Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1681
Parameters: 2 7 7 80 10 50 1000
Length:  62074

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5756--5790
18
1.9
18
94
0
61
25
37
22
14
1.92
9954--10033
37
2.2
37
97
0
151
20
18
20
41
1.91
14355--14400
23
2.0
23
83
8
58
50
0
2
47
1.13
17569--17607
20
1.9
21
94
5
71
23
25
30
20
1.98
18668--18717
26
1.9
26
95
0
91
40
0
10
50
1.36
19538--19569
16
2.1
15
94
5
55
84
0
15
0
0.63
19743--20128
116
3.4
117
88
4
545
37
12
13
36
1.84
20516--20540
13
1.9
13
100
0
50
60
0
0
40
0.97
20132--20713
115
5.1
116
87
5
792
34
15
13
36
1.87
20696--20729
17
2.1
16
94
5
59
0
14
0
85
0.60
23245--23303
30
2.0
28
87
6
82
33
22
10
33
1.87
27391--27433
5
8.8
5
82
5
52
74
0
6
18
1.04
27391--27433
14
2.9
15
82
6
52
74
0
6
18
1.04
28594--28628
18
2.0
17
88
5
52
54
0
0
45
0.99
28481--28797
157
2.0
157
95
0
562
44
3
5
47
1.42
28766--28953
61
3.1
60
67
14
179
47
6
2
43
1.42
28729--29026
120
2.5
121
90
5
453
49
5
2
42
1.40
28850--28901
15
3.6
15
80
12
56
53
1
0
44
1.11
29067--29114
26
1.9
25
84
16
64
52
2
0
45
1.12
29022--29250
92
2.5
92
83
8
236
47
3
3
44
1.38
32537--32563
12
2.2
12
100
0
54
33
7
0
59
1.25
35890--35942
21
2.4
22
78
15
56
67
0
7
24
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37222--37258
17
2.1
19
90
10
60
64
2
0
32
1.07
38167--38259
31
3.1
30
80
12
84
34
7
8
49
1.62
38789--38835
23
2.1
21
84
7
58
78
2
2
17
0.94
38874--38923
26
1.9
26
84
8
66
68
0
4
28
1.08
43048--43082
18
2.0
18
88
5
54
54
5
8
31
1.54
45765--45813
13
3.9
13
75
20
50
59
0
0
40
0.98

Tables:   1

The End!