genome.fa.s840.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1291
Parameters: 2 7 7 80 10 50 1000
Length:  54645

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9041--10386	72	18.7	72	93	2	2152	31	16	18	33	1.94
9041--10656	145	11.3	144	90	5	2455	31	16	18	33	1.93
10390--10656	72	3.7	72	93	3	448	30	16	18	34	1.93
10613--10767	55	2.8	54	89	5	240	29	16	19	35	1.93
11009--11041	14	2.3	15	89	5	50	72	3	0	24	0.98
11040--11141	30	3.4	31	83	5	122	29	22	3	44	1.71
11658--11701	15	3.0	14	83	6	52	75	11	13	0	1.06
11681--11736	24	2.3	25	90	6	96	66	8	23	1	1.30
12321--12368	17	2.8	17	76	23	55	31	16	10	41	1.82
12417--12471	17	3.2	16	80	19	67	29	14	10	45	1.79
12470--12506	19	1.9	20	94	5	67	43	13	10	32	1.79
12501--12532	8	3.9	8	92	8	55	87	0	0	12	0.54
12500--12534	9	4.0	9	85	7	54	85	0	0	14	0.59
12597--13028	17	25.0	18	70	15	209	29	13	11	44	1.80
12597--12993	55	7.6	53	68	14	177	29	13	11	44	1.80
12610--12751	73	1.9	73	81	8	173	30	14	11	42	1.81
12991--13029	18	2.2	18	90	0	60	38	12	7	41	1.72
14966--16879	597	3.2	596	93	1	3226	33	16	16	32	1.92
22447--22483	15	2.6	14	88	12	58	35	5	0	59	1.20
22449--22481	15	2.2	15	100	0	66	39	6	0	54	1.25
23202--23257	27	2.1	27	100	0	112	46	7	7	39	1.59
24768--24800	12	2.6	13	85	9	50	36	18	3	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27558--27611	28	1.9	28	85	7	74	51	9	5	33	1.57
28477--28550	28	2.6	28	95	4	132	22	20	29	27	1.98
28472--28560	28	3.2	28	88	1	126	26	20	26	25	1.99
28905--29288	27	14.3	27	78	7	275	19	17	19	43	1.88
28905--29288	54	7.1	53	81	5	346	19	17	19	43	1.88
28921--29288	81	4.6	81	79	5	352	19	16	19	43	1.88
28904--29288	108	3.6	106	83	4	416	20	17	19	43	1.88
33855--33911	28	2.0	28	100	0	114	50	14	7	28	1.68
36128--36175	4	12.0	4	90	0	69	25	6	0	68	1.12
40726--40756	15	2.1	15	93	0	53	32	3	32	32	1.74
45239--45303	30	2.2	29	81	8	76	30	27	6	35	1.81
45246--45303	30	1.9	30	85	0	80	31	24	6	37	1.82
52141--52190	26	1.9	26	95	0	91	30	32	24	14	1.94
52243--52292	26	1.9	26	95	0	91	30	34	24	12	1.91
52108--52370	102	2.6	103	90	3	413	30	30	20	19	1.97

Tables:   1

The End!