Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1066
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 45831
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.31
Found at i:3840 original size:20 final size:20
Alignment explanation
Indices: 3794--3840 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
3784 AGCTTGTTTC
*
3794 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* * *
3814 CAACTCATTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
3834 CAGCTCA
1 CAGCTCA
3841 ATCTTAACCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.34, G:0.13, T:0.23
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:13582 original size:20 final size:20
Alignment explanation
Indices: 13559--13613 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
13549 AGTTTTTCCC
*
13559 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
13579 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
13599 AGCTCAATTTAGCTC
1 AGCTCAATTTAGCTC
13614 GTTTGAGCTT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:13614 original size:20 final size:20
Alignment explanation
Indices: 13577--13622 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
13567 TTAGCTCACA
*
13577 TGAGCTTAATTTAGCTCGTT
1 TGAGCTCAATTTAGCTCGTT
13597 TGAGCTCAATTTAGCTCGTT
1 TGAGCTCAATTTAGCTCGTT
13617 TGAGCT
1 TGAGCT
13623 TGGCTCAAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.20, C:0.17, G:0.22, T:0.41
Consensus pattern (20 bp):
TGAGCTCAATTTAGCTCGTT
Found at i:16511 original size:17 final size:17
Alignment explanation
Indices: 16489--16547 Score: 95
Period size: 17 Copynumber: 3.6 Consensus size: 17
16479 TAGCTTCTTC
16489 TTTTTTTTCACGAAAAT
1 TTTTTTTTCACGAAAAT
16506 TTTTTTTTCACG--AAT
1 TTTTTTTTCACGAAAAT
*
16521 TTTTTTTTCACGAAATT
1 TTTTTTTTCACGAAAAT
16538 TTTTTTTTCA
1 TTTTTTTTCA
16548 ACTTGATATC
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
15 15 0.38
17 24 0.62
ACGTcount: A:0.22, C:0.12, G:0.05, T:0.61
Consensus pattern (17 bp):
TTTTTTTTCACGAAAAT
Found at i:16543 original size:15 final size:15
Alignment explanation
Indices: 16489--16543 Score: 83
Period size: 15 Copynumber: 3.5 Consensus size: 15
16479 TAGCTTCTTC
16489 TTTTTTTTCACGAAAA
1 TTTTTTTTCACG-AAA
*
16505 TTTTTTTTTCACGAAT
1 -TTTTTTTTCACGAAA
16521 TTTTTTTTCACGAAA
1 TTTTTTTTCACGAAA
16536 TTTTTTTT
1 TTTTTTTT
16544 TTCAACTTGA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
15 22 0.61
16 2 0.06
17 12 0.33
ACGTcount: A:0.22, C:0.11, G:0.05, T:0.62
Consensus pattern (15 bp):
TTTTTTTTCACGAAA
Found at i:16602 original size:12 final size:12
Alignment explanation
Indices: 16585--16633 Score: 82
Period size: 12 Copynumber: 4.2 Consensus size: 12
16575 ATGGAAACCA
16585 AATTTTTTTTTG
1 AATTTTTTTTTG
16597 AATTTTTTTTTG
1 AATTTTTTTTTG
16609 -ATTTTTTTTTG
1 AATTTTTTTTTG
*
16620 AAATTTTTTTTG
1 AATTTTTTTTTG
16632 AA
1 AA
16634 GAAACTACTA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
11 11 0.31
12 24 0.69
ACGTcount: A:0.20, C:0.00, G:0.08, T:0.71
Consensus pattern (12 bp):
AATTTTTTTTTG
Found at i:16612 original size:23 final size:23
Alignment explanation
Indices: 16586--16632 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
16576 TGGAAACCAA
*
16586 ATTTTTTTTTGAATTTTTTTTTG
1 ATTTTTTTTTGAAATTTTTTTTG
16609 ATTTTTTTTTGAAATTTTTTTTG
1 ATTTTTTTTTGAAATTTTTTTTG
16632 A
1 A
16633 AGAAACTACT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.09, T:0.74
Consensus pattern (23 bp):
ATTTTTTTTTGAAATTTTTTTTG
Found at i:19632 original size:56 final size:54
Alignment explanation
Indices: 19510--19633 Score: 142
Period size: 56 Copynumber: 2.3 Consensus size: 54
19500 CCCCCTTGCA
* *
19510 TGCTTTCATTAAA-GCCGCCCATGCATGGGAACATCTCATTTAATTCATGTCTT
1 TGCTTTCATTAAATGCCGCCCATGCATGGGAACATCTCATTAAATGCATGTCTT
** * * * *
19563 TGCTCCCCTTTAAATGCCGTTCCATGCATGGGAACATCTCCTTAAATGGATGTCTT
1 TGCT-TTCATTAAATGCCG-CCCATGCATGGGAACATCTCATTAAATGCATGTCTT
19619 TGCTGTTCATTAAAT
1 TGCT-TTCATTAAAT
19634 TCGGCCAAAT
Statistics
Matches: 56, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
53 4 0.07
54 6 0.11
55 4 0.07
56 42 0.75
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.36
Consensus pattern (54 bp):
TGCTTTCATTAAATGCCGCCCATGCATGGGAACATCTCATTAAATGCATGTCTT
Found at i:22146 original size:21 final size:21
Alignment explanation
Indices: 22120--22189 Score: 77
Period size: 21 Copynumber: 3.3 Consensus size: 21
22110 TGTTCAAGCT
*
22120 CTCTTTCAATTTCTTTTTCCA
1 CTCTTTCAATTTCTTTTTCAA
** **
22141 CTCTTTCTTTTTCTTTTTCTT
1 CTCTTTCAATTTCTTTTTCAA
*
22162 CTTTTTCAATTTCTTTTTCAA
1 CTCTTTCAATTTCTTTTTCAA
22183 TCTCTTT
1 -CTCTTT
22190 TTGCTTTTCA
Statistics
Matches: 38, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
21 33 0.87
22 5 0.13
ACGTcount: A:0.10, C:0.24, G:0.00, T:0.66
Consensus pattern (21 bp):
CTCTTTCAATTTCTTTTTCAA
Found at i:22207 original size:42 final size:42
Alignment explanation
Indices: 22118--22208 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 42
22108 TCTGTTCAAG
* * *
22118 CTCTCTTTCAATTTCTTTTTCCACTCTTTCTTTTTCTTTTTCT
1 CTCTTTTTCAATTTCTTTTTCCAATC-TTCTTTTTCTTTTACT
22161 -TCTTTTTCAATTTCTTTTT-CAATC-TCTTTTTGCTTTTCACT
1 CTCTTTTTCAATTTCTTTTTCCAATCTTCTTTTT-CTTTT-ACT
22202 CTCTTTT
1 CTCTTTT
22209 GTTTTTGAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
39 7 0.17
40 5 0.12
41 6 0.14
42 24 0.57
ACGTcount: A:0.09, C:0.25, G:0.01, T:0.65
Consensus pattern (42 bp):
CTCTTTTTCAATTTCTTTTTCCAATCTTCTTTTTCTTTTACT
Found at i:22250 original size:15 final size:14
Alignment explanation
Indices: 22230--22277 Score: 60
Period size: 15 Copynumber: 3.3 Consensus size: 14
22220 CTCATTTTCA
22230 TCTTTTTCTTTTATT
1 TCTTTTTCTTTT-TT
*
22245 TCTTTTTCTTTTTC
1 TCTTTTTCTTTTTT
*
22259 TCTCATTTCTTTTTT
1 TCT-TTTTCTTTTTT
22274 TCTT
1 TCTT
22278 CCCTCAATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
14 4 0.14
15 24 0.86
ACGTcount: A:0.04, C:0.19, G:0.00, T:0.77
Consensus pattern (14 bp):
TCTTTTTCTTTTTT
Found at i:22254 original size:21 final size:21
Alignment explanation
Indices: 22230--22272 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
22220 CTCATTTTCA
* *
22230 TCTTTTTCTTTTATTTCTTTT
1 TCTTTTTCTCTCATTTCTTTT
22251 TCTTTTTCTCTCATTTCTTTT
1 TCTTTTTCTCTCATTTCTTTT
22272 T
1 T
22273 TTCTTCCCTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.77
Consensus pattern (21 bp):
TCTTTTTCTCTCATTTCTTTT
Found at i:22283 original size:20 final size:22
Alignment explanation
Indices: 22242--22288 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
22232 TTTTTCTTTT
* *
22242 ATTTCTTTTTCTTTTTCTCTC-
1 ATTTCTTTTTCTTCTTCCCTCA
22263 ATTTCTTTTT-TTCTTCCCTCA
1 ATTTCTTTTTCTTCTTCCCTCA
22284 ATTTC
1 ATTTC
22289 ATTCAAGATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 8 0.35
21 15 0.65
ACGTcount: A:0.09, C:0.26, G:0.00, T:0.66
Consensus pattern (22 bp):
ATTTCTTTTTCTTCTTCCCTCA
Found at i:23181 original size:12 final size:12
Alignment explanation
Indices: 23164--23215 Score: 83
Period size: 11 Copynumber: 4.6 Consensus size: 12
23154 GAATACAAAC
23164 TTTTTTTT-GAA
1 TTTTTTTTCGAA
23175 TTTTTTTTCGAA
1 TTTTTTTTCGAA
23187 TTTTTTTTC-AA
1 TTTTTTTTCGAA
23198 TTTTTTTTCG-A
1 TTTTTTTTCGAA
23209 TTTTTTT
1 TTTTTTT
23216 ACAATACCGT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
11 27 0.69
12 12 0.31
ACGTcount: A:0.13, C:0.06, G:0.06, T:0.75
Consensus pattern (12 bp):
TTTTTTTTCGAA
Found at i:23190 original size:23 final size:22
Alignment explanation
Indices: 23164--23220 Score: 87
Period size: 23 Copynumber: 2.5 Consensus size: 22
23154 GAATACAAAC
*
23164 TTTTTTTTGAATTTTTTTTCGAA
1 TTTTTTTTCAATTTTTTTTCG-A
23187 TTTTTTTTCAATTTTTTTTCGA
1 TTTTTTTTCAATTTTTTTTCGA
*
23209 TTTTTTTACAAT
1 TTTTTTTTCAAT
23221 ACCGTAATGA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
22 12 0.38
23 20 0.62
ACGTcount: A:0.18, C:0.07, G:0.05, T:0.70
Consensus pattern (22 bp):
TTTTTTTTCAATTTTTTTTCGA
Found at i:25594 original size:56 final size:54
Alignment explanation
Indices: 25472--25595 Score: 151
Period size: 56 Copynumber: 2.3 Consensus size: 54
25462 CCCCCTTGCA
* *
25472 TGCTTTCATT-AATGCCGTCCATGCATGGGAACATCTCATTTAATTCATGTCTT
1 TGCTTTCATTAAATGCCGTCCATGCATGGGAACATCTCATTAAATGCATGTCTT
** * * *
25525 TGCTCCCCTTTAAATGCCGTTCCATGCATGGGAACATCTCCTTAAATGGATGTCTT
1 TGCT-TTCATTAAATGCCG-TCCATGCATGGGAACATCTCATTAAATGCATGTCTT
25581 TGCTGTTCATTAAAT
1 TGCT-TTCATTAAAT
25596 TCGGCCAAAT
Statistics
Matches: 57, Mismatches: 11, Indels: 3
0.80 0.15 0.04
Matches are distributed among these distances:
53 4 0.07
54 3 0.05
55 7 0.12
56 43 0.75
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (54 bp):
TGCTTTCATTAAATGCCGTCCATGCATGGGAACATCTCATTAAATGCATGTCTT
Found at i:26085 original size:14 final size:14
Alignment explanation
Indices: 26066--26098 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
26056 TTAAGAACAT
26066 AATTATTAGACCCA
1 AATTATTAGACCCA
26080 AATTATTAGACCCA
1 AATTATTAGACCCA
26094 AATTA
1 AATTA
26099 AATCATGTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.45, C:0.18, G:0.06, T:0.30
Consensus pattern (14 bp):
AATTATTAGACCCA
Found at i:26623 original size:31 final size:32
Alignment explanation
Indices: 26567--26633 Score: 77
Period size: 31 Copynumber: 2.1 Consensus size: 32
26557 CTATTTATAT
*
26567 AGGTTGGCCGAATGTGTGGGATCA-TTTAACA
1 AGGTTAGCCGAATGTGTGGGATCATTTTAACA
*
26598 AGGTTAGCCGAAT-T-TGGAGATTCATTTTAGCA
1 AGGTTAGCCGAATGTGTGG-GA-TCATTTTAACA
26630 AGGT
1 AGGT
26634 GCATGCATGT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
29 3 0.10
30 3 0.10
31 15 0.48
32 10 0.32
ACGTcount: A:0.27, C:0.12, G:0.30, T:0.31
Consensus pattern (32 bp):
AGGTTAGCCGAATGTGTGGGATCATTTTAACA
Found at i:27450 original size:22 final size:22
Alignment explanation
Indices: 27422--27465 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
27412 TTTTGAACCA
27422 TTACCATTTCATACCAAATCCC
1 TTACCATTTCATACCAAATCCC
* *
27444 TTACCATTTCGTACCAATTCCC
1 TTACCATTTCATACCAAATCCC
27466 AAATACCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.27, C:0.36, G:0.02, T:0.34
Consensus pattern (22 bp):
TTACCATTTCATACCAAATCCC
Found at i:30442 original size:17 final size:17
Alignment explanation
Indices: 30420--30453 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
30410 CATCTAAGGC
*
30420 CTTTGTGACTTGTATCA
1 CTTTGTGACTCGTATCA
30437 CTTTGTGACTCGTATCA
1 CTTTGTGACTCGTATCA
30454 GAGGTAGGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.21, G:0.18, T:0.44
Consensus pattern (17 bp):
CTTTGTGACTCGTATCA
Found at i:32375 original size:24 final size:25
Alignment explanation
Indices: 32348--32416 Score: 63
Period size: 23 Copynumber: 2.8 Consensus size: 25
32338 AGAAAAGGAG
32348 AAAGAGATTGAAAAAAAAATCAA-A
1 AAAGAGATTGAAAAAAAAATCAAGA
* *
32372 AAAGTGA--GAGAAAAAAAATGAAGA
1 AAAGAGATTGA-AAAAAAAATCAAGA
* *
32396 AAAGAAAATTGAAAAAGAAAT
1 AAAG-AGATTGAAAAAAAAAT
32417 TGAGAATGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
22 2 0.06
23 11 0.31
24 11 0.31
25 1 0.03
26 8 0.23
27 2 0.06
ACGTcount: A:0.70, C:0.01, G:0.17, T:0.12
Consensus pattern (25 bp):
AAAGAGATTGAAAAAAAAATCAAGA
Found at i:32499 original size:33 final size:33
Alignment explanation
Indices: 32462--32524 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
32452 AAAAGAAATT
32462 GAAAGAGAG-CT-TGAAAAGAAATCAAGTGAAAAA
1 GAAAGAGAGTCTGT-AAAAGAAA-CAAGTGAAAAA
*
32495 GAAAGAGAGTCTGTAAAAGAAACGAGTGAA
1 GAAAGAGAGTCTGTAAAAGAAACAAGTGAA
32525 GTGAGTAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.54, C:0.06, G:0.27, T:0.13
Consensus pattern (33 bp):
GAAAGAGAGTCTGTAAAAGAAACAAGTGAAAAA
Found at i:36819 original size:23 final size:22
Alignment explanation
Indices: 36767--36819 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
36757 TCCACGTCTT
36767 TTTCTTTTATTTCTTTTTCTAA
1 TTTCTTTTATTTCTTTTTCTAA
*
36789 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTAT-TTCTTT-TTCTAA
36812 TTTCTTTT
1 TTTCTTTT
36820 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.11, C:0.19, G:0.00, T:0.70
Consensus pattern (22 bp):
TTTCTTTTATTTCTTTTTCTAA
Found at i:36864 original size:18 final size:17
Alignment explanation
Indices: 36763--36866 Score: 52
Period size: 18 Copynumber: 5.8 Consensus size: 17
36753 CCTTTCCACG
36763 TCTTTTTC-TTTT-ATT
1 TCTTTTTCTTTTTCATT
**
36778 TCTTTTTCTAATTCATT
1 TCTTTTTCTTTTTCATT
*
36795 T-TCTCTTCTTTCTTCAATT
1 TCT-TTTTCTTT-TTC-ATT
** * *
36814 TCTTTTTCACTCTCAATC
1 TCTTTTTCTTTTTC-ATT
36832 TCTTTTTGCTCTTTTTCATT
1 TC-TTTT--TCTTTTTCATT
36852 CTCTTTTTCTTTTTC
1 -TCTTTTTCTTTTTC
36867 CTCACTTGTT
Statistics
Matches: 65, Mismatches: 14, Indels: 17
0.68 0.15 0.18
Matches are distributed among these distances:
15 8 0.12
16 3 0.05
17 9 0.14
18 18 0.28
19 13 0.20
20 7 0.11
21 7 0.11
ACGTcount: A:0.10, C:0.23, G:0.01, T:0.66
Consensus pattern (17 bp):
TCTTTTTCTTTTTCATT
Found at i:39103 original size:22 final size:22
Alignment explanation
Indices: 39052--39117 Score: 80
Period size: 21 Copynumber: 3.0 Consensus size: 22
39042 GGTATTTGGG
* *
39052 AATTGGTTCGAAATAGTATGG-
1 AATTGGTACGAAATGGTATGGT
39073 AATTGGTACGAAATGGTATGGT
1 AATTGGTACGAAATGGTATGGT
* *
39095 ATTTGGTACGAATTGGTAATGGT
1 AATTGGTACGAAATGGT-ATGGT
39118 TCAAAGAGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
21 19 0.49
22 15 0.38
23 5 0.13
ACGTcount: A:0.30, C:0.05, G:0.30, T:0.35
Consensus pattern (22 bp):
AATTGGTACGAAATGGTATGGT
Found at i:43344 original size:20 final size:20
Alignment explanation
Indices: 43321--43372 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
43311 TTTTGAATTT
*
43321 TCTTTCTTTTTTCATTTT-TC
1 TCTTTCTTTTTT-ATTTTCGC
*
43341 TCTTTCTTTTGTATTTTCGC
1 TCTTTCTTTTTTATTTTCGC
43361 TCTTTTCTTTTT
1 TC-TTTCTTTTT
43373 CTCTCATTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 5 0.19
20 14 0.52
21 8 0.30
ACGTcount: A:0.04, C:0.19, G:0.04, T:0.73
Consensus pattern (20 bp):
TCTTTCTTTTTTATTTTCGC
Found at i:43357 original size:18 final size:18
Alignment explanation
Indices: 43303--43358 Score: 55
Period size: 20 Copynumber: 3.2 Consensus size: 18
43293 TCTCTTTTCA
*
43303 TTCTCTTT-TTTTG-AAT
1 TTCTCTTTCTTTTGTATT
*
43319 TT-TCTTTCTTTTTTCATTT
1 TTCTCTTTCTTTTGT-A-TT
43338 TTCTCTTTCTTTTGTATT
1 TTCTCTTTCTTTTGTATT
43356 TTC
1 TTC
43359 GCTCTTTTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 5 0.16
16 6 0.19
18 6 0.19
19 4 0.12
20 11 0.34
ACGTcount: A:0.07, C:0.16, G:0.04, T:0.73
Consensus pattern (18 bp):
TTCTCTTTCTTTTGTATT
Done.