGTGAG
1 CTAAATATGAGCTAAGGTTTAGCTCGTGAG
12568 CTAAAGT-TGAGCTAAGGTTTAGCTCGTGAG
1 CTAAA-TATGAGCTAAGGTTTAGCTCGTGAG
12598 CTAAATATGAGCTA
1 CTAAATATGAGCTA
12612 GGAGTGAGCT
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
29 6 0.15
30 34 0.85
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.30
Consensus pattern (30 bp):
CTAAATATGAGCTAAGGTTTAGCTCGTGAG
Found at i:12622 original size:30 final size:30
Alignment explanation
Indices: 12558--12623 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
12548 GCTAAGTTTT
* *
12558 AGCTCGTGAGCTAAAGTTGAGCTAAGGTTT
1 AGCTCGTGAGCTAAAGTTGAGCTAAGGGTG
12588 AGCTCGTGAGCTAAA-TATGAGCT-AGGAGTG
1 AGCTCGTGAGCTAAAGT-TGAGCTAAGG-GTG
12618 AGCTCG
1 AGCTCG
12624 GTTTAGCTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 4 0.12
30 28 0.88
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (30 bp):
AGCTCGTGAGCTAAAGTTGAGCTAAGGGTG
Found at i:18322 original size:10 final size:10
Alignment explanation
Indices: 18307--18371 Score: 53
Period size: 10 Copynumber: 6.5 Consensus size: 10
18297 AGTTTTTCCC
18307 AGCTCAATTT
1 AGCTCAATTT
*
18317 AGCTCACA-TG
1 AGCTCA-ATTT
*
18327 AGCTTAATTT
1 AGCTCAATTT
*
18337 AGCTC-GTTT
1 AGCTCAATTT
18346 GAGCTCAATTT
1 -AGCTCAATTT
* *
18357 AGCTTACTTT
1 AGCTCAATTT
18367 AGCTC
1 AGCTC
18372 GTTTGAGCTT
Statistics
Matches: 42, Mismatches: 9, Indels: 8
0.71 0.15 0.14
Matches are distributed among these distances:
9 4 0.10
10 34 0.81
11 4 0.10
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (10 bp):
AGCTCAATTT
Found at i:18330 original size:20 final size:20
Alignment explanation
Indices: 18307--18360 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
18297 AGTTTTTCCC
18307 AGCTCAATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
18327 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
18347 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
18361 TACTTTAGCT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:18341 original size:30 final size:30
Alignment explanation
Indices: 18307--18380 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 30
18297 AGTTTTTCCC
18307 AGCTCAATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTC-ATTTGAGCTCA-ATTGAGCTTAATTT
* * *
18337 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCATTTGAGCTCAATTGAGCTTAATTT
*
18367 AGCTCGTTTGAGCT
1 AGCTCATTTGAGCT
18381 TGGCTTAAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
29 4 0.10
30 35 0.90
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (30 bp):
AGCTCATTTGAGCTCAATTGAGCTTAATTT
Found at i:18370 original size:20 final size:20
Alignment explanation
Indices: 18307--18371 Score: 62
Period size: 20 Copynumber: 3.2 Consensus size: 20
18297 AGTTTTTCCC
* * *
18307 AGCTCAATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
18327 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
18346 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
18367 AGCTC
1 AGCTC
18372 GTTTGAGCTT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 29 0.81
21 4 0.11
22 1 0.03
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:21292 original size:10 final size:10
Alignment explanation
Indices: 21279--21330 Score: 59
Period size: 10 Copynumber: 4.7 Consensus size: 10
21269 AAAAAATTCG
21279 AAAAAAAAGA
1 AAAAAAAAGA
21289 AAAAAATAAGTGA
1 AAAAAA-AA--GA
21302 GCAAAAAAAAGA
1 --AAAAAAAAGA
21314 AAAAAAAAGA
1 AAAAAAAAGA
21324 AAAAAAA
1 AAAAAAA
21331 GAAGTGAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
10 23 0.62
11 2 0.05
12 2 0.05
13 2 0.05
14 2 0.05
15 6 0.16
ACGTcount: A:0.83, C:0.02, G:0.12, T:0.04
Consensus pattern (10 bp):
AAAAAAAAGA
Found at i:21318 original size:9 final size:9
Alignment explanation
Indices: 21304--21333 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
21294 ATAAGTGAGC
21304 AAAAAAAAG
1 AAAAAAAAG
21313 AAAAAAAAAG
1 -AAAAAAAAG
21323 AAAAAAAAG
1 AAAAAAAAG
21332 AA
1 AA
21334 GTGAAAAGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:22403 original size:15 final size:15
Alignment explanation
Indices: 22378--22424 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
22368 AGAAAAGAAT
22378 AAAGAAAATGAAAATG
1 AAAG-AAATGAAAATG
*
22394 AAAGAAATGAAAAAG
1 AAAGAAATGAAAATG
22409 AAA-AATATGAAAATG
1 AAAGAA-ATGAAAATG
22424 A
1 A
22425 GATTTCAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
14 2 0.07
15 22 0.79
16 4 0.14
ACGTcount: A:0.70, C:0.00, G:0.17, T:0.13
Consensus pattern (15 bp):
AAAGAAATGAAAATG
Found at i:22471 original size:12 final size:12
Alignment explanation
Indices: 22454--22529 Score: 50
Period size: 12 Copynumber: 6.3 Consensus size: 12
22444 AGTGAAAAGC
22454 AAAAAGAGATTG
1 AAAAAGAGATTG
*
22466 AAAAAGAAATTG
1 AAAAAGAGATTG
*
22478 --AAAGAGA-AG
1 AAAAAGAGATTG
*
22487 AAAAAGAAAGAGTGG
1 AAAAAG--AGA-TTG
*
22502 AAAAAGAAATTG
1 AAAAAGAGATTG
* *
22514 AAAGAGAGCTTG
1 AAAAAGAGATTG
22526 AAAA
1 AAAA
22530 GAAATCGAGT
Statistics
Matches: 48, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
9 1 0.02
10 6 0.12
11 4 0.08
12 25 0.52
13 5 0.10
15 7 0.15
ACGTcount: A:0.62, C:0.01, G:0.25, T:0.12
Consensus pattern (12 bp):
AAAAAGAGATTG
Found at i:22495 original size:15 final size:15
Alignment explanation
Indices: 22477--22510 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
22467 AAAAGAAATT
22477 GAAAGAGAAGAAAAA
1 GAAAGAGAAGAAAAA
**
22492 GAAAGAGTGGAAAAA
1 GAAAGAGAAGAAAAA
22507 GAAA
1 GAAA
22511 TTGAAAGAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.29, T:0.03
Consensus pattern (15 bp):
GAAAGAGAAGAAAAA
Found at i:24423 original size:10 final size:10
Alignment explanation
Indices: 24399--24447 Score: 55
Period size: 10 Copynumber: 4.9 Consensus size: 10
24389 AGCTCGTTTC
*
24399 CAGCTCACTT
1 CAGCTCAATT
* *
24409 GAGCTCAAGT
1 CAGCTCAATT
24419 CAGCTC-ATT
1 CAGCTCAATT
24428 CAAGCTCAATT
1 C-AGCTCAATT
24439 CAGCTCAAT
1 CAGCTCAAT
24448 CTTAACCCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
9 3 0.09
10 25 0.78
11 4 0.12
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.27
Consensus pattern (10 bp):
CAGCTCAATT
Found at i:36239 original size:21 final size:23
Alignment explanation
Indices: 36194--36240 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
36184 TCACCTGCAA
* *
36194 TAAACACATTAAAATGAGTTTAT
1 TAAACACATTAAAATCAGCTTAT
36217 TAAACACATTAAAA-CA-CTTAT
1 TAAACACATTAAAATCAGCTTAT
36238 TAA
1 TAA
36241 TCATAACACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 1 0.05
23 14 0.64
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (23 bp):
TAAACACATTAAAATCAGCTTAT
Found at i:41595 original size:17 final size:17
Alignment explanation
Indices: 41573--41615 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
41563 TAGCTTCTTC
41573 TTTTTTTCACGAAAATT
1 TTTTTTTCACGAAAATT
41590 TTTTTTTCACGAAAATT
1 TTTTTTTCACGAAAATT
41607 TTTTTTTCA
1 TTTTTTTCA
41616 ACTTGATATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.26, C:0.12, G:0.05, T:0.58
Consensus pattern (17 bp):
TTTTTTTCACGAAAATT
Found at i:41672 original size:11 final size:11
Alignment explanation
Indices: 41656--41698 Score: 70
Period size: 11 Copynumber: 4.0 Consensus size: 11
41646 GAAACCAATT
41656 TTTTTTTTGAA
1 TTTTTTTTGAA
41667 TTTTTTTTG-A
1 TTTTTTTTGAA
41677 TTTTTTTTGAA
1 TTTTTTTTGAA
*
41688 ATTTTTTTGAA
1 TTTTTTTTGAA
41699 GAAACTACTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
10 10 0.33
11 20 0.67
ACGTcount: A:0.19, C:0.00, G:0.09, T:0.72
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:41682 original size:21 final size:21
Alignment explanation
Indices: 41656--41697 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
41646 GAAACCAATT
*
41656 TTTTTTTTGAATTTTTTTTGA
1 TTTTTTTTGAAATTTTTTTGA
41677 TTTTTTTTGAAATTTTTTTGA
1 TTTTTTTTGAAATTTTTTTGA
41698 AGAAACTACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.17, C:0.00, G:0.10, T:0.74
Consensus pattern (21 bp):
TTTTTTTTGAAATTTTTTTGA
Found at i:42704 original size:21 final size:23
Alignment explanation
Indices: 42659--42705 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
42649 TCACCTGCAA
* *
42659 TAAACACATTAAAATGAGTTTAT
1 TAAACACATTAAAATCAGCTTAT
42682 TAAACACATTAAAA-CA-CTTAT
1 TAAACACATTAAAATCAGCTTAT
42703 TAA
1 TAA
42706 TCATAACACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 1 0.05
23 14 0.64
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (23 bp):
TAAACACATTAAAATCAGCTTAT
Found at i:46981 original size:14 final size:15
Alignment explanation
Indices: 46962--47002 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
46952 GTTGTAAAAT
46962 TTTATTTTTATTTA-
1 TTTATTTTTATTTAG
*
46976 TTTATTTTTACTTAG
1 TTTATTTTTATTTAG
46991 TTTAATTTTTAT
1 TTT-ATTTTTAT
47003 GTAAATATTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 13 0.57
15 3 0.13
16 7 0.30
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (15 bp):
TTTATTTTTATTTAG
Found at i:50210 original size:11 final size:11
Alignment explanation
Indices: 50194--50238 Score: 81
Period size: 11 Copynumber: 4.0 Consensus size: 11
50184 TAGTAGTTTC
50194 TTCAAAAAAAA
1 TTCAAAAAAAA
50205 TTCAAAAAAAA
1 TTCAAAAAAAA
50216 TTCAAAAAAAAA
1 TTC-AAAAAAAA
50228 TTCAAAAAAAA
1 TTCAAAAAAAA
50239 AATTTGGTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
11 22 0.67
12 11 0.33
ACGTcount: A:0.73, C:0.09, G:0.00, T:0.18
Consensus pattern (11 bp):
TTCAAAAAAAA
Found at i:50214 original size:12 final size:12
Alignment explanation
Indices: 50197--50239 Score: 79
Period size: 12 Copynumber: 3.7 Consensus size: 12
50187 TAGTTTCTTC
50197 AAAAAAAATTC-
1 AAAAAAAATTCA
50208 AAAAAAAATTCA
1 AAAAAAAATTCA
50220 AAAAAAAATTCA
1 AAAAAAAATTCA
50232 AAAAAAAA
1 AAAAAAAA
50240 ATTTGGTTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
11 11 0.35
12 20 0.65
ACGTcount: A:0.79, C:0.07, G:0.00, T:0.14
Consensus pattern (12 bp):
AAAAAAAATTCA
Found at i:50300 original size:15 final size:15
Alignment explanation
Indices: 50280--50335 Score: 94
Period size: 15 Copynumber: 3.6 Consensus size: 15
50270 GATATCAAGT
50280 TGAAAAAAAAATTCG
1 TGAAAAAAAAATTCG
50295 TGAAAAAAAAATTCG
1 TGAAAAAAAAATTCG
50310 TGAAAAAAAAAATTTCG
1 TG-AAAAAAAAA-TTCG
50327 TGAAAAAAA
1 TGAAAAAAA
50336 GAAGAAGCTA
Statistics
Matches: 39, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
15 17 0.44
16 16 0.41
17 6 0.15
ACGTcount: A:0.62, C:0.05, G:0.12, T:0.20
Consensus pattern (15 bp):
TGAAAAAAAAATTCG
Found at i:50304 original size:17 final size:17
Alignment explanation
Indices: 50282--50335 Score: 85
Period size: 17 Copynumber: 3.3 Consensus size: 17
50272 TATCAAGTTG
50282 AAAAAAAAATTCGTG--
1 AAAAAAAAATTCGTGAA
50297 AAAAAAAAATTCGTGAA
1 AAAAAAAAATTCGTGAA
*
50314 AAAAAAAATTTCGTGAA
1 AAAAAAAAATTCGTGAA
50331 AAAAA
1 AAAAA
50336 GAAGAAGCTA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
15 15 0.42
17 21 0.58
ACGTcount: A:0.65, C:0.06, G:0.11, T:0.19
Consensus pattern (17 bp):
AAAAAAAAATTCGTGAA
Done.