genome.fa.s847.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold686
Parameters: 2 7 7 80 10 50 1000
Length:  50021

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3085--3250	42	4.0	42	83	8	205	17	33	30	18	1.94
3085--3250	82	2.0	84	83	8	214	17	33	30	18	1.94
3698--3872	42	4.2	42	78	7	178	17	31	32	18	1.94
9034--10017	82	11.9	84	78	10	849	21	35	26	15	1.94
9034--10018	42	23.8	42	77	9	863	21	35	26	15	1.94
9034--10015	207	4.7	210	80	10	928	21	35	26	15	1.94
10117--10189	23	3.1	23	84	3	101	19	28	39	12	1.88
11980--12031	25	2.1	25	100	0	104	32	11	25	30	1.91
16088--16249	42	3.8	42	88	1	225	18	32	32	16	1.93
16723--16887	42	3.9	42	82	7	190	19	28	32	19	1.96
16719--16887	85	2.0	85	83	4	216	18	28	33	18	1.96
22301--22378	24	3.3	24	83	7	88	12	41	28	17	1.87
22477--23272	42	18.7	42	82	4	853	15	27	36	21	1.93
22473--23272	85	9.4	84	82	3	888	15	27	36	21	1.93
22476--23272	212	3.7	211	82	4	940	15	27	36	21	1.93
28426--28603	27	6.6	27	80	6	171	29	26	15	28	1.96
28447--28601	82	1.9	81	85	4	213	29	26	16	28	1.97
36120--36297	27	6.6	27	80	6	171	29	26	15	28	1.96
36141--36295	82	1.9	81	85	4	213	29	26	16	28	1.97
41049--41150	42	2.4	42	88	3	143	20	35	29	14	1.93
41454--41513	23	2.6	23	100	0	120	10	28	31	30	1.89
41618--42368	42	17.7	41	83	5	828	14	28	35	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41618--42368	169	4.4	168	83	4	929	14	28	35	20	1.92
41617--42368	211	3.6	212	85	3	1018	14	28	36	20	1.92
48316--48418	42	2.4	43	86	1	136	18	33	30	17	1.94
48309--48444	42	3.2	43	82	3	123	16	31	32	19	1.94
48890--49054	42	3.9	42	84	7	208	17	29	34	18	1.94
48890--49047	85	1.8	86	85	4	221	16	28	35	19	1.94
49264--49337	24	3.1	24	82	3	96	9	40	31	18	1.83
49274--49337	23	2.7	23	85	2	83	9	40	31	18	1.83
49436--49946	42	12.2	42	79	7	522	14	28	36	20	1.92
49436--49946	127	4.1	127	78	9	507	14	28	36	20	1.92
49439--49916	209	2.3	208	83	5	592	14	28	36	20	1.92

Tables:   1

The End!