Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2312_ERROPOS37353
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37353
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34
Found at i:1113 original size:45 final size:39
Alignment explanation
Indices: 1046--1162 Score: 144
Period size: 45 Copynumber: 2.8 Consensus size: 39
1036 CATATGACCT
* *
1046 CTTATCACTTGTCCTTGATCAGATAAGTGTAGCTAGGCTACCA
1 CTTATCACTT-TACTTGATCAGATAAGTGTAGCTAAGCT---A
1089 CTTATCACTTTACCACTTGATCAGATAAGTGTAGCTAAGCTA
1 CTTATCACTTT---ACTTGATCAGATAAGTGTAGCTAAGCTA
*
1131 CTTATCACTTTTCTTGATCAGATAAGTGTAGC
1 CTTATCACTTTACTTGATCAGATAAGTGTAGC
1163 CACTTATCAC
Statistics
Matches: 68, Mismatches: 3, Indels: 10
0.84 0.04 0.12
Matches are distributed among these distances:
39 20 0.29
42 13 0.19
43 10 0.15
45 25 0.37
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.35
Consensus pattern (39 bp):
CTTATCACTTTACTTGATCAGATAAGTGTAGCTAAGCTA
Found at i:1190 original size:37 final size:37
Alignment explanation
Indices: 1086--1270 Score: 229
Period size: 36 Copynumber: 5.0 Consensus size: 37
1076 AGCTAGGCTA
****
1086 CCACTTATCACTTTACCACTTGATCAGATAAGTGTAG
1 CCACTTATCACTTTGTTTCTTGATCAGATAAGTGTAG
1123 CTAAGCTACTTATCAC--T-TTTCTTGATCAGATAAGTGTAG
1 C----C-ACTTATCACTTTGTTTCTTGATCAGATAAGTGTAG
*
1162 CCACTTATCACTTTGTTTCTTGATCAGATAAGTGTAA
1 CCACTTATCACTTTGTTTCTTGATCAGATAAGTGTAG
*
1199 CCACTTATCAC-TTGTTTCTTGATCAGAT-AGTGTAA
1 CCACTTATCACTTTGTTTCTTGATCAGATAAGTGTAG
1234 CCACTTATCACTTTGTTTCTTGATCAGATAAG-GTAG
1 CCACTTATCACTTTGTTTCTTGATCAGATAAGTGTAG
1270 C
1 C
1271 TAAAACTACA
Statistics
Matches: 133, Mismatches: 5, Indels: 21
0.84 0.03 0.13
Matches are distributed among these distances:
34 9 0.07
35 19 0.14
36 39 0.29
37 35 0.26
39 20 0.15
40 1 0.01
41 1 0.01
42 9 0.07
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.38
Consensus pattern (37 bp):
CCACTTATCACTTTGTTTCTTGATCAGATAAGTGTAG
Found at i:1221 original size:36 final size:37
Alignment explanation
Indices: 1140--1310 Score: 229
Period size: 36 Copynumber: 4.5 Consensus size: 37
1130 ACTTATCACT
*
1140 TTTCTTGATCAGATAAGTGTAGCCACTTATCACTTTG
1 TTTCTTGATCAGATAAGTGTAACCACTTATCACTTTG
1177 TTTCTTGATCAGATAAGTGTAACCACTTATCAC-TTG
1 TTTCTTGATCAGATAAGTGTAACCACTTATCACTTTG
1213 TTTCTTGATCAGAT-AGTGTAACCACTTATCACTTTG
1 TTTCTTGATCAGATAAGTGTAACCACTTATCACTTTG
1249 TTTCTTGATCAGATAAGGTAGCTAAAACTACACTTATCACTTTG
1 TTTCTTGATCAGATAA-GT-G-T--AAC--CACTTATCACTTTG
** *
1293 TCACTTGATCAGACAAGT
1 TTTCTTGATCAGATAAGT
1311 ACTCAAATCC
Statistics
Matches: 121, Mismatches: 4, Indels: 12
0.88 0.03 0.09
Matches are distributed among these distances:
35 18 0.15
36 34 0.28
37 33 0.27
38 2 0.02
39 1 0.01
40 1 0.01
42 3 0.02
43 2 0.02
44 27 0.22
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (37 bp):
TTTCTTGATCAGATAAGTGTAACCACTTATCACTTTG
Found at i:1251 original size:72 final size:74
Alignment explanation
Indices: 1085--1310 Score: 253
Period size: 72 Copynumber: 3.0 Consensus size: 74
1075 TAGCTAGGCT
**** *
1085 ACCACTTATCACTTTACCACTTGATCAGATAAGTGTAGCTAAGCTACTTATCACTTTTCTTGATC
1 ACCACTTATCACTTTGTTTCTTGATCAGATAA--GTAGCTAAGCCACTTATCACTTTTCTTGATC
1150 AGATAAGTGTA
64 AGATAAGTGTA
*
1161 GCCACTTATCACTTTGTTTCTTGATCAGATAAGT-G-TAA-CCACTTATCACTTGTTTCTTGATC
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTAGCTAAGCCACTTATCAC-T-TTTCTTGATC
1223 AGAT-AGTGTA
64 AGATAAGTGTA
*
1233 ACCACTTATCACTTTGTTTCTTGATCAGATAAGGTAGCTAAAACTACACTTATCACTTTGTCACT
1 ACCACTTATCACTTTGTTTCTTGATCAGATAA-GTAGCT-AAGC--CACTTATCACTTT-T--CT
*
1298 TGATCAGACAAGT
59 TGATCAGATAAGT
1311 ACTCAAATCC
Statistics
Matches: 129, Mismatches: 8, Indels: 21
0.82 0.05 0.13
Matches are distributed among these distances:
71 10 0.08
72 41 0.32
73 17 0.13
74 3 0.02
75 1 0.01
76 29 0.22
77 3 0.02
78 2 0.02
79 10 0.08
80 10 0.08
81 3 0.02
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.37
Consensus pattern (74 bp):
ACCACTTATCACTTTGTTTCTTGATCAGATAAGTAGCTAAGCCACTTATCACTTTTCTTGATCAG
ATAAGTGTA
Found at i:8776 original size:45 final size:44
Alignment explanation
Indices: 8722--8939 Score: 196
Period size: 37 Copynumber: 5.2 Consensus size: 44
8712 ATCACTTGTC
8722 CTTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTACCA
1 CTTGATCAGATAAGTGTAGCTA-GCTACCACTTATCACTTTACCA
*
8767 CTTGATCAGATAAGTGTAGCTAGCTACCACTTATCACTTTATCA
1 CTTGATCAGATAAGTGTAGCTAGCTACCACTTATCACTTTACCA
****
8811 CTTGATCAGAT-A----AG-T-G-TACCACTTATCACTTTGTTT
1 CTTGATCAGATAAGTGTAGCTAGCTACCACTTATCACTTTACCA
****
8847 CTTGATCAGATAA--GT-G-TA---ACCACTTATCACTTTGTTT
1 CTTGATCAGATAAGTGTAGCTAGCTACCACTTATCACTTTACCA
* **
8884 CTTGATCAGATAAGTGTAGCTAAAACTACCACTTATCACTTTGTCA
1 CTTGATCAGATAAGTGTAGCT--AGCTACCACTTATCACTTTACCA
8930 CTTGATCAGA
1 CTTGATCAGA
8940 AGTACTCAAA
Statistics
Matches: 154, Mismatches: 6, Indels: 25
0.83 0.03 0.14
Matches are distributed among these distances:
36 28 0.18
37 34 0.22
38 3 0.02
39 4 0.03
40 1 0.01
41 1 0.01
43 2 0.01
44 32 0.21
45 22 0.14
46 27 0.18
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (44 bp):
CTTGATCAGATAAGTGTAGCTAGCTACCACTTATCACTTTACCA
Found at i:8813 original size:44 final size:44
Alignment explanation
Indices: 8709--8939 Score: 244
Period size: 44 Copynumber: 5.6 Consensus size: 44
8699 CATATGACCT
8709 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCTAGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTA-GCTACCA
**
8752 CTTATCACTTTACCACTTGATCAGATAAGTGTAGCTAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGCTACCA
*
8796 CTTATCACTTTATCACTTGATCAGAT-A----AG-T-G-TACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGCTACCA
**
8832 CTTATCACTTTGTTTCTTGATCAGATAA--GT-G-TA---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGCTACCA
** *
8869 CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGCTAAAACTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT--AGCTACCA
8915 CTTATCACTTTGTCACTTGATCAGA
1 CTTATCACTTTGTCACTTGATCAGA
8940 AGTACTCAAA
Statistics
Matches: 165, Mismatches: 8, Indels: 27
0.82 0.04 0.14
Matches are distributed among these distances:
36 28 0.17
37 34 0.21
38 3 0.02
39 4 0.02
40 1 0.01
41 1 0.01
43 10 0.06
44 35 0.21
45 22 0.13
46 27 0.16
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (44 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGCTACCA
Found at i:10296 original size:30 final size:30
Alignment explanation
Indices: 10262--10319 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
10252 CCTCGACTCT
* *
10262 AACTTTTTCAAAATTGCAATTTTGCCCCTA
1 AACTTTTGCAAAATTACAATTTTGCCCCTA
* *
10292 AACTTTTGCATAATTACATTTTTGCCCC
1 AACTTTTGCAAAATTACAATTTTGCCCC
10320 AAAGCTTGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.28, C:0.24, G:0.07, T:0.41
Consensus pattern (30 bp):
AACTTTTGCAAAATTACAATTTTGCCCCTA
Found at i:12149 original size:37 final size:37
Alignment explanation
Indices: 12088--12233 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
12078 TACGTATGAT
* *
12088 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
12123 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
12160 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
12197 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
12234 TAAAGCTATC
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 92 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:12250 original size:46 final size:46
Alignment explanation
Indices: 12197--12510 Score: 396
Period size: 46 Copynumber: 6.6 Consensus size: 46
12187 TAAGTGTAGC
* * **
12197 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
*
12243 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
* *
12289 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
12341 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
*
12387 CACTTATCACTTTATCACTTGATCA-ATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
* ** *
12432 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
*
12484 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
12511 AGTACTCAAA
Statistics
Matches: 240, Mismatches: 15, Indels: 26
0.85 0.05 0.09
Matches are distributed among these distances:
45 30 0.12
46 125 0.52
47 1 0.00
49 2 0.01
50 1 0.00
51 13 0.05
52 68 0.28
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
Found at i:12316 original size:52 final size:52
Alignment explanation
Indices: 12240--12504 Score: 340
Period size: 52 Copynumber: 5.3 Consensus size: 52
12230 TAGCTAAAGC
* *
12240 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* *
12293 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
12345 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
12391 TATCAC-TTT-A----TCACTTGATCA-ATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
12436 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
12488 TATCACTTTATCACTTG
1 TATCACTTT-TCACTTG
12505 ATCAGAAGTA
Statistics
Matches: 189, Mismatches: 12, Indels: 22
0.85 0.05 0.10
Matches are distributed among these distances:
45 30 0.16
46 56 0.30
47 1 0.01
48 1 0.01
49 1 0.01
51 11 0.06
52 71 0.38
53 18 0.10
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:12362 original size:98 final size:98
Alignment explanation
Indices: 12197--12504 Score: 405
Period size: 98 Copynumber: 3.1 Consensus size: 98
12187 TAAGTGTAGC
* * * *
12197 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACTTTGTCACT
12262 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
12296 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACTTTGTCACTT
12361 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
12394 CAC-TTT-A----TCACTTGATCA-ATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTG
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCAC--T----TTG
* ** *
12452 TCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
60 TCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
12491 CACTTTATCACTTG
1 CACTTT-TCACTTG
12505 ATCAGAAGTA
Statistics
Matches: 186, Mismatches: 10, Indels: 21
0.86 0.05 0.10
Matches are distributed among these distances:
91 28 0.15
92 11 0.06
93 1 0.01
96 1 0.01
97 44 0.24
98 90 0.48
99 10 0.05
100 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:12471 original size:143 final size:144
Alignment explanation
Indices: 12196--12510 Score: 533
Period size: 143 Copynumber: 2.2 Consensus size: 144
12186 ATAAGTGTAG
* * * * *
12196 CCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTC
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCAC
*
12261 TTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTTCACTTGTCACTTGATCAGATAAG
66 TTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAG
*
12326 TGTAGCTGAAGCTA
131 TGTAGCTAAAGCTA
* *
12340 TCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTATCAC
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCAC
12405 TTGATCA-ATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAG
66 TTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAG
12469 TGTAGCTAAAGCTA
131 TGTAGCTAAAGCTA
*
12483 CCACTTATCACTTTATCACTTGATCAGA
1 CCACTTATCACTTTGTCACTTGATCAGA
12511 AGTACTCAAA
Statistics
Matches: 160, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
143 95 0.59
144 65 0.41
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (144 bp):
CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTATCAC
TTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAG
TGTAGCTAAAGCTA
Found at i:17119 original size:12 final size:12
Alignment explanation
Indices: 17104--17134 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
17094 TTCTCTTTTA
17104 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
17116 TTTTTCTTTCGC
1 TTTTTCTTTCCC
17128 TTTTTCT
1 TTTTTCT
17135 CCCCTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.03, T:0.71
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:17745 original size:13 final size:15
Alignment explanation
Indices: 17716--17748 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
17706 GGTTAATAAT
17716 TATAATAATTATATG
1 TATAATAATTATATG
17731 TATAAT-ATT-TATG
1 TATAATAATTATATG
17744 TATAA
1 TATAA
17749 CTTAAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.50
14 3 0.17
15 6 0.33
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48
Consensus pattern (15 bp):
TATAATAATTATATG
Found at i:18346 original size:28 final size:28
Alignment explanation
Indices: 18315--18369 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
18305 CTTAAACTAT
*
18315 TTAATAATTATTAAAAACTCGGAATAAC
1 TTAATAATTATTAAAAACTCAGAATAAC
*
18343 TTAATAATTATTAAAAATTCAGAATAA
1 TTAATAATTATTAAAAACTCAGAATAA
18370 TAAAATAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.53, C:0.07, G:0.05, T:0.35
Consensus pattern (28 bp):
TTAATAATTATTAAAAACTCAGAATAAC
Found at i:18376 original size:28 final size:28
Alignment explanation
Indices: 18317--18378 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
18307 TAAACTATTT
* *
18317 AATAATTATTAAAAACTCGGAATAACTT
1 AATAATTATTAAAAACTCAGAATAACTA
*
18345 AATAATTATTAAAAATTCAGAATAA-TAA
1 AATAATTATTAAAAACTCAGAATAACT-A
18373 AATAAT
1 AATAAT
18379 GAAAGCTGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
27 1 0.03
28 29 0.97
ACGTcount: A:0.56, C:0.06, G:0.05, T:0.32
Consensus pattern (28 bp):
AATAATTATTAAAAACTCAGAATAACTA
Found at i:31095 original size:21 final size:23
Alignment explanation
Indices: 31071--31123 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
31061 TATAACTCTA
31071 AAAATAAAAATA-TATTT-TAAT
1 AAAATAAAAATATTATTTATAAT
*
31092 AAAA-ACAAAATATTTTTTATAAT
1 AAAATA-AAAATATTATTTATAAT
31115 AAAATAAAA
1 AAAATAAAA
31124 TCTATTTAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 1 0.04
21 10 0.37
22 4 0.15
23 11 0.41
24 1 0.04
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (23 bp):
AAAATAAAAATATTATTTATAAT
Done.