Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2373
Parameters: 2 7 7 80 10 50 1000
Length:  110604

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4717--4834
55
2.1
55
84
6
159
25
22
13
38
1.90
5460--5514
20
2.8
20
88
0
83
29
16
29
25
1.97
6841--6868
14
2.0
14
100
0
56
35
0
42
21
1.53
8565--8661
30
3.2
30
77
2
115
28
26
15
28
1.96
11426--11477
23
2.3
22
75
21
54
9
23
1
65
1.32
11435--11490
12
4.7
12
74
14
53
12
23
0
64
1.27
14040--14078
12
3.3
12
89
3
53
79
0
0
20
0.73
15263--15347
10
8.5
10
70
10
66
23
22
16
37
1.93
15300--15356
30
1.9
30
88
0
87
19
19
19
42
1.90
15263--15347
20
4.2
20
86
0
107
23
22
16
37
1.93
15263--15336
20
3.7
20
90
0
112
24
21
17
36
1.95
19744--19786
22
1.9
23
90
4
70
34
34
4
25
1.77
20094--20122
12
2.4
12
100
0
58
79
0
6
13
0.93
20092--20153
22
2.9
21
79
15
72
74
0
8
17
1.06
22356--22400
19
2.3
20
84
7
65
77
2
13
6
1.05
28885--28925
17
2.4
18
80
8
50
14
24
4
56
1.58
36788--36830
22
1.9
23
90
4
70
37
32
4
25
1.77
42306--42402
30
3.2
30
72
8
99
28
16
26
27
1.97
44581--44611
12
2.6
12
100
0
62
25
16
12
45
1.83
44672--44721
6
8.2
6
81
16
50
2
20
2
76
0.99
44661--44731
37
1.9
37
86
11
101
2
18
2
76
1.04
44657--44717
16
3.8
16
77
14
63
3
19
1
75
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45612--45656
12
3.8
12
82
8
56
15
8
2
73
1.18
45612--45677
9
6.2
11
72
22
52
15
7
3
74
1.17
47339--47435
30
3.2
30
75
2
106
28
15
26
28
1.96
48509--48561
23
2.4
22
76
20
56
9
18
1
69
1.25
50429--50472
22
2.0
22
95
0
79
25
36
4
34
1.76
50792--50832
15
2.6
16
85
14
59
75
0
9
14
1.04
53981--54032
12
4.3
12
85
4
70
17
5
3
73
1.19
53981--54025
11
3.8
12
85
5
56
15
4
2
77
1.02
53977--54028
23
2.2
24
93
3
88
15
7
5
71
1.29
53977--54063
24
3.7
23
73
11
77
13
11
4
70
1.32
64783--64879
30
3.2
30
77
2
115
27
25
16
29
1.97
70711--70757
23
2.1
23
84
7
62
51
12
4
31
1.59
75537--75601
20
3.3
19
73
16
51
38
16
21
23
1.93
77610--77660
14
3.6
14
86
10
68
23
13
5
56
1.59
77610--77657
13
3.5
13
91
8
69
22
12
6
58
1.57
77701--77740
11
3.6
11
100
0
80
15
0
7
77
0.98
79677--79737
10
6.1
10
74
12
54
32
13
24
29
1.93
79678--79738
20
3.0
20
83
9
79
32
13
26
27
1.93
81804--81838
18
1.9
18
88
11
54
22
20
0
57
1.41
81826--81930
6
17.2
6
66
9
52
7
17
3
71
1.25
81877--81930
6
9.2
6
75
4
56
3
14
5
75
1.12
84385--84445
10
6.1
10
74
12
54
32
13
24
29
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84386--84446
20
3.0
20
83
9
79
32
13
26
27
1.93
84958--85004
23
2.1
23
84
7
62
51
12
4
31
1.59
92524--92578
15
3.8
15
85
2
69
1
21
1
74
1.01
94756--94815
12
4.5
13
76
17
61
71
3
8
16
1.24
94818--94860
16
2.7
16
77
0
50
74
4
18
2
1.10
95880--95997
12
9.8
12
68
18
50
70
3
18
7
1.26
95897--96000
18
5.6
18
75
5
82
71
3
18
6
1.24
95893--96000
6
17.7
6
70
6
74
71
3
18
6
1.23
95961--95998
13
2.8
13
82
17
51
73
0
18
7
1.06
95962--96012
21
2.4
21
74
6
50
74
1
17
5
1.11
96015--96077
33
1.9
33
84
12
85
53
6
26
12
1.62
97853--97906
20
2.7
20
82
0
63
24
20
18
37
1.94
97853--97926
30
2.5
30
86
8
98
21
20
18
39
1.93
97853--97917
20
3.2
20
71
16
53
23
21
16
38
1.93
101437--101480
22
2.0
22
95
0
79
25
36
4
34
1.76
104006--104047
18
2.3
18
87
0
57
80
2
9
7
0.97
109806--109849
22
2.0
22
95
0
79
34
4
36
25
1.76

Tables:   1

The End!